Citrus Sinensis ID: 007711

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590--
Protein Sequence
MCVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI
Secondary Structure (PSIPRED)
cEEEEEEcccccEEEEccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEccccEEEEEccHHHHccccccEEEcccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEcccccccHHHHHHHHcccccEEccccccEEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEccccccEEEEEcccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccHHHccccccccHHHcccccHHHHHcccccccccHHHHccccccccccccccHcccccccEEEEcccccccccccHHHcccccccEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcHHcccccccccccccccccccHHHHHHHHHccccEEccccccEEEEEEcccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEcccccccEEEEEEccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEccccccEEcccccccEHHHHHHHHHHHHcccccccHHHHEEcEccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccHHHcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccHHHHEEEEccccc
Coil and Loop (DISEMBL)
mcvmcrnlkdlclegtlapeiqslTHIKSIIlrnnsfsgiipegfgeleelevldfghnnfsgplpndlginhSLTIllldnndfvgslspEIYKLQvlsesqvdegqlssaAKKEQSCYERsikwngvldedTVQRRLLqinpfrnlkgrilgiaptsspppssdaippasvgssddtkanetssdrndsvsppklsnpapapapnqtptptpsipiprpsssqshqksggssskHIAILGGVIGGAILLVATVGIYLCRcnkvstvkpwatglsgQLQKAFVTGVPKLKRSELEAACEDFsnvigsspigtvykgtlsNGVEIAVASVSVAsakdwpknLEVQFRKKIDTLSKVNHKNFVNLigfceeeepftrmmvfeyapngtlfehihikesehldWGMRLRIAMGMAYCLEHmhqlnppiahnylnssaVHLTEDYAAKLSDLSFWNEIAMAEMAATSkklssapsaslesnvYNFGVLLFEMVTgrlpylvdngsleDWAADYlsgvqplqqfvdptlssfdEEQLETLGELIKSCvradpekrptMRDIAAILREItgitpdgaipklsplWWAEIEILSTEAI
Flexible Loop (DISEMBL)
MCVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQlssaakkeqscyersikwngvldedtvQRRLLQINPFRNLKGRILGIAptsspppssdAIPPASVGSSDDTKANetssdrndsvsppkLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKpwatglsgqlQKAFVTGVPKLKRSELEAACEDFsnvigsspiGTVYKGTLSNGVEIAVASVSvasakdwpknLEVQFRKKidtlskvnhkNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKscvradpekrptMRDIAAILReitgitpdgaipklsplWWAEIEILSTEAI
Low Complexity Region (SEG)
MCVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPegfgeleelevldfgHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIaptsspppssdaippasVGSSDDTKANETSSDRNDSVsppklsnpapapapnqtptptpsipiprpsssqshqksggssskhiailggviggaillvaTVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIavasvsvasaKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMaatskklssapsaslesNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI
Disordered region (IsUnstruct)
*CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL*******************CYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGI*********************************************************************************HIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE*****************SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRA******TMRDIAAILREITGITPDGAIPKLSPLWWAEIEIL*****
Disordered Region (DISOPRED)
MCVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYE**************************************************************************KLSNPAPAPAPNQTPTP**************************AILGGVIGGAILLVATVGIYLCRCN********************VTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSV************QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR****************LWWAEIEILST***
Disordered Region (DISEMBL)
MCVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS*******************YERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAP*******************************************************TPSI*******************KHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM*************SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI
Disordered Region (DISPRO)
MCVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSS*******GSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVST**P******GQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA*********EVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI*******KLSPLWWAEIEILS****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	592	2.2.26 [Sep-21-2011]
C0LGQ4	678	Probable LRR receptor-lik	yes	no	0.947	0.827	0.413	1e-131
Q9SIZ4	489	Inactive receptor-like se	no	no	0.736	0.891	0.501	1e-127
C0LGU7	695	Probable LRR receptor-lik	no	no	0.966	0.823	0.411	1e-127
Q9LYN6	499	Probable inactive recepto	no	no	0.687	0.815	0.552	1e-121
C0LGH8	664	Probable LRR receptor-lik	no	no	0.920	0.820	0.307	1e-78
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.913	0.490	0.280	2e-40
O49545	1003	Leucine-rich repeat recep	no	no	0.864	0.510	0.264	3e-39
Q1PEM5	513	Proline-rich receptor-lik	no	no	0.567	0.654	0.314	9e-38
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.890	0.478	0.259	3e-36
C0LGD7	953	Probable LRR receptor-lik	no	no	0.574	0.356	0.300	4e-36

>sp|C0LGQ4|MRH1_ARATH Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1

 Score =  470 bits (1209), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/634 (41%), Positives = 370/634 (58%), Gaps = 73/634 (11%)

Query: 3   VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           V   +L    LEGTLAPE+  L+ ++S+IL  N FSG IP+ +G  E LEVLD   N+ S
Sbjct: 72  VQILDLSGYSLEGTLAPELSQLSDLRSLILSRNHFSGGIPKEYGSFENLEVLDLRENDLS 131

Query: 63  GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG-QLSSAA------KK 115
           G +P +L    SL  LLL  N F   +  +I +LQ   E ++ +  +LS  A      +K
Sbjct: 132 GQIPPELSNGLSLKHLLLSGNKFSDDMRIKIVRLQSSYEVRLKKSPKLSPLAVLGCINRK 191

Query: 116 EQSCYERS--------------IK---------WNGVLDEDTVQRRLLQINPFRNLKGRI 152
              C  R+              IK         +   L+E  + +R   +    NL    
Sbjct: 192 LGHCVSRNRIIQVKKVEAIVFRIKATSRRFLKAFPSFLEETDIYKRRELLEETSNLAAEP 251

Query: 153 L--------GIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAP 204
                    GI  T + P SS + P  +                +   + P +S   P  
Sbjct: 252 APSAPSPSPGII-TEASPRSSGSFPAVTNAKKRRPPLVPPVPSPDKGSTSPDISKNQP-- 308

Query: 205 APNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNK 264
                               Q +++S GS    + ++  V     LL+    I+ CR   
Sbjct: 309 --------------------QDNKQSKGSKHVWLYVVIAVASFVGLLIIVAVIFFCRKRA 348

Query: 265 VSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVE 324
           V ++ PW TGLSGQLQKAFVTGVPKL RSELE ACEDFSN+I +    TVYKGTLS+GVE
Sbjct: 349 VKSIGPWKTGLSGQLQKAFVTGVPKLNRSELETACEDFSNIIETFDGYTVYKGTLSSGVE 408

Query: 325 IAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP 384
           IAVAS ++A +K+W + +E+ +R+KIDTLS++NHKNFVNLIG+CEE++PF RMMVFEYAP
Sbjct: 409 IAVASTAIAESKEWTRAMEMAYRRKIDTLSRINHKNFVNLIGYCEEDDPFNRMMVFEYAP 468

Query: 385 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAA 444
           NGTLFEH+H KE+EHLDW  R+RI MG AYCL+HMH +NPP+AH   NSS ++LT+DYAA
Sbjct: 469 NGTLFEHLHDKETEHLDWSARMRIIMGTAYCLQHMHGMNPPMAHTDFNSSEIYLTDDYAA 528

Query: 445 KLSDLSFWNEIAM-------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYL 497
           K+S++ F  E  +        ++  TS  L   P    E+NV++FGVL+ E+++G+L + 
Sbjct: 529 KVSEIPFNLEARLNPKKHVSGDLEQTSLLLPPEP----EANVHSFGVLMLEIISGKLSFS 584

Query: 498 VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
            + GS+E WA+ YL     L + +DP+L +F EE+LE + ++I+ C++ +  +RP+M+D+
Sbjct: 585 DEYGSIEQWASKYLEK-DDLGEMIDPSLKTFKEEELEVICDVIRECLKTEQRQRPSMKDV 643

Query: 558 AAILREITGITPDGAIPKLSPLWWAEIEILSTEA 591
           A  L+++  ITP+ A P+ SPLWWAE+EILS+EA
Sbjct: 644 AEQLKQVINITPEKATPRSSPLWWAELEILSSEA 677

May be involved in the regulation of root hairs development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SIZ4|Y2027_ARATH Inactive receptor-like serine/threonine-protein kinase At2g40270 OS=Arabidopsis thaliana GN=At2g40270 PE=1 SV=2

 Score =  457 bits (1175), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/487 (50%), Positives = 327/487 (67%), Gaps = 51/487 (10%)

Query: 121 ERSIKWNGVLDEDTV-------QRRLLQINPFRNL------KGRILG--IAPTSSPPPSS 165
           E S+K +   DED+         R+ L  NP+++L      K R++     P+SSP P+ 
Sbjct: 35  EDSLKKDLSSDEDSTYLKAFGFHRKTLVRNPYKDLPSRKDRKNRVVAATTTPSSSPEPAP 94

Query: 166 DAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQ 225
             +          TKA+  S  +  S +     + +P+P+      P  + PIPR S S 
Sbjct: 95  KHV---------STKASTVSEPQKRSST----QDVSPSPS-----APLANSPIPRNSHSS 136

Query: 226 SHQKSGGSSSKHIAILGGVIGGA--ILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAF 283
                       + ++ G +GGA  +LLVAT G+Y        TV PW TGLSGQLQK F
Sbjct: 137 ------------VPLVVGCVGGAFFLLLVAT-GLYFFTSKAGKTVNPWRTGLSGQLQKVF 183

Query: 284 VTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLE 343
           VTG+P LKRSE+EAACEDFSNVIGS PIG ++KGTLS+GVEIAVAS +  +AKDW  + E
Sbjct: 184 VTGIPVLKRSEIEAACEDFSNVIGSCPIGKLFKGTLSSGVEIAVASFATTTAKDWKDSTE 243

Query: 344 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG 403
           + FRKKI+ LSK+NHKNF NL+G+CEE+EPFTR+++FEYAPNG+LFEH+H KESEHLDWG
Sbjct: 244 IHFRKKIEMLSKINHKNFANLLGYCEEKEPFTRILIFEYAPNGSLFEHLHYKESEHLDWG 303

Query: 404 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT 463
           MRLRIAMG+AYCL+HMHQLNPPIAH  L SS++ LTEDYA K+SD SF +      +   
Sbjct: 304 MRLRIAMGLAYCLDHMHQLNPPIAHTNLVSSSLQLTEDYAVKVSDFSFGSSETETNINNN 363

Query: 464 SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPLQQFVD 522
           +   +   + + E N+Y+FG+LLFEM+TG+L   V+   S++    D+L G + L + VD
Sbjct: 364 TVIDTHISALNPEDNIYSFGLLLFEMITGKLIESVNKPDSVDSSLVDFLRG-ETLAKMVD 422

Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWA 582
           PTL S+D  ++E +GE+IKSC+R DP++RPTM+++   LREITG++P+ A PKLSPLWWA
Sbjct: 423 PTLESYD-AKIENIGEVIKSCLRTDPKERPTMQEVTGWLREITGLSPNDATPKLSPLWWA 481

Query: 583 EIEILST 589
           E+E+LST
Sbjct: 482 ELEVLST 488

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGU7|Y5458_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g45840 OS=Arabidopsis thaliana GN=At5g45840 PE=2 SV=1

 Score =  456 bits (1173), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 262/636 (41%), Positives = 368/636 (57%), Gaps = 64/636 (10%)

Query: 3   VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           V   NL    L GTLAPE+  L+ ++S+IL  N  SG IP  F    +LE LD   NN +
Sbjct: 76  VQMLNLSGCSLGGTLAPELSQLSELRSLILSKNKLSGDIPNEFASFAKLEFLDLRDNNLN 135

Query: 63  GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG-QLSSAAKKEQSCYE 121
           G +P +L    +   LLL  N F G ++ +  +LQ L + Q+++  +LSS +     C  
Sbjct: 136 GVVPPELNKVLTPENLLLSGNKFAGFMTVKFLRLQSLYKVQMNKNRELSSVSADVLDCVN 195

Query: 122 RSIKWNGVLDEDTVQRRLLQINPFRN-LKGRILGIAPTSSPPPSSDAIPPASVGSSDDTK 180
           R + +        V RR L     RN  K  +L I  TS            +   +    
Sbjct: 196 RKLGY-------CVSRRSLIT---RNKAKAFVLRIRATSRHYMVRRESHGKNYVVNYHPS 245

Query: 181 ANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTP---SIPIPRPSSS------------- 224
            NETS  +   +   + SN A  PAP+ TP+P+P   +I  PR S S             
Sbjct: 246 ENETSIFKRRELLE-ETSNLAAMPAPD-TPSPSPEIITIVFPRSSGSFPALTNAKKRIPP 303

Query: 225 ----------------------QSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRC 262
                                 +  +KS G     + ++ GV     +L+    I+  R 
Sbjct: 304 LIPPSSPPPLPTNNTIASDPPRKFEEKSKGFKDVWLYVVIGVAAFVAMLIIVAVIFFFRK 363

Query: 263 NKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNG 322
             V ++ PW TGLSGQLQKAFVTGVPKL RSELE ACEDFSN+I +    TVYKGTLS+G
Sbjct: 364 RAVKSIGPWKTGLSGQLQKAFVTGVPKLNRSELETACEDFSNIIEAFDGYTVYKGTLSSG 423

Query: 323 VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY 382
           VEIAVAS ++   ++W + +E+ +R++IDT+S+VNHKNF+NLIG+CEE+EPF RMMVFEY
Sbjct: 424 VEIAVASTAILETREWTRAMEMTYRRRIDTMSRVNHKNFINLIGYCEEDEPFNRMMVFEY 483

Query: 383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY 442
           APNGTLFEH+H KE EHLDW  R RI MG AYCL++MH+LNPPI+H  L SSA++LT+DY
Sbjct: 484 APNGTLFEHLHDKEMEHLDWNARTRIIMGTAYCLQYMHELNPPISHTKLVSSAIYLTDDY 543

Query: 443 AAKLSDLSFWNEIAMAEMAATSKKLSSAPSASL-------ESNVYNFGVLLFEMVTGRLP 495
           AAK+ ++ F  +      +   K +S     SL       E+NVY+FGVL+ E+++G+L 
Sbjct: 544 AAKVGEVPFSGQTG----SKPRKPMSGDLDQSLLPLPPEPETNVYSFGVLMLEIISGKLS 599

Query: 496 YLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMR 555
              + GS+  WA+ YL     L+  +DPTL+++ EE+LE + ++ + C++ D  +RP M+
Sbjct: 600 DSEEEGSILKWASKYLEN-DNLRDMIDPTLTTYKEEELEAICDVARHCLKLDESQRPKMK 658

Query: 556 DIAAILREITGITPDGAIPKLSPLWWAEIEILSTEA 591
            +   L+E+  I+ + A P+LSPLWWAE+EILS+EA
Sbjct: 659 YVVQQLKEVINISQEQATPRLSPLWWAELEILSSEA 694

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN6|Y3565_ARATH Probable inactive receptor-like protein kinase At3g56050 OS=Arabidopsis thaliana GN=At3g56050 PE=2 SV=1

 Score =  437 bits (1124), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/436 (55%), Positives = 313/436 (71%), Gaps = 29/436 (6%)

Query: 163 PSSDAIPPAS-VGSSDDTKANETSSDRNDSVSPPKLSNPA---PAPAPNQTPTPTPSIPI 218
           P + A PP+S V +  D K       R+ ++ PP+ S PA    AP P       PS   
Sbjct: 83  PVARATPPSSSVSTRPDAK-------RSSTLPPPQKSPPAQHVSAPPPFVHHVTLPS--- 132

Query: 219 PRPSSSQSHQKSGGSSSKHIAILGGVIGGA--ILLVATVGIYLCRCNKVSTVKPWATGLS 276
                      S  SS+  I I+ G I GA  ILL+AT G++  +     +V PW TGLS
Sbjct: 133 -------LTSSSKTSSNSTIPIVAGCIAGAVFILLLAT-GVFFFKSKAGKSVNPWRTGLS 184

Query: 277 GQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK 336
           GQLQK F+TGVPKLKRSE+EAACEDFSNVIGS PIGT++KGTLS+GVEIAVASV+ ASAK
Sbjct: 185 GQLQKVFITGVPKLKRSEIEAACEDFSNVIGSCPIGTLFKGTLSSGVEIAVASVATASAK 244

Query: 337 DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE 396
           +W  N+E+QFRKKI+ LSK+NHKNFVNL+G+CEEEEPFTR++VFEYA NGT+FEH+H KE
Sbjct: 245 EWTNNIEMQFRKKIEMLSKINHKNFVNLLGYCEEEEPFTRILVFEYASNGTVFEHLHYKE 304

Query: 397 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 456
           SEHLDW MRLRIAMG+AYCL+HMH L PPI H+ L SS+V LTEDYA K++D +F     
Sbjct: 305 SEHLDWVMRLRIAMGIAYCLDHMHGLKPPIVHSNLLSSSVQLTEDYAVKIADFNFGYLKG 364

Query: 457 MAEMAATSKKL--SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSG 513
            +E  +++  L  ++    + E NV++FG+LLFE++TG+LP  V  G S++   A +L G
Sbjct: 365 PSETESSTNALIDTNISETTQEDNVHSFGLLLFELMTGKLPESVQKGDSIDTGLAVFLRG 424

Query: 514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAI 573
            + L++ VDPT+ SFD E++E +GE+IKSC+RAD ++RP M+++   LREITG++PD  I
Sbjct: 425 -KTLREMVDPTIESFD-EKIENIGEVIKSCIRADAKQRPIMKEVTGRLREITGLSPDDTI 482

Query: 574 PKLSPLWWAEIEILST 589
           PKLSPLWWAE+E+LST
Sbjct: 483 PKLSPLWWAELEVLST 498

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGH8|Y1634_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1

 Score =  294 bits (752), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 188/611 (30%), Positives = 308/611 (50%), Gaps = 66/611 (10%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
           ++G LAPE+  +T+++ +IL  N   G IP+  G L+ L++LD G+N+  GP+P ++G  
Sbjct: 81  IKGFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSL 140

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDE 132
             + I+ L +N   G L  E+  L+ L E  +D  +L  +                V   
Sbjct: 141 SGIMIINLQSNGLTGKLPAELGNLKYLRELHIDRNRLQGSLL--------------VAGA 186

Query: 133 DTVQRRLLQINPFRNLKG--RILGIAPTS------SPPPSSDAIPPASVG----SSDDTK 180
              Q ++   N   N+ G  + L +A  S      + P   + +P  S       + D K
Sbjct: 187 SGYQSKVYSSNSSANIAGLCKSLKVADFSYNFFVGNIPKCLENLPRTSFQGNCMQNKDLK 246

Query: 181 ANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAI 240
              +S   N  +     ++ +P+ AP        +         + H+ S       + I
Sbjct: 247 HRSSSQCANAQLVK---THGSPSAAPKHQSAQMVA---------KHHRASKPKWLLALEI 294

Query: 241 LGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQ------LQKAFVTGVPKLKRSE 294
           + G + G +LLVA         N+ + + PW    S +      +    +  V +L R E
Sbjct: 295 VTGSMVGLLLLVALFSAVHRWNNRSTLIIPWKKSSSEKEKFTVYVDSEMLKDVSRLTRQE 354

Query: 295 LEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLS 354
           LE ACEDFSN+IG S    +YKGTL  G EIAV S+ V   +DW   LE+ F++++  L+
Sbjct: 355 LEVACEDFSNIIGLSADSQIYKGTLKGGSEIAVISLCVKE-EDWTGYLELYFQREVADLA 413

Query: 355 KVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAY 414
           ++NH+N   L+G+C+E  PFTRM+VFEYA NGTL+EH+H  E+  + W  R++I +G+A 
Sbjct: 414 RLNHENTAKLLGYCKEISPFTRMLVFEYASNGTLYEHLHYGEAALVSWARRMKIVIGIAR 473

Query: 415 CLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSA 473
            L+++H +L+PP   + L+S+A++LTED+  KL D   W  I +A      + +SS  S 
Sbjct: 474 GLKYLHMELDPPFTISELSSNAIYLTEDFTPKLVDFECWKTI-LARSEKNLRNISSQGSI 532

Query: 474 S------------LESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV 521
                        +  N+Y FG+LL E+V+GR PY  D G L +WA ++L   + +   V
Sbjct: 533 CVLPNGMESRYLDVSGNIYAFGILLLEIVSGRPPYCKDKGFLIEWAKEFLEAPEAMSGLV 592

Query: 522 DPTLSSFDEEQLETLGELIKSCVRADP------EKRPTMRDIAAILREITGITPDGAIPK 575
           DP L  F++E LET+ E+   C+  DP        +P+++++   L     ++    + +
Sbjct: 593 DPELKHFNQEDLETVCEVASQCLNRDPTNNNNNHNKPSVQELCETLESRISLSISAEL-R 651

Query: 576 LSPLWWAEIEI 586
            S L WAE+ +
Sbjct: 652 SSSLAWAELAL 662

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  167 bits (423), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 164/584 (28%), Positives = 260/584 (44%), Gaps = 43/584 (7%)

Query: 8    LKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN 67
            L D    G L  EI  L+ + ++ + +N  +G +P      + L+ LD   NNFSG LP+
Sbjct: 512  LADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPS 571

Query: 68   DLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYE-----R 122
            ++G  + L +L L NN+  G++   +  L  L+E Q+     + +  +E           
Sbjct: 572  EVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIAL 631

Query: 123  SIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGS--SDDTK 180
            ++ +N +  E   +   L +  F  L          S   PSS A   + +G   S ++ 
Sbjct: 632  NLSYNKLTGEIPPELSNLVMLEFLLLN-----NNNLSGEIPSSFANLSSLLGYNFSYNSL 686

Query: 181  ANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGG-SSSKHIA 239
                   RN S+S    +     P  NQ     P  P      SQS  K GG  SSK IA
Sbjct: 687  TGPIPLLRNISMSSFIGNEGLCGPPLNQCIQTQPFAP------SQSTGKPGGMRSSKIIA 740

Query: 240  ILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPK--LKRSELEA 297
            I   VIGG  L++  + +YL R   V TV   A           +   PK      +L A
Sbjct: 741  ITAAVIGGVSLMLIALIVYLMR-RPVRTVASSAQDGQPSEMSLDIYFPPKEGFTFQDLVA 799

Query: 298  ACEDF--SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK 355
            A ++F  S V+G    GTVYK  L  G  +AV  ++         N++  FR +I TL  
Sbjct: 800  ATDNFDESFVVGRGACGTVYKAVLPAGYTLAVKKLASNHEGGNNNNVDNSFRAEILTLGN 859

Query: 356  VNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYC 415
            + H+N V L GFC  +   + ++++EY P G+L E +H   S +LDW  R +IA+G A  
Sbjct: 860  IRHRNIVKLHGFCNHQG--SNLLLYEYMPKGSLGEILH-DPSCNLDWSKRFKIALGAAQG 916

Query: 416  LEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS----A 470
            L ++H    P I H  + S+ + L + + A + D      I M    + S    S    A
Sbjct: 917  LAYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPHSKSMSAIAGSYGYIA 976

Query: 471  PSASL------ESNVYNFGVLLFEMVTGRLPY--LVDNGSLEDWAADYLSGVQPLQQFVD 522
            P  +       +S++Y++GV+L E++TG+ P   +   G + +W   Y+         +D
Sbjct: 977  PEYAYTMKVTEKSDIYSYGVVLLELLTGKAPVQPIDQGGDVVNWVRSYIRRDALSSGVLD 1036

Query: 523  PTLSSFDEEQLETLGELIKS---CVRADPEKRPTMRDIAAILRE 563
              L+  DE  +  +  ++K    C    P  RP+MR +  +L E
Sbjct: 1037 ARLTLEDERIVSHMLTVLKIALLCTSVSPVARPSMRQVVLMLIE 1080

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  163 bits (413), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 155/586 (26%), Positives = 255/586 (43%), Gaps = 74/586 (12%)

Query: 8   LKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN 67
           L+D  L G L        ++  I L NN  SG +P   G    ++ L    N F GP+P+
Sbjct: 438 LQDNYLSGELPVAGGVSVNLGQISLSNNQLSGPLPPAIGNFTGVQKLLLDGNKFQGPIPS 497

Query: 68  DLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWN 127
           ++G    L+ +   +N F G ++PEI + ++L+   +   +LS     E +  +      
Sbjct: 498 EVGKLQQLSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMK------ 551

Query: 128 GVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSSD 187
            +L+   + R  L      ++ G I  +   +S   S + +     G+   +  N TS  
Sbjct: 552 -ILNYLNLSRNHL----VGSIPGSISSMQSLTSLDFSYNNLSGLVPGTGQFSYFNYTSFL 606

Query: 188 RNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGG 247
            N     P L  P   P  +                 QSH K   S+S  + ++ G++  
Sbjct: 607 GN-----PDLCGPYLGPCKDGVAK----------GGHQSHSKGPLSASMKLLLVLGLLVC 651

Query: 248 AILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDF----- 302
           +I       I      K S  + W          AF           L+  C+D      
Sbjct: 652 SIAFAVVAIIKARSLKKASESRAWRL-------TAF---------QRLDFTCDDVLDSLK 695

Query: 303 -SNVIGSSPIGTVYKGTLSNGVEIAV---ASVSVASAKDWPKNLEVQFRKKIDTLSKVNH 358
             N+IG    G VYKG + NG  +AV   A++S  S+ D   N E+Q      TL ++ H
Sbjct: 696 EDNIIGKGGAGIVYKGVMPNGDLVAVKRLAAMSRGSSHDHGFNAEIQ------TLGRIRH 749

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH 418
           ++ V L+GFC   E  T ++V+EY PNG+L E +H K+  HL W  R +IA+  A  L +
Sbjct: 750 RHIVRLLGFCSNHE--TNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIALEAAKGLCY 807

Query: 419 MHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------AMAEMAATSKKLSSA 470
           +H   +P I H  + S+ + L  ++ A ++D      +        M+ +A +   ++  
Sbjct: 808 LHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPE 867

Query: 471 PSASL----ESNVYNFGVLLFEMVTGRLPY--LVDNGSLEDWAADYL-SGVQPLQQFVDP 523
            + +L    +S+VY+FGV+L E+VTGR P     D   +  W      S    + + +DP
Sbjct: 868 YAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKDSVLKVLDP 927

Query: 524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP 569
            LSS    ++  +  +   CV     +RPTMR++  IL EI  + P
Sbjct: 928 RLSSIPIHEVTHVFYVAMLCVEEQAVERPTMREVVQILTEIPKLPP 973

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q1PEM5|PERK3_ARATH Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2

 Score =  158 bits (400), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 124/394 (31%), Positives = 199/394 (50%), Gaps = 58/394 (14%)

Query: 199 NPAPAPAPN----QTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVAT 254
           NP P  +P+     TPT TP   +  PS S+    S G      A++G  IGG +  V T
Sbjct: 90  NPPPPASPSGQEPTTPTMTPGFSLSPPSPSRL---STG------AVVGISIGGGVF-VLT 139

Query: 255 VGIYLCRCNKVSTVK--PWATGLS-GQLQKAFVTGVPKLKRSELEAACEDFS--NVIGSS 309
           +  +LC+  +    K  P   GL  G  Q  F  G       EL  A   FS  N++G  
Sbjct: 140 LIFFLCKKKRPRDDKALPAPIGLVLGIHQSTFTYG-------ELARATNKFSEANLLGEG 192

Query: 310 PIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCE 369
             G VYKG L+NG E+AV  + V SA+      E +F+ +++ +S+++H+N V+L+G+C 
Sbjct: 193 GFGFVYKGILNNGNEVAVKQLKVGSAQG-----EKEFQAEVNIISQIHHRNLVSLVGYCI 247

Query: 370 EEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAH 428
                 R++V+E+ PN TL  H+H K    ++W +RL+IA+  +  L ++H+  NP I H
Sbjct: 248 AGA--QRLLVYEFVPNNTLEFHLHGKGRPTMEWSLRLKIAVSSSKGLSYLHENCNPKIIH 305

Query: 429 NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS---------APSASL--ES 477
             + ++ + +   + AK++D     +IA+      S ++           A S  L  +S
Sbjct: 306 RDIKAANILIDFKFEAKVADFGL-AKIALDTNTHVSTRVMGTFGYLAPEYAASGKLTEKS 364

Query: 478 NVYNFGVLLFEMVTGRLPYLVDN----GSLEDWAADYLSGVQPLQQ-----FVDPTLSS- 527
           +VY+FGV+L E++TGR P   +N     SL DWA   L  VQ L++       D  L++ 
Sbjct: 365 DVYSFGVVLLELITGRRPVDANNVYADDSLVDWARPLL--VQALEESNFEGLADIKLNNE 422

Query: 528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
           +D E++  +     +CVR    +RP M  +  +L
Sbjct: 423 YDREEMARMVACAAACVRYTARRRPRMDQVVRVL 456

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  153 bits (387), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 153/590 (25%), Positives = 254/590 (43%), Gaps = 63/590 (10%)

Query: 15   GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHS 74
            G + PEI +LT I    + +N  +G IP+  G    ++ LD   N FSG +  +LG    
Sbjct: 513  GEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVY 572

Query: 75   LTILLLDNNDFVGSLSPEIYKLQVLSESQ-----------VDEGQLSSAAKKEQSCYERS 123
            L IL L +N   G +      L  L E Q           V+ G+L+S        +   
Sbjct: 573  LEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHN-- 630

Query: 124  IKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPAS----VGSSDDT 179
               +G + +     ++L+I    +   ++ G  P S     S  I   S    VG+  DT
Sbjct: 631  -NLSGTIPDSLGNLQMLEILYLND--NKLSGEIPASIGNLMSLLICNISNNNLVGTVPDT 687

Query: 180  KANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIA 239
               +   D ++      L N       +Q     P +P    S S+ +    GS  + I 
Sbjct: 688  AVFQ-RMDSSNFAGNHGLCN-------SQRSHCQPLVP---HSDSKLNWLINGSQRQKIL 736

Query: 240  ILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTG--VPK--LKRSEL 295
             +  ++ G++ L+  +G+    C  +   +P    L  Q +   +     PK       L
Sbjct: 737  TITCIVIGSVFLITFLGL----CWTIKRREPAFVALEDQTKPDVMDSYYFPKKGFTYQGL 792

Query: 296  EAACEDFSN--VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTL 353
              A  +FS   V+G    GTVYK  +S G  IAV  ++         N    FR +I TL
Sbjct: 793  VDATRNFSEDVVLGRGACGTVYKAEMSGGEVIAVKKLNSRGEGASSDN---SFRAEISTL 849

Query: 354  SKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE-HLDWGMRLRIAMGM 412
             K+ H+N V L GFC  +   + ++++EY   G+L E +   E    LDW  R RIA+G 
Sbjct: 850  GKIRHRNIVKLYGFCYHQN--SNLLLYEYMSKGSLGEQLQRGEKNCLLDWNARYRIALGA 907

Query: 413  AYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------AMAEMAATSK 465
            A  L ++H    P I H  + S+ + L E + A + D      I      +M+ +A +  
Sbjct: 908  AEGLCYLHHDCRPQIVHRDIKSNNILLDERFQAHVGDFGLAKLIDLSYSKSMSAVAGSYG 967

Query: 466  KLSSAPSASL----ESNVYNFGVLLFEMVTGRLPY--LVDNGSLEDWAADYLSGVQPLQQ 519
             ++   + ++    + ++Y+FGV+L E++TG+ P   L   G L +W    +  + P  +
Sbjct: 968  YIAPEYAYTMKVTEKCDIYSFGVVLLELITGKPPVQPLEQGGDLVNWVRRSIRNMIPTIE 1027

Query: 520  FVDPTLSSFDEEQLETLGELIK---SCVRADPEKRPTMRDIAAILREITG 566
              D  L + D+  +  +  ++K    C    P  RPTMR++ A++ E  G
Sbjct: 1028 MFDARLDTNDKRTVHEMSLVLKIALFCTSNSPASRPTMREVVAMITEARG 1077

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGD7|Y1684_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2

 Score =  153 bits (386), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 178/369 (48%), Gaps = 29/369 (7%)

Query: 230 SGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPK 289
           SG S+     I+ G +  A+ L A + + + R  ++      A           + GV  
Sbjct: 554 SGLSNGAVAGIVLGSVAAAVTLTAIIALIIMR-KRMRGYSAVARRKRSSKASLKIEGVKS 612

Query: 290 LKRSELEAACEDF--SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFR 347
              +EL  A ++F  S  IG    G VYKGTL +G  +A+      S +      E +F 
Sbjct: 613 FTYAELALATDNFNSSTQIGQGGYGKVYKGTLGSGTVVAIKRAQEGSLQG-----EKEFL 667

Query: 348 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR 407
            +I+ LS+++H+N V+L+GFC+EE    +M+V+EY  NGTL ++I +K  E LD+ MRLR
Sbjct: 668 TEIELLSRLHHRNLVSLLGFCDEEG--EQMLVYEYMENGTLRDNISVKLKEPLDFAMRLR 725

Query: 408 IAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK 466
           IA+G A  + ++H + NPPI H  + +S + L   + AK++D        + +M   S +
Sbjct: 726 IALGSAKGILYLHTEANPPIFHRDIKASNILLDSRFTAKVADFGLSRLAPVPDMEGISPQ 785

Query: 467 LSSA----------PSASL------ESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY 510
             S           P   L      +S+VY+ GV+L E+ TG  P       + +    Y
Sbjct: 786 HVSTVVKGTPGYLDPEYFLTHQLTDKSDVYSLGVVLLELFTGMQPITHGKNIVREINIAY 845

Query: 511 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD 570
            SG   +   VD  +SS  +E LE    L   C R + + RP+M ++   L  I  + P+
Sbjct: 846 ESG--SILSTVDKRMSSVPDECLEKFATLALRCCREETDARPSMAEVVRELEIIWELMPE 903

Query: 571 GAIPKLSPL 579
             + K + L
Sbjct: 904 SHVAKTADL 912

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	592
356569292	644	PREDICTED: probable LRR receptor-like se	0.930	0.855	0.61	0.0
356537999	638	PREDICTED: probable LRR receptor-like se	0.934	0.866	0.614	0.0
356551399	643	PREDICTED: probable LRR receptor-like se	0.942	0.867	0.599	0.0
357461359	645	Ser-thr protein kinase [Medicago truncat	0.956	0.877	0.600	0.0
356499209	645	PREDICTED: probable LRR receptor-like se	0.937	0.860	0.587	1e-178
449460929	680	PREDICTED: probable LRR receptor-like se	0.976	0.85	0.559	1e-176
356541803	629	PREDICTED: inactive receptor-like serine	0.988	0.930	0.537	1e-175
356569509	699	PREDICTED: probable LRR receptor-like se	0.989	0.838	0.530	1e-175
357441925	627	Ser-thr protein kinase [Medicago truncat	0.915	0.864	0.563	1e-175
449523573	657	PREDICTED: probable LRR receptor-like se	0.981	0.884	0.564	1e-171

>gi|356569292|ref|XP_003552837.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/600 (61%), Positives = 431/600 (71%), Gaps = 49/600 (8%)

Query: 3   VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           V+  NLKDLCLEG L PE+ +L HIKSIILRNNSF GIIPEG   L ELEVLD G+NNFS
Sbjct: 82  VVVLNLKDLCLEGNLVPELANLVHIKSIILRNNSFYGIIPEGIAHLNELEVLDLGYNNFS 141

Query: 63  GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYER 122
           GPLP DLG N SLTILLLDNND +   SPEI +L++LSE QVDE QL  A +K  +C  R
Sbjct: 142 GPLPRDLGNNISLTILLLDNNDHLCGFSPEINELKMLSEYQVDENQLIRA-EKVPAC-RR 199

Query: 123 SIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKAN 182
           SIK          Q R +  N  +N   R+L         P +   P +           
Sbjct: 200 SIKQ---------QSRHVGQN--KNGVQRLLQTRTHEGGSPFNRVFPVSPAPFPSAPPPA 248

Query: 183 ETSS---------DRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGS 233
             +          DRN+S SP      +P P P        S P+ + SSS++H      
Sbjct: 249 PATPPVVQKPAPVDRNNSASP------SPLPGPR-------SAPLYKSSSSKNHV----- 290

Query: 234 SSKHIAILGGVIGGAI-LLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKR 292
               + IL GV+GGA+ LL++ +G+YLC+ NKV+TVKPWATGLSGQLQ AFVTGVPKLKR
Sbjct: 291 ----VVILAGVMGGAVFLLISIIGLYLCKTNKVATVKPWATGLSGQLQNAFVTGVPKLKR 346

Query: 293 SELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDT 352
           SELEAACEDFSNVIG+S IGTVYKGTLS+GVEIAVASV+  S+KDW K LE QFR KIDT
Sbjct: 347 SELEAACEDFSNVIGTSSIGTVYKGTLSSGVEIAVASVAATSSKDWSKTLEAQFRNKIDT 406

Query: 353 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGM 412
           LSKVNHKNFVNL+G CEE+EPFTRM+VFEYAPNGTLFEH+HIKESEHLDWG RLRIAMGM
Sbjct: 407 LSKVNHKNFVNLLGHCEEDEPFTRMVVFEYAPNGTLFEHLHIKESEHLDWGTRLRIAMGM 466

Query: 413 AYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPS 472
           AYCL+HMHQL PP+  + LNSSAV LT+DYAAK+SDLSF NEIA A + + ++K +    
Sbjct: 467 AYCLQHMHQLEPPLVLSNLNSSAVQLTDDYAAKISDLSFLNEIASAVIKSPARKNTDMTP 526

Query: 473 ASLESNVYNFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
           A   SN+Y+FGV+LFEMVTGRLPY VDN GSL+DWA+ YL G QPL++ VDPTL+SF EE
Sbjct: 527 A---SNIYSFGVILFEMVTGRLPYSVDNDGSLDDWASHYLQGDQPLKEMVDPTLASFQEE 583

Query: 532 QLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEA 591
           QLE +  LIKSCV  D ++RPTM+++   LREIT ITPD A+PKLSPLWWAE+EI S  A
Sbjct: 584 QLEQVDALIKSCVHPDQKQRPTMKEVCVRLREITKITPDAAVPKLSPLWWAELEIASVNA 643

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537999|ref|XP_003537493.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/592 (61%), Positives = 436/592 (73%), Gaps = 39/592 (6%)

Query: 3   VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           V+  NLKDLCLEG L PE+ +L HIKSIILRNNSF GIIP+G   L E+EVLD G+NNFS
Sbjct: 82  VVVLNLKDLCLEGNLVPELANLVHIKSIILRNNSFHGIIPQGIAHLNEMEVLDLGYNNFS 141

Query: 63  GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE-QSCYE 121
           GPLP DLG N  LTILLLDNND +   SPEI +L+++SE QVDE QLSSA K   +S   
Sbjct: 142 GPLPTDLGNNIPLTILLLDNNDHLCGFSPEINELKMVSEYQVDENQLSSAEKVPIRSIKR 201

Query: 122 RSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKA 181
            + + NGV       R+LLQ+   R  +G            P +   P        D+ A
Sbjct: 202 HAGQNNGV-------RKLLQV---RTREGG----------SPFNRVFP--------DSPA 233

Query: 182 NETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAIL 241
              S+      +PP +  PAP    N + +P+P +P PR   S    KS  S +  + IL
Sbjct: 234 PFPSAPSPAPATPPVVQKPAPVDR-NNSASPSP-LPEPR---SAPLSKSSSSKNHLVVIL 288

Query: 242 GGVIGGAI-LLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACE 300
            GV+GG + LL++ +G+YLC+ NKV+TVKPWATGLSGQLQKAFVTGVPKLKRSELEAACE
Sbjct: 289 AGVMGGVVFLLISIIGLYLCKTNKVATVKPWATGLSGQLQKAFVTGVPKLKRSELEAACE 348

Query: 301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 360
           DFSNVIG+S IGTVYKGTLS+GVEIAVASV+  S+KDW K LE QFR KIDTLSKVNHKN
Sbjct: 349 DFSNVIGTSSIGTVYKGTLSSGVEIAVASVAATSSKDWSKTLEAQFRNKIDTLSKVNHKN 408

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH 420
           FVNL+G CEE+EPFTRM+VFEYAPNGTLFEH+HIKESEHLDWG RLR+AMGMAYCL+HMH
Sbjct: 409 FVNLLGHCEEDEPFTRMVVFEYAPNGTLFEHLHIKESEHLDWGTRLRVAMGMAYCLQHMH 468

Query: 421 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVY 480
           QL PP+  + LNSS V LT+DYAAK+SDLSF NEIA A + + ++K +    A   SN+Y
Sbjct: 469 QLEPPLVLSNLNSSGVQLTDDYAAKISDLSFLNEIASAVIKSPARKNTDMTPA---SNIY 525

Query: 481 NFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGEL 539
           +FGV+LFEMVTGRLPY VDN GSL+DWA+ YL G QPL++ VDPTL+SF EEQLE +  L
Sbjct: 526 SFGVILFEMVTGRLPYSVDNDGSLDDWASHYLQGDQPLKEMVDPTLASFQEEQLEQVDAL 585

Query: 540 IKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEA 591
           IKSCV  D ++RPTM+++   LREIT ITPD A+PKLSPLWWAE+EI S +A
Sbjct: 586 IKSCVHPDQKQRPTMKEVCVRLREITKITPDAAVPKLSPLWWAELEIASVDA 637

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551399|ref|XP_003544063.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/592 (59%), Positives = 428/592 (72%), Gaps = 34/592 (5%)

Query: 3   VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           V+  NLKDLCL GTLAPE+  L +IKSIILRNNSFSG IPEGF +L+ELEVLD G+NNFS
Sbjct: 82  VVVLNLKDLCLGGTLAPELVKLVNIKSIILRNNSFSGTIPEGFVQLKELEVLDLGYNNFS 141

Query: 63  GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYER 122
           G LP DLG N SLTILLLDNN+F+  LSPEI +L++LSE QVDE QL++AAK   +C ER
Sbjct: 142 GHLPADLGSNISLTILLLDNNEFLVGLSPEINELRMLSECQVDENQLTNAAKMP-ACTER 200

Query: 123 SIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKAN 182
           +             R + Q        G+    +  S+  P+++      V +      +
Sbjct: 201 A-----------TTRHIGQ--------GKGTRRSQHSNTSPAANHYQFNRVAAPPLESPS 241

Query: 183 ETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSS-SQSHQKSGGSSSKHIAIL 241
             S+  + S  PP      P  AP++      S P     S + S  KS  S    + IL
Sbjct: 242 SPSASPSGSAKPP-----VPKLAPHRKNASDSSPPHSTSGSGTLSKTKSTSSKVHTVPIL 296

Query: 242 GGVIGGAILLV-ATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACE 300
            GVIGGA+ L+ +++GIYLC+  KV+ V+PWA GLSGQLQKAFVTG  KLKRS+LEAACE
Sbjct: 297 AGVIGGAVFLIFSSIGIYLCK-TKVANVRPWAMGLSGQLQKAFVTGAQKLKRSDLEAACE 355

Query: 301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 360
           DFSNVIG+SPIG +YKGTLS GVEIAVA VS+ S+K+W K LE QFR KID LSKVNHKN
Sbjct: 356 DFSNVIGNSPIGILYKGTLSGGVEIAVAFVSITSSKNWSKTLEAQFRSKIDKLSKVNHKN 415

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH 420
           FVNLIG+CEEEEPFTRM+VFEYAPNGTLFEH+HIKE+EHLDWG RLR+A G+AYCL+HMH
Sbjct: 416 FVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWGTRLRVATGVAYCLQHMH 475

Query: 421 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVY 480
           QL+PP+A   LNSSAV+LT+DYAAKLSDLSF N+IA AE  A  K     P A+ ESNVY
Sbjct: 476 QLDPPMALIKLNSSAVYLTDDYAAKLSDLSFSNDIASAETRAMDK-----PLATPESNVY 530

Query: 481 NFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGEL 539
           + GVLLFEMVTGRLPY V++  SLE+WA+ YL   QPL++ VDP L S+ E+QLE +  L
Sbjct: 531 SLGVLLFEMVTGRLPYSVEHKDSLENWASHYLEVDQPLKEIVDPILVSYQEDQLEQVASL 590

Query: 540 IKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEA 591
           I SCV  DP+KRPTM+D++  LREIT ITP+ A+PKLSPLWWAEIEI S EA
Sbjct: 591 ITSCVHPDPQKRPTMKDVSERLREITKITPESAVPKLSPLWWAEIEIASAEA 642

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461359|ref|XP_003600961.1| Ser-thr protein kinase [Medicago truncatula] gi|355490009|gb|AES71212.1| Ser-thr protein kinase [Medicago truncatula]

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/593 (60%), Positives = 440/593 (74%), Gaps = 27/593 (4%)

Query: 3   VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           V+  NLK+LCLEG LA E+ SL HIKSI+LRNNSF GIIPEG   L+ELEVLD G+NNFS
Sbjct: 75  VVVLNLKNLCLEGNLAHELGSLVHIKSIVLRNNSFYGIIPEGIVRLKELEVLDLGYNNFS 134

Query: 63  GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYER 122
           GPLP D+G N SL ILLLDNND +   S EI +L ++SESQVDE QL SA +K   C  R
Sbjct: 135 GPLPKDIGSNISLAILLLDNNDLLCGFSHEINELVLISESQVDEKQLISA-RKLPGCTGR 193

Query: 123 SIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKAN 182
           S KW+    +  + RRLLQ              AP   P   +  IP     S   +   
Sbjct: 194 STKWHNRRSKKGL-RRLLQSG------------APREDPRNRAAIIPDTPSPSPSPSPFP 240

Query: 183 ETSSDRNDSV--SPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAI 240
             S   + S   +P  +  PA   +P++  + +PS P+P P S    Q    S++ H+AI
Sbjct: 241 SPSPSPSPSSSETPQIVKKPA---SPDRNVSDSPS-PLPTPGSVP--QLKSNSNNHHVAI 294

Query: 241 LGGVIGGA-ILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAAC 299
           +GG++GGA  +L+ ++ IYL + NKV+TVKPWATGLSGQLQKAFVTGVPKLKRSELEAAC
Sbjct: 295 VGGIVGGAAFILILSIVIYLFKTNKVATVKPWATGLSGQLQKAFVTGVPKLKRSELEAAC 354

Query: 300 EDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
           EDFSNVIG+SPIG +YKGTLS+GVEIAVASV+V S KDW K  EVQFRKKIDTLSK+NHK
Sbjct: 355 EDFSNVIGTSPIGNIYKGTLSSGVEIAVASVTVTSLKDWSKTSEVQFRKKIDTLSKMNHK 414

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 419
           NFVNL+GFCEE+EPFTRM+VFEYAPNGTLFEH+H+KE+EHLDW  RLR+A+G AYCL+HM
Sbjct: 415 NFVNLLGFCEEDEPFTRMVVFEYAPNGTLFEHLHVKEAEHLDWATRLRVAIGTAYCLQHM 474

Query: 420 HQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNV 479
           HQL+PP AH+ LN+S+V LT+DYAAK+SDLSF NEIA A++ A +KK +    A+L SN+
Sbjct: 475 HQLDPPFAHSDLNTSSVQLTDDYAAKISDLSFLNEIASADIKAAAKKHT---DATLASNI 531

Query: 480 YNFGVLLFEMVTGRLPY-LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE 538
           Y+FG++L E+VTGR+PY +  + SLE+WA+ YL G QPL++ VDPTL+SF EEQL  +G 
Sbjct: 532 YSFGIILLEIVTGRVPYSMGKDDSLEEWASRYLQGDQPLKEIVDPTLASFQEEQLVQIGA 591

Query: 539 LIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEA 591
           LIKSCV AD E+RPTM+ I   LREIT I+P+ A+PKLSPLWWAE+EI S +A
Sbjct: 592 LIKSCVNADQEQRPTMKQICERLREITKISPEVAVPKLSPLWWAELEIASFDA 644

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499209|ref|XP_003518434.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max]

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 350/596 (58%), Positives = 421/596 (70%), Gaps = 41/596 (6%)

Query: 3   VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           V+  NLKDLCL GTL PE+  L +IKSIILRNNSFSGIIPEGF ELEELEVLD G+N FS
Sbjct: 83  VVALNLKDLCLGGTLGPELVKLVNIKSIILRNNSFSGIIPEGFVELEELEVLDLGYNYFS 142

Query: 63  GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYER 122
           G LP DL  + SL ILLLDNNDF+   SPEI +L++LSE QVDE +L++AAK   +C +R
Sbjct: 143 GHLPADLRSDISLAILLLDNNDFLVGFSPEINELRMLSECQVDENKLTNAAKMP-ACTKR 201

Query: 123 SIKWNGVLDEDTVQRRLLQINPF-RNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKA 181
              WN  +D+    R LLQ     R  +G    +A                         
Sbjct: 202 VTTWN--IDQGKSTRGLLQQKAKPRTNQGHFYRVADPPV---------------KSSPPP 244

Query: 182 NETSSDRNDSVSPPKLS----NPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKH 237
              S   +     PKL+    N + +P P+ TP           S + S  +S       
Sbjct: 245 PSASPSASAKPPGPKLAPHRKNGSDSPPPHSTPG----------SGTLSKTESNSPKVHT 294

Query: 238 IAILGGVIGGAILLV-ATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELE 296
             IL GVIGGA+ L+ +++GIYLC+  KV+ V+PWATGLSGQLQKAFVTG  KL+RS+LE
Sbjct: 295 FPILPGVIGGAVFLIFSSIGIYLCK-TKVANVRPWATGLSGQLQKAFVTGAQKLRRSDLE 353

Query: 297 AACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 356
           AACEDFSNVIG+SPIGT+YKGTLS+GVEIAVA V V S+++W K LE QFR KIDTLSKV
Sbjct: 354 AACEDFSNVIGTSPIGTLYKGTLSSGVEIAVAFVPVTSSRNWSKTLEAQFRSKIDTLSKV 413

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 416
           NHKNFVNLIG+CEEE+PFTR++VFEYAPNGTLFEH+HIKE+EHLDWG RLR+A GMAYCL
Sbjct: 414 NHKNFVNLIGYCEEEDPFTRVLVFEYAPNGTLFEHLHIKEAEHLDWGTRLRVATGMAYCL 473

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLE 476
           +HMHQL+PP+    LNSSAV+LT DYAAKLSDLSF N+I  AE  A        P A+ E
Sbjct: 474 QHMHQLDPPMTLIKLNSSAVYLTNDYAAKLSDLSFSNDITSAEARAI-----DMPIATPE 528

Query: 477 SNVYNFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET 535
           SNVY+FGVLLFEMVTGRLPY V++  SLE+WA+ YL G QPL + VDP L S+ E+QLE 
Sbjct: 529 SNVYSFGVLLFEMVTGRLPYSVEHRDSLENWASHYLEGDQPLIEMVDPILVSYQEDQLEQ 588

Query: 536 LGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEA 591
           +  LI SCV  DP++RPTM+D++  LREIT ITP+ A+PKLSPLWWAE+EI S EA
Sbjct: 589 VAALITSCVHPDPQQRPTMKDVSERLREITKITPESAVPKLSPLWWAELEIASAEA 644

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460929|ref|XP_004148196.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Cucumis sativus]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 337/602 (55%), Positives = 423/602 (70%), Gaps = 24/602 (3%)

Query: 3   VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           V+  NLKDLCLEGTL PE+++L HIKSI LRNNSF+G IP+G G LEELEVLD G+NNF 
Sbjct: 84  VVSLNLKDLCLEGTLTPELKNLVHIKSINLRNNSFTGTIPQGLGGLEELEVLDLGYNNFC 143

Query: 63  GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYER 122
           GPLP+DLG N SL ILLLDNN  + SLSPEIY+LQ+LSE QVDE QLS+ A+    C + 
Sbjct: 144 GPLPSDLGSNLSLGILLLDNNKDLRSLSPEIYQLQLLSEFQVDENQLSNTAEGSL-CNKE 202

Query: 123 SIKWNGVLDEDTVQRRLLQINPFR---NLKGRILGIA-PTSSPPPS---SD--------- 166
           S+  + V  +D+  RR L+ +  +    ++GR+  +  P + P PS   SD         
Sbjct: 203 SMSCDAVQVKDSRGRRELRASASQAQLTIQGRVAEVVVPLTPPSPSGGNSDRPPSNSPPP 262

Query: 167 AIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQS 226
           + P  + GS         S+  N +  PP       AP+    P     +P P+PSS Q 
Sbjct: 263 SPPAGAQGSQPPPPGTGISTSNNATSPPPSFK----APSEKTPPAAPEGLPSPQPSSKQQ 318

Query: 227 HQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTG 286
             K+  S    + +  G     I L   VGIYL   NK +TVKPWATGLSGQLQKAFVTG
Sbjct: 319 GGKNKSSVGVVVGVSVGAAVFVIALA--VGIYLWTNNK-ATVKPWATGLSGQLQKAFVTG 375

Query: 287 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQF 346
           VPKLKRSELE +CEDFSNVIG SPIG VYKGTLS+GVEIAV  +SV S+KDW   LE QF
Sbjct: 376 VPKLKRSELEVSCEDFSNVIGYSPIGPVYKGTLSSGVEIAVNIISVKSSKDWSMALEAQF 435

Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 406
           RKKIDTLSK+NHKNFVNLIG+CEEEEPF+RMMVFEYAPNGT+FEH+H +E EHL+W MR+
Sbjct: 436 RKKIDTLSKINHKNFVNLIGYCEEEEPFSRMMVFEYAPNGTVFEHLHDEEFEHLNWRMRM 495

Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK 466
           RI MGMAY LE++H+ + P+ H  L SSAV+LTEDYAAK+++ S  N+I   E   TS  
Sbjct: 496 RIVMGMAYSLEYLHEQSAPLIHLNLTSSAVNLTEDYAAKIAECSLQNKIVANERNCTSGH 555

Query: 467 LSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 526
           L +  S   ES +Y+FG++L E++TGR+P+   NG+LE WA  YL   +PL++ +DPTL+
Sbjct: 556 LLNTSSGGPESQIYSFGLVLLELMTGRIPHSAQNGTLEGWAIQYLKLDKPLKELIDPTLT 615

Query: 527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEI 586
           SF EEQLE +G+L++SC+ ++PE+RPTM+ I + LR ITGITPD AIP+LSPLWWAE+EI
Sbjct: 616 SFQEEQLEQIGQLLRSCLHSNPEQRPTMKLITSRLRLITGITPDEAIPRLSPLWWAELEI 675

Query: 587 LS 588
            S
Sbjct: 676 AS 677

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541803|ref|XP_003539362.1| PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270-like [Glycine max]

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 330/614 (53%), Positives = 425/614 (69%), Gaps = 29/614 (4%)

Query: 3   VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           V  RNLKDLCL G LAPEI  L HIKSII RNN F G IP+   +LE+LEVLD G NNFS
Sbjct: 12  VFARNLKDLCLHGILAPEIGKLVHIKSIIFRNNYFYGDIPKEILQLEDLEVLDLGFNNFS 71

Query: 63  GPLP-NDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYE 121
           G  P +DL    SLT LLLDNND + SL+PE+Y+L+  SE  VDE QL+ A  +E +C  
Sbjct: 72  GQFPFHDLASYPSLTTLLLDNNDNLASLTPEVYELKTFSELHVDEEQLTGATTRE-ACAS 130

Query: 122 RSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKA 181
            +  W+     D   RR L     R+ +G       + SP PS+ + P     SS ++ +
Sbjct: 131 ITNNWHIGQHGDIASRRKLLQAANRSKRGDDEKETLSPSPFPSTLS-PVLEPFSSSESPS 189

Query: 182 NETSSDRNDSVSP-PKLSN----PAPAPAPNQTPTPTPSIP-----------------IP 219
           +   S    S SP P LS      +P+P+P   PTP  S P                 +P
Sbjct: 190 DSPISSPEISHSPSPSLSTFFFILSPSPSPEVAPTPDLSPPANPPMVVFTPPQSNWGSMP 249

Query: 220 RPSSSQSHQKSGGSSSK-HIAILGGVIGG-AILLVATVGIYLC-RCNKVSTVKPWATGLS 276
            P+SS +   +  S++K H  I+   +GG + L++ +  ++ C R NKV TVKPWATGLS
Sbjct: 250 SPASSSNQGNAYSSNTKQHTVIIWSTVGGFSFLILVSAIVFACFRSNKVVTVKPWATGLS 309

Query: 277 GQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK 336
           GQLQKAFV+GVP LKR+ELE ACEDFSN+IGS P GT+YKGTLS+GVEIAVAS +V S++
Sbjct: 310 GQLQKAFVSGVPSLKRTELEVACEDFSNIIGSLPEGTIYKGTLSSGVEIAVASSAVTSSQ 369

Query: 337 DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE 396
           DW K +E QFRKKI+ LS+VNHKNFVNLIG+CEE +PFTRMMVFEYAPNGTLFEH+HI+E
Sbjct: 370 DWSKKMETQFRKKIEMLSRVNHKNFVNLIGYCEENKPFTRMMVFEYAPNGTLFEHLHIRE 429

Query: 397 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 456
           +E LDWGMR+RIA+G+AYCLEH+HQL PPIA+  + SS+++LTEDYAAKLSDLS W +I 
Sbjct: 430 AEQLDWGMRMRIAVGIAYCLEHLHQLTPPIAYRNILSSSMYLTEDYAAKLSDLSLWTDIV 489

Query: 457 MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
             +  + + +L    SA +++NVY+FGVLLFE++TGR+P+ ++NG  EDWAA+Y+ G QP
Sbjct: 490 STKKGSEAPQLLETASAYIKANVYSFGVLLFELITGRIPFAMENGLFEDWAAEYMKG-QP 548

Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 576
           L+  VD +L+S    ++E   E+I SCV  DPEKRPTMR++ A L+EIT + PDGA PK 
Sbjct: 549 LKDLVDTSLNSLQANEIEKWEEVINSCVHQDPEKRPTMREVTAKLKEITAMGPDGATPKA 608

Query: 577 SPLWWAEIEILSTE 590
           SPLWWAEIEI+ ++
Sbjct: 609 SPLWWAEIEIMPSD 622

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569509|ref|XP_003552942.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45840-like [Glycine max]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 325/613 (53%), Positives = 417/613 (68%), Gaps = 27/613 (4%)

Query: 3   VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           V+  NLKDLCL GTLA EI  L HIKSIILRNN F G IP+   +LE+LEVLD G+NNFS
Sbjct: 82  VVSLNLKDLCLHGTLALEIGKLVHIKSIILRNNYFYGDIPKEILQLEDLEVLDLGYNNFS 141

Query: 63  GPLP-NDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYE 121
           G  P +DL    SLT LLLDNND + SL+PE+Y+L+  SE  V E QL+ A  +E +C  
Sbjct: 142 GQFPFHDLATYPSLTTLLLDNNDHLASLTPEVYELKTFSELHVAEEQLTGATTRE-ACVR 200

Query: 122 RSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKA 181
            +  W+     D   RR L        +G       + SP PS+ +        S+    
Sbjct: 201 ITNNWHIGTHGDIASRRALLQEANGEKRGDDDTETLSPSPFPSTLSPFSEPFSPSESPSD 260

Query: 182 NET--------------------SSDRNDSVSP-PKLSNPAPAPAPNQTPTPTPSIPIPR 220
           +                      S   +  V+P P LS PA  P    TP  +  + +P 
Sbjct: 261 SPISSPEVSPSPSPSLSNFFFTLSPSPSPEVAPTPDLSPPANPPMVVSTPPQSNWVSMPS 320

Query: 221 PSSSQSHQKSGGSSSK-HIAILGGVIGGA--ILLVATVGIYLCRCNKVSTVKPWATGLSG 277
           P+SS +   +  S+ K H AI+   +GG   ++LV+ +     R NKV TVKPW TGLSG
Sbjct: 321 PASSSNQGNANSSNPKQHTAIIWSTVGGFSFLILVSAIAFVCFRSNKVVTVKPWTTGLSG 380

Query: 278 QLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKD 337
           QLQKAFV+GVP LKR+ELE ACEDFSN+IGS P GT+YKGTLS+GVEI VAS +V S+++
Sbjct: 381 QLQKAFVSGVPSLKRTELEVACEDFSNIIGSLPEGTIYKGTLSSGVEIGVASSAVTSSQN 440

Query: 338 WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES 397
           W KN+E QFRKKI+ LS+VNHKNFVNLIG+CEE +PFTRMMVFEYAPNGTLFEH+HI+E+
Sbjct: 441 WSKNMETQFRKKIEMLSRVNHKNFVNLIGYCEENKPFTRMMVFEYAPNGTLFEHLHIREA 500

Query: 398 EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM 457
           E LDWGMR+RIAMG+AYCLEH+HQL PPIA+  + SS+++LTEDYAAKLSDLSFW +I  
Sbjct: 501 EQLDWGMRMRIAMGIAYCLEHLHQLTPPIAYRNILSSSIYLTEDYAAKLSDLSFWTDIVS 560

Query: 458 AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL 517
            +  + + +L   PSA +++NVY+FGVLLFE++TGR+P+ V+NG  EDWA +Y+ G QPL
Sbjct: 561 TKKGSEAPQLLETPSAYIKANVYSFGVLLFELITGRIPFAVENGLFEDWAEEYMKG-QPL 619

Query: 518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLS 577
           +  VD +L+S    ++E   E++KSCV  DPEKRPTMR++ A L+EIT + PDGA PK S
Sbjct: 620 RDLVDTSLNSLQANEIEKWEEVVKSCVHPDPEKRPTMREVTAKLKEITAMGPDGATPKAS 679

Query: 578 PLWWAEIEILSTE 590
           PLWWAEIEI+S++
Sbjct: 680 PLWWAEIEIMSSD 692

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441925|ref|XP_003591240.1| Ser-thr protein kinase [Medicago truncatula] gi|355480288|gb|AES61491.1| Ser-thr protein kinase [Medicago truncatula]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 335/594 (56%), Positives = 418/594 (70%), Gaps = 52/594 (8%)

Query: 3   VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           V+  NLKDLCLEGTLAPE+ +L HIKSIILRNNSF G IPE   +L++LE+LD G+NNFS
Sbjct: 77  VVVLNLKDLCLEGTLAPELVNLVHIKSIILRNNSFYGTIPEEIVDLKQLEILDLGYNNFS 136

Query: 63  GPLPNDLGIN-HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYE 121
           G L  + G N  SL ILLLDNN+ +   SP+I +L++LSE QVD+ QL +A K   SC E
Sbjct: 137 GHLDANFGHNITSLAILLLDNNELLIGFSPKINELKMLSEYQVDKNQLINADKM-SSCSE 195

Query: 122 RSIKWNGVLDEDTVQRRLLQIN-----PFRNLKGRILGIAPTSSPPPSSDAIPPASVGSS 176
           RSI W+  + E+   R L + +     P++    R       +SP   S     +S  S 
Sbjct: 196 RSITWH--VHENEGPRSLQEYHQHHRRPYQYRHNR-------TSPLYRSFPSHSSSPSSD 246

Query: 177 DDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSK 236
              +    S ++N S S P LS        NQ P                          
Sbjct: 247 SPIQNASESPNKNASDSLPPLS------KKNQVPI------------------------- 275

Query: 237 HIAILGGVIGGAILLV-ATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSEL 295
                G +IGGA+ LV +++GIYLC+ NK++ V+PW+TG+SGQLQKA VTGVPKL RS+L
Sbjct: 276 ---FAGVIIGGAVFLVISSIGIYLCKTNKLAIVRPWSTGISGQLQKALVTGVPKLNRSDL 332

Query: 296 EAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK 355
           EAACEDFSNVIG+SPIGT+YKGTLS+GVEIAVASVSV  +K W + LE QFRKKIDTLSK
Sbjct: 333 EAACEDFSNVIGNSPIGTLYKGTLSSGVEIAVASVSVTLSKSWTRTLETQFRKKIDTLSK 392

Query: 356 VNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYC 415
           VNHKNFVNLIG+CEEEEPFTRM+VFEYAPNGTLFEH+HIKE EHL+WG RLRIAMGMAYC
Sbjct: 393 VNHKNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHIKEGEHLNWGPRLRIAMGMAYC 452

Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK-LSSAPSAS 474
           L+HMH L+PP+    LNSS+VHLT+D+AAK SDLSF NEI  +E  +  +K +    SAS
Sbjct: 453 LQHMHGLDPPVVLINLNSSSVHLTDDHAAKTSDLSFSNEIDSSEKKSDGRKHIDMMQSAS 512

Query: 475 LESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE 534
             SNVY+FGVLLFE+VTGR+PY VDN S E+WA+ YL   +PL++ VDPTL+S+ E+Q+E
Sbjct: 513 PSSNVYSFGVLLFEIVTGRIPYSVDNSSHENWASHYLKWDKPLKEMVDPTLASYQEDQVE 572

Query: 535 TLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILS 588
            + ELI+ CV  D +KRPTM++++  LREIT ++P+  +PKLSPLWWAEIEI S
Sbjct: 573 QVAELIRVCVDPDSDKRPTMKEVSEKLREITKMSPEIVVPKLSPLWWAEIEISS 626

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523573|ref|XP_004168798.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Cucumis sativus]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 345/611 (56%), Positives = 429/611 (70%), Gaps = 30/611 (4%)

Query: 3   VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           V+  NL+DLCL GTLAPE+    +IKSIILRNNSF G IP+  G+L ELEVLD G NNFS
Sbjct: 52  VVILNLRDLCLGGTLAPEMGKFPYIKSIILRNNSFHGGIPQEIGDLLELEVLDLGFNNFS 111

Query: 63  GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYER 122
           GP P DLG N SLT LLLD+N+F+ S++PE Y+L +LSE+ +DE QLSS   K  SC   
Sbjct: 112 GPFPLDLGNNLSLTTLLLDHNEFITSITPEAYELNLLSETLMDEEQLSSIQGK-SSCTRE 170

Query: 123 SIKWN--GVLDEDTVQRRLLQI-NPFRNLKGRILGIAPTSSPPPSSDAI----------- 168
           +++WN     D D  +RRL  + +P R+          +S  P S  A            
Sbjct: 171 TVRWNFGQFQDADYQRRRLGGVQSPKRSFFSLPPSSFASSPSPLSPSAPPFSPAPSPRSP 230

Query: 169 ------PPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPS 222
                 PPA + S     +   +  R     PP ++    AP    TP  +  +P PR S
Sbjct: 231 SASPTEPPAPLLSLAPAPSLHLNPAR-----PPAVAPTLHAPVHVLTPPHSRGVP-PRSS 284

Query: 223 SSQSH--QKSGGSSSKHIAILGGVIGGAI-LLVATVGIYLCRCNKVSTVKPWATGLSGQL 279
           +   +   +S  + +  + IL G++ G++ LL ATVGI + R +KV TVKPWATGLSGQL
Sbjct: 285 APSPNLIGRSNKNKNHKVLILTGIVAGSLFLLFATVGILMFRSSKVVTVKPWATGLSGQL 344

Query: 280 QKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP 339
           QKAFVTGVPKLKRSELEAACEDFSN+IGS    TVYKGTLS+GVEIAV S +V S  DW 
Sbjct: 345 QKAFVTGVPKLKRSELEAACEDFSNIIGSFSDITVYKGTLSSGVEIAVTSTAVTSNADWS 404

Query: 340 KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH 399
           K  E QFRKKI+TLS+VNHKNFV+LIGFCEE +PFTRMMVFEYAPNGTLFEH+HIKE+EH
Sbjct: 405 KTKEEQFRKKIETLSRVNHKNFVSLIGFCEEAQPFTRMMVFEYAPNGTLFEHLHIKEAEH 464

Query: 400 LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 459
           LDW MRLRIAMG+AYCL+HMHQL+ P+ H +L SS+V+LTEDYAAKLSD S+W+E   A+
Sbjct: 465 LDWEMRLRIAMGVAYCLDHMHQLDLPVVHRHLCSSSVYLTEDYAAKLSDFSYWSEATAAK 524

Query: 460 MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ 519
           + + + +L     A LESNVY+FGV+L EM+TGRLP+ VD+GSL DWA+D+L G Q L+ 
Sbjct: 525 LGSATVELLETSPADLESNVYSFGVILLEMITGRLPFSVDDGSLADWASDFLKGEQLLKD 584

Query: 520 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPL 579
            VDP LSSF EEQLE L ++IK CV+ +P++RPTM +IA  L+EIT + P GA PKLSPL
Sbjct: 585 IVDPILSSFKEEQLENLSQVIKMCVKPEPKQRPTMPEIALRLKEITALEPAGATPKLSPL 644

Query: 580 WWAEIEILSTE 590
           WWAE+EILST+
Sbjct: 645 WWAELEILSTD 655

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	592
TAIR|locus:2124102	678	MRH1 "morphogenesis of root ha	0.564	0.492	0.529	6.2e-112
TAIR|locus:2063146	489	AT2G40270 [Arabidopsis thalian	0.560	0.678	0.588	6.3e-108
TAIR|locus:2078436	499	AT3G56050 [Arabidopsis thalian	0.560	0.665	0.587	1.7e-107
TAIR|locus:2182915	553	AT5G07150 [Arabidopsis thalian	0.361	0.386	0.553	1e-99
TAIR|locus:2171233	484	AT5G58540 [Arabidopsis thalian	0.542	0.663	0.5	2.4e-83
TAIR|locus:2163056	664	AT5G41180 [Arabidopsis thalian	0.491	0.438	0.339	6.1e-60
TAIR|locus:2036636	632	NIK3 "NSP-interacting kinase 3	0.445	0.417	0.282	7.2e-33
TAIR|locus:2169965	1003	BAM1 "BARELY ANY MERISTEM 1" [	0.451	0.266	0.295	1.2e-32
TAIR|locus:2165981	620	BIR1 "AT5G48380" [Arabidopsis	0.363	0.346	0.310	9.3e-32
TAIR|locus:2051404	775	SRF1 "STRUBBELIG-receptor fami	0.464	0.354	0.281	1e-31

TAIR|locus:2124102 MRH1 "morphogenesis of root hair 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 6.2e-112, Sum P(2) = 6.2e-112
 Identities = 179/338 (52%), Positives = 244/338 (72%)

Query:   257 IYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYK 316
             I+ CR   V ++ PW TGLSGQLQKAFVTGVPKL RSELE ACEDFSN+I +    TVYK
Sbjct:   341 IFFCRKRAVKSIGPWKTGLSGQLQKAFVTGVPKLNRSELETACEDFSNIIETFDGYTVYK 400

Query:   317 GTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR 376
             GTLS+GVEI          K+W + +E+ +R+KIDTLS++NHKNFVNLIG+CEE++PF R
Sbjct:   401 GTLSSGVEIAVASTAIAESKEWTRAMEMAYRRKIDTLSRINHKNFVNLIGYCEEDDPFNR 460

Query:   377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV 436
             MMVFEYAPNGTLFEH+H KE+EHLDW  R+RI MG AYCL+HMH +NPP+AH   NSS +
Sbjct:   461 MMVFEYAPNGTLFEHLHDKETEHLDWSARMRIIMGTAYCLQHMHGMNPPMAHTDFNSSEI 520

Query:   437 HLTEDYAAKLSDLSFWNEIAM---AEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR 493
             +LT+DYAAK+S++ F  E  +     +                 NV++FGVL+ E+++G+
Sbjct:   521 YLTDDYAAKVSEIPFNLEARLNPKKHVSGDLEQTSLLLPPEPEANVHSFGVLMLEIISGK 580

Query:   494 LPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 553
             L +  + GS+E WA+ YL     L + +DP+L +F EE+LE + ++I+ C++ +  +RP+
Sbjct:   581 LSFSDEYGSIEQWASKYLEK-DDLGEMIDPSLKTFKEEELEVICDVIRECLKTEQRQRPS 639

Query:   554 MRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEA 591
             M+D+A  L+++  ITP+ A P+ SPLWWAE+EILS+EA
Sbjct:   640 MKDVAEQLKQVINITPEKATPRSSPLWWAELEILSSEA 677

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048765 "root hair cell differentiation" evidence=RCA;IMP

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2063146 AT2G40270 [Arabidopsis thaliana (taxid:3702)]

 Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
 Identities = 197/335 (58%), Positives = 249/335 (74%)

Query:   256 GIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVY 315
             G+Y        TV PW TGLSGQLQK FVTG+P LKRSE+EAACEDFSNVIGS PIG ++
Sbjct:   156 GLYFFTSKAGKTVNPWRTGLSGQLQKVFVTGIPVLKRSEIEAACEDFSNVIGSCPIGKLF 215

Query:   316 KGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT 375
             KGTLS+GVEI          KDW  + E+ FRKKI+ LSK+NHKNF NL+G+CEE+EPFT
Sbjct:   216 KGTLSSGVEIAVASFATTTAKDWKDSTEIHFRKKIEMLSKINHKNFANLLGYCEEKEPFT 275

Query:   376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSA 435
             R+++FEYAPNG+LFEH+H KESEHLDWGMRLRIAMG+AYCL+HMHQLNPPIAH  L SS+
Sbjct:   276 RILIFEYAPNGSLFEHLHYKESEHLDWGMRLRIAMGLAYCLDHMHQLNPPIAHTNLVSSS 335

Query:   436 VHLTEDYAAKLSDLSFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLP 495
             + LTEDYA K+SD SF +      +                 N+Y+FG+LLFEM+TG+L 
Sbjct:   336 LQLTEDYAVKVSDFSFGSSETETNINNNTVIDTHISALNPEDNIYSFGLLLFEMITGKLI 395

Query:   496 YLVDN-GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTM 554
               V+   S++    D+L G + L + VDPTL S+D + +E +GE+IKSC+R DP++RPTM
Sbjct:   396 ESVNKPDSVDSSLVDFLRG-ETLAKMVDPTLESYDAK-IENIGEVIKSCLRTDPKERPTM 453

Query:   555 RDIAAILREITGITPDGAIPKLSPLWWAEIEILST 589
             +++   LREITG++P+ A PKLSPLWWAE+E+LST
Sbjct:   454 QEVTGWLREITGLSPNDATPKLSPLWWAELEVLST 488

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2078436 AT3G56050 [Arabidopsis thaliana (taxid:3702)]

 Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
 Identities = 198/337 (58%), Positives = 253/337 (75%)

Query:   256 GIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVY 315
             G++  +     +V PW TGLSGQLQK F+TGVPKLKRSE+EAACEDFSNVIGS PIGT++
Sbjct:   164 GVFFFKSKAGKSVNPWRTGLSGQLQKVFITGVPKLKRSEIEAACEDFSNVIGSCPIGTLF 223

Query:   316 KGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT 375
             KGTLS+GVEI          K+W  N+E+QFRKKI+ LSK+NHKNFVNL+G+CEEEEPFT
Sbjct:   224 KGTLSSGVEIAVASVATASAKEWTNNIEMQFRKKIEMLSKINHKNFVNLLGYCEEEEPFT 283

Query:   376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSA 435
             R++VFEYA NGT+FEH+H KESEHLDW MRLRIAMG+AYCL+HMH L PPI H+ L SS+
Sbjct:   284 RILVFEYASNGTVFEHLHYKESEHLDWVMRLRIAMGIAYCLDHMHGLKPPIVHSNLLSSS 343

Query:   436 VHLTEDYAAKLSDLSFW--NEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR 493
             V LTEDYA K++D +F      +  E                  NV++FG+LLFE++TG+
Sbjct:   344 VQLTEDYAVKIADFNFGYLKGPSETESSTNALIDTNISETTQEDNVHSFGLLLFELMTGK 403

Query:   494 LPYLVDNG-SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP 552
             LP  V  G S++   A +L G + L++ VDPT+ SFDE+ +E +GE+IKSC+RAD ++RP
Sbjct:   404 LPESVQKGDSIDTGLAVFLRG-KTLREMVDPTIESFDEK-IENIGEVIKSCIRADAKQRP 461

Query:   553 TMRDIAAILREITGITPDGAIPKLSPLWWAEIEILST 589
              M+++   LREITG++PD  IPKLSPLWWAE+E+LST
Sbjct:   462 IMKEVTGRLREITGLSPDDTIPKLSPLWWAELEVLST 498

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2182915 AT5G07150 [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 1.0e-99, Sum P(3) = 1.0e-99
 Identities = 130/235 (55%), Positives = 164/235 (69%)

Query:   264 KVSTVKPWA-TGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGS-SPIGTVYKGTLSN 321
             KV  +KPW  TG SGQLQ    TGVPKLK +ELE ACEDFSN+IGS S   T+YKGTLS 
Sbjct:   257 KVKLIKPWGETGSSGQLQDVVTTGVPKLKLAELETACEDFSNIIGSTSSDATIYKGTLST 316

Query:   322 GVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE 381
             G EI          +DW ++ E QF++K   LS+VNHKNF+N+IG+C E+EPF RM+VFE
Sbjct:   317 GSEIAVLAVASGSLQDWSEDHETQFQEK--RLSQVNHKNFLNVIGYCHEDEPFNRMLVFE 374

Query:   382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP-PIAHNYLNSSAVHLTE 440
             YAPNG+LFEH+H +++EHLDW MRLRI MG+AYC+EHMH LNP PI+H  LNSS+V+L  
Sbjct:   375 YAPNGSLFEHLHDQDAEHLDWPMRLRIVMGIAYCMEHMHNLNPKPISHTNLNSSSVYLAT 434

Query:   441 DYAAKLSDLSFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLP 495
             DYAAK+SD +F +   +  M                 NV +FG LL E++TG++P
Sbjct:   435 DYAAKVSDFTFLSSTPLDPMT----------------NVSSFGALLQEIITGKIP 473

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2171233 AT5G58540 [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 167/334 (50%), Positives = 219/334 (65%)

Query:   257 IYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYK 316
             I+L    K+  +KPW    SGQL+   +T VP+L+ SEL+AACEDFSNVIGS   GT+YK
Sbjct:   162 IFLILTRKIP-IKPWTN--SGQLRDDLITDVPRLQLSELQAACEDFSNVIGSFSDGTIYK 218

Query:   317 GTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR 376
             GTLS G EI           DW   ++ Q  +K+  LSKV+HKNF+N+IG+C EEEPF R
Sbjct:   219 GTLSTGAEIAVVSIVAGSRSDWSTTMDTQLLQKMHNLSKVDHKNFLNVIGYCLEEEPFKR 278

Query:   377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV 436
             M+VFEYAPNG+L EH+H +  EHLDW  RLRI MG+AYCLEHMH LNPPI  + L+SS+V
Sbjct:   279 MLVFEYAPNGSLSEHLHSQYVEHLDWPTRLRIVMGIAYCLEHMHNLNPPILLSNLDSSSV 338

Query:   437 HLTEDYAAKLSDLSFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPY 496
             +LTED AAK+SD S  N I  ++                  NV+NFG +LFE+++G+LP 
Sbjct:   339 YLTEDNAAKVSDFSVINSIFPSKEGSSSKNLLEPSLLDPHTNVFNFGAVLFEIISGKLP- 397

Query:   497 LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRD 556
               D  S+       L   +P +  VDPTL +F E  +E L E+++ C+    ++RPTMR+
Sbjct:   398 --DPDSM-------LLEPKPTRDIVDPTLKTFQENVVERLLEVVRQCLNPYSDQRPTMRE 448

Query:   557 IAAILREITGITPDGAIPKLSPLWWAEIEILSTE 590
             +   LREITGI  D A+P+LSP WW E+EI+STE
Sbjct:   449 VVVKLREITGIEADAAMPRLSPRWWTELEIISTE 482

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2163056 AT5G41180 [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
 Identities = 106/312 (33%), Positives = 168/312 (53%)

Query:   259 LCRCNKVSTVKPWATGLSGQ------LQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIG 312
             LC+  + S + PW    S +      +    +  V +  R ELE ACEDFSN+I SS   
Sbjct:   302 LCKIKR-SLIVPWKKSASEKEKFTVYVDSEMLKDVSRYTRQELEVACEDFSNIIDSSAES 360

Query:   313 TVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE 372
              +YKGT+  G EI          ++W   LE+ F++++  L+++NH+N   L+G+C+E  
Sbjct:   361 QIYKGTIKGGTEIAVISLCVKE-ENWTGYLELNFQREVAALARLNHENAGKLLGYCKEST 419

Query:   373 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYL 431
             PFTRM+VFEYA NGTL++H+H  +   + W  R++I +G+A  L+++H +L+PP   + L
Sbjct:   420 PFTRMLVFEYASNGTLYDHLHYADGSLVSWAKRMKIVIGIARGLKYLHTELHPPFTVSEL 479

Query:   432 NSSAVHLTEDYAAKLSDLSFWNEIAM-AEMXXXXX----------XXXXXXXXXXXXNVY 480
             +S+AV+LTED+  KL D   W  I + +E                            N+Y
Sbjct:   480 SSTAVYLTEDFTPKLVDFECWKIIQVRSEKNLKNICNEGAICVLPNAMEHRDMDLQGNIY 539

Query:   481 NFGVLLFEMVTGRLPYLVDNGSLEDWAADY-LSGVQPLQQFVDPTLSSFDEEQLETLGEL 539
             +FG+LL E+V+GR  Y  D G L +W  +  L     +   VDP L  F +++LE + E+
Sbjct:   540 SFGILLLEIVSGRPSYCQDRGCLVEWVREKNLGAPDVMASLVDPELKHFKQKELEAVCEV 599

Query:   540 IKSCVRADPEKR 551
                C+  D  ++
Sbjct:   600 ASQCLNLDQNEK 611

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2036636 NIK3 "NSP-interacting kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 7.2e-33, Sum P(2) = 7.2e-33
 Identities = 84/297 (28%), Positives = 141/297 (47%)

Query:   290 LKR---SELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWP-KNLE 343
             LKR    EL +A   F+  N++G    G VYKG L++G  +          KD      E
Sbjct:   286 LKRYTFKELRSATNHFNSKNILGRGGYGIVYKGHLNDGTLVAVKRL-----KDCNIAGGE 340

Query:   344 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLD 401
             VQF+ +++T+S   H+N + L GFC   +   R++V+ Y PNG++   +  +I+    LD
Sbjct:   341 VQFQTEVETISLALHRNLLRLRGFCSSNQE--RILVYPYMPNGSVASRLKDNIRGEPALD 398

Query:   402 WGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW-------N 453
             W  R +IA+G A  L ++H Q +P I H  + ++ + L ED+ A + D           +
Sbjct:   399 WSRRKKIAVGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDS 458

Query:   454 EIAMA---EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR--LPY---LVDNGSLED 505
              +  A    +                 +V+ FG+LL E++TG+  L +       G + D
Sbjct:   459 HVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRSAHQKGVMLD 518

Query:   506 WAADYLSGVQPLQQFVDPTLSS-FDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
             W    L     L+Q +D  L+  FD  +LE + ++   C + +P  RP M ++  +L
Sbjct:   519 WVKK-LHQEGKLKQLIDKDLNDKFDRVELEEIVQVALLCTQFNPSHRPKMSEVMKML 574

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2169965 BAM1 "BARELY ANY MERISTEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
 Identities = 86/291 (29%), Positives = 135/291 (46%)

Query:   295 LEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLS 354
             L++  ED  N+IG    G VYKG + NG ++          +    + +  F  +I TL 
Sbjct:   691 LDSLKED--NIIGKGGAGIVYKGVMPNG-DLVAVKRLAAMSRG--SSHDHGFNAEIQTLG 745

Query:   355 KVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMA- 413
             ++ H++ V L+GFC   E  T ++V+EY PNG+L E +H K+  HL W  R +IA+  A 
Sbjct:   746 RIRHRHIVRLLGFCSNHE--TNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIALEAAK 803

Query:   414 -YCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS---FWNEIAMAEMXXXXXXX-- 467
               C  H H  +P I H  + S+ + L  ++ A ++D     F  +   +E          
Sbjct:   804 GLCYLH-HDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYG 862

Query:   468 ------XXXXXXXXXXNVYNFGVLLFEMVTGRLPY--LVDNGSLEDWAADYL-SGVQPLQ 518
                             +VY+FGV+L E+VTGR P     D   +  W      S    + 
Sbjct:   863 YIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKDSVL 922

Query:   519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP 569
             + +DP LSS    ++  +  +   CV     +RPTMR++  IL EI  + P
Sbjct:   923 KVLDPRLSSIPIHEVTHVFYVAMLCVEEQAVERPTMREVVQILTEIPKLPP 973

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2165981 BIR1 "AT5G48380" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 9.3e-32, Sum P(3) = 9.3e-32
 Identities = 76/245 (31%), Positives = 118/245 (48%)

Query:   271 WATGLSGQLQ-KAFV--TGVPKLKRSELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEI 325
             WA  L GQ   K F+    V K+K S+L  A E+F   N+I +   GT+YKG L +G   
Sbjct:   269 WAKSLKGQKGVKVFMFKKSVSKMKLSDLMKATEEFKKDNIIATGRTGTMYKGRLEDG--- 325

Query:   326 XXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPN 385
                       +D  ++ E +F  ++ TL  V ++N V L+G+C   +   R++++EY  N
Sbjct:   326 --SLLMIKRLQDSQRS-EKEFDAEMKTLGSVKNRNLVPLLGYCVANKE--RLLMYEYMAN 380

Query:   386 GTLFEHIHIKESEH---LDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTED 441
             G L++ +H  + E    LDW  RL+IA+G A  L  +H   NP I H  ++S  + LT +
Sbjct:   381 GYLYDQLHPADEESFKPLDWPSRLKIAIGTAKGLAWLHHSCNPRIIHRNISSKCILLTAE 440

Query:   442 YAAKLSDLSF---WNEI----------AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFE 488
             +  K+SD       N I             +                  +VY+FGV+L E
Sbjct:   441 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDFGYVAPEYSRTMVATPKGDVYSFGVVLLE 500

Query:   489 MVTGR 493
             +VTG+
Sbjct:   501 LVTGQ 505

GO:0004672 "protein kinase activity" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016301 "kinase activity" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=RCA;IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2051404 SRF1 "STRUBBELIG-receptor family 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
 Identities = 85/302 (28%), Positives = 144/302 (47%)

Query:   284 VTGVPKLKRSELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKN 341
             +T V     + L+     FS  N+IG+  +G+VY+  L  G             K  P +
Sbjct:   460 LTAVKHFTVASLQQHTNSFSHENLIGTGMLGSVYRAELPGG----KLFAVRKLDKKSPNH 515

Query:   342 LEV-QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SE 398
              E  +F + ++ + ++ H N V L+GFC E     R+++ EY  NGTL + +HI +    
Sbjct:   516 EEEGKFLELVNNIDRIRHANIVQLVGFCSEHSQ--RLLIHEYCRNGTLHDLLHIDDRLKI 573

Query:   399 HLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-- 455
              L W +R+RIA+  A  LE++H++ +PP  H    S+ + L +D    +SD      I  
Sbjct:   574 ELSWNVRVRIALEAAKALEYLHEICDPPSIHRNFKSANILLDDDIRVHVSDCGLAPLISS 633

Query:   456 -AMAEMXXXXXXXXXXXX-------XXXXXNVYNFGVLLFEMVTGRLPY--LVDNGS--L 503
              A++++                        +VY+FGV++ E++TGR  Y    D G   L
Sbjct:   634 GAVSQLSGQLLAAYGYGAPEFEYGIYTMKCDVYSFGVVMLELLTGRKSYDKKRDRGEQFL 693

Query:   504 EDWAADYLSGVQPLQQFVDPTLSS-FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 562
               WA   L  +  L + VDP+L   +  + L    ++I  CV+++PE RP M ++   L 
Sbjct:   694 VRWAIPQLHDIDALAKMVDPSLKGDYPAKSLSHFADVISRCVQSEPEYRPLMSEVVQDLS 753

Query:   563 EI 564
             ++
Sbjct:   754 DM 755

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
C0LGQ4	MRH1_ARATH	2, ., 7, ., 1, 1, ., 1	0.4132	0.9476	0.8274	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024049001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (898 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	592
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	3e-28
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	2e-26
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	7e-26
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	5e-25
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	5e-24
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-20
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	7e-20
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	1e-16
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	3e-16
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	3e-16
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-15
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	9e-15
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-14
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-14
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	4e-14
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	5e-14
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	3e-13
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-13
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	3e-13
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	7e-13
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	1e-12
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-12
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	2e-12
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	4e-12
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	5e-12
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	8e-12
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	1e-11
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	1e-11
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-11
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-11
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	6e-11
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	7e-11
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	8e-11
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	8e-11
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	9e-11
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	1e-10
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	3e-10
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	3e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-10
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	5e-10
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	5e-10
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	7e-10
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	1e-09
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	2e-09
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	4e-09
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	4e-09
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	4e-09
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	6e-09
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	8e-09
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	1e-08
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	1e-08
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	2e-08
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-08
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	2e-08
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	2e-08
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	2e-08
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-08
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	5e-08
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	6e-08
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	7e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-08
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	9e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	1e-07
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	2e-07
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	2e-07
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	2e-07
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	2e-06
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	2e-06
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	3e-06
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	4e-06
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	7e-06
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	7e-06
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	2e-05
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	3e-05
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	3e-05
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	3e-05
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	3e-05
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	4e-05
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	4e-05
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	4e-05
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	6e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-05
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	7e-05
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	7e-05
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	8e-05
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	8e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	1e-04
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-04
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	2e-04
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	2e-04
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-04
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	2e-04
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	3e-04
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-04
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	9e-04
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	0.001
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	0.001
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	0.002
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.002
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	0.002
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	0.002
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	0.003
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.003
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	0.003
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	0.003
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004
pfam04652	315	pfam04652, DUF605, Vta1 like	0.004
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	0.004
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	0.004

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score =  113 bits (285), Expect = 3e-28
 Identities = 81/284 (28%), Positives = 114/284 (40%), Gaps = 47/284 (16%)

Query: 304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEV-QFRKKIDTLSKVNHKNFV 362
             +G    G VYKG L          V+V + K+     E   F K+   + K+ H N V
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTE-VAVKTLKEDASEEERKDFLKEARVMKKLGHPNVV 59

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK-------ESEHLDWGMRLR----IAMG 411
            L+G C EEEP    +V EY   G L +++          E   L     L     IA G
Sbjct: 60  RLLGVCTEEEPL--YLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKG 117

Query: 412 MAYCLEHMHQLNPPIA-HNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLS 468
           M Y L     ++  +A  N L      + ED   K+SD  LS            T  KL 
Sbjct: 118 MEY-LASKKFVHRDLAARNCL------VGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLP 170

Query: 469 ---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQ 518
               AP +      + +S+V++FGVLL+E+ T G  PY     S E+       G +  +
Sbjct: 171 IRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPY--PGLSNEEVLEYLRKGYRLPK 228

Query: 519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 562
               P          + L EL+ SC + DPE RPT  ++   L 
Sbjct: 229 ----PEYCP------DELYELMLSCWQLDPEDRPTFSELVERLE 262

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score =  107 bits (271), Expect = 2e-26
 Identities = 82/283 (28%), Positives = 118/283 (41%), Gaps = 50/283 (17%)

Query: 302 FSNVIGSSPIGTVYKGTL---SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH 358
               +G    G VYKGTL     G E  VA V         +  E +F ++   + K++H
Sbjct: 3   LGKKLGEGAFGEVYKGTLKGDGEGTETKVA-VKTLKEGASEEERE-EFLEEASIMKKLSH 60

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR----IAMGMAY 414
            N V L+G C + EP    +V EY P G L + +  K  E L     L+    IA GM Y
Sbjct: 61  PNIVRLLGVCTQGEPL--YIVTEYMPGGDLLDFLR-KHGEKLTLKDLLQMALQIAKGMEY 117

Query: 415 CLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLSS--- 469
            LE  +       H  L +    +TE+   K+SD  LS      + E     K+      
Sbjct: 118 -LESKN-----FVHRDLAARNCLVTENLVVKISDFGLS----RDIYEDDYYRKRGGGKLP 167

Query: 470 ----APSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQ 518
               AP +      + +S+V++FGVLL+E+ T G  PY     S E+   + L     L 
Sbjct: 168 IKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPY--PGMSNEE-VLELLEDGYRLP 224

Query: 519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
           +   P          + L EL+  C   DPE RPT  ++   L
Sbjct: 225 R---PENCP------DELYELMLQCWAYDPEDRPTFSELVEDL 258

Length = 258

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  105 bits (264), Expect = 7e-26
 Identities = 57/264 (21%), Positives = 99/264 (37%), Gaps = 65/264 (24%)

Query: 306 IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 364
           +G    GTVY       G ++A+  +     K+   +L  +  ++I+ L K+NH N V L
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIK----KEDSSSLLEELLREIEILKKLNHPNIVKL 56

Query: 365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP 424
            G  E+E      +V EY   G+L + +  +    L     LRI + +   LE++H    
Sbjct: 57  YGVFEDENHL--YLVMEYCEGGSLKDLLK-ENEGKLSEDEILRILLQILEGLEYLHSNG- 112

Query: 425 PIAHNYLNSSAVHLTEDYA-AKLSDLSFWNEIAMAEMAATSKK----------LSSAPSA 473
            I H  L    + L  D    KL+D      +   +    +            L      
Sbjct: 113 -IIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYY 171

Query: 474 SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL 533
           S +S++++ GV+L+E+                                            
Sbjct: 172 SEKSDIWSLGVILYEL-------------------------------------------- 187

Query: 534 ETLGELIKSCVRADPEKRPTMRDI 557
             L +LI+  ++ DPEKRP+ ++I
Sbjct: 188 PELKDLIRKMLQKDPEKRPSAKEI 211

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score =  104 bits (261), Expect = 5e-25
 Identities = 78/286 (27%), Positives = 115/286 (40%), Gaps = 56/286 (19%)

Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKN 360
               +G    G VYKGTL    +     V+V + K+     +++ F ++   + K++H N
Sbjct: 3   LGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPN 62

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR----IAMGMAYCL 416
            V L+G C EEEP   M+V EY P G L +++     + L     L     IA GM Y L
Sbjct: 63  IVKLLGVCTEEEPL--MIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEY-L 119

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LS------------------FWNEIA 456
           E          H  L +    + E+   K+SD  LS                   W    
Sbjct: 120 ESK-----NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIRW---- 170

Query: 457 MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
           MA  +    K +S       S+V++FGVLL+E+ T G  PY     S  +       G +
Sbjct: 171 MAPESLKEGKFTSK------SDVWSFGVLLWEIFTLGEEPY--PGMSNAEVLEYLKKGYR 222

Query: 516 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
             +    P            L +L+  C   DPE RPT  ++  IL
Sbjct: 223 LPKPPNCP----------PELYKLMLQCWAEDPEDRPTFSELVEIL 258

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score =  101 bits (253), Expect = 5e-24
 Identities = 78/286 (27%), Positives = 113/286 (39%), Gaps = 57/286 (19%)

Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKN 360
               +G    G VYKG L          V+V + K+     +++ F ++   + K++H N
Sbjct: 3   LGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPN 62

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR----IAMGMAYCL 416
            V L+G C EEEP    +V EY   G L  ++  K    L     L     IA GM Y L
Sbjct: 63  VVKLLGVCTEEEPL--YIVMEYMEGGDLLSYLR-KNRPKLSLSDLLSFALQIARGMEY-L 118

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LS------------------FWNEIA 456
           E  +       H  L +    + E+   K+SD  LS                   W    
Sbjct: 119 ESKN-----FIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIRW---- 169

Query: 457 MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
           MA  +    K +S       S+V++FGVLL+E+ T G  PY     S E+      +G +
Sbjct: 170 MAPESLKEGKFTSK------SDVWSFGVLLWEIFTLGEQPY--PGMSNEEVLEYLKNGYR 221

Query: 516 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
             Q    P            L +L+  C   DPE RPT  ++  IL
Sbjct: 222 LPQPPNCP----------PELYDLMLQCWAEDPEDRPTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 70/274 (25%), Positives = 116/274 (42%), Gaps = 46/274 (16%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
            +GS   GTVYK      G  +AV  +   S K      +   R++I  L +++H N V 
Sbjct: 6   KLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSK---KDQTARREIRILRRLSHPNIVR 62

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 423
           LI   E+++     +V EY   G LF+++       L      +IA+ +   LE++H   
Sbjct: 63  LIDAFEDKD--HLYLVMEYCEGGDLFDYLS--RGGPLSEDEAKKIALQILRGLEYLHSNG 118

Query: 424 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK----------------L 467
             I H  L    + L E+   K++D         A+    S                  L
Sbjct: 119 --IIHRDLKPENILLDENGVVKIADFGL------AKKLLKSSSSLTTFVGTPWYMAPEVL 170

Query: 468 SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 527
                   + +V++ GV+L+E++TG+ P+            + L  +Q +++ + P L  
Sbjct: 171 LGGNGYGPKVDVWSLGVILYELLTGKPPF---------SGENILDQLQLIRRILGPPL-E 220

Query: 528 FDEEQL----ETLGELIKSCVRADPEKRPTMRDI 557
           FDE +     E   +LIK C+  DP KRPT  +I
Sbjct: 221 FDEPKWSSGSEEAKDLIKKCLNKDPSKRPTAEEI 254

Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 89.1 bits (222), Expect = 7e-20
 Identities = 60/277 (21%), Positives = 99/277 (35%), Gaps = 56/277 (20%)

Query: 304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
             +G    G VY       G  +A+  +     K   +    +  ++I  L K+ H N V
Sbjct: 5   EKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRE----RILREIKILKKLKHPNIV 60

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 422
            L    E+E+     +V EY   G LF+ +  K+   L           +   LE++H  
Sbjct: 61  RLYDVFEDEDKLY--LVMEYCEGGDLFDLL--KKRGRLSEDEARFYLRQILSALEYLHSK 116

Query: 423 NPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS------- 469
              I H      N L      L ED   KL+D         A      +KL++       
Sbjct: 117 G--IVHRDLKPENIL------LDEDGHVKLADFGL------ARQLDPGEKLTTFVGTPEY 162

Query: 470 -AP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
            AP            ++++ GV+L+E++TG+ P+    G  +             ++   
Sbjct: 163 MAPEVLLGKGYGKAVDIWSLGVILYELLTGKPPF---PGDDQLLEL--------FKKIGK 211

Query: 523 PTLSSFDEEQL--ETLGELIKSCVRADPEKRPTMRDI 557
           P       E        +LI+  +  DPEKR T  + 
Sbjct: 212 PKPPFPPPEWDISPEAKDLIRKLLVKDPEKRLTAEEA 248

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 72/288 (25%), Positives = 117/288 (40%), Gaps = 64/288 (22%)

Query: 306 IGSSPIGTVYKGT--LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
           +G    G+V KG   + +G E+ VA V     +      + +F ++   +++++H   V 
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVA-VKTLKQEHIA-AGKKEFLREASVMAQLDHPCIVR 60

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYCLEHM 419
           LIG C + EP   M+V E AP G L +++     I  S+  +     ++AMGMAY LE  
Sbjct: 61  LIGVC-KGEPL--MLVMELAPLGPLLKYLKKRREIPVSDLKELA--HQVAMGMAY-LESK 114

Query: 420 HQLNPPIAHNYLNSSAVHLTEDYAAKLSD------LSFWNEIAMAEMAATSKKLSSAPSA 473
           H       H  L +  V L   + AK+SD      L   ++   A  A        AP  
Sbjct: 115 H-----FVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPEC 169

Query: 474 ------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 526
                 S +S+V+++GV L+E  + G  PY              + G + +         
Sbjct: 170 INYGKFSSKSDVWSYGVTLWEAFSYGAKPY------------GEMKGAEVIAML------ 211

Query: 527 SFDEEQLETLG----------ELIKSCVRADPEKRPTMRDIAAILREI 564
               E  E L            ++ SC +  PE RPT  ++ +  R  
Sbjct: 212 ----ESGERLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRD 255

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 74/273 (27%), Positives = 120/273 (43%), Gaps = 61/273 (22%)

Query: 306 IGSSPIGTVYKGTLSNGVEIAV-----ASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 360
           +G+   G V+ GT +   ++AV      ++S  +           F ++   + K+ H  
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEA-----------FLQEAQIMKKLRHDK 62

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCL 416
            V L   C EEEP    +V EY   G+L + +   E + L       M  +IA GMAY L
Sbjct: 63  LVQLYAVCSEEEPI--YIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAY-L 119

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-MAATSKKLS---SAPS 472
           E  + +     H  L +  + + E+   K++D      I   E  A    K     +AP 
Sbjct: 120 ESRNYI-----HRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPE 174

Query: 473 A------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD--- 522
           A      +++S+V++FG+LL E+VT GR+PY              ++  + L+Q V+   
Sbjct: 175 AANYGRFTIKSDVWSFGILLTEIVTYGRVPY------------PGMTNREVLEQ-VERGY 221

Query: 523 --PTLSSFDEEQLETLGELIKSCVRADPEKRPT 553
             P   +  EE    L +L+  C   DPE+RPT
Sbjct: 222 RMPRPPNCPEE----LYDLMLQCWDKDPEERPT 250

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 70/273 (25%), Positives = 109/273 (39%), Gaps = 52/273 (19%)

Query: 301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 360
                IG    G V  G            V+V   KD     +  F  +   ++ + H N
Sbjct: 9   KLGATIGKGEFGDVMLGDYRG------QKVAVKCLKDDSTAAQ-AFLAEASVMTTLRHPN 61

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAM----GMAYCL 416
            V L+G   +  P    +V EY   G+L +++  +    +    +L  A+    GM Y L
Sbjct: 62  LVQLLGVVLQGNPL--YIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEY-L 118

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS---SAPSA 473
           E  +       H  L +  V ++ED  AK+SD     E   A     S KL    +AP A
Sbjct: 119 EEKN-----FVHRDLAARNVLVSEDLVAKVSDFGLAKE---ASQGQDSGKLPVKWTAPEA 170

Query: 474 ------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 526
                 S +S+V++FG+LL+E+ + GR+PY                   PL+  V     
Sbjct: 171 LREKKFSTKSDVWSFGILLWEIYSFGRVPY----------------PRIPLKDVVPHVEK 214

Query: 527 SFDEEQLET----LGELIKSCVRADPEKRPTMR 555
            +  E  E     + +++K C   DP KRPT +
Sbjct: 215 GYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFK 247

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 76.0 bits (187), Expect = 2e-15
 Identities = 72/283 (25%), Positives = 115/283 (40%), Gaps = 58/283 (20%)

Query: 306 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IG    G VYKG L    E+AV +         P +L+ +F ++ + L + +H N V LI
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVKTCRS----TLPPDLKRKFLQEAEILKQYDHPNIVKLI 58

Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMRLRIAMGMAYCLEHMHQ 421
           G C +++P    +V E  P G+L   +  K+   L       M L  A GM Y LE  + 
Sbjct: 59  GVCVQKQPI--YIVMELVPGGSLLTFLR-KKKNRLTVKKLLQMSLDAAAGMEY-LESKNC 114

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS-----SAPSA--- 473
           +     H  L +    + E+   K+SD     E        +          +AP A   
Sbjct: 115 I-----HRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNY 169

Query: 474 ---SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV--QPLQQFVD----- 522
              + ES+V+++G+LL+E  + G  PY                G+  Q  ++ ++     
Sbjct: 170 GRYTSESDVWSYGILLWETFSLGDTPY---------------PGMSNQQTRERIESGYRM 214

Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT 565
           P      EE    +  L+  C   DPE RP+    + I  E+ 
Sbjct: 215 PAPQLCPEE----IYRLMLQCWAYDPENRPSF---SEIYNELQ 250

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 74.4 bits (183), Expect = 9e-15
 Identities = 74/283 (26%), Positives = 121/283 (42%), Gaps = 43/283 (15%)

Query: 305 VIGSSPIGTVY----KGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 360
            +G    G V+    KG    G E  V   ++   KD  +NL+ +FR+++D   K++HKN
Sbjct: 12  TLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD--ENLQSEFRRELDMFRKLSHKN 69

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH-------LDWGMRLRIAMGMA 413
            V L+G C E EP    M+ EY   G L + +   +S+        L    ++ +   +A
Sbjct: 70  VVRLLGLCREAEPH--YMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIA 127

Query: 414 YCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS---- 469
             ++H+   N    H  L +    ++     K+S LS   ++  +E       L      
Sbjct: 128 LGMDHLS--NARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWL 185

Query: 470 APSASLE------SNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAADYLSGVQPLQQF 520
           AP A  E      S+V++FGVL++E+ T G LP+  L D   L    A  L    P    
Sbjct: 186 APEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGKLELPVP---- 241

Query: 521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
                    E     L +L+  C   +P+ RP+  ++ + L E
Sbjct: 242 ---------EGCPSRLYKLMTRCWAVNPKDRPSFSELVSALGE 275

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 75.9 bits (185), Expect = 1e-14
 Identities = 62/307 (20%), Positives = 104/307 (33%), Gaps = 34/307 (11%)

Query: 305 VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-KNFVN 363
            +G    G VY           VA   +A   +       +F ++I  L+ +NH  N V 
Sbjct: 7   KLGEGSFGEVYLARD----RKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVK 62

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH-LDWGMRLRIAMGMAYCLEHMHQL 422
           L  F ++E      +V EY   G+L + +     +  L     L I   +   LE++H  
Sbjct: 63  LYDFFQDEGSL--YLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK 120

Query: 423 NPPIAHNYLNSSAVHLTEDY-AAKLSDL-----------SFWNEIAMAEMAATS------ 464
              I H  +    + L  D    KL D            +       +    T       
Sbjct: 121 G--IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPE 178

Query: 465 -KKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP 523
                S   AS  S++++ G+ L+E++TG  P+  +  S        +    P      P
Sbjct: 179 VLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASP 238

Query: 524 TLSSFDEEQLETLGELIKSCVRADPEKRPTM-----RDIAAILREITGITPDGAIPKLSP 578
              S  E   +   +L+K  +  DP+ R +       D+ A L+       D   P  S 
Sbjct: 239 LSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLKLKESDLSDLLKPDDSA 298

Query: 579 LWWAEIE 585
                + 
Sbjct: 299 PLRLSLP 305

Length = 384

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 56/265 (21%), Positives = 100/265 (37%), Gaps = 35/265 (13%)

Query: 304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
            ++G    G+VY       G  +AV SV ++   D  + LE    ++I  LS + H N V
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKSVELS--GDSEEELE-ALEREIRILSSLQHPNIV 62

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH--IKESEHLDWGMRLRIAMGMAYCLEHMH 420
              G   +EE  T  +  EY   G+L   +    K  E +   +R      +   L ++H
Sbjct: 63  RYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPV---IRKYTRQ-ILEGLAYLH 118

Query: 421 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS-----AP---- 471
                I H  +  + + +  D   KL+D      +   E    +  +       AP    
Sbjct: 119 SNG--IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIR 176

Query: 472 --SASLESNVYNFGVLLFEMVTGRLPY-LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 528
                  +++++ G  + EM TG+ P+  + N     +          + + +      F
Sbjct: 177 GEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDF 236

Query: 529 DEEQLETLGELIKSCVRADPEKRPT 553
                      ++ C+R DP+KRPT
Sbjct: 237 -----------LRKCLRRDPKKRPT 250

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 72.1 bits (178), Expect = 4e-14
 Identities = 66/288 (22%), Positives = 108/288 (37%), Gaps = 75/288 (26%)

Query: 304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKK----IDTLSKVNH 358
             IG    G VY     S+G    +  + +        N+  + R+     +  L K+NH
Sbjct: 6   KQIGKGSFGKVYLVRRKSDGKLYVLKEIDL-------SNMSEKEREDALNEVKILKKLNH 58

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--------HIKESEHLDWGMRLRIAM 410
            N +      EE+      +V EYA  G L + I           E + LDW   +++ +
Sbjct: 59  PNIIKYYESFEEKGKL--CIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDW--FVQLCL 114

Query: 411 GMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS- 469
                L+++H     I H  +    + LT +   KL D               SK LSS 
Sbjct: 115 A----LKYLHSRK--ILHRDIKPQNIFLTSNGLVKLGDFGI------------SKVLSST 156

Query: 470 APSAS-------------LESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAAD 509
              A               ++  YN+       G +L+E+ T + P+  +  +L + A  
Sbjct: 157 VDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPF--EGENLLELALK 214

Query: 510 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
            L G  P      P  S +  E    L  L+ S ++ DPE+RP++  I
Sbjct: 215 ILKGQYP------PIPSQYSSE----LRNLVSSLLQKDPEERPSIAQI 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 72.1 bits (177), Expect = 5e-14
 Identities = 66/264 (25%), Positives = 116/264 (43%), Gaps = 39/264 (14%)

Query: 306 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           +GS   G V++G   N V +A+  +            +  F+K++  L ++ HK+ ++L 
Sbjct: 14  LGSGYFGEVWEGLWKNRVRVAIKILKSDDLL----KQQ-DFQKEVQALKRLRHKHLISLF 68

Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMRLRIAMGMAYCLEHMHQ 421
             C   EP    ++ E    G+L   +   E + L       M  ++A GMAY LE  + 
Sbjct: 69  AVCSVGEPV--YIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAY-LEEQN- 124

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS---SAPSA----- 473
                 H  L +  + + ED   K++D      I      ++ KK+    +AP A     
Sbjct: 125 ----SIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGT 180

Query: 474 -SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
            S +S+V++FG+LL+EM T G++PY    G       D     Q    +  P  +   +E
Sbjct: 181 FSTKSDVWSFGILLYEMFTYGQVPY---PGMNNHEVYD-----QITAGYRMPCPAKCPQE 232

Query: 532 QLETLGELIKSCVRADPEKRPTMR 555
               + +++  C  A+PE RP+ +
Sbjct: 233 ----IYKIMLECWAAEPEDRPSFK 252

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 70.0 bits (171), Expect = 3e-13
 Identities = 67/279 (24%), Positives = 125/279 (44%), Gaps = 45/279 (16%)

Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 361
               IGS   G V+ G      ++A+ ++   +        E  F ++   + K++H   
Sbjct: 8   LVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMS------EEDFIEEAQVMMKLSHPKL 61

Query: 362 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE---SEHLDWGMRLRIAMGMAYCLEH 418
           V L G C E  P    +VFE+  +G L +++  +    S+    GM L +  GMAY LE 
Sbjct: 62  VQLYGVCTERSPIC--LVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAY-LES 118

Query: 419 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM--AATSKKLS---SAPSA 473
            +     + H  L +    + E+   K+SD        + +   ++T  K     S+P  
Sbjct: 119 SN-----VIHRDLAARNCLVGENQVVKVSDFGM-TRFVLDDQYTSSTGTKFPVKWSSPEV 172

Query: 474 ------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 526
                 S +S+V++FGVL++E+ + G+ PY  +N S  +      +G +  +    P L+
Sbjct: 173 FSFSKYSSKSDVWSFGVLMWEVFSEGKTPY--ENRSNSEVVETINAGFRLYK----PRLA 226

Query: 527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT 565
           S      +++ EL++ C +  PE RP+    + +L ++ 
Sbjct: 227 S------QSVYELMQHCWKERPEDRPSF---SLLLHQLA 256

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 69.8 bits (171), Expect = 3e-13
 Identities = 73/270 (27%), Positives = 115/270 (42%), Gaps = 55/270 (20%)

Query: 306 IGSSPIGTVYKGTLSNGVEIAVASVS--VASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
           +G+   G V++G  +N   +AV ++       KD+    E Q  KK+       H   + 
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLA--EAQIMKKL------RHPKLIQ 65

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHM 419
           L   C  EEP    +V E    G+L E++       L       M  ++A GMAY LE  
Sbjct: 66  LYAVCTLEEPI--YIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAY-LEAQ 122

Query: 420 HQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA-TSKKLS---SAPSA-- 473
           + +     H  L +  V + E+   K++D      I      A    K     +AP A  
Sbjct: 123 NYI-----HRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAAL 177

Query: 474 ----SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD-----P 523
               S++S+V++FG+LL E+VT GR+PY              ++  + LQQ VD     P
Sbjct: 178 YNRFSIKSDVWSFGILLTEIVTYGRMPY------------PGMTNAEVLQQ-VDQGYRMP 224

Query: 524 TLSSFDEEQLETLGELIKSCVRADPEKRPT 553
                 +E    L +++  C + DP+ RPT
Sbjct: 225 CPPGCPKE----LYDIMLDCWKEDPDDRPT 250

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 70.2 bits (172), Expect = 3e-13
 Identities = 76/310 (24%), Positives = 125/310 (40%), Gaps = 86/310 (27%)

Query: 302 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDW--PKNLEVQFRKKIDTLSKVNH 358
           F   +G    G VYKG L+     ++  SV++ + K+   PK ++ +FR++ + +S + H
Sbjct: 9   FLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPK-VQQEFRQEAELMSDLQH 67

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG--------------- 403
            N V L+G C +E+P    M+FEY  +G L E + ++ S H D G               
Sbjct: 68  PNIVCLLGVCTKEQPTC--MLFEYLAHGDLHEFL-VRNSPHSDVGAESGDETVKSSLDCS 124

Query: 404 ----MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 459
               + ++IA GM Y   H         H  L +    + E    K+SD     +I  A+
Sbjct: 125 DFLHIAIQIAAGMEYLSSHH------FVHRDLAARNCLVGEGLTVKISDFGLSRDIYSAD 178

Query: 460 -MAATSKKLSS----APSA------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA 508
                SK L       P A      + ES++++FGV+L+E+                   
Sbjct: 179 YYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEI------------------- 219

Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGE----------------LIKSCVRADPEKRP 552
            +  G+QP   F        ++E +E +                  L+  C    P +RP
Sbjct: 220 -FSYGLQPYYGFS-------NQEVIEMIRSRQLLPCPEDCPARVYALMIECWNEIPARRP 271

Query: 553 TMRDIAAILR 562
             +DI   LR
Sbjct: 272 RFKDIHTRLR 281

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 68.9 bits (168), Expect = 7e-13
 Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 45/273 (16%)

Query: 306 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNL 364
           +G+   G V+ G  +N  ++AV ++        P  + VQ F ++ + +  + H   V L
Sbjct: 14  LGAGQFGEVWMGYYNNSTKVAVKTLK-------PGTMSVQAFLEEANLMKTLQHDKLVRL 66

Query: 365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMH 420
                +EEP    ++ EY   G+L + +   E   +          +IA GMAY +E  +
Sbjct: 67  YAVVTKEEPI--YIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAY-IERKN 123

Query: 421 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW-----NEIAMAEMAATSKKLSSAPSA-- 473
            +     H  L ++ V ++E    K++D         NE    E A    K + AP A  
Sbjct: 124 YI-----HRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWT-APEAIN 177

Query: 474 ----SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 528
               +++S+V++FG+LL+E+VT G++PY   + S      D +S +Q  + +  P + + 
Sbjct: 178 FGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNS------DVMSALQ--RGYRMPRMENC 229

Query: 529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
            +E    L +++K+C +   E+RPT   + ++L
Sbjct: 230 PDE----LYDIMKTCWKEKAEERPTFDYLQSVL 258

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 59/301 (19%), Positives = 108/301 (35%), Gaps = 69/301 (22%)

Query: 302 FSNVIGSSPIGTVYKGTLSN-----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 356
           F   +G    G V            G ++AV S++        +     F ++I+ L  +
Sbjct: 8   FIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNH----SGEEQHRSDFEREIEILRTL 63

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR----IAMGM 412
           +H+N V   G CE+    +  ++ EY P+G+L +++  +  + ++    L     I  GM
Sbjct: 64  DHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQ-RHRDQINLKRLLLFSSQICKGM 122

Query: 413 AYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS--- 469
            Y L           H  L +  + +  +   K+SD      +   +     K+      
Sbjct: 123 DY-LGSQR-----YIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPI 176

Query: 470 ---APSA------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF 520
              AP        S  S+V++FGV L+E+ T   P                    P  +F
Sbjct: 177 FWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQS-----------------PPAEF 219

Query: 521 VDPTLSSFDEEQLETLGELIKS--------------------CVRADPEKRPTMRDIAAI 560
           +     +  +  +  L EL+K                     C  A+P+ RP+  D+  I
Sbjct: 220 LRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILI 279

Query: 561 L 561
           +
Sbjct: 280 V 280

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 59/289 (20%), Positives = 103/289 (35%), Gaps = 81/289 (28%)

Query: 301 DFSNV--IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN 357
            F  +  IG    G VYK      G E+A+  + + S +   K +      +I  L K  
Sbjct: 1   LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKII-----NEIQILKKCK 55

Query: 358 HKNFVNLIG--FCEEEEPFTRMMVFEYAPNGTLFEHIH-----IKESEHLDWGMRLRIAM 410
           H N V   G    ++E      +V E+   G+L + +      + ES+         IA 
Sbjct: 56  HPNIVKYYGSYLKKDE----LWIVMEFCSGGSLKDLLKSTNQTLTESQ---------IA- 101

Query: 411 GMAYC------LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATS 464
               C      LE++H     I H  + ++ + LT D   KL D               S
Sbjct: 102 --YVCKELLKGLEYLHSNG--IIHRDIKAANILLTSDGEVKLIDFGL------------S 145

Query: 465 KKLSSAPSA--------------------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLE 504
            +LS   +                       ++++++ G+   E+  G+ PY  +   + 
Sbjct: 146 AQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPY-SELPPM- 203

Query: 505 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 553
              A +           +P   S      +   + +K C++ +PEKRPT
Sbjct: 204 --KALFKIATNGPPGLRNPEKWS------DEFKDFLKKCLQKNPEKRPT 244

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 67.4 bits (164), Expect = 2e-12
 Identities = 71/275 (25%), Positives = 123/275 (44%), Gaps = 46/275 (16%)

Query: 306 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           +G    G V+ GT +    +A+ ++   +    P+     F ++   + K+ H+  V L 
Sbjct: 14  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS--PE----AFLQEAQVMKKLRHEKLVQLY 67

Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQ 421
               EE  +   +V EY   G+L + +  +  ++L       M  +IA GMAY +E M+ 
Sbjct: 68  AVVSEEPIY---IVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAY-VERMNY 123

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA-TSKKLS---SAPSASL-- 475
           +     H  L ++ + + E+   K++D      I   E  A    K     +AP A+L  
Sbjct: 124 V-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 178

Query: 476 ----ESNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 528
               +S+V++FG+LL E+ T GR+PY  +V+   L+     Y     P            
Sbjct: 179 RFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPP------------ 226

Query: 529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
             E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 227 --ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 259

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 66.2 bits (161), Expect = 4e-12
 Identities = 60/264 (22%), Positives = 115/264 (43%), Gaps = 32/264 (12%)

Query: 305 VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 364
           ++G    G V+KGTL +   +AV +      +D P+ L+++F  +   L + +H N V L
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCK----EDLPQELKIKFLSEARILKQYDHPNIVKL 57

Query: 365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP 424
           IG C + +P    +V E  P G     +  K+ + L     ++ A+  A  + ++   N 
Sbjct: 58  IGVCTQRQPI--YIVMELVPGGDFLSFLR-KKKDELKTKQLVKFALDAAAGMAYLESKN- 113

Query: 425 PIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS----SAPSA------S 474
              H  L +    + E+   K+SD     +      +++  K      +AP A      S
Sbjct: 114 -CIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYS 172

Query: 475 LESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL 533
            ES+V+++G+LL+E  + G  PY              ++  Q  +Q       S  ++  
Sbjct: 173 SESDVWSYGILLWETFSLGVCPY------------PGMTNQQAREQVEKGYRMSCPQKCP 220

Query: 534 ETLGELIKSCVRADPEKRPTMRDI 557
           + + ++++ C    PE RP   ++
Sbjct: 221 DDVYKVMQRCWDYKPENRPKFSEL 244

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 66.2 bits (161), Expect = 5e-12
 Identities = 72/275 (26%), Positives = 125/275 (45%), Gaps = 46/275 (16%)

Query: 306 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           +G    G V+ GT +   ++A+ ++   +    P+     F ++   + K+ H   V L 
Sbjct: 14  LGQGCFGEVWMGTWNGTTKVAIKTLKPGTMM--PE----AFLQEAQIMKKLRHDKLVPLY 67

Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQ 421
               EE  +   +V E+   G+L + +   + ++L       M  +IA GMAY +E M+ 
Sbjct: 68  AVVSEEPIY---IVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAY-IERMNY 123

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA-TSKKLS---SAPSASL-- 475
           +     H  L ++ + + ++   K++D      I   E  A    K     +AP A+L  
Sbjct: 124 I-----HRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 178

Query: 476 ----ESNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 528
               +S+V++FG+LL E+VT GR+PY  +V+   LE     Y     P  Q         
Sbjct: 179 RFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYR---MPCPQGCP------ 229

Query: 529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
                E+L EL+K C + DP++RPT   I + L +
Sbjct: 230 -----ESLHELMKLCWKKDPDERPTFEYIQSFLED 259

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 65.4 bits (160), Expect = 8e-12
 Identities = 66/293 (22%), Positives = 119/293 (40%), Gaps = 57/293 (19%)

Query: 295 LEAACEDFSNVIGSSPIGTVYKGTLS----NGVEIAVASV-SVASAKDWPKNLEVQFRKK 349
           ++ +      VIG    G V +G L       +++A+ ++ + +S K       + F  +
Sbjct: 1   IDPSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQR-----LDFLTE 55

Query: 350 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMR 405
              + + +H N + L G   +  P   M++ EY  NG+L + +   +          GM 
Sbjct: 56  ASIMGQFDHPNIIRLEGVVTKSRPV--MIITEYMENGSLDKFLREND-GKFTVGQLVGML 112

Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK 465
             IA GM Y  E  +       H  L +  + +  +   K+SD      +  +E   T+K
Sbjct: 113 RGIASGMKYLSEMNY------VHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTK 166

Query: 466 --KLS---SAPSA------SLESNVYNFGVLLFE-MVTGRLPYLVDNGSLEDWA-ADYLS 512
             K+    +AP A      +  S+V++FG++++E M  G  PY        D +  D + 
Sbjct: 167 GGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPY-------WDMSNQDVIK 219

Query: 513 GVQP---LQQFVD-PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
            V+    L   +D P            L +L+  C + D  +RPT   I + L
Sbjct: 220 AVEDGYRLPPPMDCP----------SALYQLMLDCWQKDRNERPTFSQIVSTL 262

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 60/296 (20%), Positives = 111/296 (37%), Gaps = 42/296 (14%)

Query: 294 ELEAACEDFSNVIGSSPIGTVYKGTLSNGV-EIAVASVSVASAKDW-PKNLEVQFRKKID 351
            ++         +G    G V+ G   +   E     V+V + K+    +    F ++ +
Sbjct: 1   HVQRDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAE 60

Query: 352 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMG 411
            L+   H+N V   G C E +P   +MVFEY  +G L + +         +       MG
Sbjct: 61  LLTNFQHENIVKFYGVCTEGDPP--IMVFEYMEHGDLNKFLR-SHGPDAAFLKSPDSPMG 117

Query: 412 MAYCLEHMHQLNPPIAHN--YLNSSA-VH---------LTEDYAAKLSDLSFWNEI---- 455
               L  + Q+   IA    YL S   VH         +  D   K+ D     ++    
Sbjct: 118 -ELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTD 176

Query: 456 -------AMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 507
                   M  +     +       + ES+V++FGV+L+E+ T G+ P+           
Sbjct: 177 YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWY---------- 226

Query: 508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
              LS  + ++      L          + +++  C + DP++R  ++DI   L++
Sbjct: 227 --GLSNEEVIECITQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK 280

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 70/276 (25%), Positives = 115/276 (41%), Gaps = 37/276 (13%)

Query: 306 IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN- 363
           IG      VYK   L +G  +A+  V +    D  K  +    K+ID L +++H N +  
Sbjct: 10  IGKGQFSVVYKAICLLDGRVVALKKVQIFEMMD-AKARQ-DCLKEIDLLKQLDHPNVIKY 67

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHI-HIKESEHL-----DWGMRLRIAMGMAYCLE 417
           L  F E  E     +V E A  G L   I H K+ + L      W   +++       LE
Sbjct: 68  LASFIENNE---LNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSA----LE 120

Query: 418 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK---KLSSAPSA- 473
           HMH     I H  +  + V +T     KL DL      +    AA S        +P   
Sbjct: 121 HMHSKR--IMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERI 178

Query: 474 -----SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 528
                + +S++++ G LL+EM   + P+  D  +L           + +++   P L + 
Sbjct: 179 HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSL-------CKKIEKCDYPPLPA- 230

Query: 529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
            +   E L +L+  C+  DPEKRP +  +  + +E+
Sbjct: 231 -DHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEM 265

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 65.0 bits (158), Expect = 1e-11
 Identities = 67/293 (22%), Positives = 119/293 (40%), Gaps = 57/293 (19%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASV-SVASAKDWPKNLEVQFRK 348
           L   EL+         IG    G V  G    G ++AV  + + A+A+         F  
Sbjct: 3   LNMKELK-----LLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQ--------AFLA 48

Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI 408
           +   ++++ H N V L+G   EE+     +V EY   G+L +++  +    L     L+ 
Sbjct: 49  EASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF 107

Query: 409 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS 468
           ++ +   +E++   N    H  L +  V ++ED  AK+SD     E +  +         
Sbjct: 108 SLDVCEAMEYLEANN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKW 165

Query: 469 SAPSA------SLESNVYNFGVLLFEMVT-GRLPY----------LVDNGSLEDWAADYL 511
           +AP A      S +S+V++FG+LL+E+ + GR+PY           V+ G    +  D  
Sbjct: 166 TAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKG----YKMDAP 221

Query: 512 SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
            G  P+                  + +++K C   D   RP+   +   L  I
Sbjct: 222 DGCPPV------------------VYDVMKQCWHLDAATRPSFLQLREQLEHI 256

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 63.7 bits (155), Expect = 3e-11
 Identities = 63/275 (22%), Positives = 117/275 (42%), Gaps = 52/275 (18%)

Query: 304 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEV-QFRKKIDTLSKVNHKNF 361
           + +G    G VY+G      + +AV ++           +EV +F K+   + ++ H N 
Sbjct: 12  HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-------EDTMEVEEFLKEAAVMKEIKHPNL 64

Query: 362 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMRLRIAMGMAYCLE 417
           V L+G C  E PF   ++ E+   G L +++     + ++      M  +I+  M Y LE
Sbjct: 65  VQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEY-LE 121

Query: 418 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF----WNEIAMAEMAATSKKLSSAPSA 473
             + +     H  L +    + E++  K++D         +   A   A      +AP +
Sbjct: 122 KKNFI-----HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPES 176

Query: 474 ------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 526
                 S++S+V+ FGVLL+E+ T G  PY                G+  L Q  +    
Sbjct: 177 LAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID-LSQVYELLEK 220

Query: 527 SFDEEQLE----TLGELIKSCVRADPEKRPTMRDI 557
            +  E+ E     + EL+++C + +P  RP+  +I
Sbjct: 221 GYRMERPEGCPPKVYELMRACWQWNPSDRPSFAEI 255

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 4e-11
 Identities = 33/83 (39%), Positives = 45/83 (54%)

Query: 7   NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP 66
            L +  L G +  +I  L H++SI L  NS  G IP   G +  LEVLD  +N+F+G +P
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Query: 67  NDLGINHSLTILLLDNNDFVGSL 89
             LG   SL IL L+ N   G +
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 63.4 bits (155), Expect = 6e-11
 Identities = 64/304 (21%), Positives = 108/304 (35%), Gaps = 74/304 (24%)

Query: 301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQF---RKKI------ 350
            F  +IG     TV          E A+            K L+ +     KK+      
Sbjct: 4   KFGKIIGEGSFSTVVLAKEKETNKEYAI------------KILDKRQLIKEKKVKYVKIE 51

Query: 351 -DTLSKVN-HKNFVNLIG-FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR 407
            + L+++N H   + L   F +EE  +    V EYAPNG L ++I    S  LD      
Sbjct: 52  KEVLTRLNGHPGIIKLYYTFQDEENLY---FVLEYAPNGELLQYIRKYGS--LDEKCTRF 106

Query: 408 IAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD-----------LSFWNEIA 456
            A  +   LE++H     I H  L    + L +D   K++D               N+  
Sbjct: 107 YAAEILLALEYLHSKG--IIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGD 164

Query: 457 MAEMAATSKKLSSAPS------------------ASLESNVYNFGVLLFEMVTGRLPYLV 498
              + +  +K     +                  A   S+++  G ++++M+TG+ P+  
Sbjct: 165 ATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPF-- 222

Query: 499 DNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIA 558
             GS E     YL       Q +     SF         +LI+  +  DP+ R  + +  
Sbjct: 223 -RGSNE-----YL-----TFQKILKLEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGY 271

Query: 559 AILR 562
             L+
Sbjct: 272 DELK 275

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 63.1 bits (153), Expect = 7e-11
 Identities = 76/303 (25%), Positives = 125/303 (41%), Gaps = 56/303 (18%)

Query: 294 ELEAACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLE-VQFRKKID 351
           EL  +   F   +G    G +YKG L   G++ A   V++ + KD     +  +F+++  
Sbjct: 1   ELPLSAVRFMEELGECAFGKIYKGHLYLPGMDHA-QLVAIKTLKDINNPQQWGEFQQEAS 59

Query: 352 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG-------- 403
            +++++H N V L+G   +E+P    M+FEY   G L E + I  S H D G        
Sbjct: 60  LMAELHHPNIVCLLGVVTQEQPVC--MLFEYLNQGDLHEFL-IMRSPHSDVGCSSDEDGT 116

Query: 404 ------------MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF 451
                       + ++IA GM Y   H         H  L +  + + E    K+SDL  
Sbjct: 117 VKSSLDHGDFLHIAIQIAAGMEYLSSHF------FVHKDLAARNILIGEQLHVKISDLGL 170

Query: 452 WNEIAMAEM-AATSKKLSS----APSA------SLESNVYNFGVLLFEMVT-GRLPYLVD 499
             EI  A+      K L       P A      S +S++++FGV+L+E+ + G  PY   
Sbjct: 171 SREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYY-- 228

Query: 500 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 559
                       S  + ++      L    E+    +  L+  C +  P +RP  +DI  
Sbjct: 229 ----------GFSNQEVIEMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHT 278

Query: 560 ILR 562
            LR
Sbjct: 279 RLR 281

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 62.6 bits (152), Expect = 8e-11
 Identities = 65/284 (22%), Positives = 108/284 (38%), Gaps = 47/284 (16%)

Query: 306 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IG+   G V  G    G+  A   V    A   P   ++ F +++    ++NH N +  +
Sbjct: 3   IGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDE-QLLFLQEVQPYRELNHPNVLQCL 61

Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL----DWGMRLRIAMGMAYCLEHMHQ 421
           G C E  P+  ++V E+ P G L  ++       +       +  R+A  +A  L  +HQ
Sbjct: 62  GQCIESIPY--LLVLEFCPLGDLKNYLR-SNRGMVAQMAQKDVLQRMACEVASGLLWLHQ 118

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS-----SAPSASLE 476
            +    H+ L      LT D + K+ D     E    +   T    +      AP     
Sbjct: 119 AD--FIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEI 176

Query: 477 -------------SNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                        SN+++ GV ++E+ T    PY              LS  Q L+Q V 
Sbjct: 177 RGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPY------------PDLSDEQVLKQVVR 224

Query: 523 PTLSSFDEEQLE-TLG----ELIKSCVRADPEKRPTMRDIAAIL 561
                  + QL+        E+++ C   DPE RPT  ++  +L
Sbjct: 225 EQDIKLPKPQLDLKYSDRWYEVMQFC-WLDPETRPTAEEVHELL 267

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 62.7 bits (152), Expect = 8e-11
 Identities = 70/278 (25%), Positives = 117/278 (42%), Gaps = 37/278 (13%)

Query: 306 IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 364
           IG      VY+ T L +GV +A+  V +    D     +    K+ID L ++NH N +  
Sbjct: 10  IGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCI--KEIDLLKQLNHPNVIKY 67

Query: 365 -IGFCEEEEPFTRMMVFEYAPNGTLFEHI-HIKESEHLD-----WGMRLRIAMGMAYCLE 417
              F E+ E     +V E A  G L   I H K+ + L      W    +  + +   LE
Sbjct: 68  YASFIEDNE---LNIVLELADAGDLSRMIKHFKKQKRLIPEKTVW----KYFVQLCSALE 120

Query: 418 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS---FWNEIAMAEMAATSKKLSSAPSA- 473
           HMH     + H  +  + V +T     KL DL    F++    A  +        +P   
Sbjct: 121 HMHSRR--VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERI 178

Query: 474 -----SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 528
                + +S++++ G LL+EM   + P+  D  +L        S  + ++Q   P L S 
Sbjct: 179 HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL-------YSLCKKIEQCDYPPLPS- 230

Query: 529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG 566
            +   E L +L+  C+  DPEKRP +  +  + + +  
Sbjct: 231 -DHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRMHA 267

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 62.4 bits (152), Expect = 9e-11
 Identities = 72/287 (25%), Positives = 108/287 (37%), Gaps = 61/287 (21%)

Query: 306 IGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
           +G    G V +G    S G  I VA   + S  D   ++   F K+   +  ++H+N + 
Sbjct: 3   LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKS--DKLSDIMDDFLKEAAIMHSLDHENLIR 60

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMRLRIAMGMAYCLEHM 419
           L G          MMV E AP G+L + +      H          ++IA GM Y LE  
Sbjct: 61  LYGVVLTH---PLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRY-LESK 116

Query: 420 HQLNPPIAHNYLNSSAVHLTEDYAAKLSD---------------LSFWNEIAMAEMAATS 464
                   H  L +  + L  D   K+ D               +    ++  A  A  S
Sbjct: 117 R-----FIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPES 171

Query: 465 KKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP 523
            +  +   A   S+V+ FGV L+EM T G  P          WA   LSG Q L++ +D 
Sbjct: 172 LRTRTFSHA---SDVWMFGVTLWEMFTYGEEP----------WAG--LSGSQILKK-IDK 215

Query: 524 TLSSFDEEQLET-------LGELIKSCVRADPEKRPTMRDIAAILRE 563
                  E+LE        +  ++  C   +P  RPT   +   L E
Sbjct: 216 EG-----ERLERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLPE 257

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 46/275 (16%)

Query: 306 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           +G+   G V+ GT +   ++AV ++   +    P++    F ++   + K+ H   V L 
Sbjct: 14  LGNGQFGEVWMGTWNGNTKVAVKTLKPGTMS--PES----FLEEAQIMKKLRHDKLVQLY 67

Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQ 421
               EE  +   +V EY   G+L + +   E   L       M  ++A GMAY +E M+ 
Sbjct: 68  AVVSEEPIY---IVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAY-IERMNY 123

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA-TSKKLS---SAPSASL-- 475
           +     H  L S+ + + +    K++D      I   E  A    K     +AP A+L  
Sbjct: 124 I-----HRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 178

Query: 476 ----ESNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 528
               +S+V++FG+LL E+VT GR+PY  + +   LE     Y     P  Q    +L   
Sbjct: 179 RFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYR---MPCPQDCPISLH-- 233

Query: 529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
                    EL+  C + DPE+RPT   + + L +
Sbjct: 234 ---------ELMLQCWKKDPEERPTFEYLQSFLED 259

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 67/271 (24%), Positives = 113/271 (41%), Gaps = 43/271 (15%)

Query: 306 IGSSPIGTVYK-GTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 364
           +G    G+VYK   LS+    A+  V + S     +   V    +I  L+ VNH N   +
Sbjct: 8   LGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVN---EIRILASVNHPN---I 61

Query: 365 IGFCEEEEPFTRM-MVFEYAPNGTLFEHIHIKES------EHLDWGMRLRIAMGMAYCLE 417
           I + E      ++ +V EYAP G L + I  ++       E   W + +++  G    L+
Sbjct: 62  ISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRG----LQ 117

Query: 418 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT--SKKLSSAPSA-- 473
            +H+    I H  L S+ + L  +   K+ DL   +++    MA T        AP    
Sbjct: 118 ALHEQK--ILHRDLKSANILLVANDLVKIGDLGI-SKVLKKNMAKTQIGTPHYMAPEVWK 174

Query: 474 ----SLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPLQQFVDPTLSSF 528
               S +S++++ G LL+EM T   P+      S++D       G  P      P    +
Sbjct: 175 GRPYSYKSDIWSLGCLLYEMATFAPPF---EARSMQDLRYKVQRGKYP------PIPPIY 225

Query: 529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA 559
            ++    L   I+S ++  P+ RP    I A
Sbjct: 226 SQD----LQNFIRSMLQVKPKLRPNCDKILA 252

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 67/284 (23%), Positives = 122/284 (42%), Gaps = 39/284 (13%)

Query: 305 VIGSSPIGTVYKGTLS--NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
           ++G    G+V +G LS  +G ++ VA  ++         +E +F  +   +   +H N +
Sbjct: 6   ILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIE-EFLSEAACMKDFDHPNVM 64

Query: 363 NLIGFC----EEEEPFTRMMVFEYAPNGTLFEHIHIKE----SEHLDWGMRLRIAMGMAY 414
            LIG C      ++    M++  +  +G L   +         E L     L+  + +A 
Sbjct: 65  KLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIAL 124

Query: 415 CLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL---------SFWNEIAMAEMAATSK 465
            +E++   N    H  L +    L ED    ++D           ++ +  +A+M     
Sbjct: 125 GMEYLSNRN--FIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWI 182

Query: 466 KLSSAPSA--SLESNVYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADYLSGVQPLQQFV 521
            + S      + +S+V+ FGV ++E+ T G+ PY  V+N  +     DYL     L+Q  
Sbjct: 183 AIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEI----YDYLRHGNRLKQ-- 236

Query: 522 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT 565
                   E+ L+ L +L+ SC RADP+ RPT   +  +L  I 
Sbjct: 237 -------PEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENIL 273

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.6 bits (152), Expect = 4e-10
 Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 35/273 (12%)

Query: 304 NVIGSSPIGTVYKG-TLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
           NVI     G  YKG ++ NG++  V  ++       P +      K       + H N V
Sbjct: 696 NVISRGKKGASYKGKSIKNGMQFVVKEIN--DVNSIPSSEIADMGK-------LQHPNIV 746

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH-Q 421
            LIG C  E+     ++ EY     L E +      +L W  R +IA+G+A  L  +H +
Sbjct: 747 KLIGLCRSEK--GAYLIHEYIEGKNLSEVL-----RNLSWERRRKIAIGIAKALRFLHCR 799

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLS-------DLSFWNEIAMAEMAATSKKLSSAPSAS 474
            +P +    L+   + +       L               I+ A +A  +++        
Sbjct: 800 CSPAVVVGNLSPEKIIIDGKDEPHLRLSLPGLLCTDTKCFISSAYVAPETRETKDITE-- 857

Query: 475 LESNVYNFGVLLFEMVTGRLPYLVD---NGSLEDWAADYLSGVQPLQQFVDPTLS---SF 528
            +S++Y FG++L E++TG+ P   +   +GS+ +WA    S    L  ++DP++    S 
Sbjct: 858 -KSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCH-LDMWIDPSIRGDVSV 915

Query: 529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
           ++ ++  +  L   C   DP  RP   D+   L
Sbjct: 916 NQNEIVEVMNLALHCTATDPTARPCANDVLKTL 948

Length = 968

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 25/223 (11%)

Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI 408
           +I  LS + H N +       ++   T ++  EYA  GTL++ I  ++ +  +  M L  
Sbjct: 49  EIVILSLLQHPNIIAYYNHFMDDN--TLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWY 106

Query: 409 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW----NEIAMAEMAA-- 462
              +   + ++H+    I H  + +  + LT+    KL D        +E +MAE     
Sbjct: 107 LFQIVSAVSYIHKAG--ILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGT 164

Query: 463 ---TSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ 519
               S +L      + +S+++  G +L+E++T +  +   N                +Q 
Sbjct: 165 PYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKI--------VQG 216

Query: 520 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 562
              P +S +  E    L  L+ S ++ DPEKRPT  ++     
Sbjct: 217 NYTPVVSVYSSE----LISLVHSLLQQDPEKRPTADEVLDQPL 255

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 71/287 (24%), Positives = 125/287 (43%), Gaps = 44/287 (15%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGT---LSNGVEIAVASVSVASAKDWPKNLEVQF 346
           LK +ELE        V+GS   GTVYKG        V+I VA + V   +  PK  + + 
Sbjct: 4   LKETELE-----KIKVLGSGAFGTVYKGVWIPEGEKVKIPVA-IKVLREETSPKANK-EI 56

Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-----IKESEHLD 401
             +   ++ V+H + V L+G C         ++ +  P G L +++      I     L+
Sbjct: 57  LDEAYVMASVDHPHVVRLLGICLSS---QVQLITQLMPLGCLLDYVRNHKDNIGSQYLLN 113

Query: 402 WGMRLRIAMGMAYCLEHMHQLNPPI-AHNYL--NSSAVHLTEDYAAKLSDLSFWNEIAMA 458
           W   ++IA GM+Y LE    ++  + A N L      V +T+   AKL D+    +   A
Sbjct: 114 WC--VQIAKGMSY-LEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVD--EKEYHA 168

Query: 459 EMAATSKKLSSAPSA-----SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLS 512
           E      K  +  S      + +S+V+++GV ++E++T G  PY          A +   
Sbjct: 169 EGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIP------AVEIPD 222

Query: 513 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 559
            ++  ++   P + + D      +  ++  C   D E RPT +++  
Sbjct: 223 LLEKGERLPQPPICTID------VYMVLVKCWMIDAESRPTFKELIN 263

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 59.6 bits (144), Expect = 7e-10
 Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 44/274 (16%)

Query: 306 IGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 364
           IG    G V+ G L ++   +AV S      +  P +L+ +F ++   L + +H N V L
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCR----ETLPPDLKAKFLQEARILKQYSHPNIVRL 58

Query: 365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI----AMGMAYCLEHMH 420
           IG C +++P    +V E    G     +   E   L     +++    A GM Y LE  H
Sbjct: 59  IGVCTQKQPI--YIVMELVQGGDFLTFLR-TEGPRLKVKELIQMVENAAAGMEY-LESKH 114

Query: 421 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATS--KKLS---SAPSA-- 473
            +     H  L +    +TE    K+SD     E      A+T   K++    +AP A  
Sbjct: 115 CI-----HRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALN 169

Query: 474 ----SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 528
               S ES+V++FG+LL+E  + G +PY     +L +         Q  ++ ++  +   
Sbjct: 170 YGRYSSESDVWSFGILLWEAFSLGAVPY----ANLSN---------QQTREAIEQGVRLP 216

Query: 529 DEEQL-ETLGELIKSCVRADPEKRPTMRDIAAIL 561
             E   + +  L++ C   DP +RP+   +   L
Sbjct: 217 CPELCPDAVYRLMERCWEYDPGQRPSFSTVHQEL 250

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 45/287 (15%)

Query: 304 NVIGSSPIGTVYKGTLSN--GVEIAVASVSVASAKDWPKNLE-VQFRKKIDTLSKVNHKN 360
           N +GS   G VY+GT ++  G       V+V + +    + E  +F K+   +S  NH N
Sbjct: 1   NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPN 60

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-----------IKESEHLDWGMRLRIA 409
            V L+G C   EP   +M  E    G L  ++            +   E LD  + L +A
Sbjct: 61  IVKLLGVCLLNEPQYIIM--ELMEGGDLLSYLRDARVERFGPPLLTLKELLD--ICLDVA 116

Query: 410 MGMAYCLEHMHQLNPPIA-HNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM--AATSKK 466
            G  Y LE MH ++  +A  N L S   +   D   K+ D     +I  ++         
Sbjct: 117 KGCVY-LEQMHFIHRDLAARNCLVSEKGY-DADRVVKIGDFGLARDIYKSDYYRKEGEGL 174

Query: 467 LS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP 516
           L     AP +      + +S+V++FGVL++E++T G+ PY   N        + L  V  
Sbjct: 175 LPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN------QEVLQHVTA 228

Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
             +   P          + + +L+ +C   DP +RPT   I  IL+ 
Sbjct: 229 GGRLQKPENCP------DKIYQLMTNCWAQDPSERPTFDRIQEILQN 269

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 71/276 (25%), Positives = 115/276 (41%), Gaps = 44/276 (15%)

Query: 306 IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN- 363
           IG      VY+ T L +   +A+  V +    D     +    K+ID L ++NH N +  
Sbjct: 10  IGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCV--KEIDLLKQLNHPNVIKY 67

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHI-HIKESEHLD-----WGMRLRIAMGMAYCLE 417
           L  F E+ E     +V E A  G L + I + K+ + L      W    +  + +   +E
Sbjct: 68  LDSFIEDNE---LNIVLELADAGDLSQMIKYFKKQKRLIPERTVW----KYFVQLCSAVE 120

Query: 418 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP------ 471
           HMH     + H  +  + V +T     KL DL      +    AA S  L   P      
Sbjct: 121 HMHSRR--VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHS--LVGTPYYMSPE 176

Query: 472 -----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 526
                  + +S++++ G LL+EM   + P+  D  +L        S  Q ++Q   P L 
Sbjct: 177 RIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL-------FSLCQKIEQCDYPPLP 229

Query: 527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 562
           +  E   E L EL+  C+  DP++RP   DI  + +
Sbjct: 230 T--EHYSEKLRELVSMCIYPDPDQRP---DIGYVHQ 260

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 63/276 (22%), Positives = 107/276 (38%), Gaps = 52/276 (18%)

Query: 304 NVIGSSPIGTVYKGTLSNGVEIAVASVSV-ASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
            V+G    GTVY G  + G  IAV  V +  S     +    + ++++D L  + H N V
Sbjct: 6   EVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIV 65

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGT----------LFEHIHIKESEHLDWGMRLRIAMGM 412
             +G C ++   +  M  E+ P G+          L E +  K ++        +I  G+
Sbjct: 66  QYLGTCLDDNTISIFM--EFVPGGSISSILNRFGPLPEPVFCKYTK--------QILDGV 115

Query: 413 AYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT-SKKLSS-- 469
           AY    +H     + H  +  + V L  +   KL D      +A   +  T S  L S  
Sbjct: 116 AY----LHNNC--VVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMH 169

Query: 470 ------APSASLE------SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL 517
                 AP    E      S++++ G  +FEM TG+ P      S++  AA +  G    
Sbjct: 170 GTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPL----ASMDRLAAMFYIGAH-- 223

Query: 518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 553
                  +    +       + + SC+  D  +RP+
Sbjct: 224 ----RGLMPRLPDSFSAAAIDFVTSCLTRDQHERPS 255

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 46/276 (16%)

Query: 304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
           N IG    G V+K    ++    A+  + ++      +   +    +   L+K++    +
Sbjct: 6   NKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAI---DEARVLAKLDSSYII 62

Query: 363 NLI-GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE----SEHLDWGMRLRIAMGMAYCLE 417
                F ++ +     +V EYA NG L + + ++      E   W   ++I +G    L 
Sbjct: 63  RYYESFLDKGKLN---IVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLG----LA 115

Query: 418 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW-----NEIAMAEMAAT----SKKLS 468
           H+H  +  I H  + S  + L      K+ DL        N      +  T    S +L 
Sbjct: 116 HLH--SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELC 173

Query: 469 SAPSASLESNVYNFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGV-QPLQQFVDPTLS 526
                + +S+V+  GV+L+E  TG+ P+  +N G+L       + GV  P+ Q     L+
Sbjct: 174 EDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGAL---ILKIIRGVFPPVSQMYSQQLA 230

Query: 527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 562
                      +LI  C+  D  +RP   D   +LR
Sbjct: 231 -----------QLIDQCLTKDYRQRP---DTFQLLR 252

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 45/275 (16%)

Query: 306 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           +GS   G V+ G     +++A+  +   +        E  F ++   + K++H N V L 
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMIREGAMS------EDDFIEEAKVMMKLSHPNLVQLY 65

Query: 366 GFCEEEEPFTRMMVFEYAPNGTLF----EHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ 421
           G C ++ P    +V EY  NG L     E      +E L   M   +   M Y   +   
Sbjct: 66  GVCTKQRPI--FIVTEYMANGCLLNYLRERKGKLGTEWL-LDMCSDVCEAMEYLESNGFI 122

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-MAATSKKLS---SAPSA---- 473
                A N L      + ED   K+SD      +   +  ++   K     + P      
Sbjct: 123 HRDLAARNCL------VGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYS 176

Query: 474 --SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 530
             S +S+V++FGVL++E+ + G++PY  +  S  +      +G + L +   P L+    
Sbjct: 177 RFSSKSDVWSFGVLMWEVFSEGKMPY--ERFSNSEVVESVSAGYR-LYR---PKLAP--- 227

Query: 531 EQLETLGELIKSCVRADPEKRPTMRDIAAILREIT 565
                +  ++ SC    PE RP  +    +L ++T
Sbjct: 228 ---TEVYTIMYSCWHEKPEDRPAFK---KLLSQLT 256

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 76/285 (26%), Positives = 120/285 (42%), Gaps = 46/285 (16%)

Query: 304 NVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEV-QFRKKIDTLSKVNHKN 360
            VIG    G VY GTL  S+G +I  A  S+    D     EV QF K+   +   +H N
Sbjct: 1   RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLE---EVEQFLKEGIIMKDFSHPN 57

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMRLRIAMGMAYCL 416
            ++L+G C   E  + ++V  Y  +G L   I   E+ +       G  L++A GM Y  
Sbjct: 58  VLSLLGICLPSEG-SPLVVLPYMKHGDLRNFIR-SETHNPTVKDLIGFGLQVAKGMEYLA 115

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK---------- 466
                      H  L +    L E +  K++D     +I   E  +              
Sbjct: 116 SK------KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWM 169

Query: 467 -LSSAPSA--SLESNVYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADYLSGVQPLQQFV 521
            L S  +   + +S+V++FGVLL+E++T G  PY  VD+  +  +       +QP +   
Sbjct: 170 ALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGRRLLQP-EYCP 228

Query: 522 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG 566
           DP            L E++ SC    PE RPT  ++ + + +I  
Sbjct: 229 DP------------LYEVMLSCWHPKPEMRPTFSELVSRIEQIFS 261

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 66/276 (23%), Positives = 124/276 (44%), Gaps = 48/276 (17%)

Query: 306 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           +G+   G V+ G  +   ++A+ S+   S    P+     F  + + + ++ H   V L 
Sbjct: 14  LGAGQFGEVWMGYYNGHTKVAIKSLKQGSMS--PE----AFLAEANLMKQLQHPRLVRLY 67

Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG----MRLRIAMGMAYCLEHMHQ 421
               +E  +   ++ EY  NG+L + +   E   L       M  +IA GMA+ +E  + 
Sbjct: 68  AVVTQEPIY---IITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAF-IERKNY 123

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSF-----WNEIAMAEMAATSKKLSSAPSA--- 473
           +     H  L ++ + ++E    K++D         NE    E A    K + AP A   
Sbjct: 124 I-----HRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWT-APEAINY 177

Query: 474 ---SLESNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 527
              +++S+V++FG+LL E+VT GR+PY  + +   +++    Y    +P           
Sbjct: 178 GTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGY-RMPRP----------- 225

Query: 528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
             +   E L EL++ C +  PE+RPT   + ++L +
Sbjct: 226 --DNCPEELYELMRLCWKEKPEERPTFEYLRSVLED 259

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 73/285 (25%), Positives = 108/285 (37%), Gaps = 58/285 (20%)

Query: 309 SPIGTVYKGTLSNGVEIAVASVSVAS-AKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGF 367
                  K    N    A   V+V     D   N    F K++  LS+++  N   L+G 
Sbjct: 28  GLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGV 87

Query: 368 CEEEEPFTRMMVFEYAPNGTL--FEHIHIKESEHLDWG-----------MRLRIAMGMAY 414
           C  + P    M+ EY  NG L  F   H+ E+  L              M  +IA GM Y
Sbjct: 88  CTVDPPL--CMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRY 145

Query: 415 CLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-----------AMAE---M 460
            LE    LN    H  L +    + ++Y  K++D      +           A      M
Sbjct: 146 -LE---SLN--FVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWM 199

Query: 461 AATS---KKLSSAPSASLESNVYNFGVLLFEMVT--GRLPY--LVDNGSLEDWAADYLSG 513
           A  S    K ++       S+V+ FGV L+E++T     PY  L D   +E+  A +   
Sbjct: 200 AWESVLLGKFTTK------SDVWAFGVTLWEILTLCREQPYEHLTDQQVIEN--AGHFFR 251

Query: 514 VQPLQQFVD-PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
               Q ++  P          + + EL+  C R D E RPT R+I
Sbjct: 252 DDGRQIYLPRPPNCP------KDIYELMLECWRRDEEDRPTFREI 290

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 64/269 (23%), Positives = 121/269 (44%), Gaps = 42/269 (15%)

Query: 305 VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFVN 363
           +IG    G V +G  + G ++AV ++          ++  Q F ++   ++K++HKN V 
Sbjct: 13  IIGEGEFGAVLQGEYT-GQKVAVKNIKC--------DVTAQAFLEETAVMTKLHHKNLVR 63

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 423
           L+G       +   +V E    G L   +  +    +     L+ ++ +A  +E++   +
Sbjct: 64  LLGVILHNGLY---IVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLE--S 118

Query: 424 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-MAATSKKLS---SAPSA------ 473
             + H  L +  + ++ED  AK+SD      +A    M   + KL    +AP A      
Sbjct: 119 KKLVHRDLAARNILVSEDGVAKVSDFG----LARVGSMGVDNSKLPVKWTAPEALKHKKF 174

Query: 474 SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ 532
           S +S+V+++GVLL+E+ + GR PY     SL++       G +     ++P      E  
Sbjct: 175 SSKSDVWSYGVLLWEVFSYGRAPY--PKMSLKEVKECVEKGYR-----MEPP-----EGC 222

Query: 533 LETLGELIKSCVRADPEKRPTMRDIAAIL 561
              +  L+ SC   +P+KRP+   +   L
Sbjct: 223 PADVYVLMTSCWETEPKKRPSFHKLREKL 251

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 29/222 (13%)

Query: 349 KIDTLSKVNHKNFVNLI-GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR 407
           +   L  ++H N +     F E++     M+V EYAP GTL E+I  + +  LD    L 
Sbjct: 49  ECQVLKLLSHPNIIEYYENFLEDKA---LMIVMEYAPGGTLAEYIQKRCNSLLDEDTILH 105

Query: 408 IAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWNEIAMAEMAAT--- 463
             + +   L H+H     I H  L +  + L +     K+ D      ++    A T   
Sbjct: 106 FFVQILLALHHVHTKL--ILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVG 163

Query: 464 -----SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-PL 517
                S +L      + +S+++  G +L+E+ +  L    +  +L       +SG   P+
Sbjct: 164 TPCYISPELCEGKPYNQKSDIWALGCVLYELAS--LKRAFEAANLPALVLKIMSGTFAPI 221

Query: 518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 559
                P L            +LI S +  DP KRP +  I A
Sbjct: 222 SDRYSPDLR-----------QLILSMLNLDPSKRPQLSQIMA 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 35/167 (20%)

Query: 353 LSKVNHKNFVNLI-GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIA 409
           LS++NH   V L   F  EE+ +   +V EYAP G LF H+  +   SE      R   A
Sbjct: 47  LSRINHPFIVKLHYAFQTEEKLY---LVLEYAPGGELFSHLSKEGRFSEER---ARFYAA 100

Query: 410 -MGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS 468
            + +A  LE++H L   I +  L    + L  D   KL+D          E+++   + +
Sbjct: 101 EIVLA--LEYLHSLG--IIYRDLKPENILLDADGHIKLTDFGLA-----KELSSEGSRTN 151

Query: 469 S--------APSASLESNVYN-------FGVLLFEMVTGRLPYLVDN 500
           +        AP   L    Y         GVLL+EM+TG+ P+  ++
Sbjct: 152 TFCGTPEYLAPEV-LLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAED 197

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 74/287 (25%), Positives = 113/287 (39%), Gaps = 61/287 (21%)

Query: 305 VIGSSPIGTVYKGT--LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
            IG    G VY+G        +IAVA V        P   E +F ++   + + +H + V
Sbjct: 13  CIGEGQFGDVYQGVYMSPENEKIAVA-VKTCKNCTSPSVRE-KFLQEAYIMRQFDHPHIV 70

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM----RLRIAMGMAYCLEH 418
            LIG   E   +   +V E AP G L  ++       LD         +++  +AY LE 
Sbjct: 71  KLIGVITENPVW---IVMELAPLGELRSYLQ-VNKYSLDLASLILYSYQLSTALAY-LES 125

Query: 419 MHQLNPPIA-HNYLNSS-------------AVHLTEDYAAKLSDLSF-WNEIAMAEMAAT 463
              ++  IA  N L SS              +     Y A    L   W    MA  +  
Sbjct: 126 KRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKW----MAPESIN 181

Query: 464 SKKLSSAPSASLESNVYNFGVLLFE-MVTGRLPYL-VDN----GSLEDWAADYLSGVQPL 517
            ++ +SA      S+V+ FGV ++E ++ G  P+  V N    G +E+   + L    P+
Sbjct: 182 FRRFTSA------SDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIEN--GERL----PM 229

Query: 518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
                PTL S           L+  C   DP KRP   ++ A L +I
Sbjct: 230 PPNCPPTLYS-----------LMTKCWAYDPSKRPRFTELKAQLSDI 265

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 57/236 (24%), Positives = 103/236 (43%), Gaps = 42/236 (17%)

Query: 294 ELEAACEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPK-NLEVQFRKKID 351
           E+  +   F   +G    G VYKG L          +V++ + KD  +  L  +F+ +  
Sbjct: 1   EINLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAM 60

Query: 352 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG-------- 403
             S++ H N V L+G   +E+P +  M+F Y  +  L E + +  S H D G        
Sbjct: 61  MRSRLQHPNIVCLLGVVTKEQPLS--MIFSYCSHSDLHEFL-VMRSPHSDVGSTDDDKTV 117

Query: 404 -----------MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW 452
                      +  +IA GM +   H       + H  L +  V + +    K+SDL  +
Sbjct: 118 KSTLEPADFVHIVTQIAAGMEFLSSHH------VVHKDLATRNVLVFDKLNVKISDLGLF 171

Query: 453 NEIAMAE----MAATSKKLS-SAPSA------SLESNVYNFGVLLFEMVT-GRLPY 496
            E+  A+    M  +   +   +P A      S++S+++++GV+L+E+ + G  PY
Sbjct: 172 REVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPY 227

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 44/230 (19%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FR 347
           LK +EL         ++GS   GTV+KG  +  G  I +  V++ + +D       Q   
Sbjct: 4   LKETELRKL-----KLLGSGVFGTVHKGIWIPEGDSIKIP-VAIKTIQDRSGRQTFQEIT 57

Query: 348 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLFEHIH-----IKESEHLD 401
             +  +  ++H   V L+G C    P   + +V + +P G+L +H+      +     L+
Sbjct: 58  DHMLAMGSLDHAYIVRLLGIC----PGASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLN 113

Query: 402 WGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS----------- 450
           W   ++IA GM Y  EH       + H  L +  + L  D   +++D             
Sbjct: 114 WC--VQIAKGMYYLEEHR------MVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKK 165

Query: 451 -FWNEI--AMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPY 496
            F++E    +  MA  S         + +S+V+++GV ++EM++ G  PY
Sbjct: 166 YFYSEHKTPIKWMALESILFGRY---THQSDVWSYGVTVWEMMSYGAEPY 212

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 54/266 (20%), Positives = 116/266 (43%), Gaps = 51/266 (19%)

Query: 314 VYKGTLSNGVEIAVASVSVASAKDWPKNLEV---QFRKKIDTLSKVNHKNFVNLIGF-CE 369
           +YKG  +N        V + + K + K  +V       +I  L +++  N + + GF  +
Sbjct: 36  IYKGIFNN------KEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIID 89

Query: 370 EEEPFTRM-MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIA 427
             +   R+ ++ EY   G L E +  ++   L +  +L +A+     L ++++  N P  
Sbjct: 90  IVDDLPRLSLILEYCTRGYLREVLDKEKD--LSFKTKLDMAIDCCKGLYNLYKYTNKP-- 145

Query: 428 HNYLNSSAVHLTEDYAAK---------LSDLSFWNEIAMAEMAATSKKLSSA--PSASLE 476
           +  L S +  +TE+Y  K         LS   F   +    M   S K+ +      +++
Sbjct: 146 YKNLTSVSFLVTENYKLKIICHGLEKILSSPPF-KNVNF--MVYFSYKMLNDIFSEYTIK 202

Query: 477 SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET- 535
            ++Y+ GV+L+E+ TG++P+  +N                 ++  D  ++  +  +L   
Sbjct: 203 DDIYSLGVVLWEIFTGKIPF--EN-------LTT-------KEIYDLIINKNNSLKLPLD 246

Query: 536 ----LGELIKSCVRADPEKRPTMRDI 557
               +  ++++C   D  KRP +++I
Sbjct: 247 CPLEIKCIVEACTSHDSIKRPNIKEI 272

Length = 283

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.6 bits (134), Expect = 5e-08
 Identities = 35/98 (35%), Positives = 49/98 (50%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
           L G +  E+  +  +K I L  N+ SG IP   G L  L  LD  +NN +GP+P+ LG  
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 110
            +L  L L  N   G + P I+ LQ L    + +  LS
Sbjct: 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Length = 968

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 67/290 (23%), Positives = 117/290 (40%), Gaps = 56/290 (19%)

Query: 302 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKV-NH 358
           F   +G+   G V + T        AV  V+V   K    + E +    ++  +S + NH
Sbjct: 39  FGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNH 98

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAY 414
           +N VNL+G C    P   +++ EY   G L   +  K    L          ++A GMA+
Sbjct: 99  ENIVNLLGACTIGGPI--LVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAF 156

Query: 415 -----CLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS 469
                C+           H  L +  V LT     K+ D     +I M +     K  + 
Sbjct: 157 LASKNCI-----------HRDLAARNVLLTHGKIVKICDFGLARDI-MNDSNYVVKGNAR 204

Query: 470 ------APSA------SLESNVYNFGVLLFEMVT-GRLPY---LVDNGSLEDWAADYLSG 513
                 AP +      + ES+V+++G+LL+E+ + G  PY    VD+         +   
Sbjct: 205 LPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDS--------KFYKL 256

Query: 514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
           ++   +   P  +         + +++K+C  ADP KRPT + I  ++ +
Sbjct: 257 IKEGYRMAQPEHAP------AEIYDIMKTCWDADPLKRPTFKQIVQLIGK 300

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 54.2 bits (130), Expect = 6e-08
 Identities = 73/299 (24%), Positives = 126/299 (42%), Gaps = 56/299 (18%)

Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWP-KNLEVQ 345
           P L+ ++++     F +VIG    G V K  +  +G+ +  A   +   K++  K+    
Sbjct: 2   PVLEWNDIK-----FQDVIGEGNFGQVLKARIKKDGLRMDAA---IKRMKEYASKDDHRD 53

Query: 346 FRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 404
           F  +++ L K+  H N +NL+G CE        +  EYAP+G L +   +++S  L+   
Sbjct: 54  FAGELEVLCKLGHHPNIINLLGACEHRGYL--YLAIEYAPHGNLLD--FLRKSRVLETDP 109

Query: 405 RLRIAMGMAYCLEHMHQL--------------NPPIAHNYLNSSAVHLTEDYAAKLSD-- 448
              IA   A  L     L                   H  L +  + + E+Y AK++D  
Sbjct: 110 AFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFG 169

Query: 449 LSFWNEIAMAE---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLV 498
           LS   E+ + +         MA  S   S   +    S+V+++GVLL+E+V+ G  PY  
Sbjct: 170 LSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTT---NSDVWSYGVLLWEIVSLGGTPYC- 225

Query: 499 DNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
                       L    P    ++  L+  DE     + +L++ C R  P +RP+   I
Sbjct: 226 ------GMTCAELYEKLPQGYRLEKPLNCDDE-----VYDLMRQCWREKPYERPSFAQI 273

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 67/262 (25%), Positives = 106/262 (40%), Gaps = 35/262 (13%)

Query: 306 IGSSPIGTVYKG-TLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 364
           +GS   G+VY+G  L +G   AV  VS+A      +    Q  ++I  LSK+ H N V  
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQY 67

Query: 365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL---RIAMGMAYCLEHMHQ 421
           +G   EE+     +  E  P G+L   +  K     +  +RL   +I +G+ Y    +H 
Sbjct: 68  LGTEREEDNLYIFL--ELVPGGSL-AKLLKKYGSFPEPVIRLYTRQILLGLEY----LHD 120

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS---APSASLESN 478
            N    H  +  + + +  +   KL+D     ++ +    A S K S    AP    +  
Sbjct: 121 RN--TVHRDIKGANILVDTNGVVKLADFGMAKQV-VEFSFAKSFKGSPYWMAPEVIAQQG 177

Query: 479 VYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
            Y         G  + EM TG+ P+      LE  AA +  G       +   LS     
Sbjct: 178 GYGLAADIWSLGCTVLEMATGKPPW----SQLEGVAAVFKIGRSKELPPIPDHLS----- 228

Query: 532 QLETLGELIKSCVRADPEKRPT 553
             +   + I  C++ DP  RPT
Sbjct: 229 --DEAKDFILKCLQRDPSLRPT 248

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.9 bits (132), Expect = 9e-08
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 7   NLKDLCLEGTLAPEIQSLTH-IKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 65
           NL +  L G +  +I + +  ++ + L NN+F+G IP G   +  LE LD  +N  SG +
Sbjct: 99  NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEI 156

Query: 66  PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK 125
           PND+G   SL +L L  N  VG +   +  L  L    +   QL     +E     +S+K
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLK 215

Query: 126 W 126
           W
Sbjct: 216 W 216

Length = 968

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 53.3 bits (128), Expect = 9e-08
 Identities = 65/287 (22%), Positives = 113/287 (39%), Gaps = 62/287 (21%)

Query: 305 VIGSSPIGTVYKG-TLSNGVEIAVASVSV---ASAKDWPKNLEV--QFRKKIDTLSKVNH 358
           +IG    G VY    ++ G  +AV  V +    + +   +  ++    R +I+TL  ++H
Sbjct: 8   LIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDH 67

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMRLRIAMGMAYCL 416
            N V  +GF  E       +  EY P G++   +  + +  E L      ++  G+AY  
Sbjct: 68  LNIVQYLGF--ETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAY-- 123

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS---------------------FWNEI 455
             +H     I H  L +  + +  D   K+SD                       FW   
Sbjct: 124 --LHSKG--ILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFW--- 176

Query: 456 AMA-EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV 514
            MA E+  +  +  SA     + ++++ G ++ EM  GR P+       E  AA +  G 
Sbjct: 177 -MAPEVIHSYSQGYSA-----KVDIWSLGCVVLEMFAGRRPW----SDEEAIAAMFKLGN 226

Query: 515 Q----PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
           +    P+   V   LS      L+ L      C   +P+ RPT R++
Sbjct: 227 KRSAPPIPPDVSMNLSP---VALDFLNA----CFTINPDNRPTAREL 266

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.9 bits (132), Expect = 1e-07
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 6/106 (5%)

Query: 7   NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP 66
           +L D  L G +   +  L +++ + L +N+F+G IP     L  L+VL    N FSG +P
Sbjct: 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Query: 67  NDLGINHSLTILLLDNNDFVGSL------SPEIYKLQVLSESQVDE 106
            +LG +++LT+L L  N+  G +      S  ++KL + S S   E
Sbjct: 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395

Length = 968

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 62/288 (21%), Positives = 121/288 (42%), Gaps = 52/288 (18%)

Query: 306 IGSSPIGTVYKGTLSNGV-EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 364
           +G    G V+     N + E     V+V + K+  ++    F+++ + L+ + H++ V  
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRF 72

Query: 365 IGFCEEEEPFTRMMVFEYAPNGTL--FEHIHIKESEHLDWG---------------MRLR 407
            G C E  P   +MVFEY  +G L  F   H  +++ L  G               +  +
Sbjct: 73  YGVCTEGRPL--LMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQ 130

Query: 408 IAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----AAT 463
           IA GM Y L  +H       H  L +    + +    K+ D     +I   +       T
Sbjct: 131 IASGMVY-LASLH-----FVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRT 184

Query: 464 SKKLSSAPSASL-------ESNVYNFGVLLFEMVT-GRLP-YLVDNGSLEDWAADYLSGV 514
              +   P  S+       ES++++FGV+L+E+ T G+ P Y + N      A + ++  
Sbjct: 185 MLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTE----AIECITQG 240

Query: 515 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 562
           + L++        +          +++ C + +P++R  ++DI + L+
Sbjct: 241 RELERPRTCPPEVYA---------IMQGCWQREPQQRMVIKDIHSRLQ 279

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 63/269 (23%), Positives = 112/269 (41%), Gaps = 46/269 (17%)

Query: 306 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           +G+   G V  G      ++A+  +   S        E +F ++   + K++H+  V L 
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS------EDEFIEEAKVMMKLSHEKLVQLY 65

Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHI-----HIKESEHLDWGMRLRIAMGMAYCLEHMH 420
           G C ++ P    +V EY  NG L  ++       + S+ L+  M   +  GMAY LE   
Sbjct: 66  GVCTKQRPI--YIVTEYMSNGCLLNYLREHGKRFQPSQLLE--MCKDVCEGMAY-LES-K 119

Query: 421 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-MAATSKKLS---SAPSA--- 473
           Q      H  L +    + +    K+SD      +   E  ++   K     S P     
Sbjct: 120 QF----IHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLY 175

Query: 474 ---SLESNVYNFGVLLFEMVT-GRLPY-LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 528
              S +S+V+ FGVL++E+ + G++PY   +N    +  +  L       +   P L+S 
Sbjct: 176 SKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGL-------RLYRPHLAS- 227

Query: 529 DEEQLETLGELIKSCVRADPEKRPTMRDI 557
                E +  ++ SC     E+RPT + +
Sbjct: 228 -----EKVYAIMYSCWHEKAEERPTFQQL 251

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 30/89 (33%), Positives = 43/89 (48%)

Query: 3   VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           +M   L +  L G +  E+ S   + S+ L +N  SG IP  F E+  L  LD   N  S
Sbjct: 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560

Query: 63  GPLPNDLGINHSLTILLLDNNDFVGSLSP 91
           G +P +LG   SL  + + +N   GSL  
Sbjct: 561 GEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 73/296 (24%), Positives = 125/296 (42%), Gaps = 62/296 (20%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTL---SNGVEIAVASVSVASAKDWPKNLEVQF 346
           LK +EL+        V+GS   GTVYKG        V+I VA + + +    PK   V+F
Sbjct: 4   LKETELKRV-----KVLGSGAFGTVYKGIWVPEGETVKIPVA-IKILNETTGPK-ANVEF 56

Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-----IKESEHLD 401
             +   ++ ++H + V L+G C      T  +V +  P+G L +++H     I     L+
Sbjct: 57  MDEALIMASMDHPHLVRLLGVCLSP---TIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLN 113

Query: 402 WGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA 461
           W   ++IA GM Y  E         A N L  S  H+      K++D        +A + 
Sbjct: 114 WC--VQIAKGMMYLEERRLVHRDLAARNVLVKSPNHV------KITDF------GLARLL 159

Query: 462 ATSKKLSSAPSASL-----------------ESNVYNFGVLLFEMVT-GRLPYLVDNGSL 503
              +K  +A    +                 +S+V+++GV ++E++T G  PY   +G  
Sbjct: 160 EGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPY---DGIP 216

Query: 504 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 559
                D L   + L Q   P + + D      +  ++  C   D + RP  +++AA
Sbjct: 217 TREIPDLLEKGERLPQ---PPICTID------VYMVMVKCWMIDADSRPKFKELAA 263

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 28/214 (13%)

Query: 306 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           +GS   GTV KG           +V +    +    L+ +  ++ + + ++++   V +I
Sbjct: 3   LGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMI 62

Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYCLEHMHQ 421
           G CE E   + M+V E A  G L + +    H+ E    +  +  +++MGM Y  E    
Sbjct: 63  GICEAE---SWMLVMELAELGPLNKFLQKNKHVTEKNITE--LVHQVSMGMKYLEET--- 114

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---MAATSKKLS---SAPSA-- 473
                 H  L +  V L   + AK+SD      +   E    A T  K      AP    
Sbjct: 115 ---NFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMN 171

Query: 474 ----SLESNVYNFGVLLFEMVT-GRLPYLVDNGS 502
               S +S+V++FGVL++E  + G+ PY    G+
Sbjct: 172 YYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGN 205

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 57/258 (22%), Positives = 104/258 (40%), Gaps = 35/258 (13%)

Query: 330 VSVASAK-DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL 388
           V+V + K +  +     ++K+I+ L  + H+N V   G C E+      ++ EY P G+L
Sbjct: 36  VAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSL 95

Query: 389 FEHIHIKESEHLDWGMRL--RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL 446
            +++  K   +L   +    +I  GMAY L   H +     H  L +  V L  D   K+
Sbjct: 96  RDYLP-KHKLNLAQLLLFAQQICEGMAY-LHSQHYI-----HRDLAARNVLLDNDRLVKI 148

Query: 447 SDLSFWNEIAMAEMAATSKKLSSAP------------SASLESNVYNFGVLLFEMVTGRL 494
            D      +         ++   +P              S  S+V++FGV L+E++T   
Sbjct: 149 GDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCD 208

Query: 495 PYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL--------ETLGELIKSCVRA 546
                    E+     + G +  Q  V   +   +            + +  L+K+C   
Sbjct: 209 SKQSPPKKFEE-----MIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWET 263

Query: 547 DPEKRPTMRDIAAILREI 564
           + + RPT R +  IL+E+
Sbjct: 264 EAKFRPTFRSLIPILKEM 281

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 64/289 (22%), Positives = 109/289 (37%), Gaps = 60/289 (20%)

Query: 306 IGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
           +G    G VY+G             +A+ +V+  ++    + +E  F  +   + + N  
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMR--ERIE--FLNEASVMKEFNCH 69

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWG----------MRLR 407
           + V L+G     +P   ++V E    G L  ++     E+E+              M   
Sbjct: 70  HVVRLLGVVSTGQP--TLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAE 127

Query: 408 IAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-------- 459
           IA GMAY L           H  L +    + ED   K+ D     +I   +        
Sbjct: 128 IADGMAY-LAAKK-----FVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKG 181

Query: 460 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLS 512
                 MA  S  L      + +S+V++FGV+L+EM T    PY    G   +    ++ 
Sbjct: 182 LLPVRWMAPES--LKDGVFTT-KSDVWSFGVVLWEMATLAEQPYQ---GLSNEEVLKFVI 235

Query: 513 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
               L     P      E   + L EL++ C + +P+ RPT  +I + L
Sbjct: 236 DGGHLDL---P------ENCPDKLLELMRMCWQYNPKMRPTFLEIVSSL 275

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 1e-06
 Identities = 28/92 (30%), Positives = 44/92 (47%)

Query: 19  PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTIL 78
           P+      ++++ L  N FSG +P   G L EL  L    N  SG +P++L     L  L
Sbjct: 469 PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528

Query: 79  LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 110
            L +N   G +     ++ VLS+  + + QLS
Sbjct: 529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560

Length = 968

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 66/310 (21%), Positives = 120/310 (38%), Gaps = 76/310 (24%)

Query: 305 VIGSSPIGTVYKGTLSNGVEIA----VASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHK 359
            +G    G V K T      +       +V+V   K+   + E++    + + L +VNH 
Sbjct: 7   TLGEGEFGKVVKAT---AFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHP 63

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK----------------------ES 397
           + + L G C ++ P   +++ EYA  G+L   +                         + 
Sbjct: 64  HVIKLYGACSQDGPL--LLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDE 121

Query: 398 EHLDWGMRL----RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN 453
             L  G  +    +I+ GM Y  E        + H  L +  V + E    K+SD     
Sbjct: 122 RALTMGDLISFAWQISRGMQYLAEM------KLVHRDLAARNVLVAEGRKMKISDFGLSR 175

Query: 454 EIAMAEMAATSKKLSSAPSA------------SLESNVYNFGVLLFEMVT-GRLPYLVDN 500
           ++   E +   +     P              + +S+V++FGVLL+E+VT G  PY    
Sbjct: 176 DV-YEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPY---- 230

Query: 501 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRD 556
                       G+ P ++  +   + +  E+ E   E    L+ +C + +P+KRPT  D
Sbjct: 231 -----------PGIAP-ERLFNLLKTGYRMERPENCSEEMYNLMLTCWKQEPDKRPTFAD 278

Query: 557 IAAILREITG 566
           I+  L ++  
Sbjct: 279 ISKELEKMMV 288

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 7   NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP 66
           NL    + G + P + S+T ++ + L  NSF+G IPE  G+L  L +L+   N+ SG +P
Sbjct: 448 NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Query: 67  NDLG 70
             LG
Sbjct: 508 AALG 511

Length = 623

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 62/289 (21%), Positives = 121/289 (41%), Gaps = 40/289 (13%)

Query: 294 ELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFRKKID 351
           E+  +      VIG+   G V++G L      E+AVA  ++     + +     F  +  
Sbjct: 1   EIHPSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPG--YTEKQRQDFLSEAS 58

Query: 352 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW---GMRLRI 408
            + + +H N + L G   + +P   M++ EY  NG L +++   + E   +   GM   I
Sbjct: 59  IMGQFSHHNIIRLEGVVTKFKPA--MIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGI 116

Query: 409 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF---WNEIAMAEMAATSK 465
           A GM Y L  M+ +     H  L +  + +  +   K+SD        +        +  
Sbjct: 117 AAGMKY-LSDMNYV-----HRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGG 170

Query: 466 KLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
           K+    +AP A      +  S+V++FG++++E+++ G  PY         W    +S  +
Sbjct: 171 KIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPY---------WD---MSNHE 218

Query: 516 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
            ++   D        +    + +L+  C + D  +RP   DI  +L ++
Sbjct: 219 VMKAINDGFRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL 267

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 67/291 (23%), Positives = 122/291 (41%), Gaps = 55/291 (18%)

Query: 302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWP-KNLEVQFRKKIDTLSKV-NH 358
           F +VIG    G V +  +  +G+++  A   +   K++  +N    F  +++ L K+ +H
Sbjct: 6   FEDVIGEGNFGQVIRAMIKKDGLKMNAA---IKMLKEFASENDHRDFAGELEVLCKLGHH 62

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE---------SEH-----LDWGM 404
            N +NL+G CE        +  EYAP G L + +              EH     L    
Sbjct: 63  PNIINLLGACENRGYL--YIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQ 120

Query: 405 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATS 464
            L+ A  +A  ++++ +      H  L +  V + E+ A+K++D      ++  E     
Sbjct: 121 LLQFASDVATGMQYLSE--KQFIHRDLAARNVLVGENLASKIADFG----LSRGEEVYVK 174

Query: 465 KKLSSAPSA------------SLESNVYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADY 510
           K +   P              + +S+V++FGVLL+E+V+ G  PY  +    L +     
Sbjct: 175 KTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQG 234

Query: 511 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
               +P          + D+E    + EL++ C R  P +RP    I+  L
Sbjct: 235 YRMEKP---------RNCDDE----VYELMRQCWRDRPYERPPFAQISVQL 272

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 39/227 (17%)

Query: 347 RKKIDTLSKVNHKNFVNLIGFCEE-EEPFTRMMVFEYAPNGTLFEHIH------IKESEH 399
           RK++  LS + H N V    + E  EE     +V +Y   G L++ I+        E + 
Sbjct: 47  RKEVAVLSNMKHPNIVQ---YQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQI 103

Query: 400 LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-AMA 458
           LDW +++ +A      L+H+H  +  I H  + S  + LT+D   KL D      + +  
Sbjct: 104 LDWFVQICLA------LKHVH--DRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTV 155

Query: 459 EMAAT--------SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY 510
           E+A T        S ++      + +S+++  G +L+EM T  L +  + G++++     
Sbjct: 156 ELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCT--LKHAFEAGNMKNLVLKI 213

Query: 511 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
           + G  P      P  S +  +    L  L+    + +P  RP++  I
Sbjct: 214 IRGSYP------PVSSHYSYD----LRNLVSQLFKRNPRDRPSVNSI 250

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 62/271 (22%), Positives = 116/271 (42%), Gaps = 55/271 (20%)

Query: 330 VSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL- 388
           V+V + KD   N    F ++ + L+ + H++ V   G C E +P   +MVFEY  +G L 
Sbjct: 38  VAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL--IMVFEYMKHGDLN 95

Query: 389 -FEHIH---------------IKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN 432
            F   H               + +S+ L   +  +IA GM Y L   H       H  L 
Sbjct: 96  KFLRAHGPDAVLMAEGNRPAELTQSQMLH--IAQQIAAGMVY-LASQH-----FVHRDLA 147

Query: 433 SSAVHLTEDYAAKLSDLSFWNEIAMAEM----AATSKKLSSAPSASL-------ESNVYN 481
           +    + E+   K+ D     ++   +       T   +   P  S+       ES+V++
Sbjct: 148 TRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWS 207

Query: 482 FGVLLFEMVT-GRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE 538
            GV+L+E+ T G+ P+  L +N  +E      ++  + LQ+   P          + + +
Sbjct: 208 LGVVLWEIFTYGKQPWYQLSNNEVIE-----CITQGRVLQR---PRTCP------KEVYD 253

Query: 539 LIKSCVRADPEKRPTMRDIAAILREITGITP 569
           L+  C + +P  R  +++I ++L+ +   +P
Sbjct: 254 LMLGCWQREPHMRLNIKEIHSLLQNLAKASP 284

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 48.5 bits (115), Expect = 5e-06
 Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 58/247 (23%)

Query: 358 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR------------ 405
           HKN +NL+G C ++ P    ++ EYA  G L E++  +    +++               
Sbjct: 83  HKNIINLLGACTQDGPL--YVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFK 140

Query: 406 ------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 459
                  ++A GM Y        +    H  L +  V +TED   K++D     +I   +
Sbjct: 141 DLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 194

Query: 460 M--AATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 507
                T+ +L     AP A      + +S+V++FGVLL+E+ T G  PY           
Sbjct: 195 YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY----------- 243

Query: 508 ADYLSGVQPLQQFVDPTLSSFDEEQLET----LGELIKSCVRADPEKRPTMRDIAAILRE 563
                GV P+++           ++       L  +++ C  A P +RPT + +   L  
Sbjct: 244 ----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 298

Query: 564 ITGITPD 570
           I  +T +
Sbjct: 299 ILALTSN 305

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 26 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF 85
          ++KS+ L NN  + I    F  L  L+VLD   NN +   P       SL  L L  N+ 
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 60/265 (22%), Positives = 109/265 (41%), Gaps = 46/265 (17%)

Query: 322 GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE 381
           G ++AV S+   S  +   +L    +K+I+ L  + H+N V   G C E+      ++ E
Sbjct: 33  GEQVAVKSLKPESGGNHIADL----KKEIEILRNLYHENIVKYKGICTEDGGNGIKLIME 88

Query: 382 YAPNGTLFEHI-----HIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV 436
           + P+G+L E++      I   + L +   ++I  GM Y     +       H  L +  V
Sbjct: 89  FLPSGSLKEYLPRNKNKINLKQQLKYA--VQICKGMDYLGSRQY------VHRDLAARNV 140

Query: 437 HLTEDYAAKLSDLSFWNEIAMAEMAATSK-KLSS-----APSASLE------SNVYNFGV 484
            +  ++  K+ D      I   +   T K  L S     AP   ++      S+V++FGV
Sbjct: 141 LVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGV 200

Query: 485 LLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL--QQFVDPTLSSFDEEQL--------E 534
            L+E++T    Y     S       +L  + P   Q  V   +   +E +         E
Sbjct: 201 TLYELLT----YCDSESSP---MTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPE 253

Query: 535 TLGELIKSCVRADPEKRPTMRDIAA 559
            + +L++ C    P KR T +++  
Sbjct: 254 EVYQLMRKCWEFQPSKRTTFQNLIE 278

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 67/273 (24%), Positives = 114/273 (41%), Gaps = 53/273 (19%)

Query: 302 FSNVIGSSPIGTVYKG-TLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 360
             ++IG    G VYKG  L  G  +A+  +S+   K   + L+    ++ID L  + H N
Sbjct: 4   LGDLIGRGAFGVVYKGLNLETGDFVAIKQISLE--KIKEEALK-SIMQEIDLLKNLKHPN 60

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMRLRIAMGMAYCLEH 418
            V  IG  E  +     ++ EYA NG+L + I       E L       +A+ +   L+ 
Sbjct: 61  IVKYIGSIETSDSL--YIILEYAENGSLRQIIKKFGPFPESL-------VAVYVYQVLQG 111

Query: 419 MHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS-------- 469
           +  L    + H  + ++ +  T+D   KL+D      +A  ++   SK  +S        
Sbjct: 112 LAYLHEQGVIHRDIKAANILTTKDGVVKLADFG----VA-TKLNDVSKDDASVVGTPYWM 166

Query: 470 APS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV-- 521
           AP       AS  S++++ G  + E++TG  PY              L+ +  L + V  
Sbjct: 167 APEVIEMSGASTASDIWSLGCTVIELLTGNPPYY------------DLNPMAALFRIVQD 214

Query: 522 -DPTLSSFDEEQLETLGELIKSCVRADPEKRPT 553
             P L      +L+   + +  C + DP  RPT
Sbjct: 215 DHPPLPEGISPELK---DFLMQCFQKDPNLRPT 244

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 59/271 (21%), Positives = 119/271 (43%), Gaps = 34/271 (12%)

Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 361
           F   +GS   G V+ G     +++A+ +++  +        E  F ++   + K++H   
Sbjct: 8   FMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMS------EEDFIEEAKVMMKLSHPKL 61

Query: 362 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ 421
           V L G C +++P    +V E+  NG L  ++  ++   L   M L +   +   +E++ +
Sbjct: 62  VQLYGVCTQQKPL--YIVTEFMENGCLLNYLRQRQG-KLSKDMLLSMCQDVCEGMEYLER 118

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATS-KKLS---SAPSA---- 473
            +    H  L +    ++     K+SD      +   E  ++S  K     S P      
Sbjct: 119 NS--FIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFS 176

Query: 474 --SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 530
             S +S+V++FGVL++E+ T G++P+  +  S      + +  +    +   P L+S   
Sbjct: 177 KYSSKSDVWSFGVLMWEVFTEGKMPF--EKKS----NYEVVEMISRGFRLYRPKLAS--- 227

Query: 531 EQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
               T+ E++ SC    PE RPT  ++   +
Sbjct: 228 ---MTVYEVMYSCWHEKPEGRPTFAELLRAI 255

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 26/87 (29%), Positives = 46/87 (52%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
           L G +   + +LT ++ + L +N   G IP   G+++ L+ +  G+NN SG +P ++G  
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVL 99
            SL  L L  N+  G +   +  L+ L
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNL 262

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 1/100 (1%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
           LEG +   + +   ++ + L++NSFSG +P  F +L  +  LD  +NN  G + +     
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 112
            SL +L L  N F G L P+ +  + L    +   Q S A
Sbjct: 452 PSLQMLSLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGA 490

Length = 968

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 58/234 (24%)

Query: 358 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH----IKESEHLDW----------- 402
           HKN +NL+G C +E P    +V EYA +G L + +       E    D            
Sbjct: 75  HKNIINLLGVCTQEGPL--YVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQK 132

Query: 403 ---GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 459
                  ++A GM + L      +    H  L +  V +TED+  K++D     +I   +
Sbjct: 133 DLVSFAYQVARGMEF-LA-----SKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHID 186

Query: 460 M--AATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 507
                T+ +L     AP A      + +S+V++FGVLL+E+ T G  PY           
Sbjct: 187 YYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPY----------- 235

Query: 508 ADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
                G+ P+++        +  E+     + L  L++ C    P +RPT + +
Sbjct: 236 ----PGI-PVEELFKLLKEGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQL 284

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 57/221 (25%), Positives = 87/221 (39%), Gaps = 38/221 (17%)

Query: 304 NVIGSSPIGTVYKGTLS----NGVEIAVASVS---VASAKDWPKNLEVQFRKKIDTLSKV 356
             +G    G VY+G       + VE+ VA  +     S +D     E  F  +   +SK 
Sbjct: 12  RALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQD-----ESDFLMEALIMSKF 66

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI-----HIKESEHLDWGMRLRIAMG 411
           NH+N V LIG   E  P  R ++ E    G L   +       +    L     L  A  
Sbjct: 67  NHQNIVRLIGVSFERLP--RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARD 124

Query: 412 MA---YCLEHMHQLNPPI-AHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKL 467
           +A     LE  H ++  I A N L +          AK++D     +I  A       + 
Sbjct: 125 VAKGCKYLEENHFIHRDIAARNCLLTCK---GPGRVAKIADFGMARDIYRASYYRKGGRA 181

Query: 468 S-----SAPSASLE------SNVYNFGVLLFEMVT-GRLPY 496
                   P A L+      ++V++FGVLL+E+ + G +PY
Sbjct: 182 MLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPY 222

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 27/98 (27%), Positives = 47/98 (47%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
             G +   + SL  ++ + L +N FSG IP+  G+   L VLD   NN +G +P  L  +
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 110
            +L  L+L +N   G +   +   + L   ++ +   S
Sbjct: 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Length = 968

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 67/297 (22%), Positives = 125/297 (42%), Gaps = 68/297 (22%)

Query: 303 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNF 361
           S+++     G ++ G L +        V V + KD    ++V    ++   L  ++H+N 
Sbjct: 11  SDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNI 70

Query: 362 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG------------MRLRIA 409
           + ++  C E+      +++ Y   G L   + +++    +              M ++IA
Sbjct: 71  LPILHVCIED-GEPPFVLYPYMNWGNL--KLFLQQCRLGEANNPQALSTQQLVHMAIQIA 127

Query: 410 MGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LS---F------------- 451
            GM+    ++H+    + H  + +    + E+   K++D  LS   F             
Sbjct: 128 CGMS----YLHKRG--VIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENR 181

Query: 452 ---WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 507
              W    MA  +  +K+ SSA      S+V++FGVLL+E++T G+ PY V+    E   
Sbjct: 182 PVKW----MALESLVNKEYSSA------SDVWSFGVLLWELMTLGQTPY-VEIDPFE--M 228

Query: 508 ADYLSGVQPLQQFVD-PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
           A YL     L Q ++ P     DE     L  ++  C   DPE+RP+   +   L +
Sbjct: 229 AAYLKDGYRLAQPINCP-----DE-----LFAVMACCWALDPEERPSFSQLVQCLTD 275

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 52/228 (22%)

Query: 353 LSKVNHKNFVN--------------LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE 398
           LS++ H N V               ++GFCE  + + ++        G L     + E++
Sbjct: 53  LSQLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLK----EQKGKL-----LPENQ 103

Query: 399 HLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-AM 457
            ++W   ++IAM + Y L   H     I H  L +  V LT     K+ DL     +   
Sbjct: 104 VVEW--FVQIAMALQY-LHEKH-----ILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQ 155

Query: 458 AEMAAT--------SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAAD 509
            +MA+T        S +L S    + +S+V+  G  ++EM T  L +  +   +      
Sbjct: 156 CDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMAT--LKHAFNAKDMNSLVYR 213

Query: 510 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
            + G  P      P    +  E    LGELI + +   PEKRP+++ I
Sbjct: 214 IIEGKLP------PMPKDYSPE----LGELIATMLSKRPEKRPSVKSI 251

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 63/286 (22%), Positives = 120/286 (41%), Gaps = 55/286 (19%)

Query: 304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWP-KNLEVQFRKKIDTLSKV-NHKN 360
           +VIG    G V K  +  +G+ +  A   +   K++  K+    F  +++ L K+ +H N
Sbjct: 1   DVIGEGNFGQVLKARIKKDGLRMDAA---IKRMKEYASKDDHRDFAGELEVLCKLGHHPN 57

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH---IKES------EH-----LDWGMRL 406
            +NL+G CE        +  EYAP+G L + +    + E+       +     L     L
Sbjct: 58  IINLLGACEHRGYL--YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL 115

Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK 466
             A  +A  ++++ Q      H  L +  + + E+Y AK++D      ++  +     K 
Sbjct: 116 HFAADVARGMDYLSQ--KQFIHRDLAARNILVGENYVAKIADFG----LSRGQEVYVKKT 169

Query: 467 LSSAPSA------------SLESNVYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADYLS 512
           +   P              +  S+V+++GVLL+E+V+ G  PY  +    L +       
Sbjct: 170 MGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYR 229

Query: 513 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIA 558
             +P          + D+E    + +L++ C R  P +RP+   I 
Sbjct: 230 LEKP---------LNCDDE----VYDLMRQCWREKPYERPSFAQIL 262

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 67/294 (22%), Positives = 112/294 (38%), Gaps = 64/294 (21%)

Query: 286 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEV 344
           G PK K +  E         IG    GTVY    ++ G E+A+  +          NL+ 
Sbjct: 15  GDPKKKYTRFEK--------IGQGASGTVYTAIDVATGQEVAIKQM----------NLQQ 56

Query: 345 QFRKK-----IDTLSKVNHKNFVN-LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE 398
           Q +K+     I  + +  H N VN L  +   +E +   +V EY   G+L +   +    
Sbjct: 57  QPKKELIINEILVMRENKHPNIVNYLDSYLVGDELW---VVMEYLAGGSLTD---VVTET 110

Query: 399 HLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA-- 456
            +D G    +       LE +H     + H  + S  + L  D + KL+D  F  +I   
Sbjct: 111 CMDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE 168

Query: 457 -------------MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL 503
                        MA    T K          + ++++ G++  EMV G  PYL +N   
Sbjct: 169 QSKRSTMVGTPYWMAPEVVTRKAYGP------KVDIWSLGIMAIEMVEGEPPYLNEN--- 219

Query: 504 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
               A YL       +  +P      E+      + +  C+  D EKR + +++
Sbjct: 220 -PLRALYLIATNGTPELQNP------EKLSAIFRDFLNRCLEMDVEKRGSAKEL 266

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 53/246 (21%), Positives = 86/246 (34%), Gaps = 60/246 (24%)

Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 405
           F +    +S+++HK+ V L G C  +E    +MV EY   G L   +H +E  ++    +
Sbjct: 48  FFETASLMSQLSHKHLVKLYGVCVRDE---NIMVEEYVKFGPLDVFLH-REKNNVSLHWK 103

Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA-------AKLSDLSF------- 451
           L +A  +A  L ++      + H  +    + +             KLSD          
Sbjct: 104 LDVAKQLASALHYLEDKK--LVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSR 161

Query: 452 --------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGS 502
                   W  IA   +      L+ A       + ++FG  L E+ + G  P       
Sbjct: 162 EERVERIPW--IAPECIRNGQASLTIAA------DKWSFGTTLLEICSNGEEPL------ 207

Query: 503 LEDWAADYLSGVQPL---QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 559
                +   S  +      Q   P            L  LI  C   DP KRP+ R    
Sbjct: 208 -----STLSSSEKERFYQDQHRLPMPDC------AELANLINQCWTYDPTKRPSFRA--- 253

Query: 560 ILREIT 565
           ILR++ 
Sbjct: 254 ILRDLN 259

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 50/241 (20%)

Query: 358 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM------------- 404
           HKN +NL+G C ++ P    ++ EYA  G L E++  +    +D+               
Sbjct: 77  HKNIINLLGACTQDGPL--YVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFK 134

Query: 405 -----RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 459
                  ++A GM Y             H  L +  V +TED   K++D     ++   +
Sbjct: 135 DLVSCAYQVARGMEYLASQ------KCIHRDLAARNVLVTEDNVMKIADFGLARDVHNID 188

Query: 460 M--AATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 507
                T+ +L     AP A      + +S+V++FGVLL+E+ T G  PY           
Sbjct: 189 YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPY-------PGIP 241

Query: 508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI 567
            + L  +      +D   +   E     L  +++ C  A P +RPT + +   L  +  +
Sbjct: 242 VEELFKLLKEGHRMDKPANCTHE-----LYMIMRECWHAVPSQRPTFKQLVEDLDRVLTV 296

Query: 568 T 568
           T
Sbjct: 297 T 297

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 63/259 (24%), Positives = 99/259 (38%), Gaps = 50/259 (19%)

Query: 337 DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE 396
           D  K     F K+I  +S++ + N + L+G C  ++P    M+ EY  NG L + +  +E
Sbjct: 55  DVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSDDPLC--MITEYMENGDLNQFLSQRE 112

Query: 397 --------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY 442
                         S      M ++IA GM Y    +  LN    H  L +    +   Y
Sbjct: 113 IESTFTHANNIPSVSIANLLYMAVQIASGMKY----LASLN--FVHRDLATRNCLVGNHY 166

Query: 443 AAKLSDLSFWNEIAMAE--------------MAATSKKLSSAPSASLESNVYNFGVLLFE 488
             K++D      +   +              MA  S  L    +A   S+V+ FGV L+E
Sbjct: 167 TIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTA---SDVWAFGVTLWE 223

Query: 489 MVT--GRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCV 544
           M T     PY  L D   +E+    + +  + +     P   S        + +L+  C 
Sbjct: 224 MFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQIYLSQTPLCPS-------PVFKLMMRCW 276

Query: 545 RADPEKRPTMRDIAAILRE 563
             D + RPT   I   LRE
Sbjct: 277 SRDIKDRPTFNKIHHFLRE 295

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 62/265 (23%), Positives = 103/265 (38%), Gaps = 55/265 (20%)

Query: 337 DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL---FEHIH 393
           D  KN    F K++  LS++   N + L+G C +E+P    M+ EY  NG L       H
Sbjct: 57  DANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDEDPLC--MITEYMENGDLNQFLSSHH 114

Query: 394 IKESEH--------------LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT 439
           + + E               + +   L +A+ +A  ++++  LN    H  L +    + 
Sbjct: 115 LDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLN--FVHRDLATRNCLVG 172

Query: 440 EDYAAKLSDLSFWNEIA-----------------MAEMAATSKKLSSAPSASLESNVYNF 482
           E+   K++D      +                  MA       K ++A      S+V+ F
Sbjct: 173 ENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTA------SDVWAF 226

Query: 483 GVLLFE--MVTGRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE 538
           GV L+E  M+    PY  L D   +E+    +    + +  F  P          + L E
Sbjct: 227 GVTLWEILMLCKEQPYGELTDEQVIENAGEFFRDQGRQVYLFRPPPCP-------QGLYE 279

Query: 539 LIKSCVRADPEKRPTMRDIAAILRE 563
           L+  C   D  +RP+  DI A L E
Sbjct: 280 LMLQCWSRDCRERPSFSDIHAFLTE 304

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 7e-05
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGPLPNDLGI 71
           + G ++  I  L +I++I L NN  SG IP+  F     L  L+  +NNF+G +P   G 
Sbjct: 81  ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GS 138

Query: 72  NHSLTILLLDNNDFVGSLSPEI 93
             +L  L L NN   G +  +I
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDI 160

Length = 968

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 28/161 (17%)

Query: 407 RIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLS----FWNEIAMAEMA 461
           +IA+ +   L ++H +    I H  +  S + +      KL D        N +A     
Sbjct: 104 KIAVAVLKGLTYLHEKHK--IIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKT-FV 160

Query: 462 ATSKKLS----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL 517
            TS  ++         S++S++++ G+ L E+ TGR PY                  + L
Sbjct: 161 GTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPY-------PPENDPPDGIFELL 213

Query: 518 QQFVD---PTLSS--FDEEQLETLGELIKSCVRADPEKRPT 553
           Q  V+   P L S  F  +      + +  C+  DP +RP+
Sbjct: 214 QYIVNEPPPRLPSGKFSPD----FQDFVNLCLIKDPRERPS 250

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 63/287 (21%), Positives = 104/287 (36%), Gaps = 73/287 (25%)

Query: 305 VIGSSPIGTVYKG-TLSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFV 362
           V+G    G VY    LS  V IA+  +    ++       VQ   ++I   S + H+N V
Sbjct: 15  VLGKGTYGIVYAARDLSTQVRIAIKEIPERDSR------YVQPLHEEIALHSYLKHRNIV 68

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYC------- 415
             +G   E   F   M  E  P G+L   +  K      WG        + +        
Sbjct: 69  QYLGSDSENGFFKIFM--EQVPGGSLSALLRSK------WGPLKDNEQTIIFYTKQILEG 120

Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAA--KLSDLSFWNEIAMAEMAATSKKLSS---- 469
           L+++H     I H  +    V L   Y+   K+SD              TSK+L+     
Sbjct: 121 LKYLHDNQ--IVHRDIKGDNV-LVNTYSGVVKISDF------------GTSKRLAGINPC 165

Query: 470 -----------APSA--------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY 510
                      AP             +++++ G  + EM TG+ P+ ++ G  +  AA +
Sbjct: 166 TETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPF-IELGEPQ--AAMF 222

Query: 511 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             G+  +   +  +LS             I  C   DP+KR +  D+
Sbjct: 223 KVGMFKIHPEIPESLS-------AEAKNFILRCFEPDPDKRASAHDL 262

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 56/250 (22%), Positives = 102/250 (40%), Gaps = 57/250 (22%)

Query: 340 KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH 399
           +N    F +    +S+++HK+ V   G C   +    +MV EY   G+L    ++K++++
Sbjct: 40  RNYSESFFEAASMMSQLSHKHLVLNYGVCVCGD--ESIMVQEYVKFGSL--DTYLKKNKN 95

Query: 400 L---DWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 456
           L    W  +L +A  +A+ L  +      + H  + +  V L  +   K  +  F     
Sbjct: 96  LINISW--KLEVAKQLAWALHFLEDKG--LTHGNVCAKNVLLIREEDRKTGNPPFI---- 147

Query: 457 MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYL----VDNGSLEDWAAD--- 509
                    KLS  P  S+        VL  E++  R+P++    ++N      AAD   
Sbjct: 148 ---------KLSD-PGISIT-------VLPKEILLERIPWVPPECIENPQNLSLAADKWS 190

Query: 510 --------YLSGVQPLQQFVDPTLSSFDEEQLE-------TLGELIKSCVRADPEKRPTM 554
                   +  G +PL          F E++ +        L  LI  C+  +P+ RP+ 
Sbjct: 191 FGTTLWEIFSGGDKPLSALDSQKKLQFYEDRHQLPAPKWTELANLINQCMDYEPDFRPSF 250

Query: 555 RDIAAILREI 564
           R   AI+R++
Sbjct: 251 R---AIIRDL 257

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 61/275 (22%), Positives = 115/275 (41%), Gaps = 46/275 (16%)

Query: 306 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNL 364
           +G+   G V+  T +   ++AV ++        P ++ V+ F  + + +  + H   V L
Sbjct: 14  LGAGQFGEVWMATYNKHTKVAVKTMK-------PGSMSVEAFLAEANVMKTLQHDKLVKL 66

Query: 365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMH 420
                +E  +   ++ E+   G+L + +   E              +IA GMA+    + 
Sbjct: 67  HAVVTKEPIY---IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF----IE 119

Query: 421 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW-----NEIAMAEMAATSKKLSSAPSA-- 473
           Q N    H  L ++ + ++     K++D         NE    E A    K + AP A  
Sbjct: 120 QRN--YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWT-APEAIN 176

Query: 474 ----SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 528
               +++S+V++FG+LL E+VT GR+PY              +S  + ++          
Sbjct: 177 FGSFTIKSDVWSFGILLMEIVTYGRIPY------------PGMSNPEVIRALERGYRMPR 224

Query: 529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            E   E L  ++  C +  PE+RPT   I ++L +
Sbjct: 225 PENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD 259

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 25  THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDL-GINHSLTILLLDNN 83
           + + SI L   + SG I      L  ++ ++  +N  SGP+P+D+   + SL  L L NN
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 84  DFVGSLS 90
           +F GS+ 
Sbjct: 129 NFTGSIP 135

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
           L G +   + +L +++ + L  N  SG IP     L++L  LD   N+ SG +P  +   
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307

Query: 73  HSLTILLLDNNDFVGSLSPE----IYKLQVL 99
            +L IL L +N+F G + P     + +LQVL
Sbjct: 308 QNLEILHLFSNNFTGKI-PVALTSLPRLQVL 337

Length = 968

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 20/166 (12%)

Query: 344 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG 403
           V   K++  L +V+H   + L  F  E +     M+ EY P G LF ++  + S      
Sbjct: 48  VHNEKRV--LKEVSHPFIIRL--FWTEHDQRFLYMLMEYVPGGELFSYL--RNSGRFSNS 101

Query: 404 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA--MAEMA 461
             L  A  +   LE++H     I +  L    + L ++   KL+D  F  ++      + 
Sbjct: 102 TGLFYASEIVCALEYLHSKE--IVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLC 159

Query: 462 ATSKKLSSAPSASLESNVYN-------FGVLLFEMVTGRLPYLVDN 500
            T + L  AP   ++S  +N        G+L++EM+ G  P+  DN
Sbjct: 160 GTPEYL--APE-VIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDN 202

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 66/283 (23%), Positives = 111/283 (39%), Gaps = 71/283 (25%)

Query: 301 DFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
                IG    G VYK T    G E+A+  + +       +N E+    +I  +    H 
Sbjct: 22  KNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRK-----QNKELII-NEILIMKDCKHP 75

Query: 360 NFVNLIG-FCEEEEPFTRMMVFEYAPNGTLFEHIH-----IKESEHLDWGMRLRIAMGMA 413
           N V+    +   +E +   +V EY   G+L + I      + E +             +A
Sbjct: 76  NIVDYYDSYLVGDELW---VVMEYMDGGSLTDIITQNFVRMNEPQ-------------IA 119

Query: 414 Y-C------LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK 466
           Y C      LE++H  N  + H  + S  + L++D + KL+D  F  ++        SK+
Sbjct: 120 YVCREVLQGLEYLHSQN--VIHRDIKSDNILLSKDGSVKLADFGFAAQLT----KEKSKR 173

Query: 467 LS-------SAPSASLESN------VYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL-- 511
            S        AP      +      +++ G++  EM  G  PYL +   L    A +L  
Sbjct: 174 NSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPP-LR---ALFLIT 229

Query: 512 -SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 553
             G+ PL+   +P   S          + +  C+  DPEKRP+
Sbjct: 230 TKGIPPLK---NPEKWS------PEFKDFLNKCLVKDPEKRPS 263

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 474 SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD---PTLSSFDE 530
           +++S+V++ G+ + E+  G+ P+   N   +D   D +  +  LQQ V    P L S D 
Sbjct: 180 TVKSDVWSLGISIIELALGKFPFAFSNI-DDDGQDDPMGILDLLQQIVQEPPPRLPSSDF 238

Query: 531 EQLETLGELIKSCVRADPEKRPTMRDIAA 559
            +   L + + +C+  DP +RPT + + A
Sbjct: 239 PED--LRDFVDACLLKDPTERPTPQQLCA 265

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 50/243 (20%)

Query: 358 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL----------- 406
           HKN +NL+G C ++ P    ++ EYA  G L E++  +    +++   +           
Sbjct: 80  HKNIINLLGACTQDGPL--YVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFK 137

Query: 407 -------RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 459
                  ++A GM Y             H  L +  V +TE+   K++D     ++   +
Sbjct: 138 DLVSCTYQVARGMEYLASQ------KCIHRDLAARNVLVTENNVMKIADFGLARDVNNID 191

Query: 460 M--AATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 507
                T+ +L     AP A      + +S+V++FGVL++E+ T G  PY           
Sbjct: 192 YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPY-------PGIP 244

Query: 508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI 567
            + L  +      +D   +  +E     L  +++ C  A P  RPT + +   L  I  +
Sbjct: 245 VEELFKLLKEGHRMDKPANCTNE-----LYMMMRDCWHAIPSHRPTFKQLVEDLDRILTL 299

Query: 568 TPD 570
           T +
Sbjct: 300 TTN 302

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 49/275 (17%)

Query: 303 SNVIGSSPIGTVYKG-TLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 361
            N IG    G VY    L  G  +AV  + +      PK ++ +   ++  L  + H N 
Sbjct: 5   GNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND--PKTIK-EIADEMKVLELLKHPNL 61

Query: 362 VNLIGFCEEEEPFTRMMVF-EYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEH 418
           V   G     E   ++ +F EY   GTL E +       EH+     L++  G+AY   H
Sbjct: 62  VKYYGVEVHRE---KVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSH 118

Query: 419 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA---------MAEMAATSKKLSS 469
                  I H  +  + + L  +   KL D     ++          +  +A T   +  
Sbjct: 119 G------IVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYM-- 170

Query: 470 APSASLESN---------VYNFGVLLFEMVTGRLPY-LVDNGSLEDWAADYLSGVQPLQQ 519
           AP                +++ G ++ EM TG+ P+  +DN    ++   +  G     +
Sbjct: 171 APEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDN----EFQIMFHVGAG--HK 224

Query: 520 FVDPTLSSFDEEQLETLG-ELIKSCVRADPEKRPT 553
              P +   D  QL   G + +  C+ +DP+KRPT
Sbjct: 225 ---PPIP--DSLQLSPEGKDFLDRCLESDPKKRPT 254

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 57/270 (21%), Positives = 113/270 (41%), Gaps = 50/270 (18%)

Query: 330 VSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL- 388
           V+V + KD        F+++ + L+ + H++ V   G C + +P   +MVFEY  +G L 
Sbjct: 38  VAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPL--IMVFEYMKHGDLN 95

Query: 389 -FEHIHIKESEHLDWGMRL----------------RIAMGMAYCLEHMHQLNPPIAHNYL 431
            F   H  ++  L  G                   +IA GM Y L   H       H  L
Sbjct: 96  KFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVY-LASQH-----FVHRDL 149

Query: 432 NSSAVHLTEDYAAKLSDLSFWNEIAMAEM----AATSKKLSSAPSASL-------ESNVY 480
            +    +  +   K+ D     ++   +       T   +   P  S+       ES+V+
Sbjct: 150 ATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVW 209

Query: 481 NFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGEL 539
           +FGV+L+E+ T G+ P+   + +      + ++  + L++   P +        + + ++
Sbjct: 210 SFGVILWEIFTYGKQPWFQLSNTE---VIECITQGRVLER---PRVCP------KEVYDI 257

Query: 540 IKSCVRADPEKRPTMRDIAAILREITGITP 569
           +  C + +P++R  +++I  IL  +   TP
Sbjct: 258 MLGCWQREPQQRLNIKEIYKILHALGKATP 287

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 49/187 (26%)

Query: 343 EVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW 402
           E++  K I       HKN +NL+G C +E P    ++ EYA  G L E +  +     D+
Sbjct: 67  EMELMKLIG-----KHKNIINLLGVCTQEGPL--YVIVEYAAKGNLREFLRARRPPGPDY 119

Query: 403 GMRL------------------RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAA 444
              +                  ++A GM Y LE    +     H  L +  V +TED   
Sbjct: 120 TFDITKVPEEQLSFKDLVSCAYQVARGMEY-LESRRCI-----HRDLAARNVLVTEDNVM 173

Query: 445 KLSDLSFWNEIAMAEMAATSKKLSS--------APSA------SLESNVYNFGVLLFEMV 490
           K++D      +   +     KK S+        AP A      + +S+V++FG+L++E+ 
Sbjct: 174 KIADFGLARGVHDIDY---YKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIF 230

Query: 491 T-GRLPY 496
           T G  PY
Sbjct: 231 TLGGSPY 237

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 28/87 (32%), Positives = 41/87 (47%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
           L G +  EI  LT +  + L  N+ +G IP   G L+ L+ L    N  SGP+P  +   
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVL 99
             L  L L +N   G +   + +LQ L
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNL 310

Length = 968

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 39/272 (14%)

Query: 305 VIGSSPIGTVYKGTL---SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 361
           V+GS   GTVYKG        V+I VA   +  A     N E+     +  ++ V++ + 
Sbjct: 14  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYV--MASVDNPHV 71

Query: 362 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE----SEH-LDWGMRLRIAMGMAYCL 416
             L+G C      T  ++ +  P G L +++   +    S++ L+W   ++IA GM Y L
Sbjct: 72  CRLLGICLTS---TVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--VQIAKGMNY-L 125

Query: 417 EHMHQLNPPI-AHNYL--NSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSA 473
           E    ++  + A N L      V +T+   AKL  L    +   AE      K  +  S 
Sbjct: 126 EERRLVHRDLAARNVLVKTPQHVKITDFGLAKL--LGADEKEYHAEGGKVPIKWMALESI 183

Query: 474 -----SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 527
                + +S+V+++GV ++E++T G  PY   +G      +  L   + L Q   P + +
Sbjct: 184 LHRIYTHQSDVWSYGVTVWELMTFGSKPY---DGIPASEISSILEKGERLPQ---PPICT 237

Query: 528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA 559
            D      +  ++  C   D + RP  R++  
Sbjct: 238 ID------VYMIMVKCWMIDADSRPKFRELII 263

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 62/259 (23%), Positives = 107/259 (41%), Gaps = 51/259 (19%)

Query: 337 DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI---- 392
           D  KN    F K+I  +S++   N + L+  C   +P    M+ EY  NG L + +    
Sbjct: 57  DANKNARNDFLKEIKIMSRLKDPNIIRLLAVCITSDPLC--MITEYMENGDLNQFLSRHE 114

Query: 393 -----HIKESEHLDWG----MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA 443
                   +   + +     M  +IA GM Y    +  LN    H  L +    + ++Y 
Sbjct: 115 PQEAAEKADVVTISYSTLIFMATQIASGMKY----LSSLN--FVHRDLATRNCLVGKNYT 168

Query: 444 AKLSDLSFWNEIAMAE--------------MAATSKKLSSAPSASLESNVYNFGVLLFEM 489
            K++D      +   +              M+  S  L    +A   S+V+ FGV L+E+
Sbjct: 169 IKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTA---SDVWAFGVTLWEI 225

Query: 490 VT--GRLPY--LVDNGSLEDWAADYLSGVQPLQQFV-DPTLSSFDEEQLETLGELIKSCV 544
           +T     PY  L D   +E+    +    Q  Q ++  P L        ++L +L+ SC 
Sbjct: 226 LTLCKEQPYSQLSDEQVIENTGEFFRD--QGRQVYLPKPALCP------DSLYKLMLSCW 277

Query: 545 RADPEKRPTMRDIAAILRE 563
           R + ++RP+ ++I A L E
Sbjct: 278 RRNAKERPSFQEIHATLLE 296

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 28/88 (31%), Positives = 39/88 (44%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
           L G +  +I S + +K + L  N   G IP     L  LE L    N   G +P +LG  
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVLS 100
            SL  + L  N+  G +  EI  L  L+
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Length = 968

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 67/313 (21%), Positives = 127/313 (40%), Gaps = 57/313 (18%)

Query: 278 QLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAK 336
           +L+     G PK K +  E         IG    GTVY    ++ G E+A+  +      
Sbjct: 8   KLRSIVSVGDPKKKYTRFEK--------IGQGASGTVYTAMDVATGQEVAIRQM------ 53

Query: 337 DWPKNLEVQFRKK-----IDTLSKVNHKNFVN-LIGFCEEEEPFTRMMVFEYAPNGTLFE 390
               NL+ Q +K+     I  + +  + N VN L  +   +E +   +V EY   G+L +
Sbjct: 54  ----NLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELW---VVMEYLAGGSLTD 106

Query: 391 HIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS 450
              +     +D G    +       LE +H  +  + H  + S  + L  D + KL+D  
Sbjct: 107 ---VVTETCMDEGQIAAVCRECLQALEFLH--SNQVIHRDIKSDNILLGMDGSVKLTDFG 161

Query: 451 FWNEIA-----MAEMAAT----SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG 501
           F  +I       + M  T    + ++ +  +   + ++++ G++  EM+ G  PYL +N 
Sbjct: 162 FCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN- 220

Query: 502 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI---- 557
                 A YL       +  +P      E+      + +  C+  D EKR + +++    
Sbjct: 221 ---PLRALYLIATNGTPELQNP------EKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQ 271

Query: 558 -AAILREITGITP 569
              I + ++ +TP
Sbjct: 272 FLKIAKPLSSLTP 284

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 4   MCRNLKDLCLE-----GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 58
            CR+L+ + L+     G L  E   L  +  + + NN+  G I     ++  L++L    
Sbjct: 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461

Query: 59  NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQS 118
           N F G LP+  G +  L  L L  N F G++  ++  L  L + ++ E +LS     E S
Sbjct: 462 NKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520

Length = 968

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 53/260 (20%), Positives = 98/260 (37%), Gaps = 60/260 (23%)

Query: 341 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH------- 393
           +++  F+++   +++ +H N V L+G C   +P    ++FEY   G L E +        
Sbjct: 50  DMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMC--LLFEYMAYGDLNEFLRHRSPRAQ 107

Query: 394 -------------------IKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSS 434
                              +  +E L   +  ++A GMAY  E          H  L + 
Sbjct: 108 CSLSHSTSSARKCGLNPLPLSCTEQL--CIAKQVAAGMAYLSERKF------VHRDLATR 159

Query: 435 AVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK----LSSAPSAS-------LESNVYNFG 483
              + E+   K++D      I  A+    S+     +   P  S        ES+V+ +G
Sbjct: 160 NCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYG 219

Query: 484 VLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKS 542
           V+L+E+ + G  PY              ++  + +    D  + S  +     L  L++ 
Sbjct: 220 VVLWEIFSYGMQPYY------------GMAHEEVIYYVRDGNVLSCPDNCPLELYNLMRL 267

Query: 543 CVRADPEKRPTMRDIAAILR 562
           C    P  RP+   I  IL+
Sbjct: 268 CWSKLPSDRPSFASINRILQ 287

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 34/223 (15%)

Query: 353 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH--IKESEHLD----WGMRL 406
           L ++ H N V       +    T  +V EY   G L + I    KE ++++    W +  
Sbjct: 53  LRELKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILT 112

Query: 407 RIAMGMAYCLEHMHQLNPP---IAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT 463
           ++ + +  C    H  + P   + H  L  + + L  +   KL D      +      A 
Sbjct: 113 QLLLALYEC----HNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAK 168

Query: 464 ---------SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV 514
                    S +  +  S   +S++++ G L++E+     P+          A + L   
Sbjct: 169 TYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFT---------ARNQLQLA 219

Query: 515 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             +++     +      +L    E+IKS +  DP+KRP+  ++
Sbjct: 220 SKIKEGKFRRIPYRYSSELN---EVIKSMLNVDPDKRPSTEEL 259

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 76/290 (26%), Positives = 129/290 (44%), Gaps = 54/290 (18%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTL---SNGVEIAVASVSVASAKDWPK-NLEVQ 345
           LK +EL+        V+GS   GTVYKG        V+I VA + V      PK N E+ 
Sbjct: 4   LKETELKKV-----KVLGSGAFGTVYKGIWIPDGENVKIPVA-IKVLRENTSPKANKEIL 57

Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI-----HIKESEHL 400
               +  ++ V       L+G C      T  +V +  P G L +++      I   + L
Sbjct: 58  DEAYV--MAGVGSPYVCRLLGICLTS---TVQLVTQLMPYGCLLDYVRENKDRIGSQDLL 112

Query: 401 DWGMRLRIAMGMAYCLEHMHQLNPPI-AHNYLNSSAVH--LTEDYAAKLSDL------SF 451
           +W   ++IA GM+Y LE +  ++  + A N L  S  H  +T+   A+L D+      + 
Sbjct: 113 NWC--VQIAKGMSY-LEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHAD 169

Query: 452 WNEIAMAEMAATS---KKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 507
             ++ +  MA  S   ++ +       +S+V+++GV ++E++T G  PY   +G      
Sbjct: 170 GGKVPIKWMALESILHRRFTH------QSDVWSYGVTVWELMTFGAKPY---DGIPAREI 220

Query: 508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
            D L   + L Q   P + + D   +     ++K C   D E RP  R++
Sbjct: 221 PDLLEKGERLPQ---PPICTIDVYMI-----MVK-CWMIDSECRPRFREL 261

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 69/276 (25%), Positives = 116/276 (42%), Gaps = 47/276 (17%)

Query: 303 SNVIGSSPIGTV-YKGTLSNGVEIAVASVSVASAKDWPKN---LEVQFRKKIDTLSKVN- 357
           S V+GS   GTV     +S+G   AV  V +    +  KN    EV      D  S V  
Sbjct: 37  SRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKC 96

Query: 358 HKNFVNLIGFCEEEEPFTRMM---VFEYAPNGTLFEHIHIKES------EHLDWGMRLRI 408
           H++F       +   P   +M   V +YA  G L + I  +        EH + G+ L I
Sbjct: 97  HEDFA----KKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREH-EAGL-LFI 150

Query: 409 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS 468
            + +A  + H+H  +  + H  + S+ + L  +   KL D  F    A        +   
Sbjct: 151 QVLLA--VHHVHSKH--MIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFC 206

Query: 469 SAP-----------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL 517
             P             S ++++++ GVLL+E++T + P+  D  ++E+     L+G    
Sbjct: 207 GTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPF--DGENMEEVMHKTLAG---- 260

Query: 518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 553
            ++ DP   S   E  E +  L+ S    DP++RP+
Sbjct: 261 -RY-DPLPPSISPEMQEIVTALLSS----DPKRRPS 290

Length = 496

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 121 ERSIKWNGVLDEDTVQRRLLQINPFRNL---KGRILGIAPTSSPPPSSDAIPPASVGSSD 177
           E  I+   ++     + R L+          +G  +  A    PP S   +PP S     
Sbjct: 147 EIEIQMIDLIGMQRAEIRGLREMLVELQIGGRGGNIPGAIQPPPPSSLPGLPPGS----- 201

Query: 178 DTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIP 219
            + A   SS   + +     +   P P+P Q   P  SIP P
Sbjct: 202 SSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAP 243

Length = 582

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 67/297 (22%), Positives = 123/297 (41%), Gaps = 54/297 (18%)

Query: 278 QLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAK 336
           +L+     G PK K +  E         IG    GTV+    ++ G E+A+  +      
Sbjct: 7   KLRTIVSIGDPKKKYTRYEK--------IGQGASGTVFTAIDVATGQEVAIKQI------ 52

Query: 337 DWPKNLEVQFRKK-----IDTLSKVNHKNFVNLI-GFCEEEEPFTRMMVFEYAPNGTLFE 390
               NL+ Q +K+     I  + ++ + N VN +  F   +E F   +V EY   G+L +
Sbjct: 53  ----NLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELF---VVMEYLAGGSLTD 105

Query: 391 HIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP-PIAHNYLNSSAVHLTEDYAAKLSDL 449
              +     +D     +IA     CL+ +  L+   + H  + S  V L  D + KL+D 
Sbjct: 106 ---VVTETCMD---EAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDF 159

Query: 450 SFWNEIA-----MAEMAAT----SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN 500
            F  +I       + M  T    + ++ +  +   + ++++ G++  EMV G  PYL +N
Sbjct: 160 GFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN 219

Query: 501 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
                  A YL       +  +P      E+      + +  C+  D EKR + +++
Sbjct: 220 ----PLRALYLIATNGTPELQNP------EKLSPIFRDFLNRCLEMDVEKRGSAKEL 266

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 457 MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
           MA     S   +  P+ +++S+V++ G+ + EM  GR PY  +          Y +    
Sbjct: 168 MAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPET---------YANIFAQ 218

Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 553
           L   VD    +      +   + +  C+   P +RPT
Sbjct: 219 LSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRRPT 255

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 62/287 (21%), Positives = 113/287 (39%), Gaps = 52/287 (18%)

Query: 306 IGSSPIGTVY----KGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 361
           +G    G VY    KG + +  E  VA  +V  A    + +E  F  +   + + N  + 
Sbjct: 14  LGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIE--FLNEASVMKEFNCHHV 71

Query: 362 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWGMRL-----------RIA 409
           V L+G   + +P   +++ E    G L  ++  ++     +                 IA
Sbjct: 72  VRLLGVVSQGQP--TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIA 129

Query: 410 MGMAYCLEHMHQLNP-PIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK-- 466
            GMAY       LN     H  L +    + ED+  K+ D     +I   +      K  
Sbjct: 130 DGMAY-------LNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGL 182

Query: 467 --LSSAPSASLE-------SNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP 516
             +      SL+       S+V++FGV+L+E+ T    PY              +S  Q 
Sbjct: 183 LPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPY------------QGMSNEQV 230

Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
           L+  ++  L    +   + L EL++ C + +P+ RP+  +I + ++E
Sbjct: 231 LRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE 277

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 22 QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
          + L ++K + L  N+ + I PE F  L  L  LD   NN 
Sbjct: 21 KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 56/286 (19%)

Query: 306 IGSSPIGTVYKGTLSNGVE--IAVASVSV---ASAKDWPKNLEVQFRKKIDTLS----KV 356
           +GS   G VYK    N  +  +A+  ++V   A  KD  +  +      +  ++    ++
Sbjct: 8   LGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKD-KRERDKSIGDIVSEVTIIKEQL 66

Query: 357 NHKNFVNLI-GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE-----SEHLDWGMRLRIAM 410
            H N V     F E +  +  M + E AP G  F    +KE     +E   W + +++ +
Sbjct: 67  RHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHF--NSLKEKKQRFTEERIWNIFVQMVL 124

Query: 411 GMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSA 470
            + Y    +H+    I H  L  + + L ED    ++D        +A+      KL+S 
Sbjct: 125 ALRY----LHK-EKRIVHRDLTPNNIMLGEDDKVTITDF------GLAKQKQPESKLTSV 173

Query: 471 PSASLES--------------NVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV-Q 515
               L S              +V+ FG +L++M T + P+   N  +   A   +  V +
Sbjct: 174 VGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTN--MLSLATKIVEAVYE 231

Query: 516 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
           PL    +   S       E + ++I SC+  D E RP +  ++A++
Sbjct: 232 PLP---EGMYS-------EDVTDVITSCLTPDAEARPDIIQVSAMI 267

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 156 APTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPS 215
           +P  SP     A  P            +  +       P +L +PA AP P Q P    S
Sbjct: 383 SPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAP---GARPAELPSPASAPTPEQQPPVARS 439

Query: 216 IPIPR-PSSSQSHQKSGGSSS 235
            P+P  P +S     + G   
Sbjct: 440 APLPPSPQASAPRNVASGKPG 460

Length = 620

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 56/265 (21%), Positives = 102/265 (38%), Gaps = 45/265 (16%)

Query: 307 GSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           GSS  G VYK      G   A+  + V   +        Q  +++ TL        V   
Sbjct: 12  GSS--GVVYKVRHKPTGKIYALKKIHVDGDE----EFRKQLLRELKTLRSCESPYVVKCY 65

Query: 366 G-FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP 424
           G F +E E     +V EY   G+L     +K+   +   +   IA  +   L+++H    
Sbjct: 66  GAFYKEGEIS---IVLEYMDGGSL--ADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRH 120

Query: 425 PIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSA--------P----- 471
            I H  +  S + +      K++D      I+   +  T  + ++         P     
Sbjct: 121 -IIHRDIKPSNLLINSKGEVKIADFG----IS-KVLENTLDQCNTFVGTVTYMSPERIQG 174

Query: 472 -SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS--F 528
            S S  +++++ G+ L E   G+ P+L            +   +Q +     P+L +  F
Sbjct: 175 ESYSYAADIWSLGLTLLECALGKFPFLPPGQ------PSFFELMQAICDGPPPSLPAEEF 228

Query: 529 DEEQLETLGELIKSCVRADPEKRPT 553
             E      + I +C++ DP+KRP+
Sbjct: 229 SPE----FRDFISACLQKDPKKRPS 249

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 51/194 (26%)

Query: 407 RIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI--AMAEMAAT 463
           +IA+ +   LE++H +L+  + H  +  S V +  +   KL D      +  ++A+    
Sbjct: 107 KIAVSIVKALEYLHSKLS--VIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDA 164

Query: 464 SKKLSSAPSA----------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 513
             K   AP             ++S+V++ G+ + E+ TGR PY       + W   +   
Sbjct: 165 GCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPY-------DSWKTPF--- 214

Query: 514 VQPLQQFVD---PTL--SSFDEEQLETLGELIKSCVRADPEKRPTMR------------- 555
            Q L+Q V+   P L    F  E      + +  C++ + ++RP                
Sbjct: 215 -QQLKQVVEEPSPQLPAEKFSPE----FQDFVNKCLKKNYKERPNYPELLQHPFFELHLS 269

Query: 556 ---DIAAILREITG 566
              D+A+ +  I G
Sbjct: 270 KNTDVASFVSLILG 283

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 7   NLKDLCLE-----GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
            L++L L      G +  ++ SL+ +  + L  N  SG IP+     ++L  LD  HN  
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Query: 62  SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 99
           SG +P        L+ L L  N   G +   +  ++ L
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573

Length = 968

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 159 SSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVS----PPKLSNPAPAPAPNQTPTPTP 214
           + P  +S + PP+S        +           S    P    +  P P+P     P+P
Sbjct: 177 ADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSP 236

Query: 215 SIPIPRPSSSQSHQKSGGSSSK 236
                 P      Q    S++K
Sbjct: 237 PPGPAAPPPPPVQQVPPLSTAK 258

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 30/222 (13%)

Query: 295 LEAACEDFSNVIGSSPIGTVYKGTLS--NGVEIAVASVSVASAKDWPKNLEVQFRKKIDT 352
           ++ +C     VIG+   G V +G L      EI VA  ++ S   + +     F  +   
Sbjct: 1   IDVSCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSG--YTEKQRRDFLSEASI 58

Query: 353 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW---GMRLRIA 409
           + + +H N ++L G   +  P   M++ E+  NG L   +   + +       GM   IA
Sbjct: 59  MGQFDHPNIIHLEGVVTKSRPV--MIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIA 116

Query: 410 MGMAYCLEHMHQLNPPIAHNYL-NSSAVHLTEDYAAK------LSDLSFWNEIA------ 456
            GM Y  E  +      A N L NS+ V    D+          SD ++ + +       
Sbjct: 117 AGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIR 176

Query: 457 -MAEMAATSKKLSSAPSASLESNVYNFGVLLFE-MVTGRLPY 496
             A  A   +K +SA      S+V+++G++++E M  G  PY
Sbjct: 177 WTAPEAIAYRKFTSA------SDVWSYGIVMWEVMSYGERPY 212

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 28/220 (12%)

Query: 295 LEAACEDFSNVIGSSPIGTVYKGTLS--NGVEIAVASVSVASAKDWPKNLEVQFRKKIDT 352
           ++A+C     VIG+   G V  G L      EI VA  ++ +   + +     F  +   
Sbjct: 1   IDASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAG--YTEKQRRDFLSEASI 58

Query: 353 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL--FEHIHIKESEHLDW-GMRLRIA 409
           + + +H N ++L G   + +P   M+V EY  NG+L  F   H  +   +   GM   IA
Sbjct: 59  MGQFDHPNIIHLEGVVTKSKPV--MIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIA 116

Query: 410 MGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA---TSKK 466
            GM Y L  M  +     H  L +  + +  +   K+SD      +     AA      K
Sbjct: 117 SGMKY-LSDMGYV-----HRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK 170

Query: 467 LS---SAPSA------SLESNVYNFGVLLFE-MVTGRLPY 496
           +    +AP A      +  S+V+++G++++E M  G  PY
Sbjct: 171 IPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPY 210

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	592
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.98
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.98
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.98
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.98
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.98
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.98
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.98
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.98
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.98
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.98
PLN00009	294	cyclin-dependent kinase A; Provisional	99.98
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.98
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.98
PHA02882	294	putative serine/threonine kinase; Provisional	99.98
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.98
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.98
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.98
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.98
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.97
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.97
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.97
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.97
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.97
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.97
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.97
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.97
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.97
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.97
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.97
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.97
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.97
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.97
KOG0610	459	consensus Putative serine/threonine protein kinase	99.97
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.97
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.97
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.97
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.97
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.97
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.97
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.97
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.97
PHA03210	501	serine/threonine kinase US3; Provisional	99.97
KOG0586	596	consensus Serine/threonine protein kinase [General	99.97
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.97
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.97
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.97
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.97
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.97
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.97
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.97
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.97
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.97
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.97
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.96
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.96
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.96
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.96
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.96
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.96
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.96
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.96
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.96
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.96
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.96
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.95
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.95
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.95
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.95
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.95
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.95
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.95
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.95
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.94
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.94
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.94
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.93
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.93
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.93
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.92
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.92
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.92
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.92
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.91
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.91
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.89
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.89
PLN00181	793	protein SPA1-RELATED; Provisional	99.89
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.89
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.88
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.87
KOG1152	772	consensus Signal transduction serine/threonine kin	99.86
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.86
PRK09188	365	serine/threonine protein kinase; Provisional	99.83
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.81
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.81
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.8
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.78
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.78
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.77
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.74
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.74
PRK10345	210	hypothetical protein; Provisional	99.73
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.71
PRK12274	218	serine/threonine protein kinase; Provisional	99.71
PRK14879	211	serine/threonine protein kinase; Provisional	99.7
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.69
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.68
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.68
smart00090	237	RIO RIO-like kinase.	99.67
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.67
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.66
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.64
PLN03150	623	hypothetical protein; Provisional	99.58
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.58
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.56
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.54
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.52
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.47
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.44
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.38
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.37
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.31
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.24
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.23
PLN03150	623	hypothetical protein; Provisional	99.23
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.22
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.2
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.15
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.03
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.03
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.0
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.96
KOG3087	229	consensus Serine/threonine protein kinase [General	98.95
KOG1243	690	consensus Protein kinase [General function predict	98.91
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.85
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.84
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.83
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.83
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.77
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.7
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.69
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.65
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.65
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.55
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.53
PRK09902	216	hypothetical protein; Provisional	98.51
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.51
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.48
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.46
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.46
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.43
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.42
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.41
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.41
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.4
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.4
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.3
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	98.29
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.27
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.23
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.21
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.2
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.16
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.06
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.04
COG4248	637	Uncharacterized protein with protein kinase and he	98.0
KOG2137	700	consensus Protein kinase [Signal transduction mech	97.95
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.91
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.87
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.8
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.78
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.78
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.77
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.71
PLN02876	822	acyl-CoA dehydrogenase	97.71
PRK10593	297	hypothetical protein; Provisional	97.68
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.66
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.66
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.63
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.57

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.9e-55  Score=508.68  Aligned_cols=531  Identities=21%  Similarity=0.322  Sum_probs=307.7

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|.++|.+|..+.+++.|+.|+|++|.++|.+|..+..+++|+.|+|++|++.|.+|..+. .++|+.|+|++
T Consensus       406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~  484 (968)
T PLN00113        406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSR  484 (968)
T ss_pred             CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcC
Confidence            56777788888877777777777777777777777777777777777777777777777666665442 35666666666


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCccccccchhh----hccccccCCCchhhhhhcccCCccccccccccccCCCC
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCY----ERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPT  158 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~~~~~~----~~~~~~n~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  158 (592)
                      |+++|.+|..+.++++|+.|++++|+++|.+|......    ...+..|.+.+..+.....+......++++|.+..  .
T Consensus       485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~  562 (968)
T PLN00113        485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG--E  562 (968)
T ss_pred             CccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc--c
Confidence            66666666666666666666666666666665422111    11233343333332222222222223333333221  1


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 007711          159 SSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQ---TPTPTPSIPIPRPSSSQSHQKSGGSSS  235 (592)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (592)
                      .|..... ...+.....+.    +...+..+.   ...+.........++   ...+.+. ..+...    ..  . ...
T Consensus       563 ~p~~l~~-l~~L~~l~ls~----N~l~~~~p~---~~~~~~~~~~~~~~n~~lc~~~~~~-~~~~c~----~~--~-~~~  626 (968)
T PLN00113        563 IPKNLGN-VESLVQVNISH----NHLHGSLPS---TGAFLAINASAVAGNIDLCGGDTTS-GLPPCK----RV--R-KTP  626 (968)
T ss_pred             CChhHhc-CcccCEEeccC----CcceeeCCC---cchhcccChhhhcCCccccCCcccc-CCCCCc----cc--c-ccc
Confidence            1100000 00011111110    000000000   000000000000000   0000000 000000    00  0 011


Q ss_pred             ccEEEEehHHHHHHHHHHH-HHHhhheeccccccCCCCCCCchhhhhhhhc-CCCCCCHHHHHHHHhhhhcccCcCCCeE
Q 007711          236 KHIAILGGVIGGAILLVAT-VGIYLCRCNKVSTVKPWATGLSGQLQKAFVT-GVPKLKRSELEAACEDFSNVIGSSPIGT  313 (592)
Q Consensus       236 ~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~el~~~~~~~~~~lG~G~~g~  313 (592)
                      ....+++++++++++++++ ++++++|+++....+.............+.. ....+..+++... .+..+.||+|+||.
T Consensus       627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ig~G~~g~  705 (968)
T PLN00113        627 SWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDILSS-LKEENVISRGKKGA  705 (968)
T ss_pred             eeeeehhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccchhhhHHHHHhh-CCcccEEccCCCee
Confidence            1222333333333333222 2233333333221111111000000000000 0112333344332 22346899999999


Q ss_pred             EEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeCCCCCchhhc
Q 007711          314 VYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI  392 (592)
Q Consensus       314 Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l  392 (592)
                      ||+|+. .++..||||.+.....         ...+|++.+++++|||||+++|+|.+.+  ..++|||||++|+|.+++
T Consensus       706 Vy~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~l~~l~HpnIv~~~~~~~~~~--~~~lv~Ey~~~g~L~~~l  774 (968)
T PLN00113        706 SYKGKSIKNGMQFVVKEINDVNS---------IPSSEIADMGKLQHPNIVKLIGLCRSEK--GAYLIHEYIEGKNLSEVL  774 (968)
T ss_pred             EEEEEECCCCcEEEEEEccCCcc---------ccHHHHHHHhhCCCCCcceEEEEEEcCC--CCEEEEeCCCCCcHHHHH
Confidence            999996 5789999998753221         1234688999999999999999998877  569999999999999998


Q ss_pred             cccCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-----hhhhcccc
Q 007711          393 HIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-----EMAATSKK  466 (592)
Q Consensus       393 ~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~-~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-----~~~~~~~~  466 (592)
                      +     .++|..+.+|+.|+|+|++|||+. .++|+|||+||+||+++.++.+++. ||........     ...+.+||
T Consensus       775 ~-----~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~~~~~~t~~y~aPE  848 (968)
T PLN00113        775 R-----NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDTKCFISSAYVAPE  848 (968)
T ss_pred             h-----cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccCCCccccccccCcc
Confidence            5     389999999999999999999954 4569999999999999999998876 6654433211     12344555


Q ss_pred             cCCCCCCCCCCcchhhHHHHHHHHhCCCcccCC---CCChHHHHHHHhcCCCCCccccCCCCC---CCCHHHHHHHHHHH
Q 007711          467 LSSAPSASLESNVYNFGVLLFEMVTGRLPYLVD---NGSLEDWAADYLSGVQPLQQFVDPTLS---SFDEEQLETLGELI  540 (592)
Q Consensus       467 ~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~  540 (592)
                      ......++.|+|||||||++|||+||+.||+..   .....+|++..... .....++|+.+.   ..+.++..++.+++
T Consensus       849 ~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  927 (968)
T PLN00113        849 TRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSD-CHLDMWIDPSIRGDVSVNQNEIVEVMNLA  927 (968)
T ss_pred             cccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCc-cchhheeCccccCCCCccHHHHHHHHHHH
Confidence            555555899999999999999999999998633   24566776654433 233444555442   23455667889999


Q ss_pred             HHhcccCCCCCCCHHHHHHHHHhhhCCCCCC
Q 007711          541 KSCVRADPEKRPTMRDIAAILREITGITPDG  571 (592)
Q Consensus       541 ~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~  571 (592)
                      .+||+.||++||+|+|+++.|+++.+..+..
T Consensus       928 ~~Cl~~~P~~RPt~~evl~~L~~~~~~~~~~  958 (968)
T PLN00113        928 LHCTATDPTARPCANDVLKTLESASRSSSSC  958 (968)
T ss_pred             HhhCcCCchhCcCHHHHHHHHHHhhcccccc
Confidence            9999999999999999999999998765543

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.2e-54  Score=438.58  Aligned_cols=275  Identities=38%  Similarity=0.654  Sum_probs=234.1

Q ss_pred             CCCCCCHHHHHHHHhhhh--cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceee
Q 007711          286 GVPKLKRSELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN  363 (592)
Q Consensus       286 ~~~~~~~~el~~~~~~~~--~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~  363 (592)
                      ....|++.|+..+|++|.  +.||+|+||.||+|.+++|..||||.+......    . .++|..|++++++++|||+|+
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~----~-~~eF~~Ei~~ls~l~H~Nlv~  135 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQ----G-EREFLNEVEILSRLRHPNLVK  135 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCc----c-hhHHHHHHHHHhcCCCcCccc
Confidence            345689999999999998  799999999999999999999999976544322    1 456999999999999999999


Q ss_pred             eeEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCC
Q 007711          364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDY  442 (592)
Q Consensus       364 l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~  442 (592)
                      |+|||.+.+. ..+||||||++|+|.++|+......++|.+|++||.|+|+||+|||+ +.|+|+|||||++|||||+++
T Consensus       136 LlGyC~e~~~-~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~  214 (361)
T KOG1187|consen  136 LLGYCLEGGE-HRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDF  214 (361)
T ss_pred             EEEEEecCCc-eEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCC
Confidence            9999998773 37999999999999999986543388999999999999999999997 567999999999999999999


Q ss_pred             ceEEecCCcchhhhh----------hhhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCC----CCChHHHHH
Q 007711          443 AAKLSDLSFWNEIAM----------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVD----NGSLEDWAA  508 (592)
Q Consensus       443 ~~ki~DfGla~~~~~----------~~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~----~~~~~~~~~  508 (592)
                      ++||+|||+|+....          +...+..|++......++|+|||||||+|+||+||+.|.+..    ...+.+|+.
T Consensus       215 ~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~  294 (361)
T KOG1187|consen  215 NAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAK  294 (361)
T ss_pred             CEEccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHH
Confidence            999999999977653          122334455655566799999999999999999999988642    245789988


Q ss_pred             HHhcCCCCCccccCCCCC--CCCH-HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          509 DYLSGVQPLQQFVDPTLS--SFDE-EQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~--~~~~-~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ..+... .+.+++|+.+.  .++. ++...+..++.+|++.+|.+||+|.||+++|+.+...
T Consensus       295 ~~~~~~-~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~~  355 (361)
T KOG1187|consen  295 PLLEEG-KLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILSL  355 (361)
T ss_pred             HHHHCc-chhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhccc
Confidence            777664 78999999975  4443 6788899999999999999999999999999776554

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-50  Score=410.21  Aligned_cols=254  Identities=28%  Similarity=0.418  Sum_probs=215.7

Q ss_pred             HHHHHHHHhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecC
Q 007711          292 RSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE  371 (592)
Q Consensus       292 ~~el~~~~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~  371 (592)
                      .+++.+....+.+.||+|.||+||.|.|++...||+|.++.....      .++|.+|+++|.+++|+|||+++|+|..+
T Consensus       200 ~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~------~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~  273 (468)
T KOG0197|consen  200 PWEIPREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMS------PEAFLREAQIMKKLRHEKLVKLYGVCTKQ  273 (468)
T ss_pred             CeeecHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEeccccC------hhHHHHHHHHHHhCcccCeEEEEEEEecC
Confidence            345555555677899999999999999988889999999865432      46899999999999999999999999988


Q ss_pred             CCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCc
Q 007711          372 EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF  451 (592)
Q Consensus       372 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGl  451 (592)
                      +  -.+||||||++|+|.++|+......+...+.+.+|.|||+|++||++++  +|||||.++||||+++..+||+|||+
T Consensus       274 ~--piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~--~IHRDLAARNiLV~~~~~vKIsDFGL  349 (468)
T KOG0197|consen  274 E--PIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKN--YIHRDLAARNILVDEDLVVKISDFGL  349 (468)
T ss_pred             C--ceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCC--ccchhhhhhheeeccCceEEEccccc
Confidence            7  4699999999999999999767788999999999999999999999999  99999999999999999999999999


Q ss_pred             chhhhhhhh----hhcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          452 WNEIAMAEM----AATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       452 a~~~~~~~~----~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      ||.......    ....|..|.+||      ++.|||||||||+||||+| |+.||  ...+..+.+....++ .     
T Consensus       350 Ar~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py--~~msn~ev~~~le~G-y-----  421 (468)
T KOG0197|consen  350 ARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPY--PGMSNEEVLELLERG-Y-----  421 (468)
T ss_pred             ccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCC--CCCCHHHHHHHHhcc-C-----
Confidence            995443222    122345566666      7999999999999999999 99999  556666666555444 2     


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                          ....|+.|+.+++++|..||+.+|++||||+.+...|+++...
T Consensus       422 ----Rlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~~  464 (468)
T KOG0197|consen  422 ----RLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFTS  464 (468)
T ss_pred             ----cCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhhc
Confidence                2234677889999999999999999999999999999998754

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-49  Score=418.36  Aligned_cols=264  Identities=24%  Similarity=0.393  Sum_probs=215.6

Q ss_pred             CHHHHHHHHhhhhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeee
Q 007711          291 KRSELEAACEDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL  364 (592)
Q Consensus       291 ~~~el~~~~~~~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l  364 (592)
                      ...|+.+....+.+.||+|+||+||+|+..      +...||||.++...    ....+++|++|++++++++|||||+|
T Consensus       479 ~~~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a----~~~~~~dF~REaeLla~l~H~nIVrL  554 (774)
T KOG1026|consen  479 KVLEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKA----ENQARQDFRREAELLAELQHPNIVRL  554 (774)
T ss_pred             ceeEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccc----cHHHHHHHHHHHHHHHhccCCCeEEE
Confidence            344555555567788999999999999853      34578888875432    23478899999999999999999999


Q ss_pred             eEEEecCCCcceEEEEeeCCCCCchhhcccc--------CCCC----CCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcC
Q 007711          365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK--------ESEH----LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN  432 (592)
Q Consensus       365 ~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~--------~~~~----l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk  432 (592)
                      +|+|.+++|  .++|+|||..|||.++|+..        .+..    ++-.+.+.||.|||.|++||.+..  +|||||.
T Consensus       555 lGVC~~~~P--~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~--FVHRDLA  630 (774)
T KOG1026|consen  555 LGVCREGDP--LCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHH--FVHRDLA  630 (774)
T ss_pred             EEEEccCCe--eEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCc--ccccchh
Confidence            999999985  49999999999999999743        1223    888999999999999999998888  9999999


Q ss_pred             CCCeEEcCCCceEEecCCcchhhhhhhhhhcc-----cccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCC
Q 007711          433 SSAVHLTEDYAAKLSDLSFWNEIAMAEMAATS-----KKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDN  500 (592)
Q Consensus       433 ~~NiLl~~~~~~ki~DfGla~~~~~~~~~~~~-----~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~  500 (592)
                      +|||||+++..+||+|||++|......++...     +..|+.||      +|++||||||||||||++| |+.||.+  
T Consensus       631 TRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~g--  708 (774)
T KOG1026|consen  631 TRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYG--  708 (774)
T ss_pred             hhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccc--
Confidence            99999999999999999999988765544322     23455554      8999999999999999999 9999943  


Q ss_pred             CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCCCC
Q 007711          501 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIP  574 (592)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~~p  574 (592)
                      -+-.+.+.....          ..+...++.|+.++++||..||+.+|++||+|+||...|+.....++.....
T Consensus       709 lSn~EVIe~i~~----------g~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~s~~~~~~  772 (774)
T KOG1026|consen  709 LSNQEVIECIRA----------GQLLSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQASPKYSSL  772 (774)
T ss_pred             cchHHHHHHHHc----------CCcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhcCcccccc
Confidence            233333333322          2334568889999999999999999999999999999999999888776543

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-47  Score=387.47  Aligned_cols=249  Identities=28%  Similarity=0.455  Sum_probs=201.4

Q ss_pred             hcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          303 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      .+.||+|+||+||+|.|++...||||++.......   ...++|.+|+.+|.+++|||||+++|+|.+... ..++||||
T Consensus        46 ~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~---~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~-~~~iVtEy  121 (362)
T KOG0192|consen   46 EEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDD---ESRKAFRREASLLSRLRHPNIVQFYGACTSPPG-SLCIVTEY  121 (362)
T ss_pred             hhhcccCCceeEEEEEeCCceeEEEEEecchhcCh---HHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC-ceEEEEEe
Confidence            45599999999999999655559999987554333   227799999999999999999999999987642 36899999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC-ceEEecCCcchhhhhh--h
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAMA--E  459 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~-~~ki~DfGla~~~~~~--~  459 (592)
                      |++|+|.++++......++|..+++||.|||+||.|||+++| |||||||+.|||++.++ ++||+|||+++.....  .
T Consensus       122 ~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~-iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~  200 (362)
T KOG0192|consen  122 MPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGP-IIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTS  200 (362)
T ss_pred             CCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCC-eeecccChhhEEEcCCCCEEEECCCccceeecccccc
Confidence            999999999986556789999999999999999999999987 99999999999999998 9999999999876532  1


Q ss_pred             -------hhhcccccCC--CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 -------MAATSKKLSS--APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 -------~~~~~~~~~~--~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                             ..+.+||...  ...++.|+|||||||++|||+||+.||.  +....+.+.....+..         ....+.
T Consensus       201 ~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~--~~~~~~~~~~v~~~~~---------Rp~~p~  269 (362)
T KOG0192|consen  201 MTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFE--DLAPVQVASAVVVGGL---------RPPIPK  269 (362)
T ss_pred             ccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCC--CCCHHHHHHHHHhcCC---------CCCCCc
Confidence                   1233444444  3458899999999999999999999994  3333343333332211         112334


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      .++..+..+|.+||+.||..||+|.+++..|+.+...
T Consensus       270 ~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~  306 (362)
T KOG0192|consen  270 ECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSH  306 (362)
T ss_pred             cCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHh
Confidence            4667899999999999999999999999999998764

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-47  Score=398.18  Aligned_cols=253  Identities=21%  Similarity=0.378  Sum_probs=210.7

Q ss_pred             HHHHHHhhhhcccCcCCCeEEEEEEeC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEe
Q 007711          294 ELEAACEDFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCE  369 (592)
Q Consensus       294 el~~~~~~~~~~lG~G~~g~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~  369 (592)
                      ||..+...+.++||.|.||+||+|+++    ....||||.++...    +...+.+|+.|+.+|.+++||||++|.|+.+
T Consensus       625 EId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gy----tekqrrdFL~EAsIMGQFdHPNIIrLEGVVT  700 (996)
T KOG0196|consen  625 EIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGY----TEKQRRDFLSEASIMGQFDHPNIIRLEGVVT  700 (996)
T ss_pred             hcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCc----cHHHHhhhhhhhhhcccCCCCcEEEEEEEEe
Confidence            455555556689999999999999974    34678999887543    3557889999999999999999999999999


Q ss_pred             cCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecC
Q 007711          370 EEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  449 (592)
Q Consensus       370 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~Df  449 (592)
                      ..+|  .|||+|||+||+|+.+|+.+. .++.|.+...+.+|||.|+.||.+.+  +|||||.++|||++.+..+||+||
T Consensus       701 ks~P--vMIiTEyMENGsLDsFLR~~D-GqftviQLVgMLrGIAsGMkYLsdm~--YVHRDLAARNILVNsnLvCKVsDF  775 (996)
T KOG0196|consen  701 KSKP--VMIITEYMENGSLDSFLRQND-GQFTVIQLVGMLRGIASGMKYLSDMN--YVHRDLAARNILVNSNLVCKVSDF  775 (996)
T ss_pred             cCce--eEEEhhhhhCCcHHHHHhhcC-CceEeehHHHHHHHHHHHhHHHhhcC--chhhhhhhhheeeccceEEEeccc
Confidence            9885  599999999999999999765 45999999999999999999999999  999999999999999999999999


Q ss_pred             Ccchhhhhhhh-hhcc-----cccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCC
Q 007711          450 SFWNEIAMAEM-AATS-----KKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP  516 (592)
Q Consensus       450 Gla~~~~~~~~-~~~~-----~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~  516 (592)
                      |++|.+..... ++++     |..|.+||      +|.+||||||||||||.++ |.+||.  +.+-.+.+..+..+   
T Consensus       776 GLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYW--dmSNQdVIkaIe~g---  850 (996)
T KOG0196|consen  776 GLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW--DMSNQDVIKAIEQG---  850 (996)
T ss_pred             cceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCccc--ccchHHHHHHHHhc---
Confidence            99998854432 2221     24566666      6899999999999999998 999994  33444444443333   


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                             ...+.|.+|+..+++||.+||++|-.+||.|.+|+..|+++...
T Consensus       851 -------yRLPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrn  894 (996)
T KOG0196|consen  851 -------YRLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRN  894 (996)
T ss_pred             -------cCCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcC
Confidence                   22233667889999999999999999999999999999998765

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-43  Score=343.43  Aligned_cols=249  Identities=22%  Similarity=0.304  Sum_probs=197.3

Q ss_pred             CCHHHHHHHHhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEE
Q 007711          290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFC  368 (592)
Q Consensus       290 ~~~~el~~~~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~  368 (592)
                      ++..|++.     .+.||+|..|+|||++++ +++-+|+|.+....    .....+++.+|++++++++||+||+++|.|
T Consensus        76 i~~~dle~-----~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~----~~~~~~Qi~rEl~il~~~~spyIV~~ygaF  146 (364)
T KOG0581|consen   76 ISLSDLER-----LGVLGSGNGGTVYKVRHKPTGKIYALKVILLNI----DPALQKQILRELEILRSCQSPYIVGFYGAF  146 (364)
T ss_pred             cCHHHhhh-----hhhcccCCCcEEEEEEEcCCCeEEEEEeecccC----CHHHHHHHHHHHHHHhhCCCCCeeeEeEEE
Confidence            44556654     467999999999999975 67888999884332    245678899999999999999999999999


Q ss_pred             ecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCCceEEe
Q 007711          369 EEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLS  447 (592)
Q Consensus       369 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~~~ki~  447 (592)
                      +.... ...|+||||.+|||++++..  .+.++....-+||.+|.+||.|||+ .+  ||||||||+|||++.++++||+
T Consensus       147 ~~~~~-~isI~mEYMDgGSLd~~~k~--~g~i~E~~L~~ia~~VL~GL~YLh~~~~--IIHRDIKPsNlLvNskGeVKic  221 (364)
T KOG0581|consen  147 YSNGE-EISICMEYMDGGSLDDILKR--VGRIPEPVLGKIARAVLRGLSYLHEERK--IIHRDIKPSNLLVNSKGEVKIC  221 (364)
T ss_pred             EeCCc-eEEeehhhcCCCCHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHhhccC--eeeccCCHHHeeeccCCCEEec
Confidence            98773 47999999999999998863  3678999999999999999999995 66  9999999999999999999999


Q ss_pred             cCCcchhhhhhh-------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          448 DLSFWNEIAMAE-------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       448 DfGla~~~~~~~-------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      |||.++.+...-       .++.+||......|+.++||||||++++|+.+|+.||.........|+.-.       ..+
T Consensus       222 DFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll-------~~I  294 (364)
T KOG0581|consen  222 DFGVSGILVNSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELL-------CAI  294 (364)
T ss_pred             cccccHHhhhhhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHH-------HHH
Confidence            999999876441       233334444444589999999999999999999999976533222232211       122


Q ss_pred             cCCCCCCCCHH-HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 VDPTLSSFDEE-QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ~~~~~~~~~~~-~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ++...+..+.. ++.++++++..|+++||.+||+++|+++
T Consensus       295 v~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~  334 (364)
T KOG0581|consen  295 VDEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQ  334 (364)
T ss_pred             hcCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            22222233443 6778999999999999999999999875

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-44  Score=364.95  Aligned_cols=259  Identities=23%  Similarity=0.361  Sum_probs=214.8

Q ss_pred             CCCCCHHHHHHHHhhhhcccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeee
Q 007711          287 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI  365 (592)
Q Consensus       287 ~~~~~~~el~~~~~~~~~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~  365 (592)
                      .|..+.+|+++......++||-|.||.||.|.|+. .-.||||.++...      -..++|++|+.+|+.++|||+|+|+
T Consensus       256 SPn~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDt------MeveEFLkEAAvMKeikHpNLVqLL  329 (1157)
T KOG4278|consen  256 SPNADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT------MEVEEFLKEAAVMKEIKHPNLVQLL  329 (1157)
T ss_pred             cCCcchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcc------hhHHHHHHHHHHHHhhcCccHHHHh
Confidence            34556777777666667999999999999999965 5678898875432      2357899999999999999999999


Q ss_pred             EEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceE
Q 007711          366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAK  445 (592)
Q Consensus       366 g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~k  445 (592)
                      |+|+...++  |||+|||.+|+|.+||++-....+..-..+.+|.||+.|++||..++  +|||||.++|||+.++..+|
T Consensus       330 GVCT~EpPF--YIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkkn--FIHRDLAARNCLVgEnhiVK  405 (1157)
T KOG4278|consen  330 GVCTHEPPF--YIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHIVK  405 (1157)
T ss_pred             hhhccCCCe--EEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhh--hhhhhhhhhhccccccceEE
Confidence            999998866  89999999999999999766667777888999999999999999888  99999999999999999999


Q ss_pred             EecCCcchhhhhhhhhhc----ccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCC
Q 007711          446 LSDLSFWNEIAMAEMAAT----SKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV  514 (592)
Q Consensus       446 i~DfGla~~~~~~~~~~~----~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~  514 (592)
                      |+|||++|.+........    .+.-|.+|+      ++.|+|||+|||+||||.| |..||.  +.++. .++..+...
T Consensus       406 vADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYP--GidlS-qVY~LLEkg  482 (1157)
T KOG4278|consen  406 VADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYP--GIDLS-QVYGLLEKG  482 (1157)
T ss_pred             eeccchhhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCC--CccHH-HHHHHHhcc
Confidence            999999999875544322    234566666      6889999999999999999 999994  33333 334444332


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          515 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ..         ++.++.|+..+++||+.||+..|.+||+|.|+.+.++.+...
T Consensus       483 yR---------M~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~~  526 (1157)
T KOG4278|consen  483 YR---------MDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFSS  526 (1157)
T ss_pred             cc---------ccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhcc
Confidence            22         234778889999999999999999999999999999987644

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-44  Score=391.70  Aligned_cols=252  Identities=27%  Similarity=0.405  Sum_probs=204.9

Q ss_pred             HHHhhhhcccCcCCCeEEEEEEeCC--Cc----EEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEec
Q 007711          297 AACEDFSNVIGSSPIGTVYKGTLSN--GV----EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE  370 (592)
Q Consensus       297 ~~~~~~~~~lG~G~~g~Vy~g~~~~--~~----~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~  370 (592)
                      .....+.+.||+|+||.||+|.+.+  |.    .||||.+....    ......+|.+|..+|++++|||||+++|+|.+
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~----~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~  766 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLS----SEQEVSDFLKEALLMSKFDHPNIVSLIGVCLD  766 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccC----CHHHHHHHHHHHHHHhcCCCcceeeEEEeecC
Confidence            3444567899999999999999743  33    36666664332    24567899999999999999999999999999


Q ss_pred             CCCcceEEEEeeCCCCCchhhcccc-----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceE
Q 007711          371 EEPFTRMMVFEYAPNGTLFEHIHIK-----ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAK  445 (592)
Q Consensus       371 ~~~~~~~lv~Ey~~~gsL~~~l~~~-----~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~k  445 (592)
                      ..  ..+|++|||++|+|..+|+..     ....+.....+.+|.|||+|+.||++++  +|||||.+|||||++...+|
T Consensus       767 ~~--~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~--fvHRDLAaRNCLL~~~r~VK  842 (1025)
T KOG1095|consen  767 SG--PPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKH--FVHRDLAARNCLLDERRVVK  842 (1025)
T ss_pred             CC--CcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCC--CcCcchhhhheeecccCcEE
Confidence            77  459999999999999999864     2456889999999999999999999999  99999999999999999999


Q ss_pred             EecCCcchhhhhhhhhh-----cccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcC
Q 007711          446 LSDLSFWNEIAMAEMAA-----TSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG  513 (592)
Q Consensus       446 i~DfGla~~~~~~~~~~-----~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~  513 (592)
                      |+|||+||.+....++.     .-+..|++||      +|.|+|||||||+|||++| |..||  .+.+-.+....++.+
T Consensus       843 IaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY--~~~~n~~v~~~~~~g  920 (1025)
T KOG1095|consen  843 IADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPY--PSRSNFEVLLDVLEG  920 (1025)
T ss_pred             EcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCC--CCcchHHHHHHHHhC
Confidence            99999999664433321     2234456665      7999999999999999999 99999  444444544444544


Q ss_pred             CCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      . .+         +.+..|++.++++|..||+.+|++||+|..+++.++.+....
T Consensus       921 g-RL---------~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~~  965 (1025)
T KOG1095|consen  921 G-RL---------DPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISNAA  965 (1025)
T ss_pred             C-cc---------CCCCCCChHHHHHHHHHccCChhhCccHHHHHhhhhhhhhhh
Confidence            2 11         236678889999999999999999999999999999987653

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=7.6e-44  Score=362.14  Aligned_cols=275  Identities=25%  Similarity=0.424  Sum_probs=212.3

Q ss_pred             HHHHHHHHhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecC
Q 007711          292 RSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE  371 (592)
Q Consensus       292 ~~el~~~~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~  371 (592)
                      .+||......+...||+|.||+||+|+|.+  .||||++.+....   ....+.|+.|+..+++-||.||+-+.|||...
T Consensus       386 ~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt---~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p  460 (678)
T KOG0193|consen  386 EWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPT---PEQLQAFKNEVAVLKKTRHENILLFMGACMNP  460 (678)
T ss_pred             ccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCC---HHHHHHHHHHHHHHhhcchhhheeeehhhcCC
Confidence            344544444567899999999999999964  7899999765433   45678999999999999999999999999987


Q ss_pred             CCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCc
Q 007711          372 EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF  451 (592)
Q Consensus       372 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGl  451 (592)
                      .  . .||+.+|++-+|+.++|..+ ..|+..+.+.||.|||+|+.|||.++  |||||||+.||++.+++.|||+|||+
T Consensus       461 ~--~-AIiTqwCeGsSLY~hlHv~e-tkfdm~~~idIAqQiaqGM~YLHAK~--IIHrDLKSnNIFl~~~~kVkIgDFGL  534 (678)
T KOG0193|consen  461 P--L-AIITQWCEGSSLYTHLHVQE-TKFDMNTTIDIAQQIAQGMDYLHAKN--IIHRDLKSNNIFLHEDLKVKIGDFGL  534 (678)
T ss_pred             c--e-eeeehhccCchhhhhccchh-hhhhHHHHHHHHHHHHHhhhhhhhhh--hhhhhccccceEEccCCcEEEecccc
Confidence            6  3 89999999999999999654 56889999999999999999999999  99999999999999999999999999


Q ss_pred             chhhhhhh--hhh---cccccCCCCC---------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC
Q 007711          452 WNEIAMAE--MAA---TSKKLSSAPS---------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL  517 (592)
Q Consensus       452 a~~~~~~~--~~~---~~~~~~~~~~---------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~  517 (592)
                      +..-....  ...   ..-..|++||         |+..+||||||+|+|||+||..||.....+  +.    +-...  
T Consensus       535 atvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~d--qI----ifmVG--  606 (678)
T KOG0193|consen  535 ATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRD--QI----IFMVG--  606 (678)
T ss_pred             eeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChh--he----EEEec--
Confidence            86543211  000   0112344443         799999999999999999999999632221  11    10000  


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC-CCCCCCCccCcccHHHHH
Q 007711          518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI-TPDGAIPKLSPLWWAEIE  585 (592)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~-~~~~~~p~~~~~~~~~~~  585 (592)
                      .....+........|+.++.+|+..||..++++||.|.+|+..|++++.. ..-...|.-....|+..|
T Consensus       607 rG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~~~pki~RS~S~P~~~~~~~~  675 (678)
T KOG0193|consen  607 RGYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLPSLPKINRSASEPVLLRSSAE  675 (678)
T ss_pred             ccccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhhcccccccCcCccchhhhhhh
Confidence            11112233334567788999999999999999999999999999999874 333555555555665544

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=7e-43  Score=352.18  Aligned_cols=258  Identities=23%  Similarity=0.350  Sum_probs=206.8

Q ss_pred             HHHHHHHhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC
Q 007711          293 SELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  372 (592)
Q Consensus       293 ~el~~~~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  372 (592)
                      .|+.+..--|.++||+|.||+|..+....+..||||+++....    .+.+.+|.+|+++|.+++|||||+|+|+|..++
T Consensus       533 ~EfPRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~----~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~De  608 (807)
T KOG1094|consen  533 VEFPRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDAT----KNARNDFLKEIKILSRLKHPNIVELLGVCVQDD  608 (807)
T ss_pred             hhcchhheehhhhhcCcccceeEEEEecCceEEEEeecCcccc----hhHHHHHHHHHHHHhccCCCCeeEEEeeeecCC
Confidence            3555555567799999999999999998889999999875543    345789999999999999999999999999998


Q ss_pred             CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcc
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  452 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla  452 (592)
                      |  .++|+|||++|+|..++.......+.-....+||.|||.|++||.+++  +||||+.++|||+|.++++||+|||++
T Consensus       609 P--icmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~n--fVHrd~a~rNcLv~~e~~iKiadfgms  684 (807)
T KOG1094|consen  609 P--LCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLN--FVHRDLATRNCLVDGEFTIKIADFGMS  684 (807)
T ss_pred             c--hHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhc--hhhccccccceeecCcccEEecCcccc
Confidence            5  489999999999999997654444556677889999999999999999  999999999999999999999999999


Q ss_pred             hhhhhhhhhhcc-----cccCCCCC------CCCCCcchhhHHHHHHHHh--CCCcccCCC-CChHHHHHHHhcCCCCCc
Q 007711          453 NEIAMAEMAATS-----KKLSSAPS------ASLESNVYNFGVLLFEMVT--GRLPYLVDN-GSLEDWAADYLSGVQPLQ  518 (592)
Q Consensus       453 ~~~~~~~~~~~~-----~~~~~~~~------~s~ksDVwSfGvvl~El~t--G~~P~~~~~-~~~~~~~~~~~~~~~~~~  518 (592)
                      |.+..+..+...     +..|+++|      +|++||||+|||++||+++  ...||.... ....+-...++.+...  
T Consensus       685 R~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~--  762 (807)
T KOG1094|consen  685 RNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGR--  762 (807)
T ss_pred             cccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCc--
Confidence            977655433222     34455554      7999999999999999987  889995321 2222222223322211  


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       519 ~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                          ......|..|+..++++|.+||..|-++||+|+++...|++.
T Consensus       763 ----~~~l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  763 ----QVVLSRPPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             ----ceeccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence                112234666778999999999999999999999999998875

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-42  Score=357.00  Aligned_cols=259  Identities=25%  Similarity=0.368  Sum_probs=202.5

Q ss_pred             HHHHHHHhhhhcccCcCCCeEEEEEEeCC--C--cE-EEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEE
Q 007711          293 SELEAACEDFSNVIGSSPIGTVYKGTLSN--G--VE-IAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGF  367 (592)
Q Consensus       293 ~el~~~~~~~~~~lG~G~~g~Vy~g~~~~--~--~~-vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~  367 (592)
                      +|+......+.++||+|+||.||+|++..  +  .. ||||..+..  .........+|.+|+++|++++|||||+++|+
T Consensus       152 Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~--~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGV  229 (474)
T KOG0194|consen  152 WELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGS--SELTKEQIKEFMKEARVMRQLNHPNVVRFYGV  229 (474)
T ss_pred             cEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeeccc--ccccHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence            34444444456899999999999999743  2  22 777776542  12335678899999999999999999999999


Q ss_pred             EecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEe
Q 007711          368 CEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS  447 (592)
Q Consensus       368 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~  447 (592)
                      +....|.  |||||+|++|+|.++|+... ..++..++++++.+.|.||+|||+++  ++||||.+||||++.++.+||+
T Consensus       230 a~~~~Pl--~ivmEl~~gGsL~~~L~k~~-~~v~~~ek~~~~~~AA~Gl~YLh~k~--~IHRDIAARNcL~~~~~~vKIS  304 (474)
T KOG0194|consen  230 AVLEEPL--MLVMELCNGGSLDDYLKKNK-KSLPTLEKLRFCYDAARGLEYLHSKN--CIHRDIAARNCLYSKKGVVKIS  304 (474)
T ss_pred             EcCCCcc--EEEEEecCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHhHHHHHHHCC--CcchhHhHHHheecCCCeEEeC
Confidence            9998865  99999999999999997543 37999999999999999999999999  9999999999999999999999


Q ss_pred             cCCcchhhhh---hh------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCC
Q 007711          448 DLSFWNEIAM---AE------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL  517 (592)
Q Consensus       448 DfGla~~~~~---~~------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~  517 (592)
                      |||+++....   ..      ..+.+||......++.++|||||||++||+++ |..||.  +....+........... 
T Consensus       305 DFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~--g~~~~~v~~kI~~~~~r-  381 (474)
T KOG0194|consen  305 DFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYP--GMKNYEVKAKIVKNGYR-  381 (474)
T ss_pred             ccccccCCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCC--CCCHHHHHHHHHhcCcc-
Confidence            9999886531   11      12223333333348999999999999999999 899994  33344443333232211 


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                              ...+...+..+..++.+||..+|++||+|.++.+.|+.+.....
T Consensus       382 --------~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~  425 (474)
T KOG0194|consen  382 --------MPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKE  425 (474)
T ss_pred             --------CCCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhccc
Confidence                    12233456778899999999999999999999999999976643

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=1e-41  Score=345.62  Aligned_cols=256  Identities=21%  Similarity=0.343  Sum_probs=209.5

Q ss_pred             CCHHHHHHHHhhhhcccCcCCCeEEEEEEeC---CCcE--EEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeee
Q 007711          290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLS---NGVE--IAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL  364 (592)
Q Consensus       290 ~~~~el~~~~~~~~~~lG~G~~g~Vy~g~~~---~~~~--vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l  364 (592)
                      ....||.++...+.+.||.|.||.||+|.+.   .|..  ||||..+..    ......+.|.+|+.+|++++|||||+|
T Consensus       381 ~rnyel~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d----~t~d~tekflqEa~iMrnfdHphIikL  456 (974)
T KOG4257|consen  381 VRNYELRRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTD----CTPDDTEKFLQEASIMRNFDHPHIIKL  456 (974)
T ss_pred             CCcceeehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccC----CChhhHHHHHHHHHHHHhCCCcchhhe
Confidence            3344677777777899999999999999963   3444  455544332    233457889999999999999999999


Q ss_pred             eEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCce
Q 007711          365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAA  444 (592)
Q Consensus       365 ~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~  444 (592)
                      +|+|.+..   .+||||.++.|.|.++|+. ++..++......++.|++.+|+|||+.+  +|||||.++|||+.....+
T Consensus       457 IGv~~e~P---~WivmEL~~~GELr~yLq~-nk~sL~l~tL~ly~~Qi~talaYLeSkr--fVHRDIAaRNiLVsSp~CV  530 (974)
T KOG4257|consen  457 IGVCVEQP---MWIVMELAPLGELREYLQQ-NKDSLPLRTLTLYCYQICTALAYLESKR--FVHRDIAARNILVSSPQCV  530 (974)
T ss_pred             eeeeeccc---eeEEEecccchhHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHhhc--hhhhhhhhhheeecCccee
Confidence            99998754   5899999999999999974 4567888899999999999999999999  9999999999999999999


Q ss_pred             EEecCCcchhhhhhhhhhcc----cccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcC
Q 007711          445 KLSDLSFWNEIAMAEMAATS----KKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG  513 (592)
Q Consensus       445 ki~DfGla~~~~~~~~~~~~----~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~  513 (592)
                      |++|||++|.+.....+..+    +.-|++|+      +|.+||||-|||.+||++. |..||.+-            ..
T Consensus       531 KLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgv------------kN  598 (974)
T KOG4257|consen  531 KLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGV------------KN  598 (974)
T ss_pred             eecccchhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccc------------cc
Confidence            99999999988765543332    34566666      7999999999999999998 99999421            12


Q ss_pred             CCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      .+.+..+-.....+.++.|+..++.+|.+||+.||.+||+|.|+...|.+++..
T Consensus       599 sDVI~~iEnGeRlP~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~qe  652 (974)
T KOG4257|consen  599 SDVIGHIENGERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQE  652 (974)
T ss_pred             cceEEEecCCCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHHH
Confidence            223334444445567889999999999999999999999999999999999873

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-40  Score=321.80  Aligned_cols=236  Identities=25%  Similarity=0.399  Sum_probs=185.3

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|+||+||+|+. +++.+||||.+..+..   .....+....|+.+|++++|||||+|+.++..++  ..+||||
T Consensus        15 ~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l---~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~--~i~lVME   89 (429)
T KOG0595|consen   15 SREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKL---NKKLVELLLSEIKILKELKHPNIVRLLDCIEDDD--FIYLVME   89 (429)
T ss_pred             hhhccCcceEEEEEeEeccCCceEEeeeehhhcc---CHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCC--eEEEEEE
Confidence            45699999999999996 4688999999876542   2456677889999999999999999999999988  7899999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC------CceEEecCCcchhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED------YAAKLSDLSFWNEI  455 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~------~~~ki~DfGla~~~  455 (592)
                      ||.+|+|.++++..  ..++......++.|+|.|+++||+++  ||||||||.||||+..      -.+||+|||+||.+
T Consensus        90 yC~gGDLs~yi~~~--~~l~e~t~r~Fm~QLA~alq~L~~~~--IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L  165 (429)
T KOG0595|consen   90 YCNGGDLSDYIRRR--GRLPEATARHFMQQLASALQFLHENN--IIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFL  165 (429)
T ss_pred             eCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCCcceEEeccCCCCCCCceEEecccchhhhC
Confidence            99999999999843  47899999999999999999999999  9999999999999865      46899999999998


Q ss_pred             hhhhhhhc--ccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          456 AMAEMAAT--SKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       456 ~~~~~~~~--~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      ....++.+  ...+||+||      |+.|+|+||.|+|+||++||+.||+  .....+....+..+.. ....       
T Consensus       166 ~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~--a~t~~eL~~~~~k~~~-~~~~-------  235 (429)
T KOG0595|consen  166 QPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFD--AETPKELLLYIKKGNE-IVPV-------  235 (429)
T ss_pred             CchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcc--ccCHHHHHHHHhcccc-ccCc-------
Confidence            76554332  234566665      8999999999999999999999994  3344454443333321 1111       


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDI  557 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev  557 (592)
                      .+......+.++...-++.+|.+|-++.+-
T Consensus       236 ~~~~~s~~~~~Ll~~ll~~~~~~~~~~~~~  265 (429)
T KOG0595|consen  236 LPAELSNPLRELLISLLQRNPKDRISFEDF  265 (429)
T ss_pred             hhhhccCchhhhhhHHHhcCccccCchHHh
Confidence            112222335567777777788888777644

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.7e-40  Score=336.34  Aligned_cols=239  Identities=18%  Similarity=0.314  Sum_probs=196.7

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +...+.||+|+|+.||+++. ..|..||+|++.......  ....+...+||++.++++|||||++++++.+.+  .+||
T Consensus        20 Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k--~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~--nVYi   95 (592)
T KOG0575|consen   20 YKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKK--PKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSN--NVYI   95 (592)
T ss_pred             eeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcC--cchHHHHHHHHHHHHhcCCCcEEeeeeEeecCC--ceEE
Confidence            34468899999999999996 889999999997654433  345778899999999999999999999999988  7899


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |.|+|++|+|.++++  ....+++.....+..||+.|+.|||+.+  |+|||||-.|+++++++++||+|||+|..+...
T Consensus        96 vLELC~~~sL~el~K--rrk~ltEpEary~l~QIv~GlkYLH~~~--IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~  171 (592)
T KOG0575|consen   96 VLELCHRGSLMELLK--RRKPLTEPEARYFLRQIVEGLKYLHSLG--IIHRDLKLGNLFLNENMNVKIGDFGLATQLEYD  171 (592)
T ss_pred             EEEecCCccHHHHHH--hcCCCCcHHHHHHHHHHHHHHHHHHhcC--ceecccchhheeecCcCcEEecccceeeeecCc
Confidence            999999999999886  4467999999999999999999999999  999999999999999999999999999988644


Q ss_pred             h---hhhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          459 E---MAATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       459 ~---~~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      .   .....+.-|.+||      .+.++||||+|||||-|++|++||+  ...+.+....+......+           |
T Consensus       172 ~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFe--tk~vkety~~Ik~~~Y~~-----------P  238 (592)
T KOG0575|consen  172 GERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFE--TKTVKETYNKIKLNEYSM-----------P  238 (592)
T ss_pred             ccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcc--cchHHHHHHHHHhcCccc-----------c
Confidence            2   1222234445555      4778999999999999999999993  344444443333322222           2


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .....++.+|+...++.+|.+|||+++|+.
T Consensus       239 ~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~  268 (592)
T KOG0575|consen  239 SHLSAEAKDLIRKLLRPNPSERPSLDEVLD  268 (592)
T ss_pred             cccCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            234457889999999999999999999985

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-40  Score=332.95  Aligned_cols=242  Identities=24%  Similarity=0.405  Sum_probs=192.1

Q ss_pred             CCCCCCHHHHHHHHhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeee
Q 007711          286 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI  365 (592)
Q Consensus       286 ~~~~~~~~el~~~~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~  365 (592)
                      ....+.+++|.+.     +-||.|+-|.||.|+++ +..||||++.-.            -..+|+-|++++|+||+.|.
T Consensus       117 e~WeiPFe~IsEL-----eWlGSGaQGAVF~Grl~-netVAVKKV~el------------kETdIKHLRkLkH~NII~Fk  178 (904)
T KOG4721|consen  117 ELWEIPFEEISEL-----EWLGSGAQGAVFLGRLH-NETVAVKKVREL------------KETDIKHLRKLKHPNIITFK  178 (904)
T ss_pred             hhccCCHHHhhhh-----hhhccCcccceeeeecc-CceehhHHHhhh------------hhhhHHHHHhccCcceeeEe
Confidence            3445556665543     34999999999999995 578999876421            12478889999999999999


Q ss_pred             EEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceE
Q 007711          366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAK  445 (592)
Q Consensus       366 g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~k  445 (592)
                      |+|++..  ..|||||||+.|-|+..|+.  ...+......++..+||.|+.|||.++  |||||||+-||||..+..+|
T Consensus       179 GVCtqsP--cyCIiMEfCa~GqL~~VLka--~~~itp~llv~Wsk~IA~GM~YLH~hK--IIHRDLKSPNiLIs~~d~VK  252 (904)
T KOG4721|consen  179 GVCTQSP--CYCIIMEFCAQGQLYEVLKA--GRPITPSLLVDWSKGIAGGMNYLHLHK--IIHRDLKSPNILISYDDVVK  252 (904)
T ss_pred             eeecCCc--eeEEeeeccccccHHHHHhc--cCccCHHHHHHHHHHhhhhhHHHHHhh--HhhhccCCCceEeeccceEE
Confidence            9999876  66999999999999999974  456778888999999999999999998  99999999999999999999


Q ss_pred             EecCCcchhhhhh--------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC
Q 007711          446 LSDLSFWNEIAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL  517 (592)
Q Consensus       446 i~DfGla~~~~~~--------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~  517 (592)
                      |+|||.++.....        ..++.+++..+...+++|+||||||||||||+||..||..-+..      .++.+..  
T Consensus       253 IsDFGTS~e~~~~STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdss------AIIwGVG--  324 (904)
T KOG4721|consen  253 ISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSS------AIIWGVG--  324 (904)
T ss_pred             eccccchHhhhhhhhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchh------eeEEecc--
Confidence            9999999877432        23444455555555799999999999999999999999422111      1122211  


Q ss_pred             ccccCCCC-CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          518 QQFVDPTL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       518 ~~~~~~~~-~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                          ...+ ...+..|++-+.-|++.||+..|..||+|++++.-|+-
T Consensus       325 ----sNsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~HldI  367 (904)
T KOG4721|consen  325 ----SNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHLDI  367 (904)
T ss_pred             ----CCcccccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHHhh
Confidence                1111 24567788889999999999999999999999988863

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=3.6e-39  Score=324.26  Aligned_cols=258  Identities=19%  Similarity=0.320  Sum_probs=197.1

Q ss_pred             CCCCCHHHHHHHHhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeE
Q 007711          287 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIG  366 (592)
Q Consensus       287 ~~~~~~~el~~~~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g  366 (592)
                      ...++.++++..   -...||+|++|.||+|.+ +|..||||.+......  .....+.|.+|+++|++++||||++++|
T Consensus        12 ~~~i~~~~i~~~---~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~~~g   85 (283)
T PHA02988         12 IKCIESDDIDKY---TSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKG--HKVLIDITENEIKNLRRIDSNNILKIYG   85 (283)
T ss_pred             ceecCHHHcCCC---CCeEEeeCCceEEEEEEE-CCEEEEEEeccccccc--cHHHHHHHHHHHHHHHhcCCCCEEEEee
Confidence            344555555321   125699999999999998 6889999988654322  1233567889999999999999999999


Q ss_pred             EEec--CCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEeeCcCCCCeEEcCCCc
Q 007711          367 FCEE--EEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYA  443 (592)
Q Consensus       367 ~~~~--~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~-~~~ivH~dLk~~NiLl~~~~~  443 (592)
                      ++.+  .+....++||||+++|+|.++++.  ...++|....+++.+++.|++|||+. +  ++||||||+|||+++++.
T Consensus        86 ~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~--~~~~~~~~~~~i~~~i~~~l~~lH~~~~--~~Hrdlkp~nill~~~~~  161 (283)
T PHA02988         86 FIIDIVDDLPRLSLILEYCTRGYLREVLDK--EKDLSFKTKLDMAIDCCKGLYNLYKYTN--KPYKNLTSVSFLVTENYK  161 (283)
T ss_pred             eEEecccCCCceEEEEEeCCCCcHHHHHhh--CCCCChhHHHHHHHHHHHHHHHHHhcCC--CCCCcCChhhEEECCCCc
Confidence            9876  332357899999999999999874  34689999999999999999999974 6  789999999999999999


Q ss_pred             eEEecCCcchhhhhhh------hhhcccccCCC--CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC
Q 007711          444 AKLSDLSFWNEIAMAE------MAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ  515 (592)
Q Consensus       444 ~ki~DfGla~~~~~~~------~~~~~~~~~~~--~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~  515 (592)
                      +||+|||+++......      ..+.+++....  ..++.++|||||||++|||+||+.||..  ....++.........
T Consensus       162 ~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~--~~~~~~~~~i~~~~~  239 (283)
T PHA02988        162 LKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFEN--LTTKEIYDLIINKNN  239 (283)
T ss_pred             EEEcccchHhhhccccccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhcCC
Confidence            9999999988643221      22333443322  4578899999999999999999999953  333444333332211


Q ss_pred             CCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          516 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      ..         ..+..++..+.+++.+||+.||++||||.|+++.|+.+-
T Consensus       240 ~~---------~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        240 SL---------KLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             CC---------CCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence            11         112234567999999999999999999999999998763

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=3.1e-39  Score=333.48  Aligned_cols=252  Identities=21%  Similarity=0.336  Sum_probs=190.0

Q ss_pred             HHhhhhcccCcCCCeEEEEEEe------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEec
Q 007711          298 ACEDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEE  370 (592)
Q Consensus       298 ~~~~~~~~lG~G~~g~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~  370 (592)
                      ....+.+.||+|+||.||+|.+      ..+..||||++.....    ....+.+.+|++++.++ +||||++++|+|..
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~   82 (338)
T cd05102           7 DRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGAT----ASEHKALMSELKILIHIGNHLNVVNLLGACTK   82 (338)
T ss_pred             hHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccc----hHHHHHHHHHHHHHHHhccCcceeeEEeEecC
Confidence            3345668899999999999974      2346799998753221    22346789999999999 89999999999876


Q ss_pred             CCCcceEEEEeeCCCCCchhhccccC------------------------------------------------------
Q 007711          371 EEPFTRMMVFEYAPNGTLFEHIHIKE------------------------------------------------------  396 (592)
Q Consensus       371 ~~~~~~~lv~Ey~~~gsL~~~l~~~~------------------------------------------------------  396 (592)
                      .+. ..++||||+++|+|.++++...                                                      
T Consensus        83 ~~~-~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (338)
T cd05102          83 PNG-PLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQ  161 (338)
T ss_pred             CCC-ceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccch
Confidence            542 4689999999999998886421                                                      


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh----------
Q 007711          397 ------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----------  460 (592)
Q Consensus       397 ------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~----------  460 (592)
                            ...+++....+++.|+++||+|||+.+  |+||||||+|||+++++.+||+|||+++.......          
T Consensus       162 ~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~  239 (338)
T cd05102         162 ETDDLWKSPLTMEDLICYSFQVARGMEFLASRK--CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLP  239 (338)
T ss_pred             hccccccCCCCHHHHHHHHHHHHHHHHHHHHCC--EECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCC
Confidence                  134788899999999999999999998  99999999999999999999999999986532111          


Q ss_pred             -hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q 007711          461 -AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE  538 (592)
Q Consensus       461 -~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  538 (592)
                       .+.+|+......++.++|||||||++|||+| |+.||...... ..... .+......         ..+..++..+.+
T Consensus       240 ~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~-~~~~~-~~~~~~~~---------~~~~~~~~~l~~  308 (338)
T cd05102         240 LKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIN-EEFCQ-RLKDGTRM---------RAPENATPEIYR  308 (338)
T ss_pred             ccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCcc-HHHHH-HHhcCCCC---------CCCCCCCHHHHH
Confidence             1222333333337899999999999999997 99999543221 12222 22111111         112234457899


Q ss_pred             HHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          539 LIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       539 l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ++.+||+.||++||++.|+++.|++++..
T Consensus       309 li~~cl~~dp~~RPs~~el~~~l~~~~~~  337 (338)
T cd05102         309 IMLACWQGDPKERPTFSALVEILGDLLQE  337 (338)
T ss_pred             HHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence            99999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-39  Score=317.56  Aligned_cols=244  Identities=19%  Similarity=0.316  Sum_probs=187.4

Q ss_pred             hhcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCch--hHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          302 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPK--NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~--~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.||+|+||.|-+|. -++|+.||||++..........  .......+|+++|++++|||||++++++...+  +.|+
T Consensus       176 i~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d--s~Ym  253 (475)
T KOG0615|consen  176 ISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD--SSYM  253 (475)
T ss_pred             eeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC--ceEE
Confidence            46889999999999998 4679999999997654333221  12233569999999999999999999999887  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC---CceEEecCCcchhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED---YAAKLSDLSFWNEI  455 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~---~~~ki~DfGla~~~  455 (592)
                      |+|||++|+|.+.+-.  ...+....-.-++.|++.|+.|||+.+  |+||||||+|||+..+   ..+||+|||+|+..
T Consensus       254 VlE~v~GGeLfd~vv~--nk~l~ed~~K~~f~Qll~avkYLH~~G--I~HRDiKPeNILl~~~~e~~llKItDFGlAK~~  329 (475)
T KOG0615|consen  254 VLEYVEGGELFDKVVA--NKYLREDLGKLLFKQLLTAVKYLHSQG--IIHRDIKPENILLSNDAEDCLLKITDFGLAKVS  329 (475)
T ss_pred             EEEEecCccHHHHHHh--ccccccchhHHHHHHHHHHHHHHHHcC--cccccCCcceEEeccCCcceEEEecccchhhcc
Confidence            9999999999998863  345666666789999999999999999  9999999999999866   78999999999987


Q ss_pred             hhhhh--hhcccccCCCCC---------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          456 AMAEM--AATSKKLSSAPS---------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       456 ~~~~~--~~~~~~~~~~~~---------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      .....  .-..+..|.+||         +..|+|+||+|||||-+++|..||..+.+.. .....+.++...+..     
T Consensus       330 g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~-sl~eQI~~G~y~f~p-----  403 (475)
T KOG0615|consen  330 GEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDP-SLKEQILKGRYAFGP-----  403 (475)
T ss_pred             ccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCc-cHHHHHhcCcccccC-----
Confidence            53321  111123334444         2458899999999999999999996544322 112233333322221     


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        ..+....++..+++.+++..||++|||+.|+++
T Consensus       404 --~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  404 --LQWDRISEEALDLINWMLVVDPENRPSADEALN  436 (475)
T ss_pred             --hhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence              223455678999999999999999999999875

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6.9e-40  Score=336.25  Aligned_cols=242  Identities=22%  Similarity=0.341  Sum_probs=194.4

Q ss_pred             hhcccCcCCCeEEEEEEeC--CC--cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          302 FSNVIGSSPIGTVYKGTLS--NG--VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~--~~--~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.++||+|+||.|++|.|.  +|  ..||||.+......    ....+|++|+..|-+++|+|+++|+|++.+.   ..+
T Consensus       114 l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~----~~mddflrEas~M~~L~H~hliRLyGvVl~q---p~m  186 (1039)
T KOG0199|consen  114 LYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLN----AIMDDFLREASHMLKLQHPHLIRLYGVVLDQ---PAM  186 (1039)
T ss_pred             HHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccc----hhHHHHHHHHHHHHhccCcceeEEeeeeccc---hhh
Confidence            4678999999999999985  34  45778877654432    2567899999999999999999999999873   358


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +|+|+++.|||.+.|+......|-......+|.|||.|+.||..++  +|||||.++|+|+...-.+||+|||+.|.+..
T Consensus       187 MV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskr--lvHRDLAARNlllasprtVKI~DFGLmRaLg~  264 (1039)
T KOG0199|consen  187 MVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKR--LVHRDLAARNLLLASPRTVKICDFGLMRALGE  264 (1039)
T ss_pred             HHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhhhhheecccceeeeecccceeccCC
Confidence            9999999999999998755667888899999999999999999998  99999999999999999999999999998875


Q ss_pred             hhhhhc------------ccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          458 AEMAAT------------SKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       458 ~~~~~~------------~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      .+..|.            ++|......++.+||||+|||++|||+| |..||-+..+  .+....          +.+..
T Consensus       265 ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g--~qIL~~----------iD~~e  332 (1039)
T KOG0199|consen  265 NEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRG--IQILKN----------IDAGE  332 (1039)
T ss_pred             CCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCH--HHHHHh----------ccccc
Confidence            544332            2233333347999999999999999999 9999954332  121111          11222


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      ....++.|++.++++|+.||+.+|++||+|.+|++.+-..
T Consensus       333 rLpRPk~csedIY~imk~cWah~paDRptFsair~~~~l~  372 (1039)
T KOG0199|consen  333 RLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIREDLVLA  372 (1039)
T ss_pred             cCCCCCCChHHHHHHHHHhccCCccccccHHHHHHhHHHH
Confidence            3345778899999999999999999999999998655443

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-40  Score=340.53  Aligned_cols=249  Identities=20%  Similarity=0.326  Sum_probs=199.7

Q ss_pred             hcccCcCCCeEEEEEEe-CCCc----EEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGV----EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~----~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      .++||+|+||+||||.| ++|.    +||+|++.....    ....++|.+|+-.|.+++|||++||+|+|....   .+
T Consensus       701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~----~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~---~q  773 (1177)
T KOG1025|consen  701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTS----PKASIELLDEALRMASLDHPNLLRLLGVCMLST---LQ  773 (1177)
T ss_pred             hceeccccceeEEeeeEecCCceecceeEEEEeeccCC----chhhHHHHHHHHHHhcCCCchHHHHhhhcccch---HH
Confidence            47899999999999996 4444    566666643322    234678999999999999999999999998764   57


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      ||++|||.|+|.++++. ....+.....+.|+.|||+||.|||+++  +|||||.++|+|+..-..+||.|||+++....
T Consensus       774 lvtq~mP~G~LlDyvr~-hr~~igsq~lLnw~~QIAkgM~YLe~qr--lVHrdLaaRNVLVksP~hvkitdfgla~ll~~  850 (1177)
T KOG1025|consen  774 LVTQLMPLGCLLDYVRE-HRDNIGSQDLLNWCYQIAKGMKYLEEQR--LVHRDLAARNVLVKSPNHVKITDFGLAKLLAP  850 (1177)
T ss_pred             HHHHhcccchHHHHHHH-hhccccHHHHHHHHHHHHHHHHHHHhcc--hhhhhhhhhheeecCCCeEEEEecchhhccCc
Confidence            99999999999999986 3456788889999999999999999988  99999999999999999999999999998865


Q ss_pred             hhhhhccc-----------ccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          458 AEMAATSK-----------KLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       458 ~~~~~~~~-----------~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ....+.++           +....+.++.++|||||||++||++| |..||+  +.+..+ +.+.+...+.+        
T Consensus       851 d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~--gi~~~e-I~dlle~geRL--------  919 (1177)
T KOG1025|consen  851 DEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYD--GIPAEE-IPDLLEKGERL--------  919 (1177)
T ss_pred             ccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccC--CCCHHH-hhHHHhccccC--------
Confidence            54433322           22345668999999999999999999 999994  333322 33333332222        


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCCC
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAI  573 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~~  573 (592)
                       ..++.|...++.+|.+||..|+..||+|+++...+.++......-..
T Consensus       920 -sqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ardpqryl~  966 (1177)
T KOG1025|consen  920 -SQPPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMARDPQRYLV  966 (1177)
T ss_pred             -CCCCCccHHHHHHHHHHhccCcccCccHHHHHHHHHHHhcCcceEee
Confidence             23556677899999999999999999999999999998877554333

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.6e-39  Score=299.52  Aligned_cols=248  Identities=23%  Similarity=0.330  Sum_probs=196.5

Q ss_pred             hhcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.++||+|.||+|||+. ..+|..+|.|.+.-..   ......+++.+|+.+|++++|||||++++.....+....+|||
T Consensus        23 Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~---md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivm   99 (375)
T KOG0591|consen   23 ILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGM---MDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVM   99 (375)
T ss_pred             HHHHHcCCcchheEEeeeccCcchhhhhhcchhh---ccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHH
Confidence            44679999999999998 6789999999887332   2245678899999999999999999999844333222368999


Q ss_pred             eeCCCCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC--eEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          381 EYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPP--IAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       381 Ey~~~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~--ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      |||..|+|...++.  ...+.++.....++..|+++||.++|..-|.  +.||||||.||+++.++.+|++|||+++.+.
T Consensus       100 E~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~  179 (375)
T KOG0591|consen  100 ELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLS  179 (375)
T ss_pred             HhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhc
Confidence            99999999988863  3567789999999999999999999995444  9999999999999999999999999999987


Q ss_pred             hhhhhh---cccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          457 MAEMAA---TSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       457 ~~~~~~---~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      ....++   ..+.+++.|+      |+.||||||+||++|||+.-+.||.+.  ...+.-..+..+          ..+.
T Consensus       180 s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~--n~~~L~~KI~qg----------d~~~  247 (375)
T KOG0591|consen  180 SKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD--NLLSLCKKIEQG----------DYPP  247 (375)
T ss_pred             chhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc--cHHHHHHHHHcC----------CCCC
Confidence            654432   3345666665      899999999999999999999999543  444444443333          1222


Q ss_pred             CC-HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          528 FD-EEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       528 ~~-~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      .+ +.-+..+.+++..|+..||+.||+.-.++..++.-
T Consensus       248 ~p~~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di~~~  285 (375)
T KOG0591|consen  248 LPDEHYSTDLRELINMCIAVDPEQRPDTVPYVQDIQSE  285 (375)
T ss_pred             CcHHHhhhHHHHHHHHHccCCcccCCCcchHHHHHHHH
Confidence            33 45567899999999999999999966666555553

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=4.2e-39  Score=319.59  Aligned_cols=240  Identities=32%  Similarity=0.503  Sum_probs=183.1

Q ss_pred             hhcccCcCCCeEEEEEEeC-----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          302 FSNVIGSSPIGTVYKGTLS-----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-----~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.+.||.|.||.||+|.+.     .+..|+||.+...    ......++|.+|++.+++++||||++++|+|...+  ..
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~----~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~--~~   76 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPS----SSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENE--PL   76 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTT----SSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSS--SE
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccc----cccccceeeeecccccccccccccccccccccccc--cc
Confidence            3578999999999999986     3567888887432    12334688999999999999999999999999666  47


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|+||+++|+|.++++......+++..+.+|+.|+++||+|||+.+  ++|+||+++||++++++.+||+|||+++...
T Consensus        77 ~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~--iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~  154 (259)
T PF07714_consen   77 FLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNN--IIHGNLSPSNILLDSNGQVKLSDFGLSRPIS  154 (259)
T ss_dssp             EEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT--EEEST-SGGGEEEETTTEEEEESTTTGEETT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence            99999999999999998765678999999999999999999999998  9999999999999999999999999988762


Q ss_pred             hhhh-----hhcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          457 MAEM-----AATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       457 ~~~~-----~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ....     ....+..+.+||      ++.++||||||+++|||+| |+.||.  +....++....... ...       
T Consensus       155 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~--~~~~~~~~~~~~~~-~~~-------  224 (259)
T PF07714_consen  155 EKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFS--DYDNEEIIEKLKQG-QRL-------  224 (259)
T ss_dssp             TSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTT--TSCHHHHHHHHHTT-EET-------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccc-ccc-------
Confidence            1111     011112233443      6889999999999999999 789983  33455544444222 111       


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL  561 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L  561 (592)
                        ..+..++..+.+++.+||+.||++||+|.++++.|
T Consensus       225 --~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  225 --PIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             --TSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             --eeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence              11223456799999999999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-38  Score=314.40  Aligned_cols=243  Identities=23%  Similarity=0.335  Sum_probs=188.6

Q ss_pred             hhcccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+.||+|+||.||++...+ |...|||.+......     ..+.+.+|+.+|++++|||||+++|.....+....+++|
T Consensus        21 ~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~-----~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~m   95 (313)
T KOG0198|consen   21 KGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSP-----TSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFM   95 (313)
T ss_pred             hhccccCccceEEEEEEecCCCcceeeeeeecccch-----hHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeee
Confidence            35789999999999999754 899999988765211     145688999999999999999999975544422368999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC-CCceEEecCCcchhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~-~~~~ki~DfGla~~~~~~-  458 (592)
                      ||+++|+|.+++..... .++......++.++++||+|||+++  ||||||||+|||++. ++.+||+|||+++..... 
T Consensus        96 Ey~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~g--~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~  172 (313)
T KOG0198|consen   96 EYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSKG--IVHCDIKPANILLDPSNGDVKLADFGLAKKLESKG  172 (313)
T ss_pred             eccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhCC--EeccCcccceEEEeCCCCeEEeccCcccccccccc
Confidence            99999999999975444 7999999999999999999999999  999999999999999 799999999998876521 


Q ss_pred             -----hhhhcccccCCCCCC-------CCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          459 -----EMAATSKKLSSAPSA-------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       459 -----~~~~~~~~~~~~~~~-------s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                           ......+..+++|++       ..++|||||||++.||+||+.||... ....++......+.         ..+
T Consensus       173 ~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~-~~~~~~~~~ig~~~---------~~P  242 (313)
T KOG0198|consen  173 TKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF-FEEAEALLLIGRED---------SLP  242 (313)
T ss_pred             ccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh-cchHHHHHHHhccC---------CCC
Confidence                 111223355666663       23899999999999999999999532 22222222222221         111


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                      .++...+....+++..|++.||++|||+.++++.--
T Consensus       243 ~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf  278 (313)
T KOG0198|consen  243 EIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEHPF  278 (313)
T ss_pred             CCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhChh
Confidence            334445567999999999999999999999987543

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.5e-38  Score=312.08  Aligned_cols=248  Identities=18%  Similarity=0.238  Sum_probs=186.8

Q ss_pred             hcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|.||.||||+ ..+|..||+|++.....+.   ....-..+||.+|++++||||++|.+..++......|+|+|
T Consensus       122 i~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~---~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFe  198 (560)
T KOG0600|consen  122 IEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKE---GFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFE  198 (560)
T ss_pred             HHHhcCcchhheeEeeecccCcEEEEEEeecccCCC---cchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEe
Confidence            3569999999999999 5789999999998766443   23344668999999999999999999998873336899999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA  461 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~~  461 (592)
                      ||++ ||..++. .....|+..+...++.|++.||+|+|+++  |.|||||.+|||||.+|.+||+|||+|+++......
T Consensus       199 YMdh-DL~GLl~-~p~vkft~~qIKc~mkQLl~Gl~~cH~~g--vlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~  274 (560)
T KOG0600|consen  199 YMDH-DLSGLLS-SPGVKFTEPQIKCYMKQLLEGLEYCHSRG--VLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSA  274 (560)
T ss_pred             cccc-hhhhhhc-CCCcccChHHHHHHHHHHHHHHHHHhhcC--eeeccccccceEEcCCCCEEeccccceeeccCCCCc
Confidence            9987 8887775 34567899999999999999999999999  999999999999999999999999999987654422


Q ss_pred             -hcc---cccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC----------CCc--
Q 007711          462 -ATS---KKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ----------PLQ--  518 (592)
Q Consensus       462 -~~~---~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~----------~~~--  518 (592)
                       ++.   +.+|++||       |+.+.|+||.||||.||++|++.|.+. .++++ ...+..-.+          .+.  
T Consensus       275 ~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~-tEveQ-l~kIfklcGSP~e~~W~~~kLP~~  352 (560)
T KOG0600|consen  275 PYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGR-TEVEQ-LHKIFKLCGSPTEDYWPVSKLPHA  352 (560)
T ss_pred             ccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCc-cHHHH-HHHHHHHhCCCChhccccccCCcc
Confidence             222   23455554       899999999999999999999988422 22221 111111000          111  


Q ss_pred             cccCCCCC---CC---CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 QFVDPTLS---SF---DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 ~~~~~~~~---~~---~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+.+...   .+   ....+....+|+...+..||.+|.|+.+++.
T Consensus       353 ~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  353 TIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             cccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence            11111110   00   0112346789999999999999999998875

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=9e-38  Score=311.34  Aligned_cols=246  Identities=21%  Similarity=0.332  Sum_probs=190.2

Q ss_pred             HHhhhhcccCcCCCeEEEEEEeC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC
Q 007711          298 ACEDFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP  373 (592)
Q Consensus       298 ~~~~~~~~lG~G~~g~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  373 (592)
                      ....+.+.||+|+||.||+|.+.    .+..+|+|.+.....    ......|.+|+.++++++||||++++|++...+ 
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-   79 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCS----DKQRRGFLAEALTLGQFDHSNIVRLEGVITRGN-   79 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCC----HHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCC-
Confidence            33456688999999999999863    356888888764321    234567999999999999999999999998776 


Q ss_pred             cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcch
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  453 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~  453 (592)
                       ..++||||+++|+|.+++... ...++|..+++++.+++.|++|||+++  ++||||||+||+++.++.+|++|||.+.
T Consensus        80 -~~~lv~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~i~~al~~lH~~~--iiH~dikp~nili~~~~~~~l~dfg~~~  155 (266)
T cd05064          80 -TMMIVTEYMSNGALDSFLRKH-EGQLVAGQLMGMLPGLASGMKYLSEMG--YVHKGLAAHKVLVNSDLVCKISGFRRLQ  155 (266)
T ss_pred             -CcEEEEEeCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EeeccccHhhEEEcCCCcEEECCCcccc
Confidence             679999999999999998643 346899999999999999999999998  9999999999999999999999999876


Q ss_pred             hhhhhhh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccC
Q 007711          454 EIAMAEM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD  522 (592)
Q Consensus       454 ~~~~~~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (592)
                      .......          .+.+++......++.++|||||||++||+++ |+.||..  ....+.......+ ..      
T Consensus       156 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~--~~~~~~~~~~~~~-~~------  226 (266)
T cd05064         156 EDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWD--MSGQDVIKAVEDG-FR------  226 (266)
T ss_pred             cccccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCc--CCHHHHHHHHHCC-CC------
Confidence            5422111          1222333233346889999999999999876 9999943  2333333322211 11      


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       523 ~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                         ...+..++..+.+++.+||+.+|++||+++++.+.|+++
T Consensus       227 ---~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         227 ---LPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             ---CCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence               011233456789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=3.9e-38  Score=295.51  Aligned_cols=245  Identities=18%  Similarity=0.251  Sum_probs=185.8

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      .++|+|+||+|||++.+ .|+.||||++......   ....+-.++|+++|++++|+|+|.|+.+|....  ..+||+||
T Consensus         8 gkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd---~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkr--klhLVFE~   82 (396)
T KOG0593|consen    8 GKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDD---PVVKKIALREIRMLKQLKHENLVNLIEVFRRKR--KLHLVFEY   82 (396)
T ss_pred             hccccCcceEEEEeccCCcccEEEEEeeccCCcc---HHHHHHHHHHHHHHHhcccchHHHHHHHHHhcc--eeEEEeee
Confidence            46999999999999965 5999999998643321   344556789999999999999999999998887  67999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh--
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM--  460 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~--  460 (592)
                      |+.--|.++-  .....++.....+++.|+++|+.|+|+.+  ++||||||+||||..++.+|++|||+||.+.....  
T Consensus        83 ~dhTvL~eLe--~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n--~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~Y  158 (396)
T KOG0593|consen   83 CDHTVLHELE--RYPNGVPSELVKKYLYQLLKAIHFCHKNN--CIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNY  158 (396)
T ss_pred             cchHHHHHHH--hccCCCCHHHHHHHHHHHHHHhhhhhhcC--eecccCChhheEEecCCcEEeccchhhHhhcCCcchh
Confidence            9875444432  24456788889999999999999999999  99999999999999999999999999999873322  


Q ss_pred             -hhcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHh--------------cCCCCCc
Q 007711          461 -AATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL--------------SGVQPLQ  518 (592)
Q Consensus       461 -~~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~--------------~~~~~~~  518 (592)
                       .+.++.++++||       |...+|||+.||++.||+||..-|.  +.+..+....+.              ....-+.
T Consensus       159 TDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~P--G~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~  236 (396)
T KOG0593|consen  159 TDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWP--GRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFH  236 (396)
T ss_pred             hhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCC--CcchHHHHHHHHHHHcccCHHHHHHhccCCcee
Confidence             244566777776       7888999999999999999998873  333333222211              1111111


Q ss_pred             cccCCCCC------CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 QFVDPTLS------SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 ~~~~~~~~------~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+.-|...      ........-+.+++..|++.||++|++-+|++.
T Consensus       237 Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~  283 (396)
T KOG0593|consen  237 GVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLH  283 (396)
T ss_pred             eeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhc
Confidence            11111111      111233456889999999999999999988864

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.1e-37  Score=317.11  Aligned_cols=250  Identities=22%  Similarity=0.333  Sum_probs=185.5

Q ss_pred             hhhhcccCcCCCeEEEEEEeCC-----------------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCcee
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSN-----------------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV  362 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~-----------------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv  362 (592)
                      ..+.+.||+|+||.||++.+++                 +..||+|.+....    ......+|.+|++++.+++||||+
T Consensus         7 ~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~niv   82 (304)
T cd05096           7 LLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDA----NKNARNDFLKEVKILSRLKDPNII   82 (304)
T ss_pred             CeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCC----CHHHHHHHHHHHHHHhhcCCCCee
Confidence            3456789999999999998643                 3368888775432    133456899999999999999999


Q ss_pred             eeeEEEecCCCcceEEEEeeCCCCCchhhccccC-----------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 007711          363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE-----------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPP  425 (592)
Q Consensus       363 ~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-----------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~  425 (592)
                      +++|++...+  ..++||||+++|+|.+++....                 ...++|....+++.|++.||+|||+.+  
T Consensus        83 ~~~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~--  158 (304)
T cd05096          83 RLLGVCVDED--PLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLN--  158 (304)
T ss_pred             EEEEEEecCC--ceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9999998876  5699999999999999875321                 134788899999999999999999998  


Q ss_pred             eEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh--C
Q 007711          426 IAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT--G  492 (592)
Q Consensus       426 ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t--G  492 (592)
                      |+||||||+|||+++++.+||+|||+++......           ..+.+++......++.++||||||+++|||++  +
T Consensus       159 ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~  238 (304)
T cd05096         159 FVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCK  238 (304)
T ss_pred             ccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccC
Confidence            9999999999999999999999999987653221           11223333333347889999999999999997  5


Q ss_pred             CCcccCCC-CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          493 RLPYLVDN-GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       493 ~~P~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      ..||.... ....+.+............      ...+..++..+.+++.+||+.||++|||+.+|++.|++
T Consensus       239 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~~  304 (304)
T cd05096         239 EQPYGELTDEQVIENAGEFFRDQGRQVY------LFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLTE  304 (304)
T ss_pred             CCCCCcCCHHHHHHHHHHHhhhcccccc------ccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHhC
Confidence            67774321 1111222221111110000      01122345679999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=1.5e-37  Score=324.82  Aligned_cols=250  Identities=22%  Similarity=0.332  Sum_probs=188.8

Q ss_pred             HHHHhhhhcccCcCCCeEEEEEEe------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEE
Q 007711          296 EAACEDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFC  368 (592)
Q Consensus       296 ~~~~~~~~~~lG~G~~g~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~  368 (592)
                      ......+.+.||+|+||.||+|++      ..+..||||++.....    ....+.+.+|++++..+ +||||++++|+|
T Consensus        33 ~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~----~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~  108 (375)
T cd05104          33 PRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAH----LTEREALMSELKVLSYLGNHINIVNLLGAC  108 (375)
T ss_pred             chHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcC----cHHHHHHHHHHHHHHHhcCCcceeeeeeee
Confidence            333445678999999999999974      2356899998753321    22346788999999999 899999999999


Q ss_pred             ecCCCcceEEEEeeCCCCCchhhccccC----------------------------------------------------
Q 007711          369 EEEEPFTRMMVFEYAPNGTLFEHIHIKE----------------------------------------------------  396 (592)
Q Consensus       369 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~----------------------------------------------------  396 (592)
                      ....  ..++|||||++|+|.++++...                                                    
T Consensus       109 ~~~~--~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  186 (375)
T cd05104         109 TVGG--PTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKR  186 (375)
T ss_pred             ccCC--cceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccc
Confidence            8877  5699999999999998885321                                                    


Q ss_pred             ---------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          397 ---------------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       397 ---------------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                                           ...++|..+.+++.+++.||+|||+.+  ++||||||+|||+++++.+||+|||+++..
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~  264 (375)
T cd05104         187 RSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKN--CIHRDLAARNILLTHGRITKICDFGLARDI  264 (375)
T ss_pred             cccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCchhhEEEECCCcEEEecCccceec
Confidence                                 124788999999999999999999998  999999999999999999999999998765


Q ss_pred             hhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          456 AMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       456 ~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      .....           .+.+++......++.++|||||||++|||+| |..||..... ..... ..+......   .  
T Consensus       265 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~-~~~~~-~~~~~~~~~---~--  337 (375)
T cd05104         265 RNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPV-DSKFY-KMIKEGYRM---L--  337 (375)
T ss_pred             cCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc-hHHHH-HHHHhCccC---C--
Confidence            32211           1223333333347889999999999999998 8899853221 11222 222211100   0  


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                          .+...+.++.+++.+||+.||++||+|.||++.|++.
T Consensus       338 ----~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~~  374 (375)
T cd05104         338 ----SPECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             ----CCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence                1112235789999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-38  Score=315.10  Aligned_cols=249  Identities=18%  Similarity=0.258  Sum_probs=194.1

Q ss_pred             hhhhcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~  377 (592)
                      +...++||.|.||.||+|+ ...|..||||..+.+... +   .+..=.+|++.|+++. |||||++..++.+.+. ..+
T Consensus        12 Y~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s-~---ee~~nLREvksL~kln~hpniikL~Evi~d~~~-~L~   86 (538)
T KOG0661|consen   12 YTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYS-W---EECMNLREVKSLRKLNPHPNIIKLKEVIRDNDR-ILY   86 (538)
T ss_pred             HHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhcc-H---HHHHHHHHHHHHHhcCCCCcchhhHHHhhccCc-eEe
Confidence            4456789999999999999 567889999987654322 1   2233467999999998 9999999999988765 679


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +|||||+. +|+++++.+ ...++......|+.||.+||+|+|.++  ++|||+||+|||+..+..+||+|||+||....
T Consensus        87 fVfE~Md~-NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~G--fFHRDlKPENiLi~~~~~iKiaDFGLARev~S  162 (538)
T KOG0661|consen   87 FVFEFMDC-NLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKHG--FFHRDLKPENILISGNDVIKIADFGLAREVRS  162 (538)
T ss_pred             eeHHhhhh-hHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhcC--cccccCChhheEecccceeEeccccccccccc
Confidence            99999965 999999866 788999999999999999999999999  99999999999999999999999999998864


Q ss_pred             hh--hhhcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCC--------------
Q 007711          458 AE--MAATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV--------------  514 (592)
Q Consensus       458 ~~--~~~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~--------------  514 (592)
                      ..  ..+.++.+|++||       |+.+.|||++|||++|+.+-+.-|.+..  ..+.+.++..-.              
T Consensus       163 kpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~s--E~Dqi~KIc~VLGtP~~~~~~eg~~L  240 (538)
T KOG0661|consen  163 KPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGAS--EIDQIYKICEVLGTPDKDSWPEGYNL  240 (538)
T ss_pred             CCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCc--HHHHHHHHHHHhCCCccccchhHHHH
Confidence            33  3456677788887       7999999999999999999888884322  222222221110              


Q ss_pred             -----CCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          515 -----QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       515 -----~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                           ..+.+...-.+...-..+..+..+++.+|++.||++|||+.|+++
T Consensus       241 a~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~  290 (538)
T KOG0661|consen  241 ASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQ  290 (538)
T ss_pred             HHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhc
Confidence                 011111111122222336678899999999999999999999876

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.7e-37  Score=286.54  Aligned_cols=247  Identities=18%  Similarity=0.288  Sum_probs=190.2

Q ss_pred             hcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.+|+|.||.||+|+ ...|+.||||+++....++   .......+||+.|++++|+||+.+++++-...  ...||+|
T Consensus         7 ~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kd---Gi~~talREIK~Lqel~h~nIi~LiD~F~~~~--~l~lVfE   81 (318)
T KOG0659|consen    7 LEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKD---GINRTALREIKLLQELKHPNIIELIDVFPHKS--NLSLVFE   81 (318)
T ss_pred             hhhhcCcceEEEEEEEecCCCcEEEEEEeecccccc---CccHHHHHHHHHHHHccCcchhhhhhhccCCC--ceEEEEE
Confidence            4679999999999999 5679999999998876654   34456789999999999999999999998877  6689999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA  461 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~~  461 (592)
                      ||+. +|+..++. ....++..+...++.++.+|++|||++.  |.||||||.|+|+++++.+||+|||+++.+......
T Consensus        82 fm~t-dLe~vIkd-~~i~l~pa~iK~y~~m~LkGl~y~H~~~--IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~  157 (318)
T KOG0659|consen   82 FMPT-DLEVVIKD-KNIILSPADIKSYMLMTLKGLAYCHSKW--ILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRI  157 (318)
T ss_pred             eccc-cHHHHhcc-cccccCHHHHHHHHHHHHHHHHHHHhhh--hhcccCCccceEEcCCCcEEeecccchhccCCCCcc
Confidence            9976 89888864 4567888999999999999999999999  999999999999999999999999999998643322


Q ss_pred             h---cccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHh----------cCCCCCcccc
Q 007711          462 A---TSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL----------SGVQPLQQFV  521 (592)
Q Consensus       462 ~---~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~----------~~~~~~~~~~  521 (592)
                      .   ..+.++++||       |+...||||.|||+.||+-|. ||...+.++++...-+.          .+...+....
T Consensus       158 ~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~-P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~  236 (318)
T KOG0659|consen  158 QTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRV-PFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYV  236 (318)
T ss_pred             cccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccC-CCCCCCchHHHHHHHHHHcCCCCcccCccccccccHH
Confidence            1   2334555555       788999999999999999865 44444445544432211          1111111111


Q ss_pred             C------CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 D------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ~------~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .      +.....-..+...+.+++..+|..||.+|+++.|+++
T Consensus       237 ~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~  280 (318)
T KOG0659|consen  237 KIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALK  280 (318)
T ss_pred             HHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhc
Confidence            0      1111111234456799999999999999999999876

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=2.5e-37  Score=323.00  Aligned_cols=253  Identities=22%  Similarity=0.342  Sum_probs=190.2

Q ss_pred             HHHHHhhhhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEE
Q 007711          295 LEAACEDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGF  367 (592)
Q Consensus       295 l~~~~~~~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~  367 (592)
                      +.....++.+.||+|+||.||+|.+.      ++..||+|.+.....    ......+.+|+++++.+ +|+||++++|+
T Consensus        35 ~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~il~~l~~h~nIv~~~~~  110 (374)
T cd05106          35 FPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAH----TDEREALMSELKILSHLGQHKNIVNLLGA  110 (374)
T ss_pred             ccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCC----HHHHHHHHHHHHHHHhhccCCceeeEeeE
Confidence            34444556789999999999998742      235799998854322    22346788999999999 89999999999


Q ss_pred             EecCCCcceEEEEeeCCCCCchhhccccC---------------------------------------------------
Q 007711          368 CEEEEPFTRMMVFEYAPNGTLFEHIHIKE---------------------------------------------------  396 (592)
Q Consensus       368 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~---------------------------------------------------  396 (592)
                      |....  ..++||||+++|+|.++++...                                                   
T Consensus       111 ~~~~~--~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (374)
T cd05106         111 CTHGG--PVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVS  188 (374)
T ss_pred             ecCCC--CeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcc
Confidence            98877  5799999999999998875321                                                   


Q ss_pred             -----------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          397 -----------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       397 -----------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                                       ...+++....+|+.|++.||+|||+++  |+||||||+|||+++++.+||+|||+++......
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g--iiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~  266 (374)
T cd05106         189 SSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKN--CIHRDVAARNVLLTDGRVAKICDFGLARDIMNDS  266 (374)
T ss_pred             ccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCC--EEeccCchheEEEeCCCeEEEeeceeeeeccCCc
Confidence                             124788899999999999999999998  9999999999999999999999999987653221


Q ss_pred             h-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          460 M-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       460 ~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      .           .+.+++......++.++|||||||++|||++ |+.||....... .. ........      .+.   
T Consensus       267 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~-~~-~~~~~~~~------~~~---  335 (374)
T cd05106         267 NYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNS-KF-YKMVKRGY------QMS---  335 (374)
T ss_pred             ceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccH-HH-HHHHHccc------Ccc---
Confidence            1           1223333333347889999999999999998 999995432211 11 11111110      000   


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      .+...+.++.+++.+||+.||++||++.++++.|+++++
T Consensus       336 ~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~~  374 (374)
T cd05106         336 RPDFAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQLG  374 (374)
T ss_pred             CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHhC
Confidence            011123578999999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-37  Score=303.15  Aligned_cols=248  Identities=19%  Similarity=0.281  Sum_probs=194.0

Q ss_pred             hhhhcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +++...||.|..++||+|+ .+.+..||||++.......    ....+++|+..|+.++||||++++..+..+.  ..|+
T Consensus        28 YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~----~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~--~LWv  101 (516)
T KOG0582|consen   28 YELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNN----DLDALRKEVQTMSLIDHPNIVTYHCSFVVDS--ELWV  101 (516)
T ss_pred             eeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhh----hHHHHHHHHHHhhhcCCCCcceEEEEEEecc--eeEE
Confidence            3456789999999999999 4678999999997655432    2567899999999999999999999888877  7899


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||.||.+||+.++++..-...++...+..|.+++.+||.|||..+  .||||+|+.|||||++|.+||+|||.+-.+...
T Consensus       102 VmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G--~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~  179 (516)
T KOG0582|consen  102 VMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNG--HIHRDVKAGNILIDSDGTVKLADFGVSASLFDS  179 (516)
T ss_pred             eehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcC--ceecccccccEEEcCCCcEEEcCceeeeeeccc
Confidence            999999999999998655566888999999999999999999999  999999999999999999999999987655332


Q ss_pred             hh-------hhcccccCCCCC--------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          459 EM-------AATSKKLSSAPS--------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       459 ~~-------~~~~~~~~~~~~--------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ..       .-....+|++||        |+.|+|||||||+..||.+|..||.  ...+.+....-+.+..+...  -.
T Consensus       180 G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~--k~pPmkvLl~tLqn~pp~~~--t~  255 (516)
T KOG0582|consen  180 GDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFS--KYPPMKVLLLTLQNDPPTLL--TS  255 (516)
T ss_pred             CceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcc--cCChHHHHHHHhcCCCCCcc--cc
Confidence            21       112235677777        6899999999999999999999993  33333333333333211110  00


Q ss_pred             CCC-CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          524 TLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       524 ~~~-~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ... +........+++++..|++.||.+|||++++++
T Consensus       256 ~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  256 GLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLK  292 (516)
T ss_pred             cCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence            000 111223357899999999999999999999876

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=1.2e-36  Score=301.39  Aligned_cols=238  Identities=22%  Similarity=0.376  Sum_probs=186.9

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ++.+.||+|+||.||++.+.++..+++|.+....      ....+|.+|++++++++||||+++++++....  ..++||
T Consensus         7 ~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~iv~   78 (256)
T cd05114           7 TFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGA------MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQK--PLYIVT   78 (256)
T ss_pred             EEeeEecCCcCceEEEEEeccCceEEEEecccCC------ccHHHHHHHHHHHHHCCCCCceeEEEEEccCC--CEEEEE
Confidence            3457899999999999999888889998765322      12457899999999999999999999998876  579999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.++++... ..++|..+..++.+++.||+|||+.+  ++||||||+||++++++.+||+|||.++...... 
T Consensus        79 e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~  155 (256)
T cd05114          79 EFMENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYLERNS--FIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEY  155 (256)
T ss_pred             EcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCC--ccccccCcceEEEcCCCeEEECCCCCccccCCCce
Confidence            9999999999987433 35899999999999999999999998  9999999999999999999999999987643211 


Q ss_pred             ---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          460 ---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       460 ---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                               ..+.+++......++.++||||||+++|||+| |+.||..  ....+.......+...    ..+      
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~--~~~~~~~~~i~~~~~~----~~~------  223 (256)
T cd05114         156 TSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEK--KSNYEVVEMISRGFRL----YRP------  223 (256)
T ss_pred             eccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHCCCCC----CCC------
Confidence                     11223333333346789999999999999999 8999943  2333333333322111    111      


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAAIL  561 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L  561 (592)
                      ...+..+.+++.+||+.+|++||++.++++.|
T Consensus       224 ~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         224 KLASMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             CCCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence            11234689999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=7.7e-37  Score=304.03  Aligned_cols=243  Identities=21%  Similarity=0.344  Sum_probs=192.9

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ..+.+.||+|+||.||+|.+. .+..+++|.+....      ....+|.+|++++++++|+||++++++|....  ..++
T Consensus         8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~l   79 (263)
T cd05052           8 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT------MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP--PFYI   79 (263)
T ss_pred             eEEeeecCCcccceEEEEEEecCCceEEEEEecCCc------hHHHHHHHHHHHHHhCCCCChhheEEEEcCCC--CcEE
Confidence            345678999999999999964 57889998775321      12467899999999999999999999998876  5689


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      +|||+++|+|.+++.......+++..++.++.|++.|++|||+.+  ++||||||+||++++++.+||+|||+++.....
T Consensus        80 v~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~--i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~  157 (263)
T cd05052          80 ITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGD  157 (263)
T ss_pred             EEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EeecccCcceEEEcCCCcEEeCCCccccccccc
Confidence            999999999999987655567899999999999999999999988  999999999999999999999999998866432


Q ss_pred             hh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          459 EM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       459 ~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      ..          .+.+++......++.++|||||||++|||+| |..||..  .+..+......... .      +   .
T Consensus       158 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~--~~~~~~~~~~~~~~-~------~---~  225 (263)
T cd05052         158 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELLEKGY-R------M---E  225 (263)
T ss_pred             eeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHCCC-C------C---C
Confidence            11          1233343334446789999999999999998 9999843  33344333332211 0      0   1


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      .+...+.++.+++.+||+.+|++||++.++++.|+.+
T Consensus       226 ~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         226 RPEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             CCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence            1223446799999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=9e-37  Score=303.13  Aligned_cols=247  Identities=22%  Similarity=0.337  Sum_probs=193.7

Q ss_pred             HHHHhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          296 EAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       296 ~~~~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      ......+.+.||+|+||.||+|.+.++..|++|.+.....      ..++|.+|++++++++|+||+++++++...+  .
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~   75 (261)
T cd05068           4 DRTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTM------DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEE--P   75 (261)
T ss_pred             chhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcc------cHHHHHHHHHHHHHCCCCCccceeEEEecCC--C
Confidence            3344556789999999999999988888899998754321      2467899999999999999999999998877  6


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++++|.+++.......++|..+.+++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++..
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~  153 (261)
T cd05068          76 IYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQN--YIHRDLAARNVLVGENNICKVADFGLARVI  153 (261)
T ss_pred             eeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeccCCcceEEEcCCCCEEECCcceEEEc
Confidence            799999999999999997555567899999999999999999999998  999999999999999999999999998765


Q ss_pred             hhhhh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          456 AMAEM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       456 ~~~~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      .....          .+.+++......++.++||||||+++|||+| |+.||...  ...+........ ...       
T Consensus       154 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~--~~~~~~~~~~~~-~~~-------  223 (261)
T cd05068         154 KEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGM--TNAEVLQQVDQG-YRM-------  223 (261)
T ss_pred             cCCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHcC-CCC-------
Confidence            42211          1222333333345789999999999999999 99999432  222222222111 110       


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                        ..+...+..+.+++.+||+.+|++||++.++.+.|+++
T Consensus       224 --~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~~  261 (261)
T cd05068         224 --PCPPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLEDF  261 (261)
T ss_pred             --CCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhcC
Confidence              11223346789999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=4.2e-37  Score=292.23  Aligned_cols=272  Identities=20%  Similarity=0.220  Sum_probs=205.5

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.|++|.||.||+|+. +++..||+|+++....++.   .-..-.+||.+|.+++|||||.+-.+....+-...|+|||
T Consensus        81 lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~G---FPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~VMe  157 (419)
T KOG0663|consen   81 LNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEG---FPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIVME  157 (419)
T ss_pred             HhhcccCcceeEEEeccCCcceeEEeeecccccccCC---CcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeeeHH
Confidence            36799999999999995 4688999999987664432   2234578999999999999999999888765557899999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA  461 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~~  461 (592)
                      ||+. +|..+++.. .+.+......-+..|+.+|++|||+..  |+|||||++|+|+...|.+||+|||+||.+......
T Consensus       158 ~~Eh-DLksl~d~m-~q~F~~~evK~L~~QlL~glk~lH~~w--ilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k~  233 (419)
T KOG0663|consen  158 YVEH-DLKSLMETM-KQPFLPGEVKTLMLQLLRGLKHLHDNW--ILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLKP  233 (419)
T ss_pred             HHHh-hHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHhhce--eEecccchhheeeccCCcEEecccchhhhhcCCccc
Confidence            9987 898888643 467888999999999999999999999  999999999999999999999999999998765332


Q ss_pred             hcc---cccCC-------CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC-----
Q 007711          462 ATS---KKLSS-------APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS-----  526 (592)
Q Consensus       462 ~~~---~~~~~-------~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  526 (592)
                      ++.   +.+|+       ++.|++..|+||+|||+.|++++++-|.+. .++.+ ...+..-.+...+-+.|...     
T Consensus       234 ~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~-sE~dQ-l~~If~llGtPte~iwpg~~~lp~~  311 (419)
T KOG0663|consen  234 YTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGK-SEIDQ-LDKIFKLLGTPSEAIWPGYSELPAV  311 (419)
T ss_pred             CcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCC-chHHH-HHHHHHHhCCCccccCCCccccchh
Confidence            222   22333       445899999999999999999999888432 22222 22222111111111111110     


Q ss_pred             ---------------CCCHH-HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCCCCccCcccHHHHH
Q 007711          527 ---------------SFDEE-QLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIE  585 (592)
Q Consensus       527 ---------------~~~~~-~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~~p~~~~~~~~~~~  585 (592)
                                     .+... ..+.-++++...+..||++|.|++|.++  .+.....|...-|.+.|.|.++.+
T Consensus       312 k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~--h~~F~e~P~p~~P~~~Pt~P~k~~  384 (419)
T KOG0663|consen  312 KKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLK--HEYFRETPLPIDPSMFPTWPAKSE  384 (419)
T ss_pred             hccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhc--ccccccCCCCCChhhcCCCccccc
Confidence                           11111 3367789999999999999999998876  566777788888888888776654

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=6.3e-37  Score=321.43  Aligned_cols=255  Identities=20%  Similarity=0.302  Sum_probs=191.3

Q ss_pred             HHHHHHHhhhhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeee
Q 007711          293 SELEAACEDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLI  365 (592)
Q Consensus       293 ~el~~~~~~~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~  365 (592)
                      .+.......+.+.||+|+||.||+|+..      .+..||||++.....    ....+.|.+|++++++++ ||||++++
T Consensus        32 ~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~----~~~~~~~~~Ei~~l~~l~~HpnIv~l~  107 (400)
T cd05105          32 WEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR----SSEKQALMSELKIMTHLGPHLNIVNLL  107 (400)
T ss_pred             eeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCC----hHHHHHHHHHHHHHHhcCCCCCeeeEE
Confidence            3444444456689999999999999852      134689998754321    234567999999999996 99999999


Q ss_pred             EEEecCCCcceEEEEeeCCCCCchhhccccC-------------------------------------------------
Q 007711          366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE-------------------------------------------------  396 (592)
Q Consensus       366 g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-------------------------------------------------  396 (592)
                      |+|....  ..++|||||++|+|.++++...                                                 
T Consensus       108 ~~~~~~~--~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (400)
T cd05105         108 GACTKSG--PIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADT  185 (400)
T ss_pred             EEEccCC--ceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccc
Confidence            9998776  6799999999999998875321                                                 


Q ss_pred             ---------------------------------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCc
Q 007711          397 ---------------------------------------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL  431 (592)
Q Consensus       397 ---------------------------------------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dL  431 (592)
                                                                   ...+++..+++++.+++.|++|||+.+  ++||||
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivH~di  263 (400)
T cd05105         186 TQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKN--CVHRDL  263 (400)
T ss_pred             cccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCC
Confidence                                                         124788889999999999999999998  999999


Q ss_pred             CCCCeEEcCCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCC
Q 007711          432 NSSAVHLTEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVD  499 (592)
Q Consensus       432 k~~NiLl~~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~  499 (592)
                      ||+|||+++++.+||+|||+++.......           .+.+++......++.++|||||||++|||++ |..||...
T Consensus       264 kp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~  343 (400)
T cd05105         264 AARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGM  343 (400)
T ss_pred             ChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCccc
Confidence            99999999999999999999876532111           1222333333346889999999999999998 99998532


Q ss_pred             CCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          500 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      ..  .+............         ..+..++..+.+++.+||+.||++||++.+|++.|+++.+
T Consensus       344 ~~--~~~~~~~~~~~~~~---------~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~~  399 (400)
T cd05105         344 IV--DSTFYNKIKSGYRM---------AKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP  399 (400)
T ss_pred             ch--hHHHHHHHhcCCCC---------CCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHcC
Confidence            21  11111112111111         1123345678999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=8.7e-37  Score=312.15  Aligned_cols=246  Identities=17%  Similarity=0.285  Sum_probs=188.0

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCc----EEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGV----EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~----~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      ...+.||+|+||.||+|++. ++.    .||+|.+....    .....++|.+|+.+++.++|+||++++|+|....   
T Consensus        10 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~---   82 (316)
T cd05108          10 KKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT----SPKANKEILDEAYVMASVDNPHVCRLLGICLTST---   82 (316)
T ss_pred             eeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccC----CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCC---
Confidence            34578999999999999864 333    37888764321    1234577999999999999999999999998653   


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++++||+++|+|.++++.. ...+++...++++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++..
T Consensus        83 ~~~v~e~~~~g~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~LH~~~--iiH~dlkp~Nill~~~~~~kl~DfG~a~~~  159 (316)
T cd05108          83 VQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEERR--LVHRDLAARNVLVKTPQHVKITDFGLAKLL  159 (316)
T ss_pred             ceeeeecCCCCCHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHHHhcC--eeccccchhheEecCCCcEEEccccccccc
Confidence            47999999999999998743 346889999999999999999999998  999999999999999999999999999876


Q ss_pred             hhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          456 AMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       456 ~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      .....           .+.+++......++.++|||||||++|||+| |+.||..  ....++.. ........      
T Consensus       160 ~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~--~~~~~~~~-~~~~~~~~------  230 (316)
T cd05108         160 GADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG--IPASEISS-ILEKGERL------  230 (316)
T ss_pred             cCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCC--CCHHHHHH-HHhCCCCC------
Confidence            42221           1222232233346889999999999999998 9999943  22333222 22211111      


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                         ..+..+...+.+++.+||+.+|++||++.+++..|..+....
T Consensus       231 ---~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~~  272 (316)
T cd05108         231 ---PQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDP  272 (316)
T ss_pred             ---CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHcCC
Confidence               011223356889999999999999999999999999887653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-37  Score=283.77  Aligned_cols=250  Identities=22%  Similarity=0.338  Sum_probs=195.4

Q ss_pred             hhhhcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC---Ccc
Q 007711          300 EDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE---PFT  375 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~---~~~  375 (592)
                      +.+.+.+|+|||..||.++ ..++..+|+|++.....+     ..+..++|++..++++|||++++++++..+.   ...
T Consensus        23 yri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~-----~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~   97 (302)
T KOG2345|consen   23 YRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQE-----DIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHE   97 (302)
T ss_pred             EEEeeeecCCCceeeeeecccCcccchhhheeeccchH-----HHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCcee
Confidence            3456789999999999998 678899999998776533     3667889999999999999999998876443   224


Q ss_pred             eEEEEeeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcch
Q 007711          376 RMMVFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  453 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~  453 (592)
                      .||++.|...|+|.+.+...  ++..++..+.++|+.|+++||++||+..|+++||||||.|||+.+++.+++.|||.++
T Consensus        98 ~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~  177 (302)
T KOG2345|consen   98 AYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSAT  177 (302)
T ss_pred             EEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCcc
Confidence            79999999999999988653  4557899999999999999999999999999999999999999999999999999987


Q ss_pred             hhhhh------------hhhhcccccCCCCC---------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhc
Q 007711          454 EIAMA------------EMAATSKKLSSAPS---------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS  512 (592)
Q Consensus       454 ~~~~~------------~~~~~~~~~~~~~~---------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~  512 (592)
                      .....            .........+++||         .++++|||||||+||+|+.|..||+..          +.+
T Consensus       178 ~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~----------~~~  247 (302)
T KOG2345|consen  178 QAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERI----------YQQ  247 (302)
T ss_pred             ccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHH----------hhc
Confidence            65310            01112234455665         589999999999999999999999421          111


Q ss_pred             CCCCCc-cccCCCCC-CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          513 GVQPLQ-QFVDPTLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       513 ~~~~~~-~~~~~~~~-~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      + ..+. .+..+.+. +....-++.+.+++.+|++.||.+||+..+++..++++.
T Consensus       248 G-gSlaLAv~n~q~s~P~~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~Li  301 (302)
T KOG2345|consen  248 G-GSLALAVQNAQISIPNSSRYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDLI  301 (302)
T ss_pred             C-CeEEEeeeccccccCCCCCccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhhc
Confidence            1 2211 11121111 011113467999999999999999999999999998764

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-37  Score=313.07  Aligned_cols=234  Identities=23%  Similarity=0.381  Sum_probs=190.3

Q ss_pred             cccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      ..||+|+.|.||.+. ..++..||||.+....+..     .+-...|+.+|+..+|+|||.++..+...+  +.++||||
T Consensus       279 ~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~-----keLilnEi~Vm~~~~H~NiVnfl~Sylv~d--eLWVVMEy  351 (550)
T KOG0578|consen  279 KKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPK-----KELLLNEILVMRDLHHPNIVNFLDSYLVGD--ELWVVMEY  351 (550)
T ss_pred             hhhccccccceeeeeeccCCceEEEEEEEeccCCc-----hhhhHHHHHHHHhccchHHHHHHHHhcccc--eeEEEEee
Confidence            569999999999998 5678899999987765443     455789999999999999999998887766  78999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh---
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---  459 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~---  459 (592)
                      |++|+|.|.+.   ...++..+...|+.++++||+|||..+  |+|||||..|||++.++.+||+|||++..+....   
T Consensus       352 m~ggsLTDvVt---~~~~~E~qIA~Icre~l~aL~fLH~~g--IiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR  426 (550)
T KOG0578|consen  352 MEGGSLTDVVT---KTRMTEGQIAAICREILQGLKFLHARG--IIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKR  426 (550)
T ss_pred             cCCCchhhhhh---cccccHHHHHHHHHHHHHHHHHHHhcc--eeeeccccceeEeccCCcEEEeeeeeeeccccccCcc
Confidence            99999999885   345899999999999999999999999  9999999999999999999999999998875433   


Q ss_pred             hhhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          460 MAATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       460 ~~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                      .....+.||++||      |.+|.||||||++++||+-|++||..++. +.....-...+.        |.+ ..++...
T Consensus       427 ~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~P-lrAlyLIa~ng~--------P~l-k~~~klS  496 (550)
T KOG0578|consen  427 STMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENP-LRALYLIATNGT--------PKL-KNPEKLS  496 (550)
T ss_pred             ccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCCh-HHHHHHHhhcCC--------CCc-CCccccC
Confidence            2233456777776      78999999999999999999999964322 221111111111        111 2245556


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .++.+++.+|++.|+++|+++.|+++
T Consensus       497 ~~~kdFL~~cL~~dv~~RasA~eLL~  522 (550)
T KOG0578|consen  497 PELKDFLDRCLVVDVEQRASAKELLE  522 (550)
T ss_pred             HHHHHHHHHHhhcchhcCCCHHHHhc
Confidence            78999999999999999999999986

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=8.3e-37  Score=303.30  Aligned_cols=243  Identities=22%  Similarity=0.395  Sum_probs=190.9

Q ss_pred             hhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ..+.++||+|+||.||+|...++..+++|.+....      ...+.|.+|+.++++++|+||+++++++...+  ..+++
T Consensus         8 ~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   79 (261)
T cd05072           8 IKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT------MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEE--PIYII   79 (261)
T ss_pred             eEEeeecCCcCCceEEEEEecCCceEEEEEccCCc------hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC--CcEEE
Confidence            34568899999999999998888889999765322      12467999999999999999999999988776  57999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||+++|+|.++++......+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++......
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~--i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~  157 (261)
T cd05072          80 TEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN--YIHRDLRAANVLVSESLMCKIADFGLARVIEDNE  157 (261)
T ss_pred             EecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccccchhhEEecCCCcEEECCCccceecCCCc
Confidence            99999999999997655567899999999999999999999988  9999999999999999999999999998654221


Q ss_pred             h----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          460 M----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       460 ~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      .          .+.+++......++.++|||||||++|||+| |+.||....  ..+........ ...     +.    
T Consensus       158 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~--~~~~~~~~~~~-~~~-----~~----  225 (261)
T cd05072         158 YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMS--NSDVMSALQRG-YRM-----PR----  225 (261)
T ss_pred             eeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCC--HHHHHHHHHcC-CCC-----CC----
Confidence            1          1222333333346788999999999999999 999994322  22222222211 111     11    


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      ....+..+.+++.+||+.+|++||+++++.+.|+++
T Consensus       226 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  261 (261)
T cd05072         226 MENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDDF  261 (261)
T ss_pred             CCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhcC
Confidence            112345688999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-37  Score=298.92  Aligned_cols=251  Identities=21%  Similarity=0.291  Sum_probs=195.6

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||+||.++- +.++.+|+|++.++....  ....+..+.|..+|.+++||.||++.-.+.+.+  ..|+|+
T Consensus        29 ~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~--~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~--kLylVl  104 (357)
T KOG0598|consen   29 ILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVE--KKEVRHTKAERNILSKIKHPFIVKLIYSFQTEE--KLYLVL  104 (357)
T ss_pred             eeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhh--hhhHHHHHHHHHHHHhCCCCcEeeeEEecccCC--eEEEEE
Confidence            458899999999999985 568899999887654332  234567889999999999999999998888777  789999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+.||.|+.+|.  ....++.....-++.+|+.||.|||+++  ||||||||+|||+|++|+++|+|||+++...... 
T Consensus       105 d~~~GGeLf~hL~--~eg~F~E~~arfYlaEi~lAL~~LH~~g--IiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~  180 (357)
T KOG0598|consen  105 DYLNGGELFYHLQ--REGRFSEDRARFYLAEIVLALGYLHSKG--IIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGD  180 (357)
T ss_pred             eccCCccHHHHHH--hcCCcchhHHHHHHHHHHHHHHHHHhCC--eeeccCCHHHeeecCCCcEEEeccccchhcccCCC
Confidence            9999999999886  4457888888888999999999999999  9999999999999999999999999999653221 


Q ss_pred             --------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 --------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 --------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                              ..+.+||......++..+|+||+||++|||+||.+||.  ..+..++...+..+.          +...+..
T Consensus       181 ~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~--~~~~~~~~~~I~~~k----------~~~~p~~  248 (357)
T KOG0598|consen  181 ATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFY--AEDVKKMYDKILKGK----------LPLPPGY  248 (357)
T ss_pred             ccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCc--CccHHHHHHHHhcCc----------CCCCCcc
Confidence                    12223333333347999999999999999999999994  344455555555442          1111222


Q ss_pred             HHHHHHHHHHHhcccCCCCCCC----HHHHHHHHHhhhCCCCCCCCCccCcccHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPT----MRDIAAILREITGITPDGAIPKLSPLWWAEIE  585 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs----~~ev~~~L~~i~~~~~~~~~p~~~~~~~~~~~  585 (592)
                      ...+.++++...++.||++|..    +.+             -...|.+....|.++.
T Consensus       249 ls~~ardll~~LL~rdp~~RLg~~~d~~~-------------ik~HpfF~~inW~~l~  293 (357)
T KOG0598|consen  249 LSEEARDLLKKLLKRDPRQRLGGPGDAEE-------------IKRHPFFKGINWEKLL  293 (357)
T ss_pred             CCHHHHHHHHHHhccCHHHhcCCCCChHH-------------hhcCcccccCCHHHHH
Confidence            3356889999999999999974    332             2456777777777654

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=7e-37  Score=326.31  Aligned_cols=247  Identities=20%  Similarity=0.333  Sum_probs=196.8

Q ss_pred             hhcccCcCCCeEEEEEEeCCC-cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEE-Eec---CC-Cc
Q 007711          302 FSNVIGSSPIGTVYKGTLSNG-VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGF-CEE---EE-PF  374 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~-~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~-~~~---~~-~~  374 (592)
                      +.+.|.+|||+.||.+....+ ..+|+|+.....     +...+..++||++|++|+ |+|||.+++. ...   .. .+
T Consensus        41 V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~d-----e~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   41 VEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVND-----EEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             EEEEEccCCcEEEEEEEecCCCceeeeeeeecCC-----HHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            357899999999999997665 999999887653     234677899999999996 9999999993 221   22 35


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      +.+|.||||++|+|-|++..+....|.....++|+.++++|+++||.+.|||||||||.+||||+.++..||||||.+..
T Consensus       116 EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt  195 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATT  195 (738)
T ss_pred             EEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCccccccc
Confidence            78999999999999999987767779999999999999999999999999999999999999999999999999999865


Q ss_pred             hhhh------------hhhhcccccCCCC---------CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcC
Q 007711          455 IAMA------------EMAATSKKLSSAP---------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG  513 (592)
Q Consensus       455 ~~~~------------~~~~~~~~~~~~~---------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~  513 (592)
                      ....            .....++.-|++|         .+++|+|||++||+||-|+....||+..+             
T Consensus       196 ~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg-------------  262 (738)
T KOG1989|consen  196 KILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESG-------------  262 (738)
T ss_pred             ccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCc-------------
Confidence            3211            0111112233444         47999999999999999999999995321             


Q ss_pred             CCCCccccCCCCC-CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          514 VQPLQQFVDPTLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       514 ~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                         -..|++.... .-.+.....+.+||+.||+.||++||++-+|+..+.++.....
T Consensus       263 ---~laIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~~  316 (738)
T KOG1989|consen  263 ---KLAILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANKPC  316 (738)
T ss_pred             ---ceeEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCCC
Confidence               1122222211 1123456789999999999999999999999999999987653

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=7.1e-36  Score=299.80  Aligned_cols=247  Identities=19%  Similarity=0.314  Sum_probs=184.9

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcE----EEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVE----IAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~----vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.+.||+|+||.||+|.+. ++..    +++|.+...    .......++..|+..+++++||||++++|++...   ..
T Consensus        11 ~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~----~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~---~~   83 (279)
T cd05111          11 KLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDR----SGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGA---SL   83 (279)
T ss_pred             eccccCccCCcceEEEEEcCCCCceeeEEEEeecccc----cchHHHHHHHHHHHHHhcCCCCCcceEEEEECCC---cc
Confidence            3578999999999999964 3443    455554321    1123346788888899999999999999998643   35


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++++||+++|+|.++++.. ...++|.....++.|++.|++|||+.+  ++||||||+||++++++.+||+|||+++...
T Consensus        84 ~~i~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~--iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~  160 (279)
T cd05111          84 QLVTQLSPLGSLLDHVRQH-RDSLDPQRLLNWCVQIAKGMYYLEEHR--MVHRNLAARNILLKSDSIVQIADFGVADLLY  160 (279)
T ss_pred             EEEEEeCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCC--EeccccCcceEEEcCCCcEEEcCCccceecc
Confidence            7899999999999998642 346899999999999999999999988  9999999999999999999999999997653


Q ss_pred             hhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          457 MAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       457 ~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ....           .+.+++......++.++|||||||++||++| |+.||....  .... ...+......   ..+ 
T Consensus       161 ~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~--~~~~-~~~~~~~~~~---~~~-  233 (279)
T cd05111         161 PDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMR--PHEV-PDLLEKGERL---AQP-  233 (279)
T ss_pred             CCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCC--HHHH-HHHHHCCCcC---CCC-
Confidence            2211           1222333333346889999999999999998 999995332  2221 1222211111   111 


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCC
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  570 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~  570 (592)
                           ..+...+.+++.+||..+|++||++.|+++.|+.+.+.+|.
T Consensus       234 -----~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~~~~  274 (279)
T cd05111         234 -----QICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMARDPPR  274 (279)
T ss_pred             -----CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHhCCcc
Confidence                 12334678899999999999999999999999998876654

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=1.9e-36  Score=304.94  Aligned_cols=242  Identities=17%  Similarity=0.230  Sum_probs=184.6

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+.||+|+||.||++.. .+|..||+|.+.......  ......+.+|++++.+++|+||+++++++...+  ..++|+
T Consensus         4 ~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~--~~~lv~   79 (285)
T cd05631           4 HYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK--RKGEAMALNEKRILEKVNSRFVVSLAYAYETKD--ALCLVL   79 (285)
T ss_pred             EEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhh--hhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCC--eEEEEE
Confidence            347899999999999985 578999999886543222  123456889999999999999999999998777  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++.......+++..+..++.+++.|++|||+.+  |+||||||+|||+++++.+||+|||+++...... 
T Consensus        80 e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~  157 (285)
T cd05631          80 TIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRER--IVYRDLKPENILLDDRGHIRISDLGLAVQIPEGET  157 (285)
T ss_pred             EecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCe
Confidence            9999999988876444456899999999999999999999998  9999999999999999999999999987643211 


Q ss_pred             -------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCCh-HHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 -------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-EDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 -------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                             ..+.+++......++.++|||||||++|||+||+.||....... .+........   .       ...++..
T Consensus       158 ~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~---~-------~~~~~~~  227 (285)
T cd05631         158 VRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKE---D-------QEEYSEK  227 (285)
T ss_pred             ecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhc---c-------cccCCcc
Confidence                   12233444444457889999999999999999999996433211 1111111111   0       0111222


Q ss_pred             HHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPT-----MRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs-----~~ev~~  559 (592)
                      .+..+.+++.+||+.||++||+     ++++++
T Consensus       228 ~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~  260 (285)
T cd05631         228 FSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQ  260 (285)
T ss_pred             CCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhc
Confidence            3457889999999999999997     676664

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=3.9e-36  Score=299.43  Aligned_cols=244  Identities=22%  Similarity=0.393  Sum_probs=189.8

Q ss_pred             hhhhcccCcCCCeEEEEEEeCC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      .++.+.||+|+||.||+|.+..    ...+++|.+....    ......+|.+|+.++++++|+||+++++++...+  .
T Consensus         6 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~   79 (266)
T cd05033           6 VTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGS----SDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSR--P   79 (266)
T ss_pred             ceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCC----ChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCC--c
Confidence            3456889999999999999743    3578888765332    2334567999999999999999999999998776  5


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++|+|.+++... ...+++..+.+++.+++.|++|||+.+  |+||||||+||++++++.+||+|||+++..
T Consensus        80 ~~iv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~Lh~~~--i~H~di~p~nili~~~~~~~l~dfg~~~~~  156 (266)
T cd05033          80 VMIITEYMENGSLDKFLREN-DGKFTVGQLVGMLRGIASGMKYLSEMN--YVHRDLAARNILVNSNLVCKVSDFGLSRRL  156 (266)
T ss_pred             eEEEEEcCCCCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCcceEEEcCCCCEEECccchhhcc
Confidence            79999999999999998643 347899999999999999999999988  999999999999999999999999999876


Q ss_pred             hhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          456 AMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       456 ~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      .....           .+.+++......++.++||||||+++||+++ |..||..  ....+........ ...     +
T Consensus       157 ~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~--~~~~~~~~~~~~~-~~~-----~  228 (266)
T cd05033         157 EDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWD--MSNQDVIKAVEDG-YRL-----P  228 (266)
T ss_pred             cccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCC--CCHHHHHHHHHcC-CCC-----C
Confidence            41111           1222333333346789999999999999998 9999842  2222222222211 111     1


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                          .+..++..+.+++.+||+.+|++||++.|+++.|+++
T Consensus       229 ----~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         229 ----PPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             ----CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                1223346789999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=2.4e-36  Score=303.73  Aligned_cols=244  Identities=26%  Similarity=0.427  Sum_probs=188.7

Q ss_pred             hhhcccCcCCCeEEEEEEeCCC------cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNG------VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  374 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~------~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  374 (592)
                      .+.+.||+|+||.||+|.....      ..+++|.+....    ......+|.+|++++.+++||||+++++++...+  
T Consensus         8 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~----~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~--   81 (283)
T cd05048           8 RFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENA----EPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQ--   81 (283)
T ss_pred             chhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCC----CHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCC--
Confidence            3457899999999999986432      467888765322    2334567999999999999999999999998776  


Q ss_pred             ceEEEEeeCCCCCchhhccccCC--------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKES--------------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE  440 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~--------------~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~  440 (592)
                      ..+++|||+++|+|.+++.....              ..+++.....++.+++.|++|||+.+  ++||||||+||++++
T Consensus        82 ~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~--i~H~dlkp~Nil~~~  159 (283)
T cd05048          82 PTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHH--FVHRDLAARNCLVGE  159 (283)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccccccceEEEcC
Confidence            56899999999999998864311              45788999999999999999999998  999999999999999


Q ss_pred             CCceEEecCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHH
Q 007711          441 DYAAKLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAA  508 (592)
Q Consensus       441 ~~~~ki~DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~  508 (592)
                      ++.+||+|||+++......           ..+.+|+......++.++|||||||++|||+| |..||...  ...+...
T Consensus       160 ~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~--~~~~~~~  237 (283)
T cd05048         160 GLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGF--SNQEVIE  237 (283)
T ss_pred             CCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCC--CHHHHHH
Confidence            9999999999987542211           11233443333446889999999999999998 99998532  2233332


Q ss_pred             HHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      ....+.          ....+..++.++.+++.+||+.||++||++.||++.|+++
T Consensus       238 ~i~~~~----------~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05048         238 MIRSRQ----------LLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRSW  283 (283)
T ss_pred             HHHcCC----------cCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhcC
Confidence            222211          1112334557899999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=3.5e-36  Score=298.11  Aligned_cols=239  Identities=20%  Similarity=0.335  Sum_probs=186.5

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||.||+|.+.++..+|+|.+.....      ...+|.+|+.++.+++||||++++++|....  ..++||
T Consensus         7 ~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   78 (256)
T cd05113           7 TFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM------SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQR--PIYIVT   78 (256)
T ss_pred             EEeeEecCcccceEEEEEecCCCcEEEEEcCCCcc------cHHHHHHHHHHHhcCCCCCeeeEEEEEccCC--CcEEEE
Confidence            35578999999999999988777899998753221      2457899999999999999999999998776  469999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++.... ..++|..+.+++.+++.|++|||+.+  ++|+||||+||++++++.+||+|||.++...... 
T Consensus        79 e~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~  155 (256)
T cd05113          79 EYMSNGCLLNYLREHG-KRFQPSQLLEMCKDVCEGMAYLESKQ--FIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEY  155 (256)
T ss_pred             EcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCC--eeccccCcceEEEcCCCCEEECCCccceecCCCce
Confidence            9999999999986433 36899999999999999999999998  9999999999999999999999999987543211 


Q ss_pred             ---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          460 ---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       460 ---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                               ..+.+++......++.++|||||||++|||+| |+.||....  ..+.......+...      +    .+
T Consensus       156 ~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~--~~~~~~~~~~~~~~------~----~~  223 (256)
T cd05113         156 TSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFN--NSETVEKVSQGLRL------Y----RP  223 (256)
T ss_pred             eecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCC--HHHHHHHHhcCCCC------C----CC
Confidence                     11233333333446889999999999999999 999984322  22222222222111      0    01


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                      ...+..+.+++.+||+.+|.+||++.++++.|+
T Consensus       224 ~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         224 HLASEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             CCCCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence            112357899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-37  Score=307.04  Aligned_cols=237  Identities=23%  Similarity=0.297  Sum_probs=184.8

Q ss_pred             hhcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      |.+.||+|+|++||+|+ ...++++|||++.+.....  ..-.+-...|-+.|.++ .||.|++|+--+.+..  ..|+|
T Consensus        77 Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iik--e~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~--sLYFv  152 (604)
T KOG0592|consen   77 FGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIK--EKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEE--SLYFV  152 (604)
T ss_pred             hhheeccccceeEEEeeecCCCceeeHhhhhHHHHHh--hcccchhhHHHHHHHHhhCCCCeEEEEEEeeccc--ceEEE
Confidence            57889999999999999 4578999999886432211  11123355688888888 8999999998888777  78999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||+++|+|.++|+.  ...|+......+|.+|..||+|||+++  ||||||||+|||||+||++||+|||.|+.+....
T Consensus       153 Le~A~nGdll~~i~K--~Gsfde~caR~YAAeIldAleylH~~G--IIHRDlKPENILLd~dmhikITDFGsAK~l~~~~  228 (604)
T KOG0592|consen  153 LEYAPNGDLLDLIKK--YGSFDETCARFYAAEILDALEYLHSNG--IIHRDLKPENILLDKDGHIKITDFGSAKILSPSQ  228 (604)
T ss_pred             EEecCCCcHHHHHHH--hCcchHHHHHHHHHHHHHHHHHHHhcC--ceeccCChhheeEcCCCcEEEeeccccccCChhh
Confidence            999999999999973  467888888889999999999999999  9999999999999999999999999999875332


Q ss_pred             hh----------------------hcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC
Q 007711          460 MA----------------------ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL  517 (592)
Q Consensus       460 ~~----------------------~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~  517 (592)
                      ..                      +.+||.......+..+|+|+||||||.|+.|++||..  ....-.++.++.-...+
T Consensus       229 ~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra--~NeyliFqkI~~l~y~f  306 (604)
T KOG0592|consen  229 KSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRA--ANEYLIFQKIQALDYEF  306 (604)
T ss_pred             ccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCcc--ccHHHHHHHHHHhcccC
Confidence            21                      1112222233367889999999999999999999943  33333344444332222


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                 ++.-++.+.+|+.+-+..||.+|++..+|.+
T Consensus       307 -----------p~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~  337 (604)
T KOG0592|consen  307 -----------PEGFPEDARDLIKKLLVRDPSDRLTSQQIKA  337 (604)
T ss_pred             -----------CCCCCHHHHHHHHHHHccCccccccHHHHhh
Confidence                       2233357889999999999999999988865

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=2.1e-36  Score=311.64  Aligned_cols=251  Identities=20%  Similarity=0.302  Sum_probs=189.0

Q ss_pred             HHhhhhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEec
Q 007711          298 ACEDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEE  370 (592)
Q Consensus       298 ~~~~~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~  370 (592)
                      ....+.+.||+|+||.||+|...      .++.||+|++.....    ....+.+.+|++++.++ +|+||++++++|..
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~----~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~   82 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGAT----ASEYKALMTELKILIHIGHHLNVVNLLGACTK   82 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCC----HHHHHHHHHHHHHHHhhccCcchhheeeeEec
Confidence            34556789999999999999742      246899998753221    22345678899999999 89999999999876


Q ss_pred             CCCcceEEEEeeCCCCCchhhccccC------------------------------------------------------
Q 007711          371 EEPFTRMMVFEYAPNGTLFEHIHIKE------------------------------------------------------  396 (592)
Q Consensus       371 ~~~~~~~lv~Ey~~~gsL~~~l~~~~------------------------------------------------------  396 (592)
                      .+. ..++++||+++|+|.+++....                                                      
T Consensus        83 ~~~-~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (337)
T cd05054          83 PGG-PLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEE  161 (337)
T ss_pred             CCC-CEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchh
Confidence            542 4689999999999998875321                                                      


Q ss_pred             -----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh-----------
Q 007711          397 -----SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-----------  460 (592)
Q Consensus       397 -----~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~-----------  460 (592)
                           ...++|..+.+++.+|+.||+|||+.+  |+||||||+|||+++++.+||+|||+++.+.....           
T Consensus       162 ~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~--ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~  239 (337)
T cd05054         162 GDELYKEPLTLEDLISYSFQVARGMEFLASRK--CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPL  239 (337)
T ss_pred             hhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCc
Confidence                 126899999999999999999999998  99999999999999999999999999987532111           


Q ss_pred             hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHH
Q 007711          461 AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGEL  539 (592)
Q Consensus       461 ~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  539 (592)
                      .+.+++......++.++|||||||++|||+| |+.||.....  .+.....+......         ..+.....++.++
T Consensus       240 ~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~--~~~~~~~~~~~~~~---------~~~~~~~~~~~~l  308 (337)
T cd05054         240 KWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQI--DEEFCRRLKEGTRM---------RAPEYATPEIYSI  308 (337)
T ss_pred             cccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCc--cHHHHHHHhccCCC---------CCCccCCHHHHHH
Confidence            1222333333337889999999999999998 9999953221  11111222111110         1122234578999


Q ss_pred             HHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          540 IKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       540 ~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      +.+||+.+|++||++.|+++.|++++.
T Consensus       309 ~~~cl~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         309 MLDCWHNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             HHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=5.3e-36  Score=297.48  Aligned_cols=243  Identities=23%  Similarity=0.391  Sum_probs=193.4

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||.|+||.||+|...++..+++|.+.....     ....++..|+++++.++|+||+++++++...+  ..++||
T Consensus         9 ~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~-----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~   81 (261)
T cd05148           9 TLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDL-----LKQQDFQKEVQALKRLRHKHLISLFAVCSVGE--PVYIIT   81 (261)
T ss_pred             HHhhhhccCCCccEEEeEecCCCcEEEEeccccch-----hhHHHHHHHHHHHhcCCCcchhheeeeEecCC--CeEEEE
Confidence            34578999999999999988889999998764332     23457889999999999999999999998877  569999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++|+|.++++......+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+||+|||++........
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~  159 (261)
T cd05148          82 ELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQN--SIHRDLAARNILVGEDLVCKVADFGLARLIKEDVY  159 (261)
T ss_pred             eecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccccCcceEEEcCCceEEEccccchhhcCCccc
Confidence            9999999999998666667899999999999999999999998  99999999999999999999999999876532211


Q ss_pred             ---------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          461 ---------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       461 ---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                               .+.+++......++.++||||||+++|||++ |+.||...  ...+.......+. ..         ..+.
T Consensus       160 ~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~--~~~~~~~~~~~~~-~~---------~~~~  227 (261)
T cd05148         160 LSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGM--NNHEVYDQITAGY-RM---------PCPA  227 (261)
T ss_pred             cccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcC--CHHHHHHHHHhCC-cC---------CCCC
Confidence                     1222333333346788999999999999999 89999432  2333333322211 10         1122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      .++..+.+++.+||+.||++|||+.++++.|+.+
T Consensus       228 ~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         228 KCPQEIYKIMLECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence            3446789999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=2.7e-36  Score=309.36  Aligned_cols=235  Identities=17%  Similarity=0.218  Sum_probs=183.0

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      +.||+|+||.||++.. .+|..+|+|++.......  ......+.+|++++++++||||+++++++...+  ..++||||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~--~~~lv~e~   76 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIA--KDEVAHTLTESRVLQNTRHPFLTALKYSFQTHD--RLCFVMEY   76 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCC--EEEEEEeC
Confidence            3699999999999985 468899999886533211  223456788999999999999999999998877  67999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh----
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA----  458 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~----  458 (592)
                      +++|+|.+++..  ...+++.....++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....    
T Consensus        77 ~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~L~~lH~~~--ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~  152 (323)
T cd05571          77 ANGGELFFHLSR--ERVFSEDRARFYGAEIVSALGYLHSCD--VVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATM  152 (323)
T ss_pred             CCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcc
Confidence            999999988863  356889999999999999999999999  999999999999999999999999998753211    


Q ss_pred             -----hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          459 -----EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       459 -----~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                           ...+.+++......++.++|||||||++|||+||+.||..  .+..........+..           .++....
T Consensus       153 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~--~~~~~~~~~~~~~~~-----------~~p~~~~  219 (323)
T cd05571         153 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEEI-----------RFPRTLS  219 (323)
T ss_pred             cceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCC--CCHHHHHHHHHcCCC-----------CCCCCCC
Confidence                 1122333433334478899999999999999999999943  233333333222211           1122334


Q ss_pred             HHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      .++.+++.+||+.||++||     ++.++++
T Consensus       220 ~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  250 (323)
T cd05571         220 PEAKSLLAGLLKKDPKQRLGGGPEDAKEIME  250 (323)
T ss_pred             HHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence            5788999999999999999     7888864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-36  Score=307.78  Aligned_cols=233  Identities=18%  Similarity=0.224  Sum_probs=180.5

Q ss_pred             cCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeCC
Q 007711          306 IGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  384 (592)
Q Consensus       306 lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~~  384 (592)
                      ||+|+||.||+++.. ++..+|+|.+.......  ......+.+|++++.+++||||+++++++...+  ..++||||++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~~~   76 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVS--RSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPE--KLYLVLAFIN   76 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhCCCCcEeceeeEEecCC--eEEEEEcCCC
Confidence            799999999999964 57889999886432211  223467889999999999999999999998776  6799999999


Q ss_pred             CCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh------
Q 007711          385 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA------  458 (592)
Q Consensus       385 ~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~------  458 (592)
                      +|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....      
T Consensus        77 ~g~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~  152 (312)
T cd05585          77 GGELFHHLQR--EGRFDLSRARFYTAELLCALENLHKFN--VIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNT  152 (312)
T ss_pred             CCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eEeCCCCHHHeEECCCCcEEEEECcccccCccCCCcccc
Confidence            9999998863  346899999999999999999999998  999999999999999999999999998753211      


Q ss_pred             ---hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHH
Q 007711          459 ---EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET  535 (592)
Q Consensus       459 ---~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  535 (592)
                         ...+.+|+......++.++|||||||++|||+||+.||..  ....+...........           ++......
T Consensus       153 ~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~--~~~~~~~~~~~~~~~~-----------~~~~~~~~  219 (312)
T cd05585         153 FCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYD--ENVNEMYRKILQEPLR-----------FPDGFDRD  219 (312)
T ss_pred             ccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCC--CCHHHHHHHHHcCCCC-----------CCCcCCHH
Confidence               1122233333333478899999999999999999999943  3344444444332111           12223356


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHH
Q 007711          536 LGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       536 l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      +.+++.+||+.||++||++.++.+
T Consensus       220 ~~~li~~~L~~dp~~R~~~~~~~e  243 (312)
T cd05585         220 AKDLLIGLLSRDPTRRLGYNGAQE  243 (312)
T ss_pred             HHHHHHHHcCCCHHHcCCCCCHHH
Confidence            889999999999999986543333

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=7.2e-36  Score=296.05  Aligned_cols=238  Identities=20%  Similarity=0.316  Sum_probs=184.3

Q ss_pred             ccCcCCCeEEEEEEeC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          305 VIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       305 ~lG~G~~g~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .||+|+||.||+|.+.   ++..||+|.+.....    ....+.|.+|+.++++++|+||++++++|...   ..++|||
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~----~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~---~~~lv~e   74 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENE----KSVRDEMMREAEIMHQLDNPYIVRMIGVCEAE---ALMLVME   74 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccC----hHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCC---CeEEEEE
Confidence            3899999999999864   355788887754321    23456799999999999999999999998543   4689999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh-
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-  460 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~-  460 (592)
                      |+++|+|.+++... ...+++..+++++.+++.|++|||+++  ++||||||+||+++.++.+||+|||+++....... 
T Consensus        75 ~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~  151 (257)
T cd05115          75 MASGGPLNKFLSGK-KDEITVSNVVELMHQVSMGMKYLEGKN--FVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSY  151 (257)
T ss_pred             eCCCCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhcC--eeecccchheEEEcCCCcEEeccCCccccccCCccc
Confidence            99999999988642 356899999999999999999999998  99999999999999999999999999875432211 


Q ss_pred             -----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          461 -----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       461 -----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                                 .+.+++......++.++|||||||++||+++ |+.||..  ....++......+. .         ...
T Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~~-~---------~~~  219 (257)
T cd05115         152 YKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKK--MKGPEVMSFIEQGK-R---------LDC  219 (257)
T ss_pred             eeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCc--CCHHHHHHHHHCCC-C---------CCC
Confidence                       1122222222336779999999999999997 9999943  33333333332221 1         112


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      +..++.++.+++.+||..+|++||++.+|.+.|+.+
T Consensus       220 ~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         220 PAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence            233456799999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=4.9e-36  Score=297.66  Aligned_cols=246  Identities=22%  Similarity=0.381  Sum_probs=192.5

Q ss_pred             HHHHHhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc
Q 007711          295 LEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  374 (592)
Q Consensus       295 l~~~~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  374 (592)
                      +......+.++||+|+||.||+|..+++..+|+|.+.....      ...+|.+|++++++++|+||+++++++...   
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~------~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---   73 (260)
T cd05067           3 VPRETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM------SPEAFLAEANLMKQLQHPRLVRLYAVVTQE---   73 (260)
T ss_pred             cchHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC------cHHHHHHHHHHHHhcCCcCeeeEEEEEccC---
Confidence            44555667789999999999999988899999998753321      235789999999999999999999987543   


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..++++||+++|+|.+++.......+++..+..++.+++.||+|||+.+  ++||||||+||++++++.++|+|||+++.
T Consensus        74 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~--i~H~dl~p~ni~i~~~~~~~l~dfg~~~~  151 (260)
T cd05067          74 PIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKN--YIHRDLRAANILVSETLCCKIADFGLARL  151 (260)
T ss_pred             CcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC--eecccccHHhEEEcCCCCEEEccCcceee
Confidence            4689999999999999987655567899999999999999999999998  99999999999999999999999999876


Q ss_pred             hhhhhh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          455 IAMAEM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       455 ~~~~~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ......          .+.+++......++.++|||||||++||++| |+.||...  ...+........ ...      
T Consensus       152 ~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~--~~~~~~~~~~~~-~~~------  222 (260)
T cd05067         152 IEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGM--TNPEVIQNLERG-YRM------  222 (260)
T ss_pred             cCCCCcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHcC-CCC------
Confidence            542111          1223333333346789999999999999999 99999532  222322222111 111      


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                         ..+...+.++.+++.+||+.+|++||+++++...|+.
T Consensus       223 ---~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         223 ---PRPDNCPEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             ---CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence               1112234579999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=7e-36  Score=296.07  Aligned_cols=238  Identities=22%  Similarity=0.319  Sum_probs=184.5

Q ss_pred             ccCcCCCeEEEEEEe---CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          305 VIGSSPIGTVYKGTL---SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       305 ~lG~G~~g~Vy~g~~---~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .||+|+||.||+|.+   .++..+|+|++....   ......++|.+|+.++++++|+||++++|++...   ..++|||
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~---~~~lv~e   75 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDN---NDPALKDELLREANVMQQLDNPYIVRMIGICEAE---SWMLVME   75 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCC---CcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCC---CcEEEEe
Confidence            589999999999975   357889999875332   1234567899999999999999999999998643   4589999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh-
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-  460 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~-  460 (592)
                      |+++|+|.+++..  ...+++.....++.|++.|++|||+.+  ++||||||+||++++++.+||+|||+++....... 
T Consensus        76 ~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH~~~--i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~  151 (257)
T cd05116          76 LAELGPLNKFLQK--NKHVTEKNITELVHQVSMGMKYLEETN--FVHRDLAARNVLLVTQHYAKISDFGLSKALGADENY  151 (257)
T ss_pred             cCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccchhhEEEcCCCeEEECCCccccccCCCCCe
Confidence            9999999999863  346889999999999999999999998  99999999999999999999999999876542211 


Q ss_pred             -----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          461 -----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       461 -----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                                 .+.+++......++.++|||||||++|||+| |+.||...  ...++......+. ..         ..
T Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~--~~~~~~~~i~~~~-~~---------~~  219 (257)
T cd05116         152 YKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGM--KGNEVTQMIESGE-RM---------EC  219 (257)
T ss_pred             eeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHCCC-CC---------CC
Confidence                       1122222222335778999999999999998 99999532  2233333322221 10         11


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      +..++.++.+++.+||+.||++||++.+|++.|++.
T Consensus       220 ~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~  255 (257)
T cd05116         220 PQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRNY  255 (257)
T ss_pred             CCCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence            223446789999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-36  Score=305.95  Aligned_cols=237  Identities=19%  Similarity=0.244  Sum_probs=185.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... ++..+|+|.+.......  ....+.+.+|++++++++||||+++++++.+..  ..++||
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~   80 (291)
T cd05612           5 RIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIR--LKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQR--FLYMLM   80 (291)
T ss_pred             eeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhh--hHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCC--eEEEEE
Confidence            4578999999999999965 68899999886432211  123466889999999999999999999988776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  ++||||||+|||+++++.+||+|||+++...... 
T Consensus        81 e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~  156 (291)
T cd05612          81 EYVPGGELFSYLRN--SGRFSNSTGLFYASEIVCALEYLHSKE--IVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTW  156 (291)
T ss_pred             eCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHeEECCCCCEEEEecCcchhccCCcc
Confidence            99999999999863  346889999999999999999999998  9999999999999999999999999988654321 


Q ss_pred             -----hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 007711          460 -----MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  534 (592)
Q Consensus       460 -----~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (592)
                           ..+.+|+......++.++|||||||++|||+||+.||..  ....+.......+...           ++.....
T Consensus       157 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~--~~~~~~~~~i~~~~~~-----------~~~~~~~  223 (291)
T cd05612         157 TLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFD--DNPFGIYEKILAGKLE-----------FPRHLDL  223 (291)
T ss_pred             cccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCcC-----------CCccCCH
Confidence                 123334433334468899999999999999999999953  3333333333332111           1122235


Q ss_pred             HHHHHHHHhcccCCCCCCC-----HHHHHH
Q 007711          535 TLGELIKSCVRADPEKRPT-----MRDIAA  559 (592)
Q Consensus       535 ~l~~l~~~Cl~~dP~~RPs-----~~ev~~  559 (592)
                      .+.+++.+||+.||.+||+     ++|+++
T Consensus       224 ~~~~li~~~l~~dp~~R~~~~~~~~~~~l~  253 (291)
T cd05612         224 YAKDLIKKLLVVDRTRRLGNMKNGADDVKN  253 (291)
T ss_pred             HHHHHHHHHcCCCHHHccCCccCCHHHHhc
Confidence            6889999999999999995     777664

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=2.5e-36  Score=310.35  Aligned_cols=238  Identities=16%  Similarity=0.251  Sum_probs=185.6

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|+.. ++..+|+|.+.......  ....+.+.+|++++++++||||+++++++...+  ..++|
T Consensus        21 ~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv   96 (329)
T PTZ00263         21 EMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILK--MKQVQHVAQEKSILMELSHPFIVNMMCSFQDEN--RVYFL   96 (329)
T ss_pred             EEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhh--hhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCC--EEEEE
Confidence            45688999999999999975 58899999886432211  123467889999999999999999999998877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++......
T Consensus        97 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~  172 (329)
T PTZ00263         97 LEFVVGGELFTHLRK--AGRFPNDVAKFYHAELVLAFEYLHSKD--IIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT  172 (329)
T ss_pred             EcCCCCChHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHEEECCCCCEEEeeccCceEcCCCc
Confidence            999999999998863  346788888899999999999999998  9999999999999999999999999987653222


Q ss_pred             ------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          460 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       460 ------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                            ..+.+||......++.++|||||||++|||+||+.||..  ....+.......+...+           +....
T Consensus       173 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~--~~~~~~~~~i~~~~~~~-----------p~~~~  239 (329)
T PTZ00263        173 FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFD--DTPFRIYEKILAGRLKF-----------PNWFD  239 (329)
T ss_pred             ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCC--CCHHHHHHHHhcCCcCC-----------CCCCC
Confidence                  223344444444468899999999999999999999943  33333333333221111           11123


Q ss_pred             HHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRPT-----MRDIAA  559 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs-----~~ev~~  559 (592)
                      ..+.+++.+||+.||.+||+     +++++.
T Consensus       240 ~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  270 (329)
T PTZ00263        240 GRARDLVKGLLQTDHTKRLGTLKGGVADVKN  270 (329)
T ss_pred             HHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence            46889999999999999997     677653

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=6.3e-36  Score=313.70  Aligned_cols=254  Identities=19%  Similarity=0.303  Sum_probs=190.6

Q ss_pred             HHHHHHHhhhhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeee
Q 007711          293 SELEAACEDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLI  365 (592)
Q Consensus       293 ~el~~~~~~~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~  365 (592)
                      +++......+.+.||+|+||.||+|++.      .+..||+|++.....    ....+.+.+|++++.++. ||||++++
T Consensus        32 ~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~----~~~~~~~~~E~~~l~~l~~H~niv~~~  107 (401)
T cd05107          32 WEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTAR----SSEKQALMSELKIMSHLGPHLNIVNLL  107 (401)
T ss_pred             ceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCC----hhHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence            3444444455689999999999999864      245799998864321    223457889999999997 99999999


Q ss_pred             EEEecCCCcceEEEEeeCCCCCchhhccccC-------------------------------------------------
Q 007711          366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE-------------------------------------------------  396 (592)
Q Consensus       366 g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~-------------------------------------------------  396 (592)
                      |+|....  ..++|+||+++|+|.++++...                                                 
T Consensus       108 ~~~~~~~--~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (401)
T cd05107         108 GACTKGG--PIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDE  185 (401)
T ss_pred             EEEccCC--CcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCcc
Confidence            9998876  5799999999999999886421                                                 


Q ss_pred             -----------------------------------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEee
Q 007711          397 -----------------------------------------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHN  429 (592)
Q Consensus       397 -----------------------------------------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~  429 (592)
                                                                     ...++|....+++.+++.||+|||+.+  ++||
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHr  263 (401)
T cd05107         186 SADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKN--CVHR  263 (401)
T ss_pred             ccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC--cCcc
Confidence                                                           124678888999999999999999988  9999


Q ss_pred             CcCCCCeEEcCCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCccc
Q 007711          430 YLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYL  497 (592)
Q Consensus       430 dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~  497 (592)
                      ||||+|||+++++.+||+|||+++.......           .+.+++......++.++|||||||++|||++ |+.||.
T Consensus       264 dlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~  343 (401)
T cd05107         264 DLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYP  343 (401)
T ss_pred             cCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999999876432111           1122222222336788999999999999998 899984


Q ss_pred             CCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          498 VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      ...  ..+.....+......         ..+..++.++.+++.+||+.+|++||+++||++.|++++
T Consensus       344 ~~~--~~~~~~~~~~~~~~~---------~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~~  400 (401)
T cd05107         344 ELP--MNEQFYNAIKRGYRM---------AKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL  400 (401)
T ss_pred             CCC--chHHHHHHHHcCCCC---------CCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence            322  222222222221111         112223457999999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=7e-36  Score=300.44  Aligned_cols=256  Identities=21%  Similarity=0.299  Sum_probs=188.9

Q ss_pred             hhhcccCcCCCeEEEEEEe-----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          301 DFSNVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      .+.+.||+|+||.||.+.+     .++..+|+|.+.....    ......|.+|++++++++||||++++++|.......
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (283)
T cd05080           7 KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECG----QQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKG   82 (283)
T ss_pred             eeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccC----hHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCce
Confidence            3457899999999988653     3577899998754321    224567899999999999999999999987654335


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .+++|||+++|+|.+++..   ..+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++..
T Consensus        83 ~~lv~e~~~~~~l~~~~~~---~~l~~~~~~~i~~~l~~~l~~lH~~~--i~H~dlkp~Nili~~~~~~~l~dfg~~~~~  157 (283)
T cd05080          83 LQLIMEYVPLGSLRDYLPK---HKLNLAQLLLFAQQICEGMAYLHSQH--YIHRDLAARNVLLDNDRLVKIGDFGLAKAV  157 (283)
T ss_pred             EEEEecCCCCCCHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHCC--eeccccChheEEEcCCCcEEEeeccccccc
Confidence            7899999999999999863   35899999999999999999999998  999999999999999999999999998865


Q ss_pred             hhhhhh------------hcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcC--CCCCcccc
Q 007711          456 AMAEMA------------ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG--VQPLQQFV  521 (592)
Q Consensus       456 ~~~~~~------------~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~--~~~~~~~~  521 (592)
                      ......            +.+++......++.++||||||+++|||+||+.||........+........  ........
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (283)
T cd05080         158 PEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELL  237 (283)
T ss_pred             CCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhh
Confidence            432211            1223333333468899999999999999999999853222111111000000  00000111


Q ss_pred             CCC-CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          522 DPT-LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       522 ~~~-~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      +.. ....+...+.++.+++.+||+.+|++||+++++++.|+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         238 ERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             hcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            111 01123344568999999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=1.7e-35  Score=294.84  Aligned_cols=248  Identities=23%  Similarity=0.332  Sum_probs=192.5

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+. .++..+++|.+.......  ......|.+|++++++++||||+++++++...+  ..++|+
T Consensus         6 i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   81 (267)
T cd08228           6 IEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMD--AKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDN--ELNIVL   81 (267)
T ss_pred             eeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCC--HHHHHHHHHHHHHHHhCCCcceeeeeeeEEECC--eEEEEE
Confidence            457899999999999995 468899999876433222  344567899999999999999999999988776  678999


Q ss_pred             eeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          381 EYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||+++|+|.+++...  ....++......++.+++.|++|||+.+  ++|+||||+||+++.++.++|+|||++......
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~  159 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRR--VMHRDIKPANVFITATGVVKLGDLGLGRFFSSK  159 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCC--eeCCCCCHHHEEEcCCCCEEECccccceeccch
Confidence            999999999887532  2345788889999999999999999998  999999999999999999999999998765432


Q ss_pred             hh---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          459 EM---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       459 ~~---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      ..         .+.+++.......+.++||||||+++|||+||+.||........++........       .+..  ..
T Consensus       160 ~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~-------~~~~--~~  230 (267)
T cd08228         160 TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCD-------YPPL--PT  230 (267)
T ss_pred             hHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcCC-------CCCC--Ch
Confidence            21         112233333333577899999999999999999999654444444443322111       1111  12


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      ...+..+.+++.+||+.+|++||++.+|++.|+.+
T Consensus       231 ~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~  265 (267)
T cd08228         231 EHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQM  265 (267)
T ss_pred             hhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHh
Confidence            23446789999999999999999999999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.6e-35  Score=295.83  Aligned_cols=247  Identities=23%  Similarity=0.388  Sum_probs=188.3

Q ss_pred             hhcccCcCCCeEEEEEEeCC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----
Q 007711          302 FSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----  373 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----  373 (592)
                      +.+.||+|+||.||+|....    +..+|+|.+.....   .......|.+|++.+++++|+||+++++++.....    
T Consensus         3 ~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   79 (273)
T cd05035           3 LGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIH---TYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKI   79 (273)
T ss_pred             cccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcC---CHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccC
Confidence            45789999999999998642    36799998764322   12335679999999999999999999999876442    


Q ss_pred             cceEEEEeeCCCCCchhhcccc----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecC
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIK----ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  449 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~----~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~Df  449 (592)
                      ...++++||+++|+|..++...    ....+++.....++.+++.||+|||+.+  ++||||||+||++++++.+||+||
T Consensus        80 ~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~--i~H~dlkp~Nil~~~~~~~kl~df  157 (273)
T cd05035          80 PKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRN--FIHRDLAARNCMLREDMTVCVADF  157 (273)
T ss_pred             cccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCC--eeccccchheEEECCCCeEEECCc
Confidence            1368999999999999887532    2346899999999999999999999988  999999999999999999999999


Q ss_pred             Ccchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCC
Q 007711          450 SFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL  517 (592)
Q Consensus       450 Gla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~  517 (592)
                      |+++.......           .+.+++......++.++|||||||++|||++ |..||..  ....+.......+ .. 
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~--~~~~~~~~~~~~~-~~-  233 (273)
T cd05035         158 GLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPG--VENHEIYDYLRHG-NR-  233 (273)
T ss_pred             cceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcC-CC-
Confidence            99886532211           1122232233346789999999999999999 8899843  2223333322222 11 


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                              ...+..++.++.+++.+||+.||++||++.|+++.|++++
T Consensus       234 --------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~~  273 (273)
T cd05035         234 --------LKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENIL  273 (273)
T ss_pred             --------CCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhhC
Confidence                    1112334567999999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=8.5e-36  Score=295.94  Aligned_cols=242  Identities=24%  Similarity=0.390  Sum_probs=189.8

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ..++.+.||+|+||.||+|..+++..+++|.+.....      ..++|.+|++++++++|+|++++++++...   ..++
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~------~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~---~~~l   77 (260)
T cd05070           7 SLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM------SPESFLEEAQIMKKLRHDKLVQLYAVVSEE---PIYI   77 (260)
T ss_pred             HhhhhheeccccCceEEEEEecCCceeEEEEecCCCC------CHHHHHHHHHHHHhcCCCceEEEEeEECCC---CcEE
Confidence            3456688999999999999988888899998764321      235799999999999999999999988543   4689


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      +|||+++++|.++++......+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++.....
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~--i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~  155 (260)
T cd05070          78 VTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMN--YIHRDLRSANILVGDGLVCKIADFGLARLIEDN  155 (260)
T ss_pred             EEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCccceEEEeCCceEEeCCceeeeeccCc
Confidence            999999999999987655566899999999999999999999998  999999999999999999999999998765322


Q ss_pred             hh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          459 EM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       459 ~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      ..          .+.+++.....+++.++||||||+++|||++ |+.||...  ...+........ ...         .
T Consensus       156 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~--~~~~~~~~~~~~-~~~---------~  223 (260)
T cd05070         156 EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM--NNREVLEQVERG-YRM---------P  223 (260)
T ss_pred             ccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHcC-CCC---------C
Confidence            11          1222333233346789999999999999999 89999532  223333222211 111         1


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      .+...+..+.+++.+||+.+|++|||+.++.+.|++
T Consensus       224 ~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         224 CPQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             CCCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            122334679999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=6.6e-36  Score=299.98  Aligned_cols=245  Identities=22%  Similarity=0.368  Sum_probs=190.3

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  372 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  372 (592)
                      +..+.+.||+|+||.||+|...+      +..+++|.+.....    ....+.|.+|++++++++|+||+++++++....
T Consensus         6 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   81 (280)
T cd05049           6 TIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETAS----NDARKDFEREAELLTNFQHENIVKFYGVCTEGD   81 (280)
T ss_pred             HhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCC----HHHHHHHHHHHHHHHhcCCCCchheeeEEecCC
Confidence            44556889999999999998643      46889998753321    224578999999999999999999999998876


Q ss_pred             CcceEEEEeeCCCCCchhhccccC------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKE------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE  440 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~  440 (592)
                        ..++||||+++|+|.++++...            ...+++.....++.+++.|++|||+.+  ++||||||+||+++.
T Consensus        82 --~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~--i~h~dlkp~nili~~  157 (280)
T cd05049          82 --PPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQH--FVHRDLATRNCLVGY  157 (280)
T ss_pred             --CeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC--eeccccccceEEEcC
Confidence              6799999999999999986431            245788999999999999999999998  999999999999999


Q ss_pred             CCceEEecCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHH
Q 007711          441 DYAAKLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAA  508 (592)
Q Consensus       441 ~~~~ki~DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~  508 (592)
                      ++.+||+|||+++......           ..+.+|+......++.++|||||||++|||++ |+.||...  ...+...
T Consensus       158 ~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~--~~~~~~~  235 (280)
T cd05049         158 DLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGL--SNEEVIE  235 (280)
T ss_pred             CCeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCC--CHHHHHH
Confidence            9999999999987542111           11233444444457889999999999999999 99998432  2233333


Q ss_pred             HHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      ....+.  ..        ..+...+..+.+++.+||+.||++||++.|+++.|++
T Consensus       236 ~~~~~~--~~--------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~~  280 (280)
T cd05049         236 CITQGR--LL--------QRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK  280 (280)
T ss_pred             HHHcCC--cC--------CCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhhC
Confidence            322221  10        1122334578999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-36  Score=331.31  Aligned_cols=256  Identities=25%  Similarity=0.376  Sum_probs=202.2

Q ss_pred             HHHHHHHHhhhhcccCcCCCeEEEEEEeC----C----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCcee
Q 007711          292 RSELEAACEDFSNVIGSSPIGTVYKGTLS----N----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFV  362 (592)
Q Consensus       292 ~~el~~~~~~~~~~lG~G~~g~Vy~g~~~----~----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv  362 (592)
                      .+|+......+.+.+|+|.||.|++|...    .    ...||||.++....    ....+.+..|+++|+.+ +|+||+
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~----~~~~~~~~~El~~m~~~g~H~niv  365 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENAS----SSEKKDLMSELNVLKELGKHPNIV  365 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccC----cHHHHHHHHHHHHHHHhcCCcchh
Confidence            45555555556779999999999999853    1    35688887754332    23567899999999999 699999


Q ss_pred             eeeEEEecCCCcceEEEEeeCCCCCchhhccccC------------C--CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEe
Q 007711          363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE------------S--EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH  428 (592)
Q Consensus       363 ~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~------------~--~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH  428 (592)
                      .++|+|..++  ..++|.||++.|+|.++++...            .  ..+.....+.++.|||.|++||++..  +||
T Consensus       366 ~llG~~t~~~--~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~--~vH  441 (609)
T KOG0200|consen  366 NLLGACTQDG--PLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVP--CVH  441 (609)
T ss_pred             hheeeeccCC--ceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCC--ccc
Confidence            9999999966  5699999999999999997544            0  23888999999999999999999988  999


Q ss_pred             eCcCCCCeEEcCCCceEEecCCcchhhhhhhhhh------cccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCc
Q 007711          429 NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA------TSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLP  495 (592)
Q Consensus       429 ~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~~~------~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P  495 (592)
                      |||.+||||+.++..+||+|||++|.........      +-|..|++||      ++.|||||||||+||||+| |..|
T Consensus       442 RDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~P  521 (609)
T KOG0200|consen  442 RDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTP  521 (609)
T ss_pred             hhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCC
Confidence            9999999999999999999999999654332211      1233455555      7999999999999999999 9999


Q ss_pred             ccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          496 YLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      |.. -....+... ++.....         ...|..|..+++++|+.||+.+|++||+|.++++.++..+.
T Consensus       522 Yp~-~~~~~~l~~-~l~~G~r---------~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~l~  581 (609)
T KOG0200|consen  522 YPG-IPPTEELLE-FLKEGNR---------MEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKHLQ  581 (609)
T ss_pred             CCC-CCcHHHHHH-HHhcCCC---------CCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHH
Confidence            943 111333322 3333222         23466677899999999999999999999999999999654

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=1.2e-35  Score=294.28  Aligned_cols=241  Identities=24%  Similarity=0.384  Sum_probs=189.5

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||.||++... |..+++|.....       ...+.|.+|+.++++++|+|++++++++...+. ..++++
T Consensus         9 ~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~-------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~-~~~lv~   79 (256)
T cd05082           9 KLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND-------ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVT   79 (256)
T ss_pred             eeeeeecccCCCeEEEEEEc-CCcEEEEEeCCC-------chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCC-ceEEEE
Confidence            35678999999999999874 677888876422       124578999999999999999999998765432 468999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++|+|.++++......+++..+.+++.+++.|++|||+++  ++||||||+||++++++.+||+|||+++.......
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~  157 (256)
T cd05082          80 EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD  157 (256)
T ss_pred             ECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EeccccchheEEEcCCCcEEecCCccceeccccCC
Confidence            9999999999987655556899999999999999999999998  99999999999999999999999999876532221


Q ss_pred             ------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          461 ------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       461 ------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                            .+.+++......++.++||||||+++|||++ |+.||.  .....+.......+ ..      +   ..+..++
T Consensus       158 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~--~~~~~~~~~~~~~~-~~------~---~~~~~~~  225 (256)
T cd05082         158 TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYP--RIPLKDVVPRVEKG-YK------M---DAPDGCP  225 (256)
T ss_pred             CCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCC--CCCHHHHHHHHhcC-CC------C---CCCCCCC
Confidence                  2233444444457889999999999999998 999984  33344433333221 11      0   1122344


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      ..+.+++.+||+.+|++||++.++++.|+++
T Consensus       226 ~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         226 PVVYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             HHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence            6789999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=2e-35  Score=295.24  Aligned_cols=246  Identities=20%  Similarity=0.331  Sum_probs=184.4

Q ss_pred             hhcccCcCCCeEEEEEEeCCCc---EEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC----Cc
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGV---EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE----PF  374 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~---~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~----~~  374 (592)
                      +.+.||+|+||.||+|.+.+..   .+|+|.+.....   .....+.|.+|++++++++|+||++++++|....    ..
T Consensus         3 i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   79 (272)
T cd05075           3 LGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAIC---TRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYP   79 (272)
T ss_pred             cccccCcccCceEEEeEEccCCCeeeEEEEecccCcC---CHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCC
Confidence            4578999999999999975432   578887654321   1234567899999999999999999999986432    11


Q ss_pred             ceEEEEeeCCCCCchhhcccc----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCC
Q 007711          375 TRMMVFEYAPNGTLFEHIHIK----ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS  450 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~----~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfG  450 (592)
                      ..++++||+++|+|.+++...    ....+++.....++.|++.|++|||+++  |+||||||+|||+++++.+||+|||
T Consensus        80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~kl~Dfg  157 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKS--FIHRDLAARNCMLNENMNVCVADFG  157 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCC--eeccccchhheEEcCCCCEEECCCC
Confidence            358999999999998877421    2345889999999999999999999988  9999999999999999999999999


Q ss_pred             cchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCc
Q 007711          451 FWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQ  518 (592)
Q Consensus       451 la~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~  518 (592)
                      +++.......           .+.+++......++.++||||||+++|||++ |+.||..  ....+.......+ ... 
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~--~~~~~~~~~~~~~-~~~-  233 (272)
T cd05075         158 LSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPG--VENSEIYDYLRQG-NRL-  233 (272)
T ss_pred             cccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHcC-CCC-
Confidence            9886542211           1112222223346889999999999999999 8899843  2222322222221 111 


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       519 ~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                              ..+...+..+.+++.+||+.||++||++.++++.|+++
T Consensus       234 --------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         234 --------KQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             --------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                    11223345689999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=8.4e-36  Score=299.89  Aligned_cols=244  Identities=26%  Similarity=0.415  Sum_probs=186.5

Q ss_pred             hhhhcccCcCCCeEEEEEEe-----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  374 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  374 (592)
                      ..+.+.||+|+||.||+|.+     ..+..+++|.+....    ......+|.+|++++++++|+||+++++++....  
T Consensus         7 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--   80 (283)
T cd05090           7 VRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDIN----NPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQ--   80 (283)
T ss_pred             ceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCC----CHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCC--
Confidence            34568899999999999985     245788888775322    1234467899999999999999999999998776  


Q ss_pred             ceEEEEeeCCCCCchhhccccC---------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKE---------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT  439 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~---------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~  439 (592)
                      ..++||||+++|+|.+++....               ...+++...+.++.+++.|++|||+++  ++||||||+|||++
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~--i~H~dlkp~nili~  158 (283)
T cd05090          81 PVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHF--FVHKDLAARNILIG  158 (283)
T ss_pred             ceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcC--eehhccccceEEEc
Confidence            5699999999999999885221               235788999999999999999999998  99999999999999


Q ss_pred             CCCceEEecCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHH
Q 007711          440 EDYAAKLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA  507 (592)
Q Consensus       440 ~~~~~ki~DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~  507 (592)
                      +++.+||+|||+++......           ..+.+++......++.++|||||||++|||+| |..||...  ...+..
T Consensus       159 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~--~~~~~~  236 (283)
T cd05090         159 EQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGF--SNQEVI  236 (283)
T ss_pred             CCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCC--CHHHHH
Confidence            99999999999997653211           01223333333346889999999999999999 99998432  222222


Q ss_pred             HHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      ...... ...         ..+..++..+.+++.+||+.||++||++.++.+.|..
T Consensus       237 ~~~~~~-~~~---------~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         237 EMVRKR-QLL---------PCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             HHHHcC-CcC---------CCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence            222211 111         1122344578999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-35  Score=305.54  Aligned_cols=241  Identities=20%  Similarity=0.304  Sum_probs=191.6

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.+.||+|+||.|+.|.. ..+..||+|++.............+.+.+|+.++++++ ||||++++.++....  ..+
T Consensus        19 y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~--~~~   96 (370)
T KOG0583|consen   19 YELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT--KIY   96 (370)
T ss_pred             eeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC--eEE
Confidence            34567899999999999985 46899999966543222111134456678999999999 999999999998877  689


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC-CceEEecCCcchhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIA  456 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~-~~~ki~DfGla~~~~  456 (592)
                      +||||+.+|+|++++..  ...+.......+..|++.|++|||+++  |+||||||+|||+|.+ +++||+|||++....
T Consensus        97 ivmEy~~gGdL~~~i~~--~g~l~E~~ar~~F~Qlisav~y~H~~g--i~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~  172 (370)
T KOG0583|consen   97 IVMEYCSGGDLFDYIVN--KGRLKEDEARKYFRQLISAVAYCHSRG--IVHRDLKPENILLDGNEGNLKLSDFGLSAISP  172 (370)
T ss_pred             EEEEecCCccHHHHHHH--cCCCChHHHHHHHHHHHHHHHHHHhCC--EeeCCCCHHHEEecCCCCCEEEeccccccccC
Confidence            99999999999999974  567888899999999999999999999  9999999999999999 999999999999772


Q ss_pred             -h--------hhhhhcccccCCCCC-C-CCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          457 -M--------AEMAATSKKLSSAPS-A-SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       457 -~--------~~~~~~~~~~~~~~~-~-s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                       .        +..++.+||...... | ..++||||+||+||.|++|+.||+.  .........+..+...+...++   
T Consensus       173 ~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d--~~~~~l~~ki~~~~~~~p~~~~---  247 (370)
T KOG0583|consen  173 GEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDD--SNVPNLYRKIRKGEFKIPSYLL---  247 (370)
T ss_pred             CCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCC--ccHHHHHHHHhcCCccCCCCcC---
Confidence             1        223445555544433 4 5789999999999999999999954  4444444444444333322221   


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIA  558 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~  558 (592)
                             ..++..++.+|+..||.+|+++.+++
T Consensus       248 -------S~~~~~Li~~mL~~~P~~R~t~~~i~  273 (370)
T KOG0583|consen  248 -------SPEARSLIEKMLVPDPSTRITLLEIL  273 (370)
T ss_pred             -------CHHHHHHHHHHcCCCcccCCCHHHHh
Confidence                   45788999999999999999999999

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.6e-35  Score=293.33  Aligned_cols=237  Identities=22%  Similarity=0.362  Sum_probs=185.2

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.+.||+|+||.||+|.++++..+++|.+.....      ...+|.+|++++++++|+||+++++++....  ..++|+|
T Consensus         8 ~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~e   79 (256)
T cd05059           8 FLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM------SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQR--PIFIVTE   79 (256)
T ss_pred             hhhhhccCCCceEEEeEecCCccEEEEEeccCCC------CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCC--ceEEEEe
Confidence            5678999999999999987777899998753221      2356889999999999999999999998776  5799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh-
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-  460 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~-  460 (592)
                      |+++++|.++++... ..++|.....++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++....... 
T Consensus        80 ~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~  156 (256)
T cd05059          80 YMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYLESNG--FIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYT  156 (256)
T ss_pred             cCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCC--cccccccHhhEEECCCCcEEECCcccceeccccccc
Confidence            999999999986433 36899999999999999999999998  99999999999999999999999999876532211 


Q ss_pred             ---------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          461 ---------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       461 ---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                               .+.+++......++.++|||||||++||++| |+.||...  ...+......... .      .   ..+.
T Consensus       157 ~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~--~~~~~~~~~~~~~-~------~---~~~~  224 (256)
T cd05059         157 SSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERF--SNSEVVESVSAGY-R------L---YRPK  224 (256)
T ss_pred             ccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCC--CHHHHHHHHHcCC-c------C---CCCC
Confidence                     1222333333346789999999999999999 89998532  2222222222111 0      0   1112


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAAIL  561 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L  561 (592)
                      .++.++.+++.+||+.+|++||++.|+++.|
T Consensus       225 ~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         225 LAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             CCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence            2446799999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=9.8e-36  Score=296.80  Aligned_cols=244  Identities=20%  Similarity=0.346  Sum_probs=188.8

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCc---EEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGV---EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~---~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +..+.||+|+||.||+|+.. ++.   .+++|.+....    .....++|..|++++++++|+|++++++++...+  ..
T Consensus         8 ~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   81 (268)
T cd05063           8 TKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGY----TEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFK--PA   81 (268)
T ss_pred             eEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccC----CHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCC--Cc
Confidence            34578999999999999974 232   67787764332    1234567999999999999999999999998877  56


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++||||+++++|.+++... ...+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++...
T Consensus        82 ~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH~~~--i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~  158 (268)
T cd05063          82 MIITEYMENGALDKYLRDH-DGEFSSYQLVGMLRGIAAGMKYLSDMN--YVHRDLAARNILVNSNLECKVSDFGLSRVLE  158 (268)
T ss_pred             EEEEEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccccchhhEEEcCCCcEEECCCccceecc
Confidence            9999999999999998643 356899999999999999999999998  9999999999999999999999999987653


Q ss_pred             hhhh------------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          457 MAEM------------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       457 ~~~~------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ....            .+.+++......++.++|||||||++||++| |+.||...  +..++....... ...     +
T Consensus       159 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~--~~~~~~~~i~~~-~~~-----~  230 (268)
T cd05063         159 DDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDM--SNHEVMKAINDG-FRL-----P  230 (268)
T ss_pred             cccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcC--CHHHHHHHHhcC-CCC-----C
Confidence            2211            1222333333446789999999999999998 99999532  223333332211 111     1


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                          ....++..+.+++.+||+.+|++||++.+|++.|++++
T Consensus       231 ----~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~~  268 (268)
T cd05063         231 ----APMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKLL  268 (268)
T ss_pred             ----CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhhC
Confidence                11233457899999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=9.5e-36  Score=299.43  Aligned_cols=244  Identities=23%  Similarity=0.370  Sum_probs=188.0

Q ss_pred             hhhhcccCcCCCeEEEEEEeCC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP  373 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  373 (592)
                      ..+.+.||+|+||.||+|...+      +..||+|.+.....    ......|.+|+.++..++||||+++++++.... 
T Consensus         7 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~-   81 (283)
T cd05091           7 VRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAE----GPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQ-   81 (283)
T ss_pred             HHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCC----HHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCC-
Confidence            3456789999999999998632      46789998763321    234567899999999999999999999998877 


Q ss_pred             cceEEEEeeCCCCCchhhcccc--------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIK--------------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT  439 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~--------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~  439 (592)
                       ..++++||+++++|.+++...              ....+++..+.+++.+++.||+|||+.+  ++||||||+||+++
T Consensus        82 -~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~g--i~H~dlkp~Nil~~  158 (283)
T cd05091          82 -PLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHH--VVHKDLATRNVLVF  158 (283)
T ss_pred             -ceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcC--ccccccchhheEec
Confidence             568999999999999887421              1235788899999999999999999998  99999999999999


Q ss_pred             CCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHH
Q 007711          440 EDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA  507 (592)
Q Consensus       440 ~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~  507 (592)
                      +++.+||+|||+++.......           .+.+|+......++.++|||||||++|||+| |..||..  ....++.
T Consensus       159 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~--~~~~~~~  236 (283)
T cd05091         159 DKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCG--YSNQDVI  236 (283)
T ss_pred             CCCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC--CCHHHHH
Confidence            999999999999876532211           1222332223346789999999999999998 8888843  3333444


Q ss_pred             HHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      ........          ...+..++..+.+++.+||+.+|++||++.+|+..|+.
T Consensus       237 ~~i~~~~~----------~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         237 EMIRNRQV----------LPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             HHHHcCCc----------CCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence            33332211          11233445678999999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=2e-35  Score=295.08  Aligned_cols=242  Identities=24%  Similarity=0.418  Sum_probs=184.0

Q ss_pred             cccCcCCCeEEEEEEeCC-Cc--EEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEE
Q 007711          304 NVIGSSPIGTVYKGTLSN-GV--EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~-~~--~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.||+|+||.||+|.+.+ +.  .+++|.+....    .....+.|.+|++++.++ +||||++++++|....  ..++|
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~--~~~lv   74 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA----SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG--YLYLA   74 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccC----CHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCC--CceEE
Confidence            368999999999999754 43  35666554221    123456789999999999 7999999999998876  56999


Q ss_pred             EeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceE
Q 007711          380 FEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAK  445 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~k  445 (592)
                      |||+++|+|.++++...              ...+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+|
T Consensus        75 ~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~--i~H~dikp~nili~~~~~~k  152 (270)
T cd05047          75 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ--FIHRDLAARNILVGENYVAK  152 (270)
T ss_pred             EEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccccceEEEcCCCeEE
Confidence            99999999999986421              235789999999999999999999988  99999999999999999999


Q ss_pred             EecCCcchhhhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCC
Q 007711          446 LSDLSFWNEIAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP  516 (592)
Q Consensus       446 i~DfGla~~~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~  516 (592)
                      |+|||+++......        ..+.+++......++.++|||||||++|||+| |+.||..  .+..+.......+ ..
T Consensus       153 l~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~--~~~~~~~~~~~~~-~~  229 (270)
T cd05047         153 IADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG--MTCAELYEKLPQG-YR  229 (270)
T ss_pred             ECCCCCccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccc--cCHHHHHHHHhCC-CC
Confidence            99999986332111        11223333333446889999999999999997 9999943  2333333322211 11


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      .         ..+......+.+++.+||+.+|.+||++.+++..|++++
T Consensus       230 ~---------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~  269 (270)
T cd05047         230 L---------EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML  269 (270)
T ss_pred             C---------CCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence            1         112223456889999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=1.2e-35  Score=295.43  Aligned_cols=245  Identities=23%  Similarity=0.365  Sum_probs=189.9

Q ss_pred             HHhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          298 ACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       298 ~~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      ..+.+.+.||+|+||.||+|.+.+...|++|.+.....      ..++|.+|++++++++|+||+++++++...   ..+
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~------~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~---~~~   76 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM------SPEAFLQEAQVMKKLRHEKLVQLYAVVSEE---PIY   76 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc------CHHHHHHHHHHHHhCCCCCcceEEEEECCC---CcE
Confidence            34556788999999999999987777899988764221      235789999999999999999999987543   358


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +||||+++|+|.++++......++|..+..++.+++.||+|||+.+  ++||||||+||++++++.+||+|||.++....
T Consensus        77 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~--i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~  154 (262)
T cd05071          77 IVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIED  154 (262)
T ss_pred             EEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCC--ccccccCcccEEEcCCCcEEeccCCceeeccc
Confidence            9999999999999997544556899999999999999999999988  99999999999999999999999999876542


Q ss_pred             hhh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          458 AEM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       458 ~~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      ...          .+.+++......++.++||||||+++|||+| |+.||....  ..+........ ...         
T Consensus       155 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~--~~~~~~~~~~~-~~~---------  222 (262)
T cd05071         155 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQVERG-YRM---------  222 (262)
T ss_pred             cccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC--hHHHHHHHhcC-CCC---------
Confidence            221          1222333233346789999999999999999 888884322  22222222211 100         


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      ......+..+.+++.+||+.+|++||++.++.+.|++..
T Consensus       223 ~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~~  261 (262)
T cd05071         223 PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF  261 (262)
T ss_pred             CCccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHhc
Confidence            112334567899999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=5.4e-36  Score=301.42  Aligned_cols=251  Identities=20%  Similarity=0.298  Sum_probs=185.6

Q ss_pred             hhcccCcCCCeEEEEEEeC-----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          302 FSNVIGSSPIGTVYKGTLS-----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-----~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.+.||+|+||.||++.++     ++..|++|.+....     ....+.|.+|++++++++|+||+++++++...+....
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   82 (284)
T cd05081           8 FIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST-----AEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   82 (284)
T ss_pred             eeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCC-----HHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCce
Confidence            4578999999999999853     57789999875432     2345678999999999999999999998865443357


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|+||+++|+|.+++... ...++|..+..++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++...
T Consensus        83 ~lv~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~l~~aL~~LH~~~--i~H~dlkp~nili~~~~~~~l~dfg~~~~~~  159 (284)
T cd05081          83 RLVMEYLPYGSLRDYLQKH-RERLDHRKLLLYASQICKGMEYLGSKR--YVHRDLATRNILVESENRVKIGDFGLTKVLP  159 (284)
T ss_pred             EEEEEecCCCCHHHHHHhc-CcCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCCHhhEEECCCCeEEECCCccccccc
Confidence            8999999999999998632 345899999999999999999999998  9999999999999999999999999988654


Q ss_pred             hhhh------------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCc------
Q 007711          457 MAEM------------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ------  518 (592)
Q Consensus       457 ~~~~------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~------  518 (592)
                      ....            .+.+++......++.++|||||||++|||++|..|+.....   .+... ........      
T Consensus       160 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~  235 (284)
T cd05081         160 QDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPA---EFMRM-MGNDKQGQMIVYHL  235 (284)
T ss_pred             CCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcch---hhhhh-cccccccccchHHH
Confidence            2211            11223332333467889999999999999998776532111   11100 00000000      


Q ss_pred             -cccC-CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          519 -QFVD-PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       519 -~~~~-~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                       .... ......+...+..+.+++.+||+.+|++|||+.|+++.|+.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         236 IELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             HHHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence             0000 000111223446799999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=1.1e-35  Score=305.94  Aligned_cols=247  Identities=15%  Similarity=0.221  Sum_probs=183.0

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+.||+|+||.||+++.. ++..+|+|.+.....    ......|.+|++++++++|+||+++++++...+  ..++||
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   82 (331)
T cd06649           9 RISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIK----PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--EISICM   82 (331)
T ss_pred             EEEeecCCCCEEEEEEEECCCCcEEEEEEeecccC----HHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC--EEEEEe
Confidence            4578999999999999965 578888888764321    234567999999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++..  ...+++.....++.+++.|+.|||+.+ .|+||||||+|||++.++.+||+|||+++...... 
T Consensus        83 e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~-~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  159 (331)
T cd06649          83 EHMDGGSLDQVLKE--AKRIPEEILGKVSIAVLRGLAYLREKH-QIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA  159 (331)
T ss_pred             ecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHhhcC-CEEcCCCChhhEEEcCCCcEEEccCccccccccccc
Confidence            99999999999864  345889999999999999999999752 29999999999999999999999999987653221 


Q ss_pred             ------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcC----CCCCcc----------
Q 007711          460 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG----VQPLQQ----------  519 (592)
Q Consensus       460 ------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~----~~~~~~----------  519 (592)
                            ..+.+++......++.++|||||||++|||+||+.||....  ..+........    ......          
T Consensus       160 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (331)
T cd06649         160 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPD--AKELEAIFGRPVVDGEEGEPHSISPRPRPPG  237 (331)
T ss_pred             ccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHhcccccccccCCccccCccccccc
Confidence                  12233333333447889999999999999999999995322  22221111000    000000          


Q ss_pred             ----------------------ccCCCCCCC-CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          520 ----------------------FVDPTLSSF-DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       520 ----------------------~~~~~~~~~-~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                            +........ ......++.+++.+||+.||++|||++|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~  300 (331)
T cd06649         238 RPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMN  300 (331)
T ss_pred             ccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhc
Confidence                                  000000000 0123457899999999999999999999976

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=8.4e-36  Score=305.65  Aligned_cols=235  Identities=17%  Similarity=0.218  Sum_probs=181.6

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      +.||+|+||.||+++. .+|..||+|.+.......  ......+.+|++++++++||||+++++++...+  ..++||||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~--~~~lv~E~   76 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIA--KDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD--RLCFVMEY   76 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hHHHHHHHHHHHHHHhCCCCCCcceeeEEecCC--EEEEEEeC
Confidence            3699999999999985 468899999886543211  223456788999999999999999999998776  67999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh---
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---  459 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~---  459 (592)
                      +++|+|..++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++......   
T Consensus        77 ~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~  152 (323)
T cd05595          77 ANGGELFFHLSR--ERVFTEERARFYGAEIVSALEYLHSRD--VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM  152 (323)
T ss_pred             CCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHEEEcCCCCEEecccHHhccccCCCCcc
Confidence            999999888753  346899999999999999999999998  9999999999999999999999999987532111   


Q ss_pred             ------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          460 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       460 ------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                            ..+.+++......++.++|||||||++|||+||+.||...  +..............           ++....
T Consensus       153 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~--~~~~~~~~~~~~~~~-----------~p~~~~  219 (323)
T cd05595         153 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ--DHERLFELILMEEIR-----------FPRTLS  219 (323)
T ss_pred             ccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCC--CHHHHHHHHhcCCCC-----------CCCCCC
Confidence                  1222333333334688999999999999999999999432  223333332222111           122234


Q ss_pred             HHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      ..+.+++.+||+.||++||     ++.++++
T Consensus       220 ~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~  250 (323)
T cd05595         220 PEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  250 (323)
T ss_pred             HHHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence            5788999999999999998     7888764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-35  Score=294.41  Aligned_cols=251  Identities=23%  Similarity=0.353  Sum_probs=189.8

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc--CCCCceeeeeEEEecCC--CcceE
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK--VNHKNFVNLIGFCEEEE--PFTRM  377 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~--l~H~niv~l~g~~~~~~--~~~~~  377 (592)
                      +.++||+|.||.||||.+. ++.||||++...        ..+.|..|-++.+.  ++|+||++++++-....  ..+.+
T Consensus       214 l~eli~~Grfg~V~KaqL~-~~~VAVKifp~~--------~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eyw  284 (534)
T KOG3653|consen  214 LLELIGRGRFGCVWKAQLD-NRLVAVKIFPEQ--------EKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYW  284 (534)
T ss_pred             hHHHhhcCccceeehhhcc-CceeEEEecCHH--------HHHHHHhHHHHHhccCccchhHHHhhchhccCCcccccee
Confidence            3467999999999999995 489999988543        34678888888765  48999999999865433  23568


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-------CCCCeEeeCcCCCCeEEcCCCceEEecCC
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-------LNPPIAHNYLNSSAVHLTEDYAAKLSDLS  450 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-------~~~~ivH~dLk~~NiLl~~~~~~ki~DfG  450 (592)
                      ||+||.++|+|.++|..   ..++|....+||..+++||+|||+       .+|+|+|||||++||||..|+++-|+|||
T Consensus       285 LVt~fh~kGsL~dyL~~---ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFG  361 (534)
T KOG3653|consen  285 LVTEFHPKGSLCDYLKA---NTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFG  361 (534)
T ss_pred             EEeeeccCCcHHHHHHh---ccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccc
Confidence            99999999999999963   468999999999999999999996       35789999999999999999999999999


Q ss_pred             cchhhhhhhh-----hhcccccCCCCCC------------CCCCcchhhHHHHHHHHhCCCcc------------c---C
Q 007711          451 FWNEIAMAEM-----AATSKKLSSAPSA------------SLESNVYNFGVLLFEMVTGRLPY------------L---V  498 (592)
Q Consensus       451 la~~~~~~~~-----~~~~~~~~~~~~~------------s~ksDVwSfGvvl~El~tG~~P~------------~---~  498 (592)
                      +|..+..+..     ....+..|++||.            -.+.||||+|.|||||+++..-+            .   +
T Consensus       362 LAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG  441 (534)
T KOG3653|consen  362 LALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVG  441 (534)
T ss_pred             eeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhc
Confidence            9988753221     1223345666663            23479999999999999965332            2   1


Q ss_pred             CCCChHHHHHHHhcCCCCCccccCCCCCCCC--HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCC
Q 007711          499 DNGSLEDWAADYLSGVQPLQQFVDPTLSSFD--EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  570 (592)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~  570 (592)
                      ....+++...-..++.      ..|.+++..  ...+.-+.+.+..||..||+.|.|+.-+.+++.++....+.
T Consensus       442 ~hPt~e~mq~~VV~kK------~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~~~  509 (534)
T KOG3653|consen  442 NHPTLEEMQELVVRKK------QRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLWED  509 (534)
T ss_pred             CCCCHHHHHHHHHhhc------cCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccCCc
Confidence            1223333333222221      122222111  13356789999999999999999999999999999887754

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=4.5e-36  Score=296.41  Aligned_cols=238  Identities=24%  Similarity=0.378  Sum_probs=184.2

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      +.||+|+||.||+|... ++..+++|.+....    .......|.+|++++++++|+||++++++|....  ..++|+||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e~   74 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETL----PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ--PIYIVMEL   74 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccC----CHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCC--CeEEEEee
Confidence            36999999999999964 68889999764321    2345567999999999999999999999998876  67999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh--
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM--  460 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~--  460 (592)
                      +++++|.++++.. ...++|.....++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.......  
T Consensus        75 ~~~~~L~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~  151 (252)
T cd05084          75 VQGGDFLTFLRTE-GPRLKVKELIQMVENAAAGMEYLESKH--CIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYAS  151 (252)
T ss_pred             ccCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccccchheEEEcCCCcEEECccccCcccccccccc
Confidence            9999999998632 346899999999999999999999998  99999999999999999999999999875432111  


Q ss_pred             ---------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          461 ---------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       461 ---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                               .+.+++......++.++|||||||++||+++ |..||...  ...+........ ...         ..+.
T Consensus       152 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~--~~~~~~~~~~~~-~~~---------~~~~  219 (252)
T cd05084         152 TGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANL--SNQQTREAIEQG-VRL---------PCPE  219 (252)
T ss_pred             cCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccc--CHHHHHHHHHcC-CCC---------CCcc
Confidence                     1222333333346788999999999999998 88898422  212211111111 000         1122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                      ..+..+.+++.+||+.+|++||++.++.+.|+
T Consensus       220 ~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         220 LCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence            33457899999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=1.4e-35  Score=306.70  Aligned_cols=254  Identities=19%  Similarity=0.304  Sum_probs=189.6

Q ss_pred             HHHHhhhhcccCcCCCeEEEEEEe------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEE
Q 007711          296 EAACEDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFC  368 (592)
Q Consensus       296 ~~~~~~~~~~lG~G~~g~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~  368 (592)
                      ......+.+.||+|+||.||+|.+      ..++.||||.+.....    ......+.+|++++.++ +|+||++++++|
T Consensus         5 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~~h~niv~~~~~~   80 (343)
T cd05103           5 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT----HSEHRALMSELKILIHIGHHLNVVNLLGAC   80 (343)
T ss_pred             chhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCC----hHHHHHHHHHHHHHHhccCCccHhhhccee
Confidence            344556778999999999999974      3467899998864321    22345788999999999 689999999988


Q ss_pred             ecCCCcceEEEEeeCCCCCchhhccccC----------------------------------------------------
Q 007711          369 EEEEPFTRMMVFEYAPNGTLFEHIHIKE----------------------------------------------------  396 (592)
Q Consensus       369 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~----------------------------------------------------  396 (592)
                      ...+. ..++|+||+++|+|.++++...                                                    
T Consensus        81 ~~~~~-~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (343)
T cd05103          81 TKPGG-PLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLS  159 (343)
T ss_pred             ecCCC-ceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccc
Confidence            76542 4689999999999999886421                                                    


Q ss_pred             -------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh----
Q 007711          397 -------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE----  459 (592)
Q Consensus       397 -------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~----  459 (592)
                                   ...++|..+.+++.+++.|++|||+.+  |+||||||+||++++++++||+|||+++......    
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~  237 (343)
T cd05103         160 DVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRK--CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVR  237 (343)
T ss_pred             cchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCccCeEEEcCCCcEEEEecccccccccCcchhh
Confidence                         124688889999999999999999998  9999999999999999999999999987642111    


Q ss_pred             -------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 -------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 -------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                             ..+.+++......++.++||||||+++|||++ |..||...... .+... ........         ..+..
T Consensus       238 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~-~~~~~-~~~~~~~~---------~~~~~  306 (343)
T cd05103         238 KGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCR-RLKEGTRM---------RAPDY  306 (343)
T ss_pred             cCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCcccc-HHHHH-HHhccCCC---------CCCCC
Confidence                   01223333333346889999999999999997 99998543221 11111 11111110         00111


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ....+.+++.+||+.||++||++.|+++.|+.+++.
T Consensus       307 ~~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~~  342 (343)
T cd05103         307 TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  342 (343)
T ss_pred             CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence            224688999999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=1.3e-35  Score=304.91  Aligned_cols=235  Identities=18%  Similarity=0.215  Sum_probs=182.5

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      +.||+|+||.||++.. .++..+|+|++.......  ......+.+|+++++.++||||+++++++...+  ..++||||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~Ey   76 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIA--KDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKD--RLCFVMEY   76 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCC--EEEEEEeC
Confidence            3689999999999985 468899999886543221  233567889999999999999999999998777  67999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh----
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA----  458 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~----  458 (592)
                      +++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....    
T Consensus        77 ~~~g~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~  152 (328)
T cd05593          77 VNGGELFFHLSR--ERVFSEDRTRFYGAEIVSALDYLHSGK--IVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATM  152 (328)
T ss_pred             CCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eEecccCHHHeEECCCCcEEEecCcCCccCCCccccc
Confidence            999999888753  346899999999999999999999998  999999999999999999999999998753211    


Q ss_pred             -----hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          459 -----EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       459 -----~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                           ...+.+++......++.++|||||||++|||+||+.||..  .+..+..........           .++....
T Consensus       153 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~--~~~~~~~~~~~~~~~-----------~~p~~~~  219 (328)
T cd05593         153 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEDI-----------KFPRTLS  219 (328)
T ss_pred             ccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCC--CCHHHHHHHhccCCc-----------cCCCCCC
Confidence                 1112233333333468899999999999999999999943  233333333222211           1122234


Q ss_pred             HHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      ..+.+++.+||+.||++||     ++.|+++
T Consensus       220 ~~~~~li~~~L~~dP~~R~~~~~~~~~~il~  250 (328)
T cd05593         220 ADAKSLLSGLLIKDPNKRLGGGPDDAKEIMR  250 (328)
T ss_pred             HHHHHHHHHHcCCCHHHcCCCCCCCHHHHhc
Confidence            5688999999999999997     8888875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=2.2e-35  Score=298.11  Aligned_cols=247  Identities=19%  Similarity=0.360  Sum_probs=189.5

Q ss_pred             hhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          302 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.||+|+||.||+|...      ++..+++|.+....     ....+.|.+|++++++++|+||+++++++....  .
T Consensus         9 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~   81 (291)
T cd05094           9 LKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPT-----LAARKDFQREAELLTNLQHEHIVKFYGVCGDGD--P   81 (291)
T ss_pred             EeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCcc-----HHHHHHHHHHHHHHhcCCCCCcceEEEEEccCC--c
Confidence            4578999999999999842      34557777664322     233467999999999999999999999998776  5


Q ss_pred             eEEEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC
Q 007711          376 RMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED  441 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~  441 (592)
                      .++||||+++++|.+++....              ...++|..+.+++.+++.|++|||+.+  ++||||||+||+++++
T Consensus        82 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~--i~H~dlkp~Nil~~~~  159 (291)
T cd05094          82 LIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQH--FVHRDLATRNCLVGAN  159 (291)
T ss_pred             eEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecccCcceEEEccC
Confidence            799999999999999986421              235899999999999999999999998  9999999999999999


Q ss_pred             CceEEecCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHH
Q 007711          442 YAAKLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAAD  509 (592)
Q Consensus       442 ~~~ki~DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~  509 (592)
                      +.+||+|||+++......           ..+.+++......++.++|||||||++|||+| |+.||...  ...+....
T Consensus       160 ~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~--~~~~~~~~  237 (291)
T cd05094         160 LLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQL--SNTEVIEC  237 (291)
T ss_pred             CcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHH
Confidence            999999999987543211           11223333333446889999999999999999 99998432  22222222


Q ss_pred             HhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          510 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                      ...+.  .        ...+..++..+.+++.+||+.+|++||++.++++.|+++.+..|
T Consensus       238 ~~~~~--~--------~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~~~  287 (291)
T cd05094         238 ITQGR--V--------LERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGKATP  287 (291)
T ss_pred             HhCCC--C--------CCCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHhhcC
Confidence            22111  1        01112234578999999999999999999999999999976544

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=3.2e-35  Score=295.15  Aligned_cols=249  Identities=19%  Similarity=0.303  Sum_probs=191.9

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCC-----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSN-----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP  373 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~-----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  373 (592)
                      ...+.+.||+|+||.||+|...+     +..|++|.+...    ........+.+|+.++++++|+||+++++++...+.
T Consensus         7 ~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~----~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~   82 (280)
T cd05043           7 RVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDH----ASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGE   82 (280)
T ss_pred             heEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCC----CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC
Confidence            34456889999999999999765     678888876422    123446778999999999999999999999876432


Q ss_pred             cceEEEEeeCCCCCchhhccccCC------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEe
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKES------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS  447 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~~------~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~  447 (592)
                       ..++++||+++|+|.+++.....      ..+++..+..++.+++.||+|||+.+  ++||||||+||++++++.+||+
T Consensus        83 -~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~--i~H~di~p~nil~~~~~~~kl~  159 (280)
T cd05043          83 -PPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRG--VIHKDIAARNCVIDEELQVKIT  159 (280)
T ss_pred             -CCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccCHhhEEEcCCCcEEEC
Confidence             56899999999999999864321      46899999999999999999999988  9999999999999999999999


Q ss_pred             cCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCC
Q 007711          448 DLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ  515 (592)
Q Consensus       448 DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~  515 (592)
                      |||+++.+.....           .+.+++......++.++|||||||++||+++ |+.||...  ...++......+ .
T Consensus       160 d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~--~~~~~~~~~~~~-~  236 (280)
T cd05043         160 DNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEI--DPFEMAAYLKDG-Y  236 (280)
T ss_pred             CCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcC--CHHHHHHHHHcC-C
Confidence            9999986532211           1223333333336889999999999999999 99999532  333333322221 1


Q ss_pred             CCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          516 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      ...         .+..++.++.+++.+||+.||++||++.++++.|+++.+
T Consensus       237 ~~~---------~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~  278 (280)
T cd05043         237 RLA---------QPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDFHA  278 (280)
T ss_pred             CCC---------CCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            111         112234578999999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=2e-35  Score=304.05  Aligned_cols=250  Identities=14%  Similarity=0.217  Sum_probs=182.8

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +++.+.||+|+||.||++... ++..+++|.+.....    ......|.+|++++++++|+||++++++|...+  ..++
T Consensus         7 y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~l   80 (333)
T cd06650           7 FEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIK----PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--EISI   80 (333)
T ss_pred             hheeccccCCCCEEEEEEEECCCCcEEEEEEeecccC----HHHHHHHHHHHHHHHHCCCCcccceeEEEEECC--EEEE
Confidence            445678999999999999975 577888887754321    234567999999999999999999999998877  6899


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~-~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      ||||+++|+|.+++..  ...+++.....++.+++.|++|||+. +  ++||||||+|||+++++.+||+|||+++....
T Consensus        81 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~l~~~l~~lH~~~~--ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~  156 (333)
T cd06650          81 CMEHMDGGSLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  156 (333)
T ss_pred             EEecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhcCC--EEecCCChhhEEEcCCCCEEEeeCCcchhhhh
Confidence            9999999999999863  34578888999999999999999974 5  99999999999999999999999999876532


Q ss_pred             hh-------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHH-HHHHhcCCCCCc-----------
Q 007711          458 AE-------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDW-AADYLSGVQPLQ-----------  518 (592)
Q Consensus       458 ~~-------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~-~~~~~~~~~~~~-----------  518 (592)
                      ..       ..+.+++......++.++|||||||++|||++|+.||.......... ......+.....           
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (333)
T cd06650         157 SMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGR  236 (333)
T ss_pred             hccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccc
Confidence            21       12233444334446889999999999999999999995332111110 000000000000           


Q ss_pred             --------------------cccCCCCCCCC-HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 --------------------QFVDPTLSSFD-EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 --------------------~~~~~~~~~~~-~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                          .+........+ .....++.+++.+||+.||++||++.|++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~  298 (333)
T cd06650         237 PLSSYGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMV  298 (333)
T ss_pred             hhhhhcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhh
Confidence                                00000000000 012356889999999999999999999964

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.6e-36  Score=308.00  Aligned_cols=237  Identities=20%  Similarity=0.311  Sum_probs=197.1

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +++.||.|+.|.|-.|+. ..|+.+|||++......  .......+.+||-+|+-+.||||++++.++....  +.|+|.
T Consensus        16 LgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~--s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~--~lylvl   91 (786)
T KOG0588|consen   16 LGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSEL--SSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQ--HLYLVL   91 (786)
T ss_pred             ccccccCCCCceehhhhcccccceeEEEeecccccc--ccccccchhhhhHHHHHhcCCCeeeeeeeeccCc--eEEEEE
Confidence            456799999999999994 67999999998765322  2233456788999999999999999999999887  789999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh---
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  457 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~---  457 (592)
                      ||+++|.|++++.  ....+......++..||..|+.|+|..+  |+||||||+|+|||.+.++||+|||+|.....   
T Consensus        92 Eyv~gGELFdylv--~kG~l~e~eaa~ff~QIi~gv~yCH~~~--icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gkl  167 (786)
T KOG0588|consen   92 EYVPGGELFDYLV--RKGPLPEREAAHFFRQILDGVSYCHAFN--ICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKL  167 (786)
T ss_pred             EecCCchhHHHHH--hhCCCCCHHHHHHHHHHHHHHHHHhhhc--ceeccCCchhhhhhcccCEeeeccceeecccCCcc
Confidence            9999999999986  3467888899999999999999999999  99999999999999999999999999976533   


Q ss_pred             -----hhhhhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          458 -----AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       458 -----~~~~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                           +..+|++||..++ |+-..++||||.||||+.|+||+.||+  +..+.....+..++...+           |..
T Consensus       168 LeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFd--DdNir~LLlKV~~G~f~M-----------Ps~  234 (786)
T KOG0588|consen  168 LETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFD--DDNIRVLLLKVQRGVFEM-----------PSN  234 (786)
T ss_pred             ccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCC--CccHHHHHHHHHcCcccC-----------CCc
Confidence                 3344556665544 445889999999999999999999995  556666666666664443           333


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+.++.+|+.+++..||++|.|++||.+
T Consensus       235 Is~eaQdLLr~ml~VDp~~RiT~~eI~k  262 (786)
T KOG0588|consen  235 ISSEAQDLLRRMLDVDPSTRITTEEILK  262 (786)
T ss_pred             CCHHHHHHHHHHhccCccccccHHHHhh
Confidence            4457899999999999999999999987

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=1.4e-35  Score=307.93  Aligned_cols=233  Identities=19%  Similarity=0.273  Sum_probs=176.8

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|+||.||+|+.. +++.||+|.+....    .......|.+|++++++++|+||+++++++...+  ..++|||
T Consensus        79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e  152 (353)
T PLN00034         79 VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH----EDTVRRQICREIEILRDVNHPNVVKCHDMFDHNG--EIQVLLE  152 (353)
T ss_pred             hhhccCCCCeEEEEEEECCCCCEEEEEEEecCC----cHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCC--eEEEEEe
Confidence            467999999999999964 68899999885332    1234567999999999999999999999998776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh-
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-  460 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~-  460 (592)
                      |+++|+|.+..      ...+.....++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....... 
T Consensus       153 ~~~~~~L~~~~------~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~  224 (353)
T PLN00034        153 FMDGGSLEGTH------IADEQFLADVARQILSGIAYLHRRH--IVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDP  224 (353)
T ss_pred             cCCCCcccccc------cCCHHHHHHHHHHHHHHHHHHHHCC--EeecCCCHHHEEEcCCCCEEEcccccceeccccccc
Confidence            99999986543      2456777889999999999999998  99999999999999999999999999876532211 


Q ss_pred             --hhcccccCCCCC-----------CCCCCcchhhHHHHHHHHhCCCcccCCCC-ChHHHHHHHhcCCCCCccccCCCCC
Q 007711          461 --AATSKKLSSAPS-----------ASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       461 --~~~~~~~~~~~~-----------~s~ksDVwSfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                        .......+.+||           .+.++|||||||++|||++|+.||..... +............          ..
T Consensus       225 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~----------~~  294 (353)
T PLN00034        225 CNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQ----------PP  294 (353)
T ss_pred             ccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhccC----------CC
Confidence              111122334444           24589999999999999999999953221 1111111111110          00


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+.....++.+++.+||+.||++||++.|+++
T Consensus       295 ~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~  327 (353)
T PLN00034        295 EAPATASREFRHFISCCLQREPAKRWSAMQLLQ  327 (353)
T ss_pred             CCCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            112233457899999999999999999999986

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=2.1e-35  Score=297.80  Aligned_cols=247  Identities=21%  Similarity=0.368  Sum_probs=190.1

Q ss_pred             hhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          302 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.||+|+||.||++...      ++..+++|.+....     ......|.+|++++.+++|+||+++++++....  .
T Consensus         9 ~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~   81 (288)
T cd05093           9 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS-----DNARKDFHREAELLTNLQHEHIVKFYGVCVEGD--P   81 (288)
T ss_pred             eccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC-----HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC--c
Confidence            4578999999999999842      34567777764322     234567999999999999999999999998776  6


Q ss_pred             eEEEEeeCCCCCchhhccccC-----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCce
Q 007711          376 RMMVFEYAPNGTLFEHIHIKE-----------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAA  444 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~-----------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~  444 (592)
                      .++|+||+++|+|.+++....           ...+++..+..++.+++.||+|||+.+  ++||||||+||++++++.+
T Consensus        82 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~--i~H~dlkp~Nili~~~~~~  159 (288)
T cd05093          82 LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQH--FVHRDLATRNCLVGENLLV  159 (288)
T ss_pred             cEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecccCcceEEEccCCcE
Confidence            799999999999999886321           235899999999999999999999998  9999999999999999999


Q ss_pred             EEecCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhc
Q 007711          445 KLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLS  512 (592)
Q Consensus       445 ki~DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~  512 (592)
                      ||+|||+++......           ..+.+|+......++.++|||||||++|||+| |+.||...  ...+.......
T Consensus       160 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~--~~~~~~~~i~~  237 (288)
T cd05093         160 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQL--SNNEVIECITQ  237 (288)
T ss_pred             EeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHc
Confidence            999999987543211           11233333333446889999999999999999 89998432  22333333222


Q ss_pred             CCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          513 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                      +..  .        ..+...+.++.+++.+||+.||.+||++.++.+.|+++...++
T Consensus       238 ~~~--~--------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~~~  284 (288)
T cd05093         238 GRV--L--------QRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKASP  284 (288)
T ss_pred             CCc--C--------CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHhcc
Confidence            211  0        0111233568999999999999999999999999999986543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=2.1e-35  Score=294.23  Aligned_cols=248  Identities=24%  Similarity=0.355  Sum_probs=191.8

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|.. .++..++||.+......+  .....+|.+|+++++.++|+||+++++++...+  ..+++|
T Consensus         6 ~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~--~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~~v~   81 (267)
T cd08229           6 IEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMD--AKARADCIKEIDLLKQLNHPNVIKYYASFIEDN--ELNIVL   81 (267)
T ss_pred             hhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhh--HHHHHHHHHHHHHHHHccCCchhhhhheeEeCC--eEEEEE
Confidence            457899999999999995 578899999876433221  234568899999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          381 EYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||+++++|.+++..  .....+++.....++.++++|++|||+.+  ++|+||||+||+++.++.++|+|||+++.....
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~  159 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVFITATGVVKLGDLGLGRFFSSK  159 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEcCCCCEEECcchhhhccccC
Confidence            99999999998863  23456899999999999999999999998  999999999999999999999999998765322


Q ss_pred             hh---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          459 EM---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       459 ~~---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      ..         .+.+++......++.++||||||+++|||++|..||.....+..++.......       ..+..  ..
T Consensus       160 ~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-------~~~~~--~~  230 (267)
T cd08229         160 TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQC-------DYPPL--PS  230 (267)
T ss_pred             CcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcC-------CCCCC--Cc
Confidence            11         11223332233467789999999999999999999964443333332222111       11111  11


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      ......+.+++.+||+.||++||||.+|++.++++
T Consensus       231 ~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~  265 (267)
T cd08229         231 DHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRM  265 (267)
T ss_pred             ccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence            23446799999999999999999999999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-35  Score=306.57  Aligned_cols=246  Identities=15%  Similarity=0.180  Sum_probs=187.8

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. ++..||+|++.......  ......+.+|++++..++||||+++++++....  ..++||
T Consensus         5 ~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~--~~~lv~   80 (333)
T cd05600           5 ILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFK--LNEVRHVLTERDILTTTKSEWLVKLLYAFQDDE--YLYLAM   80 (333)
T ss_pred             EEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhh--hhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCC--EEEEEE
Confidence            4578999999999999975 58899999986543221  223467889999999999999999999998877  789999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh--
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~--  458 (592)
                      ||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus        81 e~~~g~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~~  156 (333)
T cd05600          81 EYVPGGDFRTLLNN--LGVLSEDHARFYMAEMFEAVDALHELG--YIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYAN  156 (333)
T ss_pred             eCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEECCCCCEEEEeCcCCcccccccC
Confidence            99999999999863  346889999999999999999999999  999999999999999999999999998765331  


Q ss_pred             ----hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 007711          459 ----EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  534 (592)
Q Consensus       459 ----~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (592)
                          ...+.+|+......++.++|||||||++|||+||+.||...  ...+............   ..+...........
T Consensus       157 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~--~~~~~~~~i~~~~~~~---~~~~~~~~~~~~s~  231 (333)
T cd05600         157 SVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGS--TPNETWENLKYWKETL---QRPVYDDPRFNLSD  231 (333)
T ss_pred             CcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCC--CHHHHHHHHHhccccc---cCCCCCccccccCH
Confidence                11233344433345788999999999999999999999532  2333222222111111   11111100112345


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          535 TLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       535 ~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      ++.+++.+||+.+|++||+++++++.
T Consensus       232 ~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         232 EAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             HHHHHHHHHhhChhhhcCCHHHHHhC
Confidence            78899999999999999999999863

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1.9e-35  Score=298.46  Aligned_cols=245  Identities=23%  Similarity=0.361  Sum_probs=186.4

Q ss_pred             hhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          302 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.||+|+||.||+|...      ....+++|.+....    .....+++.+|+++++.++||||++++++|...+  .
T Consensus         4 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~   77 (290)
T cd05045           4 LGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENA----SSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDG--P   77 (290)
T ss_pred             ccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCC----CHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCC--C
Confidence            3568999999999999853      22467777664322    1223467899999999999999999999998777  5


Q ss_pred             eEEEEeeCCCCCchhhcccc----------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCC
Q 007711          376 RMMVFEYAPNGTLFEHIHIK----------------------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNS  433 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~----------------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~  433 (592)
                      .++++||+++|+|.+++...                      ....+++...+.++.+++.|++|||+.+  ++||||||
T Consensus        78 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~--ivH~dikp  155 (290)
T cd05045          78 LLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMK--LVHRDLAA  155 (290)
T ss_pred             cEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCC--eehhhhhh
Confidence            68999999999999987532                      1235789999999999999999999988  99999999


Q ss_pred             CCeEEcCCCceEEecCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCC
Q 007711          434 SAVHLTEDYAAKLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNG  501 (592)
Q Consensus       434 ~NiLl~~~~~~ki~DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~  501 (592)
                      +||++++++.+||+|||+++......           ..+.+++......++.++||||||+++|||+| |+.||..  .
T Consensus       156 ~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~--~  233 (290)
T cd05045         156 RNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPG--I  233 (290)
T ss_pred             heEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCC--C
Confidence            99999999999999999987542211           11222232233346889999999999999999 9999843  2


Q ss_pred             ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          502 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      ...++....... ...         ..+...+..+.+++.+||+.+|++||++.|+++.|++++.
T Consensus       234 ~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~~  288 (290)
T cd05045         234 APERLFNLLKTG-YRM---------ERPENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKMMV  288 (290)
T ss_pred             CHHHHHHHHhCC-CCC---------CCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHHHh
Confidence            333333222111 100         1122334578899999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=3.1e-36  Score=302.00  Aligned_cols=244  Identities=20%  Similarity=0.331  Sum_probs=185.6

Q ss_pred             hhhhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP  373 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  373 (592)
                      .++.+.||+|+||.||+|.+.      .+..+|+|.+....    ......+|.+|+.+++.++|+||+++++++.... 
T Consensus         8 ~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~----~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~-   82 (277)
T cd05062           8 ITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAA----SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ-   82 (277)
T ss_pred             ceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccC----CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC-
Confidence            445688999999999999753      24578888764321    1223567899999999999999999999998776 


Q ss_pred             cceEEEEeeCCCCCchhhccccC--------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceE
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKE--------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAK  445 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~--------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~k  445 (592)
                       ..++|+||+++|+|.++++...        ...++|..++.++.+++.|++|||+.+  ++||||||+||++++++.+|
T Consensus        83 -~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--~vH~dlkp~Nil~~~~~~~~  159 (277)
T cd05062          83 -PTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANK--FVHRDLAARNCMVAEDFTVK  159 (277)
T ss_pred             -CeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCcchheEEEcCCCCEE
Confidence             5799999999999999886421        234678899999999999999999988  99999999999999999999


Q ss_pred             EecCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcC
Q 007711          446 LSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG  513 (592)
Q Consensus       446 i~DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~  513 (592)
                      |+|||+++......           ..+.+++......++.++|||||||++|||+| |+.||..  ....+........
T Consensus       160 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~--~~~~~~~~~~~~~  237 (277)
T cd05062         160 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQG--MSNEQVLRFVMEG  237 (277)
T ss_pred             ECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHcC
Confidence            99999987543211           12233343333446889999999999999999 7888843  2223333222211


Q ss_pred             CCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      .  .        ...+..++..+.+++.+||+.+|++||++.|+++.|++
T Consensus       238 ~--~--------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         238 G--L--------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             C--c--------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence            1  1        11122344578999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=2.4e-35  Score=292.75  Aligned_cols=242  Identities=23%  Similarity=0.384  Sum_probs=187.3

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ...+.+.||+|+||.||+|.+.++..+++|.+....      ...+.|.+|++++++++|+|++++++++.. .  ..++
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~------~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~--~~~~   77 (260)
T cd05069           7 SLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT------MMPEAFLQEAQIMKKLRHDKLVPLYAVVSE-E--PIYI   77 (260)
T ss_pred             HeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC------ccHHHHHHHHHHHHhCCCCCeeeEEEEEcC-C--CcEE
Confidence            344567899999999999998777788998765322      124678999999999999999999998854 3  4589


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      +|||+++|+|.++++......++|..+..++.+++.|++|||+.+  ++|+||||+||++++++.+||+|||+++.....
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~--i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~  155 (260)
T cd05069          78 VTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMN--YIHRDLRAANILVGDNLVCKIADFGLARLIEDN  155 (260)
T ss_pred             EEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EeecccCcceEEEcCCCeEEECCCccceEccCC
Confidence            999999999999997655556899999999999999999999988  999999999999999999999999998765322


Q ss_pred             hh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          459 EM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       459 ~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      ..          .+.+++......++.++|||||||++|||+| |+.||...  ...+........ ...         .
T Consensus       156 ~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~--~~~~~~~~~~~~-~~~---------~  223 (260)
T cd05069         156 EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM--VNREVLEQVERG-YRM---------P  223 (260)
T ss_pred             cccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcC-CCC---------C
Confidence            11          1222232223346788999999999999999 89998532  222222222211 110         1


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      .+...+..+.+++.+||+.||++||+++++++.|++
T Consensus       224 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         224 CPQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             CCcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence            122334678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=1.8e-35  Score=298.93  Aligned_cols=247  Identities=23%  Similarity=0.356  Sum_probs=189.8

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecC
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEE  371 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~  371 (592)
                      ..++.+.||+|+||.||++...+      ...+++|.+....    ......++.+|++++.++ +|+||+++++++...
T Consensus        13 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~----~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   88 (293)
T cd05053          13 RLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDA----TEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQE   88 (293)
T ss_pred             HeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCC----CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCC
Confidence            34456789999999999998642      3578888775321    123345688999999999 899999999999887


Q ss_pred             CCcceEEEEeeCCCCCchhhcccc--------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeE
Q 007711          372 EPFTRMMVFEYAPNGTLFEHIHIK--------------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH  437 (592)
Q Consensus       372 ~~~~~~lv~Ey~~~gsL~~~l~~~--------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiL  437 (592)
                      +  ..+++|||+++|+|.++++..              ....+++..+++++.+++.|++|||+.+  |+||||||+||+
T Consensus        89 ~--~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~--ivH~dlkp~Nil  164 (293)
T cd05053          89 G--PLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKK--CIHRDLAARNVL  164 (293)
T ss_pred             C--CeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCC--ccccccceeeEE
Confidence            7  569999999999999998532              2356899999999999999999999988  999999999999


Q ss_pred             EcCCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHH
Q 007711          438 LTEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLED  505 (592)
Q Consensus       438 l~~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~  505 (592)
                      +++++.+||+|||+++.......           .+.+++......++.++|||||||++||+++ |..||.  .....+
T Consensus       165 ~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~--~~~~~~  242 (293)
T cd05053         165 VTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYP--GIPVEE  242 (293)
T ss_pred             EcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCC--CCCHHH
Confidence            99999999999999886542211           1222333333346788999999999999998 999984  223333


Q ss_pred             HHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          506 WAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      .......+ ...         ..+..+...+.+++.+||+.+|++|||+.|+++.|+++.
T Consensus       243 ~~~~~~~~-~~~---------~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         243 LFKLLKEG-YRM---------EKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             HHHHHHcC-CcC---------CCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence            32222221 111         112233457889999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=8.9e-36  Score=307.17  Aligned_cols=239  Identities=18%  Similarity=0.247  Sum_probs=184.0

Q ss_pred             hhhhcccCcCCCeEEEEEEeCC--CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSN--GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~--~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      ..+.+.||+|+||.||+|.+.+  +..||+|.+.......  ....+.+.+|+++++.++||||+++++++....  ..+
T Consensus        32 y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~--~~~  107 (340)
T PTZ00426         32 FNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIK--QKQVDHVFSERKILNYINHPFCVNLYGSFKDES--YLY  107 (340)
T ss_pred             cEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhh--hhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCC--EEE
Confidence            4456889999999999998643  3689999876432211  223457889999999999999999999998877  679


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +||||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....
T Consensus       108 lv~Ey~~~g~L~~~i~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~  183 (340)
T PTZ00426        108 LVLEFVIGGEFFTFLRR--NKRFPNDVGCFYAAQIVLIFEYLQSLN--IVYRDLKPENLLLDKDGFIKMTDFGFAKVVDT  183 (340)
T ss_pred             EEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEccCCCHHHEEECCCCCEEEecCCCCeecCC
Confidence            99999999999999863  346889999999999999999999999  99999999999999999999999999876542


Q ss_pred             hh------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          458 AE------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       458 ~~------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                      ..      ..+.+|+......++.++|||||||++|||+||+.||...  +..........+...           ++..
T Consensus       184 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~--~~~~~~~~i~~~~~~-----------~p~~  250 (340)
T PTZ00426        184 RTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYAN--EPLLIYQKILEGIIY-----------FPKF  250 (340)
T ss_pred             CcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCC--CHHHHHHHHhcCCCC-----------CCCC
Confidence            21      1223333333334688999999999999999999999532  222223333322111           1122


Q ss_pred             HHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      ....+.+++.+|++.||++|+     +++++.+
T Consensus       251 ~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~  283 (340)
T PTZ00426        251 LDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKE  283 (340)
T ss_pred             CCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHc
Confidence            234678999999999999995     7888765

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=5.4e-35  Score=291.03  Aligned_cols=249  Identities=23%  Similarity=0.340  Sum_probs=195.0

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|... +|..+++|.+......+  ....+.+.+|++++++++|+|++++++++...+  ..++|
T Consensus         5 ~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~--~~~lv   80 (267)
T cd08224           5 KIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMD--AKARQDCLKEIDLLKQLDHPNVIKYLASFIENN--ELNIV   80 (267)
T ss_pred             eeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccc--hhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCC--eEEEE
Confidence            35678999999999999976 78999999876433222  234567999999999999999999999998876  67999


Q ss_pred             EeeCCCCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          380 FEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      |||+++|+|.+++..  .....+++..+..++.++++|++|||+.+  ++||||||+||++++++.++|+|||+++....
T Consensus        81 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~  158 (267)
T cd08224          81 LELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKR--IMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCC--EecCCcChhhEEECCCCcEEEeccceeeeccC
Confidence            999999999988853  23456889999999999999999999998  99999999999999999999999999876532


Q ss_pred             hh---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          458 AE---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       458 ~~---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      ..         ..+.+++......++.++|||||||++|||++|+.||........+.......+.  .    .    ..
T Consensus       159 ~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~--~----~----~~  228 (267)
T cd08224         159 KTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCD--Y----P----PL  228 (267)
T ss_pred             CCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCC--C----C----CC
Confidence            21         1122333333334678899999999999999999999655544444433322211  0    1    11


Q ss_pred             C-HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          529 D-EEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       529 ~-~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      + ...+..+.+++.+||..+|++||++.+|++.|+++-
T Consensus       229 ~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         229 PADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             ChhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence            1 133457899999999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.4e-35  Score=300.17  Aligned_cols=249  Identities=22%  Similarity=0.309  Sum_probs=183.4

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCC---------------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceee
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSN---------------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN  363 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~---------------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~  363 (592)
                      ...+.+.||+|+||.||++...+               ...||+|.+....    .......|.+|++++++++|+|+++
T Consensus         6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~ei~~l~~l~h~~i~~   81 (295)
T cd05097           6 QLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADV----TKTARNDFLKEIKIMSRLKNPNIIR   81 (295)
T ss_pred             hCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCC----CHHHHHHHHHHHHHHHhCCCCCcCe
Confidence            34456789999999999987532               2347788765322    1234567999999999999999999


Q ss_pred             eeEEEecCCCcceEEEEeeCCCCCchhhccccC----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCC
Q 007711          364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE----------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNS  433 (592)
Q Consensus       364 l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~----------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~  433 (592)
                      +++++....  ..++||||+++++|.+++....          ...++|..+++++.+++.|++|||+.+  ++||||||
T Consensus        82 ~~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~--i~H~dlkp  157 (295)
T cd05097          82 LLGVCVSDD--PLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLN--FVHRDLAT  157 (295)
T ss_pred             EEEEEcCCC--ccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcC--eeccccCh
Confidence            999998776  6799999999999999885421          124788999999999999999999998  99999999


Q ss_pred             CCeEEcCCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh--CCCcccCCC
Q 007711          434 SAVHLTEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT--GRLPYLVDN  500 (592)
Q Consensus       434 ~NiLl~~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t--G~~P~~~~~  500 (592)
                      +||++++++.+||+|||+++.......           .+.+++......++.++|||||||++|||+|  |..||... 
T Consensus       158 ~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~-  236 (295)
T cd05097         158 RNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLL-  236 (295)
T ss_pred             hhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCccc-
Confidence            999999999999999999876432211           1222333333346889999999999999998  66777432 


Q ss_pred             CChHHHHHHH---hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          501 GSLEDWAADY---LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       501 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                       ...+.....   .......  ..    ...+...+..+.+++.+||+.||++||++.+|++.|++
T Consensus       237 -~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~~  295 (295)
T cd05097         237 -SDEQVIENTGEFFRNQGRQ--IY----LSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLRE  295 (295)
T ss_pred             -ChHHHHHHHHHhhhhcccc--cc----CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhC
Confidence             222222111   1110000  00    01111234579999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=2.3e-35  Score=298.94  Aligned_cols=247  Identities=23%  Similarity=0.398  Sum_probs=188.1

Q ss_pred             hhcccCcCCCeEEEEEEeCC-Cc--EEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceE
Q 007711          302 FSNVIGSSPIGTVYKGTLSN-GV--EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~-~~--~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.||+|+||.||+|...+ +.  .+++|.++...    .....+.|.+|++++.++ +||||+++++++....  ..+
T Consensus         6 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~--~~~   79 (297)
T cd05089           6 FEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFA----SENDHRDFAGELEVLCKLGHHPNIINLLGACENRG--YLY   79 (297)
T ss_pred             eeeeecCCCcceEEEEEecCCCCcceeEEEEccccC----CHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCC--cce
Confidence            45789999999999998753 33  35666654221    123456799999999999 7999999999998766  579


Q ss_pred             EEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc
Q 007711          378 MVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA  443 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~  443 (592)
                      +|+||+++|+|.++++...              ...+++.....++.|++.|++|||+.+  ++||||||+|||+++++.
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~--ivH~dlkp~Nill~~~~~  157 (297)
T cd05089          80 IAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQ--FIHRDLAARNVLVGENLA  157 (297)
T ss_pred             EEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCcCCcceEEECCCCe
Confidence            9999999999999986421              135889999999999999999999988  999999999999999999


Q ss_pred             eEEecCCcchhhhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCC
Q 007711          444 AKLSDLSFWNEIAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV  514 (592)
Q Consensus       444 ~ki~DfGla~~~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~  514 (592)
                      +||+|||++.......        ..+.+++......++.++|||||||++|||+| |+.||..  ....+.......+.
T Consensus       158 ~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~--~~~~~~~~~~~~~~  235 (297)
T cd05089         158 SKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCG--MTCAELYEKLPQGY  235 (297)
T ss_pred             EEECCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHhcCC
Confidence            9999999986432110        11223333333346889999999999999998 9999943  33333333322221


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          515 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      .          ...+..++..+.+++.+||+.+|.+||+++++++.|++++...
T Consensus       236 ~----------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~  279 (297)
T cd05089         236 R----------MEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEAR  279 (297)
T ss_pred             C----------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence            0          0112233457899999999999999999999999999998654

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=3.8e-35  Score=292.82  Aligned_cols=243  Identities=23%  Similarity=0.343  Sum_probs=177.0

Q ss_pred             cccCcCCCeEEEEEEeCC---CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          304 NVIGSSPIGTVYKGTLSN---GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~---~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.||+|+||.||+|.+.+   +..+++|.+.....    ......|.+|+.++++++||||++++|++.+..  ..++||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   74 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSAS----VQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVT--PYLLVM   74 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCC----hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC--CcEEEE
Confidence            358999999999998654   34677776643321    223457899999999999999999999998766  568999


Q ss_pred             eeCCCCCchhhccccC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          381 EYAPNGTLFEHIHIKE---SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~---~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      ||+++|+|.++++...   ....++....+++.|++.|++|||+.+  ++||||||+||++++++++|++|||+++....
T Consensus        75 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~  152 (269)
T cd05087          75 EFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNN--FIHSDLALRNCLLTADLTVKIGDYGLSHNKYK  152 (269)
T ss_pred             ECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC--EeccccCcceEEEcCCCcEEECCccccccccC
Confidence            9999999999986432   235677888899999999999999998  99999999999999999999999999865422


Q ss_pred             hhhhhc-----ccccCCCCC-------------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCc
Q 007711          458 AEMAAT-----SKKLSSAPS-------------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQ  518 (592)
Q Consensus       458 ~~~~~~-----~~~~~~~~~-------------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~  518 (592)
                      ......     .+..+.+||             ++.++|||||||++|||++ |+.||....  ..+........  ...
T Consensus       153 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~--~~~~~~~~~~~--~~~  228 (269)
T cd05087         153 EDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLS--DEQVLTYTVRE--QQL  228 (269)
T ss_pred             cceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCC--hHHHHHHHhhc--ccC
Confidence            111000     011123333             3678999999999999997 999994322  22211111111  111


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       519 ~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                      ...++...   ......+.+++..|| .+|++|||++||+..|+
T Consensus       229 ~~~~~~~~---~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         229 KLPKPRLK---LPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             CCCCCccC---CCCChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            11222221   112346888999999 68999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=2.7e-35  Score=299.86  Aligned_cols=256  Identities=22%  Similarity=0.332  Sum_probs=194.7

Q ss_pred             HHHHHHHhhhhcccCcCCCeEEEEEEeC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceee
Q 007711          293 SELEAACEDFSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVN  363 (592)
Q Consensus       293 ~el~~~~~~~~~~lG~G~~g~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~  363 (592)
                      .++......+.+.||+|+||.||++...        +...+|+|.+....    ......++..|++++.++ +|+||++
T Consensus        13 ~~~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~----~~~~~~~~~~e~~~l~~l~~h~~i~~   88 (307)
T cd05098          13 WEVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDA----TEKDLSDLISEMEMMKMIGKHKNIIN   88 (307)
T ss_pred             ceeehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCC----ChHHHHHHHHHHHHHHHhcCCCCEee
Confidence            3455555666789999999999999752        23468888775322    122345788899999999 7999999


Q ss_pred             eeEEEecCCCcceEEEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEee
Q 007711          364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHN  429 (592)
Q Consensus       364 l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~  429 (592)
                      ++++|....  ..++|+||+++|+|.+++....              ...++|..+++++.+++.||+|||+.+  ++||
T Consensus        89 ~~~~~~~~~--~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g--i~H~  164 (307)
T cd05098          89 LLGACTQDG--PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKK--CIHR  164 (307)
T ss_pred             EEEEEecCC--ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC--cccc
Confidence            999998877  5799999999999999986432              135899999999999999999999988  9999


Q ss_pred             CcCCCCeEEcCCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCccc
Q 007711          430 YLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYL  497 (592)
Q Consensus       430 dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~  497 (592)
                      ||||+||++++++.+||+|||+++.......           .+.+++......++.++|||||||++|||++ |+.||.
T Consensus       165 dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~  244 (307)
T cd05098         165 DLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP  244 (307)
T ss_pred             cccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCC
Confidence            9999999999999999999999875532111           1222332223336889999999999999998 888984


Q ss_pred             CCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          498 VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      .  ....+........ ..         ...+...+.++.+++.+||+.+|++||++.++++.|++++...
T Consensus       245 ~--~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~~  303 (307)
T cd05098         245 G--VPVEELFKLLKEG-HR---------MDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILALT  303 (307)
T ss_pred             c--CCHHHHHHHHHcC-CC---------CCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHHHh
Confidence            2  3333333332221 11         1112234467889999999999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=2.5e-35  Score=294.09  Aligned_cols=244  Identities=19%  Similarity=0.328  Sum_probs=189.0

Q ss_pred             hhhhcccCcCCCeEEEEEEeCC-C---cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSN-G---VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~-~---~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      .++.+.||+|+||.||+|.+.. +   ..|++|.+....    .....++|..|++++++++||||+++++++....  .
T Consensus         6 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~--~   79 (269)
T cd05065           6 VKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGY----TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSR--P   79 (269)
T ss_pred             eEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCC----CHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCC--c
Confidence            4466889999999999999643 3   358888875331    2334578999999999999999999999998776  5


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++|+||+++|+|.+++... ...+++..+..++.+++.|++|||+.+  ++||||||+||+++.++.+|++|||+++..
T Consensus        80 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~l~~al~~lH~~g--~~H~dl~p~nili~~~~~~kl~dfg~~~~~  156 (269)
T cd05065          80 VMIITEFMENGALDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLSEMN--YVHRDLAARNILVNSNLVCKVSDFGLSRFL  156 (269)
T ss_pred             eEEEEecCCCCcHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccChheEEEcCCCcEEECCCcccccc
Confidence            69999999999999998643 346899999999999999999999998  999999999999999999999999998765


Q ss_pred             hhhhh--------------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          456 AMAEM--------------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       456 ~~~~~--------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      .....              .+.+++......++.++|||||||++||+++ |..||...  +..+........ ...   
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~--~~~~~~~~i~~~-~~~---  230 (269)
T cd05065         157 EDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDM--SNQDVINAIEQD-YRL---  230 (269)
T ss_pred             ccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCC--CHHHHHHHHHcC-CcC---
Confidence            32111              1223333333446789999999999999987 99999532  222222222111 111   


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                            ..+.+++..+.+++.+||+.+|++||++.+++..|+++
T Consensus       231 ------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         231 ------PPPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             ------CCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence                  11223445788999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.2e-35  Score=290.33  Aligned_cols=244  Identities=24%  Similarity=0.403  Sum_probs=192.5

Q ss_pred             HHhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          298 ACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       298 ~~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      ....+.+.||+|+||.||+|..+++..+++|.+.....      ...++.+|++++++++|+||+++++++....  ..+
T Consensus         6 ~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~   77 (261)
T cd05034           6 ESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM------SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEE--PIY   77 (261)
T ss_pred             hheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc------CHHHHHHHHHHHhhCCCCCEeeeeeeeecCC--ceE
Confidence            33445688999999999999988888899998753321      2467899999999999999999999988766  579


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +||||+++++|.+++.......+++..+..++.+++.|++|||+.+  ++|+||||+||++++++.+|++|||+++....
T Consensus        78 ~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~--i~h~di~p~nili~~~~~~~l~d~g~~~~~~~  155 (261)
T cd05034          78 IVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRN--YIHRDLAARNILVGENLVCKIADFGLARLIED  155 (261)
T ss_pred             EEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCcchheEEEcCCCCEEECccccceeccc
Confidence            9999999999999997655567899999999999999999999998  99999999999999999999999999876542


Q ss_pred             hhh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          458 AEM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       458 ~~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      ...          .+.+++......++.++|||||||++||++| |+.||...  ...+.......... .         
T Consensus       156 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~--~~~~~~~~~~~~~~-~---------  223 (261)
T cd05034         156 DEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGM--TNREVLEQVERGYR-M---------  223 (261)
T ss_pred             hhhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCC-C---------
Confidence            111          1223333333447889999999999999999 99999432  22233333222110 0         


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      ..+...+.++.+++.+||+.+|++||+++++.+.|+.
T Consensus       224 ~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         224 PRPPNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             CCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence            0112224578999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.9e-35  Score=289.39  Aligned_cols=238  Identities=24%  Similarity=0.357  Sum_probs=184.8

Q ss_pred             cccCcCCCeEEEEEEeCC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          304 NVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.||+|+||.||+|.+..    +..+++|.+......    ...+++.+|++++++++|+||+++++++...   ..++|
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~---~~~~v   73 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA----AGKKEFLREASVMAQLDHPCIVRLIGVCKGE---PLMLV   73 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccch----HHHHHHHHHHHHHHhcCCCCeeeEEEEEcCC---ceEEE
Confidence            469999999999998532    267888877543321    3456799999999999999999999988643   46899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++|+|.+++...  ..+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++......
T Consensus        74 ~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lh~~~--i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~  149 (257)
T cd05060          74 MELAPLGPLLKYLKKR--REIPVSDLKELAHQVAMGMAYLESKH--FVHRDLAARNVLLVNRHQAKISDFGMSRALGAGS  149 (257)
T ss_pred             EEeCCCCcHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHhhcC--eeccCcccceEEEcCCCcEEeccccccceeecCC
Confidence            9999999999999743  36899999999999999999999998  9999999999999999999999999988653322


Q ss_pred             h------------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          460 M------------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       460 ~------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      .            .+.+++......++.++|||||||++||++| |+.||....  ..+........ ...         
T Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~--~~~~~~~~~~~-~~~---------  217 (257)
T cd05060         150 DYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMK--GAEVIAMLESG-ERL---------  217 (257)
T ss_pred             cccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCC--HHHHHHHHHcC-CcC---------
Confidence            1            1222333333346889999999999999998 999995332  23333222221 111         


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      ..+..++..+.+++.+||..+|++||++.++++.|+++
T Consensus       218 ~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~  255 (257)
T cd05060         218 PRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRD  255 (257)
T ss_pred             CCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhc
Confidence            11223445789999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=3.7e-35  Score=290.68  Aligned_cols=239  Identities=23%  Similarity=0.328  Sum_probs=185.5

Q ss_pred             cccCcCCCeEEEEEEeCC--C--cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          304 NVIGSSPIGTVYKGTLSN--G--VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~--~--~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.||+|+||.||+|.+.+  +  ..+|+|.+......    ...++|.+|++++++++|+||+++++++.. .  ..++|
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~--~~~~v   73 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS----DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-H--PLMMV   73 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccH----HHHHHHHHHHHHHhhcCCCCccceeEEEcC-C--eEEEE
Confidence            368999999999999743  2  35888877543321    456789999999999999999999999887 4  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||+++|+|.+++.......++|.....++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++......
T Consensus        74 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~  151 (257)
T cd05040          74 TELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKR--FIHRDLAARNILLASDDKVKIGDFGLMRALPQNE  151 (257)
T ss_pred             EEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCC--ccccccCcccEEEecCCEEEeccccccccccccc
Confidence            99999999999987543356899999999999999999999998  9999999999999999999999999988764321


Q ss_pred             h------------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          460 M------------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       460 ~------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      .            .+.+++......++.++|||||||++|||+| |+.||..  ....+............         
T Consensus       152 ~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~--~~~~~~~~~~~~~~~~~---------  220 (257)
T cd05040         152 DHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAG--LSGSQILKKIDKEGERL---------  220 (257)
T ss_pred             cceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHhcCCcC---------
Confidence            1            1222233333346888999999999999999 9999942  23333333322211110         


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                      ..+...+..+.+++.+||+.+|++||++.++++.|.
T Consensus       221 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         221 ERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             CCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence            112223457899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=2.1e-35  Score=299.05  Aligned_cols=248  Identities=23%  Similarity=0.347  Sum_probs=183.7

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-----------------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCcee
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-----------------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV  362 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-----------------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv  362 (592)
                      ..+.+.||+|+||.||++...                 ++..+|+|.+....    ......+|.+|++++++++|+||+
T Consensus         7 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~----~~~~~~~~~~E~~~l~~l~~~~i~   82 (296)
T cd05095           7 LTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDA----NKNARNDFLKEIKIMSRLKDPNII   82 (296)
T ss_pred             ceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccC----CHHHHHHHHHHHHHHHhCCCCCcc
Confidence            345688999999999998643                 23457777765332    123456899999999999999999


Q ss_pred             eeeEEEecCCCcceEEEEeeCCCCCchhhccccC---------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCC
Q 007711          363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE---------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNS  433 (592)
Q Consensus       363 ~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~---------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~  433 (592)
                      ++++++...+  ..++||||+++|+|.+++....         ...+++.....++.+++.|++|||+++  ++||||||
T Consensus        83 ~~~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~H~dlkp  158 (296)
T cd05095          83 RLLAVCITSD--PLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLN--FVHRDLAT  158 (296)
T ss_pred             eEEEEEecCC--ccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCC--eecccCCh
Confidence            9999998877  5699999999999999886421         134778899999999999999999998  99999999


Q ss_pred             CCeEEcCCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh--CCCcccCCC
Q 007711          434 SAVHLTEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT--GRLPYLVDN  500 (592)
Q Consensus       434 ~NiLl~~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t--G~~P~~~~~  500 (592)
                      +||++++++.+||+|||+++.......           .+.+++......++.++|||||||++|||+|  |..||..  
T Consensus       159 ~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~--  236 (296)
T cd05095         159 RNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQ--  236 (296)
T ss_pred             heEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccc--
Confidence            999999999999999999876532110           1112222222346889999999999999998  7788842  


Q ss_pred             CChHHHHHH---HhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          501 GSLEDWAAD---YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       501 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      .+..+....   ......  .....+    .+..++..+.+++.+||+.||++||++.||++.|++
T Consensus       237 ~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         237 LSDEQVIENTGEFFRDQG--RQVYLP----KPALCPDSLYKLMLSCWRRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             cChHHHHHHHHHHHhhcc--ccccCC----CCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            222222211   111100  000111    122344678999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.4e-35  Score=290.03  Aligned_cols=241  Identities=25%  Similarity=0.411  Sum_probs=190.0

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||.||+|... |+.+++|.+.....      ..+++.+|+.++++++|+||+++++++....  ..++||
T Consensus         9 ~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~   79 (256)
T cd05039           9 KLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST------AAQAFLAEASVMTTLRHPNLVQLLGVVLQGN--PLYIVT   79 (256)
T ss_pred             cceeeeecCCCceEEEEEec-CcEEEEEEeccchh------HHHHHHHHHHHHHhcCCcceeeeEEEEcCCC--CeEEEE
Confidence            35678999999999999874 78899998754321      3567999999999999999999999998765  579999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++++|.+++.......++|.....++.+++.|+.|||+.+  ++||||||+||++++++.+||+|||.++.......
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~--i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~  157 (256)
T cd05039          80 EYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKN--FVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD  157 (256)
T ss_pred             EecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccchhcccceEEEeCCCCEEEcccccccccccccc
Confidence            9999999999997655557899999999999999999999998  99999999999999999999999999887643222


Q ss_pred             h------hcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          461 A------ATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       461 ~------~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                      .      +.+++......++.++||||||+++||+++ |+.||...  ...+.......+ ...         ..+...+
T Consensus       158 ~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~--~~~~~~~~~~~~-~~~---------~~~~~~~  225 (256)
T cd05039         158 SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVVPHVEKG-YRM---------EAPEGCP  225 (256)
T ss_pred             cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHhcC-CCC---------CCccCCC
Confidence            1      223333333346778999999999999998 99998432  222222222111 110         1112234


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      ..+.+++.+||..+|++||+++|+++.|+.+
T Consensus       226 ~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         226 PEVYKVMKDCWELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             HHHHHHHHHHhccChhhCcCHHHHHHHHhcC
Confidence            6789999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=3.4e-35  Score=298.67  Aligned_cols=254  Identities=20%  Similarity=0.335  Sum_probs=194.0

Q ss_pred             HHHHHhhhhcccCcCCCeEEEEEEeC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeee
Q 007711          295 LEAACEDFSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLI  365 (592)
Q Consensus       295 l~~~~~~~~~~lG~G~~g~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~  365 (592)
                      +......+.+.||+|+||.||+++..        ++..+++|.+....    .....+++.+|+.+++.+ +|+||++++
T Consensus        12 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~----~~~~~~~~~~E~~~l~~l~~h~~i~~~~   87 (304)
T cd05101          12 FSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDA----TEKDLSDLVSEMEMMKMIGKHKNIINLL   87 (304)
T ss_pred             ccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeeccccc----chHHHHHHHHHHHHHHhhccCCCchhee
Confidence            33444456688999999999999741        24468888764321    123356789999999999 899999999


Q ss_pred             EEEecCCCcceEEEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCc
Q 007711          366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL  431 (592)
Q Consensus       366 g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dL  431 (592)
                      +++....  ..++||||+++|+|.+++....              ...++|..+..++.|++.|++|||+.+  ++||||
T Consensus        88 ~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~g--ivH~dl  163 (304)
T cd05101          88 GACTQDG--PLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQK--CIHRDL  163 (304)
T ss_pred             EEEecCC--ceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCC--eeeccc
Confidence            9998876  6799999999999999986431              235788999999999999999999998  999999


Q ss_pred             CCCCeEEcCCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCC
Q 007711          432 NSSAVHLTEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVD  499 (592)
Q Consensus       432 k~~NiLl~~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~  499 (592)
                      ||+||++++++.+||+|||+++.......           .+.+++......++.++||||||+++||++| |..||.  
T Consensus       164 kp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~--  241 (304)
T cd05101         164 AARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP--  241 (304)
T ss_pred             ccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcc--
Confidence            99999999999999999999886532111           1222333333346889999999999999999 888883  


Q ss_pred             CCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          500 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      .....++........ ..         ..+..++..+.+++.+||+.+|++||++.|+++.|+++....
T Consensus       242 ~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~~  300 (304)
T cd05101         242 GIPVEELFKLLKEGH-RM---------DKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILTLT  300 (304)
T ss_pred             cCCHHHHHHHHHcCC-cC---------CCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHHhh
Confidence            334444444332221 11         112234567899999999999999999999999999997654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=7.7e-36  Score=301.00  Aligned_cols=247  Identities=18%  Similarity=0.301  Sum_probs=187.5

Q ss_pred             HhhhhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  372 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  372 (592)
                      ...+.+.||+|+||.||+|..+      .+..||+|.+....    .......|.+|+.+++.++|+||+++++++....
T Consensus         7 ~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   82 (288)
T cd05061           7 KITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESA----SLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQ   82 (288)
T ss_pred             HceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcC----CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC
Confidence            3445688999999999999753      24578888764322    1223456889999999999999999999988776


Q ss_pred             CcceEEEEeeCCCCCchhhccccC--------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCce
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKE--------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAA  444 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~--------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~  444 (592)
                        ..++||||+++|+|.++++...        .....+....+++.+++.||+|||+.+  ++||||||+||++++++.+
T Consensus        83 --~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~H~dikp~nili~~~~~~  158 (288)
T cd05061          83 --PTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKK--FVHRDLAARNCMVAHDFTV  158 (288)
T ss_pred             --CcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--CcCCCCChheEEEcCCCcE
Confidence              5699999999999999986421        234567788999999999999999998  9999999999999999999


Q ss_pred             EEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhc
Q 007711          445 KLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLS  512 (592)
Q Consensus       445 ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~  512 (592)
                      ||+|||+++.......           .+.+++......++.++|||||||++|||++ |+.||..  ....++......
T Consensus       159 ~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~--~~~~~~~~~~~~  236 (288)
T cd05061         159 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQG--LSNEQVLKFVMD  236 (288)
T ss_pred             EECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHc
Confidence            9999999875432111           1222333333346889999999999999999 7889843  233333332222


Q ss_pred             CCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          513 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      +..          ...+..++..+.+++.+||+.||++||++.++++.|++.+
T Consensus       237 ~~~----------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~  279 (288)
T cd05061         237 GGY----------LDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL  279 (288)
T ss_pred             CCC----------CCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhc
Confidence            211          1112233467999999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=3.6e-35  Score=292.64  Aligned_cols=244  Identities=20%  Similarity=0.357  Sum_probs=187.8

Q ss_pred             hhhhcccCcCCCeEEEEEEeC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      .++.+.||+|+||.||+|...    .+..+++|.+....    .....+.|..|+.++.+++||||+++++++...+  .
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~   79 (267)
T cd05066           6 IKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGY----TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSK--P   79 (267)
T ss_pred             eEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCC----CHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC--c
Confidence            345688999999999999863    23367888764322    1234568999999999999999999999998776  6


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++|+|.+++... ...+++.....++.+++.|++|||+.+  ++||||||+||+++.++.+|++|||+++..
T Consensus        80 ~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~h~dlkp~nili~~~~~~~l~dfg~~~~~  156 (267)
T cd05066          80 VMIVTEYMENGSLDAFLRKH-DGQFTVIQLVGMLRGIASGMKYLSDMG--YVHRDLAARNILVNSNLVCKVSDFGLSRVL  156 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EeehhhchhcEEECCCCeEEeCCCCccccc
Confidence            79999999999999998643 346899999999999999999999998  999999999999999999999999998865


Q ss_pred             hhhhh------------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccC
Q 007711          456 AMAEM------------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD  522 (592)
Q Consensus       456 ~~~~~------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (592)
                      .....            .+.+++......++.++||||||+++||+++ |+.||....  ..+.......+ ...     
T Consensus       157 ~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~--~~~~~~~~~~~-~~~-----  228 (267)
T cd05066         157 EDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMS--NQDVIKAIEEG-YRL-----  228 (267)
T ss_pred             ccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCC--HHHHHHHHhCC-CcC-----
Confidence            43211            1122333333346789999999999999887 999994322  22222222211 110     


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       523 ~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      +    .+..++..+.+++.+||+.+|++||+|.++++.|+++
T Consensus       229 ~----~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         229 P----APMDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             C----CCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence            1    1122345788999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=2e-35  Score=298.17  Aligned_cols=251  Identities=16%  Similarity=0.222  Sum_probs=178.3

Q ss_pred             hhhcccCcCCCeEEEEEEeC--CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC---CCCceeeeeEEEecC---C
Q 007711          301 DFSNVIGSSPIGTVYKGTLS--NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV---NHKNFVNLIGFCEEE---E  372 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~--~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l---~H~niv~l~g~~~~~---~  372 (592)
                      .+.+.||+|+||.||+|+..  ++..+|+|.+.......   .....+.+|+++++.+   +||||++++++|...   .
T Consensus         4 ~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~---~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~   80 (290)
T cd07862           4 ECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE---GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   80 (290)
T ss_pred             ceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCC---CchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence            34578999999999999862  46789999886543322   1234566677776655   699999999998632   1


Q ss_pred             CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcc
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  452 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla  452 (592)
                      ....++|+||++ ++|.+++.......+++..+..++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||++
T Consensus        81 ~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--iiH~dlkp~Nil~~~~~~~kl~Dfg~~  157 (290)
T cd07862          81 ETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR--VVHRDLKPQNILVTSSGQIKLADFGLA  157 (290)
T ss_pred             CCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHHHEEEcCCCCEEEccccce
Confidence            225789999996 68999887555566899999999999999999999998  999999999999999999999999998


Q ss_pred             hhhhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-----CC--
Q 007711          453 NEIAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----PL--  517 (592)
Q Consensus       453 ~~~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----~~--  517 (592)
                      +......        ..+.+++......++.++|||||||++|||++|+.||....  ..+..........     ..  
T Consensus       158 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~--~~~~~~~i~~~~~~~~~~~~~~  235 (290)
T cd07862         158 RIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSS--DVDQLGKILDVIGLPGEEDWPR  235 (290)
T ss_pred             EeccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCC--HHHHHHHHHHHhCCCChhhchh
Confidence            7654221        11223333333346889999999999999999999995322  2222222211100     00  


Q ss_pred             -----ccccCCCCC----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          518 -----QQFVDPTLS----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       518 -----~~~~~~~~~----~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                           .....+...    .........+.+++.+|++.||++|||+.|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         236 DVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             hhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence                 000000000    001123456789999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=3.6e-35  Score=294.40  Aligned_cols=238  Identities=20%  Similarity=0.240  Sum_probs=181.1

Q ss_pred             cCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeCC
Q 007711          306 IGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  384 (592)
Q Consensus       306 lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~~  384 (592)
                      ||+|+||.||+++.. +|..+|+|.+.......  ......+..|++++++++||||+++++++....  ..++||||++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~--~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~--~~~lv~e~~~   76 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKK--KSGEKMALLEKEILEKVNSPFIVNLAYAFESKT--HLCLVMSLMN   76 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhc--chhhHHHHHHHHHHHhcCCCcEEEEEEEEecCC--eEEEEEecCC
Confidence            799999999999864 58899999886433221  122345667999999999999999999988766  6799999999


Q ss_pred             CCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-----
Q 007711          385 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-----  459 (592)
Q Consensus       385 ~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-----  459 (592)
                      +|+|.+++.......+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+||+|||++.......     
T Consensus        77 g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~  154 (277)
T cd05607          77 GGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMD--IVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQR  154 (277)
T ss_pred             CCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCC--EEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeecc
Confidence            999998886555556899999999999999999999998  9999999999999999999999999987653221     


Q ss_pred             ---hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC--ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 007711          460 ---MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  534 (592)
Q Consensus       460 ---~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (592)
                         ..+.+++......++.++|||||||++|||++|+.||.....  ...++........      ....    ......
T Consensus       155 ~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~------~~~~----~~~~~~  224 (277)
T cd05607         155 AGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDE------VKFE----HQNFTE  224 (277)
T ss_pred             CCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhccc------cccc----cccCCH
Confidence               122333333333478899999999999999999999954322  1122222222111      0000    112234


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          535 TLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       535 ~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ++.+++.+||+.||++||+++|+++
T Consensus       225 ~~~~li~~~L~~~P~~R~~~~~~~~  249 (277)
T cd05607         225 ESKDICRLFLAKKPEDRLGSREKND  249 (277)
T ss_pred             HHHHHHHHHhccCHhhCCCCccchh
Confidence            6889999999999999999987653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-35  Score=298.07  Aligned_cols=242  Identities=19%  Similarity=0.246  Sum_probs=184.2

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+.||+|+||.||++.. .++..||+|.+.......  ......+.+|+.++++++|+||+++++++...+  ..++||
T Consensus         4 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   79 (285)
T cd05605           4 HYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK--RKGEAMALNEKQILEKVNSRFVVSLAYAYETKD--ALCLVL   79 (285)
T ss_pred             EEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhh--hhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCC--eEEEEE
Confidence            457899999999999996 468899999886533221  123456788999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++.......+++.....++.|++.|++|||+.+  ++||||||+||++++++.++|+|||+++...... 
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  157 (285)
T cd05605          80 TLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRER--IVYRDLKPENILLDDYGHIRISDLGLAVEIPEGET  157 (285)
T ss_pred             eccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCC--cEecCCCHHHEEECCCCCEEEeeCCCceecCCCCc
Confidence            9999999998886544456899999999999999999999998  9999999999999999999999999987643211 


Q ss_pred             -------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCCh-HHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 -------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-EDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 -------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                             ..+.+++......++.++|||||||++||+++|+.||....... .+.+......   .       ...++..
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~---~-------~~~~~~~  227 (285)
T cd05605         158 IRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKE---D-------QEEYSEK  227 (285)
T ss_pred             cccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhh---c-------ccccCcc
Confidence                   12223333333446889999999999999999999996432211 1111111111   0       0111223


Q ss_pred             HHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      .+..+.+++.+||+.||++||     +++++++
T Consensus       228 ~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05605         228 FSEAARSICRQLLTKDPGFRLGCRGEGAEEVKA  260 (285)
T ss_pred             cCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhc
Confidence            345688999999999999999     7777754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=3.6e-35  Score=298.18  Aligned_cols=247  Identities=23%  Similarity=0.351  Sum_probs=187.6

Q ss_pred             HhhhhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecC
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEE  371 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~  371 (592)
                      ...+.+.||+|+||.||++...      .+..+|+|.+.....    ....+.|.+|+++++++ +|+||+++++++...
T Consensus        36 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~  111 (302)
T cd05055          36 NLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAH----SSEREALMSELKIMSHLGNHENIVNLLGACTIG  111 (302)
T ss_pred             HeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCC----hHHHHHHHHHHHHHHhccCCCCcceEEEEEecC
Confidence            3445689999999999999741      345788887653321    22356789999999999 799999999999887


Q ss_pred             CCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCc
Q 007711          372 EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF  451 (592)
Q Consensus       372 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGl  451 (592)
                      +  ..++|+||+++|+|.++++......+++.+...++.+++.|++|||+.+  ++|+||||+|||+++++.+|++|||+
T Consensus       112 ~--~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~~l~dfg~  187 (302)
T cd05055         112 G--PILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKN--CIHRDLAARNVLLTHGKIVKICDFGL  187 (302)
T ss_pred             C--ceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eehhhhccceEEEcCCCeEEECCCcc
Confidence            7  5799999999999999997544445899999999999999999999998  99999999999999999999999999


Q ss_pred             chhhhhhhhh-----hcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCcc
Q 007711          452 WNEIAMAEMA-----ATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQ  519 (592)
Q Consensus       452 a~~~~~~~~~-----~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~  519 (592)
                      ++........     ...+..+.+|+      ++.++|||||||++|||+| |+.||.....  .+............  
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~--~~~~~~~~~~~~~~--  263 (302)
T cd05055         188 ARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPV--DSKFYKLIKEGYRM--  263 (302)
T ss_pred             cccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCc--hHHHHHHHHcCCcC--
Confidence            8865322110     00112234444      5788999999999999998 9999853322  11111222111100  


Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          520 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       520 ~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                             ..+...+.++.+++.+||..+|++||++.|+++.|+++
T Consensus       264 -------~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         264 -------AQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             -------CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence                   01112235789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=5.7e-35  Score=288.11  Aligned_cols=238  Identities=23%  Similarity=0.395  Sum_probs=185.7

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeC
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYA  383 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~  383 (592)
                      +.||+|+||.||+|...++..+++|.+....    .......|.+|++++++++|+||++++++|....  ..++||||+
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e~~   74 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDL----PQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQ--PIYIVMELV   74 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcC----CHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCC--ccEEEEECC
Confidence            3699999999999998888899999775332    2334567999999999999999999999998776  569999999


Q ss_pred             CCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh---
Q 007711          384 PNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM---  460 (592)
Q Consensus       384 ~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~---  460 (592)
                      ++|+|.+++... ...++|..+..++.+++.|+.|||+.+  ++||||||+||++++++.+||+|||+++.......   
T Consensus        75 ~~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~  151 (250)
T cd05085          75 PGGDFLSFLRKK-KDELKTKQLVKFALDAAAGMAYLESKN--CIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSS  151 (250)
T ss_pred             CCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecccChheEEEcCCCeEEECCCccceeccccccccC
Confidence            999999988643 346889999999999999999999988  99999999999999999999999999875432111   


Q ss_pred             -------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          461 -------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       461 -------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                             .+.+++......++.++|||||||++||+++ |..||...  ............ ...         ..+...
T Consensus       152 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~--~~~~~~~~~~~~-~~~---------~~~~~~  219 (250)
T cd05085         152 GLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGM--TNQQAREQVEKG-YRM---------SCPQKC  219 (250)
T ss_pred             CCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCC--CHHHHHHHHHcC-CCC---------CCCCCC
Confidence                   1223333333446789999999999999999 99999432  222222222111 110         112233


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                      +..+.+++.+||+.+|++||++.|+++.|.
T Consensus       220 ~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         220 PDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             CHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence            467899999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=1.4e-35  Score=301.30  Aligned_cols=248  Identities=24%  Similarity=0.411  Sum_probs=186.2

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEE--EEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcce
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEI--AVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~v--avk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~  376 (592)
                      .+.+.||+|+||.||+|.+. ++..+  ++|.+...    ........|.+|++++.++ +|+||+++++++...+  ..
T Consensus        10 ~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~----~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~--~~   83 (303)
T cd05088          10 KFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY----ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG--YL   83 (303)
T ss_pred             eeeeeecCCCCceEEEEEEccCCceeeEEEEEeccc----CCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCC--Cc
Confidence            35688999999999999964 45444  55544321    1233456789999999999 8999999999998876  67


Q ss_pred             EEEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC
Q 007711          377 MMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY  442 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~  442 (592)
                      ++|+||+++|+|.++++...              ...+++..++.++.+++.|++|||+.+  ++||||||+|||+++++
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g--i~H~dlkp~Nili~~~~  161 (303)
T cd05088          84 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ--FIHRDLAARNILVGENY  161 (303)
T ss_pred             eEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCC--ccccccchheEEecCCC
Confidence            99999999999999986431              235789999999999999999999998  99999999999999999


Q ss_pred             ceEEecCCcchhhhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcC
Q 007711          443 AAKLSDLSFWNEIAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG  513 (592)
Q Consensus       443 ~~ki~DfGla~~~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~  513 (592)
                      .+||+|||+++......        ..+.+++......++.++|||||||++|||+| |..||...  ...+........
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--~~~~~~~~~~~~  239 (303)
T cd05088         162 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM--TCAELYEKLPQG  239 (303)
T ss_pred             cEEeCccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccC--ChHHHHHHHhcC
Confidence            99999999986432111        11222333233336889999999999999998 99999432  222322222111


Q ss_pred             CCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                       ...         ..+...+..+.+++.+||+.+|++||++.++++.|++++...
T Consensus       240 -~~~---------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~~  284 (303)
T cd05088         240 -YRL---------EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEER  284 (303)
T ss_pred             -CcC---------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence             000         111223356889999999999999999999999999886553

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=3.7e-35  Score=300.94  Aligned_cols=236  Identities=18%  Similarity=0.281  Sum_probs=180.6

Q ss_pred             cccCcCCCeEEEEEEe----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          304 NVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.||+|+||.||+++.    ..+..+|+|.+....... .......+.+|+++++.++||||+++++++...+  ..++|
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~-~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~--~~~lv   78 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVR-NQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGG--KLYLI   78 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHh-hhhhHHHHHHHHHHHHhCCCCchhceeeEEecCC--eEEEE
Confidence            4699999999999985    357889999886532211 1123456788999999999999999999998876  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++|+|.+++..  ...+.+.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++......
T Consensus        79 ~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  154 (323)
T cd05584          79 LEYLSGGELFMHLER--EGIFMEDTACFYLSEISLALEHLHQQG--IIYRDLKPENILLDAQGHVKLTDFGLCKESIHEG  154 (323)
T ss_pred             EeCCCCchHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEECCCCCEEEeeCcCCeecccCC
Confidence            999999999998863  345778888889999999999999998  9999999999999999999999999987432111


Q ss_pred             ---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 ---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 ---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                               ..+.+||......++.++|||||||++|||+||+.||...  ...+.......+...           .+.
T Consensus       155 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~--~~~~~~~~~~~~~~~-----------~~~  221 (323)
T cd05584         155 TVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAE--NRKKTIDKILKGKLN-----------LPP  221 (323)
T ss_pred             CcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCC--CHHHHHHHHHcCCCC-----------CCC
Confidence                     1123333333333678999999999999999999999532  233333333332111           122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      .....+.+++.+||+.||++||     +++++++
T Consensus       222 ~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~  255 (323)
T cd05584         222 YLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQS  255 (323)
T ss_pred             CCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence            2335688999999999999999     7887765

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=9.7e-36  Score=304.67  Aligned_cols=231  Identities=21%  Similarity=0.281  Sum_probs=179.5

Q ss_pred             cccCcCCCeEEEEEEe----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          304 NVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.||+|+||.||+++.    .+|..+|+|++......   ......+..|++++++++||||+++++++....  ..++|
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~lv   76 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLK---VRDRVRTKMERDILAEVNHPFIVKLHYAFQTEG--KLYLI   76 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhh---hhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCC--EEEEE
Confidence            4699999999999874    35789999988654322   123456778999999999999999999998776  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      |||+++|+|.+++..  ...+++.....++.+++.||+|||+++  |+||||||+||++++++.+||+|||+++..... 
T Consensus        77 ~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~  152 (318)
T cd05582          77 LDFLRGGDLFTRLSK--EVMFTEEDVKFYLAELALALDHLHSLG--IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHE  152 (318)
T ss_pred             EcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHeEECCCCcEEEeeccCCcccCCCC
Confidence            999999999998853  346899999999999999999999998  999999999999999999999999998764322 


Q ss_pred             --------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          459 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       459 --------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                              ...+.+++......++.++|||||||++|||+||+.||..  .+..+...........           .+.
T Consensus       153 ~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~--~~~~~~~~~i~~~~~~-----------~p~  219 (318)
T cd05582         153 KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQG--KDRKETMTMILKAKLG-----------MPQ  219 (318)
T ss_pred             CceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCC--CCHHHHHHHHHcCCCC-----------CCC
Confidence                    1122333333334468899999999999999999999953  2333333333222111           122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRD  556 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~e  556 (592)
                      .....+.+++.+||+.||++||++.+
T Consensus       220 ~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         220 FLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             CCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence            23356889999999999999999655

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=3.9e-35  Score=294.09  Aligned_cols=241  Identities=22%  Similarity=0.318  Sum_probs=184.6

Q ss_pred             hhcccCcCCCeEEEEEEeCC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          302 FSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.||+|+||.||+|.+.+      +..|++|.+....    .......|.+|+.++++++|+||+++++++.+..  .
T Consensus        10 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~----~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~   83 (277)
T cd05036          10 LLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESC----SEQDESDFLMEALIMSKFNHQNIVRLIGVSFERL--P   83 (277)
T ss_pred             eeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCC----CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC--C
Confidence            45789999999999999753      4567777654322    1234567999999999999999999999998776  5


Q ss_pred             eEEEEeeCCCCCchhhccccC-----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC---ceEEe
Q 007711          376 RMMVFEYAPNGTLFEHIHIKE-----SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAKLS  447 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~-----~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~---~~ki~  447 (592)
                      .++||||+++|+|.++++...     ...++|..+++++.+++.|++|||+.+  ++||||||+||++++++   .+||+
T Consensus        84 ~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivH~dlkp~nil~~~~~~~~~~kl~  161 (277)
T cd05036          84 RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENH--FIHRDIAARNCLLTCKGPGRVAKIA  161 (277)
T ss_pred             cEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccchheEEEeccCCCcceEec
Confidence            689999999999999986432     235899999999999999999999998  99999999999998654   69999


Q ss_pred             cCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCC
Q 007711          448 DLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ  515 (592)
Q Consensus       448 DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~  515 (592)
                      |||+++......           ..+.+|+......++.++|||||||++|||+| |+.||..  ....+........ .
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~--~~~~~~~~~~~~~-~  238 (277)
T cd05036         162 DFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPG--RTNQEVMEFVTGG-G  238 (277)
T ss_pred             cCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHcC-C
Confidence            999988653211           11233343334447889999999999999997 9999953  2223333222221 1


Q ss_pred             CCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          516 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                      ..         ..+...+..+.+++.+||+.+|++||++.+|++.|+
T Consensus       239 ~~---------~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         239 RL---------DPPKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             cC---------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence            11         112233457899999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=5.6e-35  Score=301.15  Aligned_cols=258  Identities=22%  Similarity=0.338  Sum_probs=197.1

Q ss_pred             HHHHHHHhhhhcccCcCCCeEEEEEEeC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceee
Q 007711          293 SELEAACEDFSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVN  363 (592)
Q Consensus       293 ~el~~~~~~~~~~lG~G~~g~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~  363 (592)
                      +|+...+..+.+.||+|+||.||++...        .+..+|+|.+....    .....+++.+|++++.++ +|+||++
T Consensus         7 ~~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~~h~~iv~   82 (334)
T cd05100           7 WELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDA----TDKDLSDLVSEMEMMKMIGKHKNIIN   82 (334)
T ss_pred             cccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEccccc----CHHHHHHHHHHHHHHHhhcCCCCeee
Confidence            4555556667889999999999999742        12367888765322    123456799999999999 8999999


Q ss_pred             eeEEEecCCCcceEEEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEee
Q 007711          364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHN  429 (592)
Q Consensus       364 l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~  429 (592)
                      ++++|...+  ..++++||+++|+|.+++....              ...++|..++.++.+++.||+|||+.+  ++||
T Consensus        83 ~~~~~~~~~--~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g--ivH~  158 (334)
T cd05100          83 LLGACTQDG--PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQK--CIHR  158 (334)
T ss_pred             eeEEEccCC--ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC--eecc
Confidence            999998876  5799999999999999986421              235889999999999999999999998  9999


Q ss_pred             CcCCCCeEEcCCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCccc
Q 007711          430 YLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYL  497 (592)
Q Consensus       430 dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~  497 (592)
                      ||||+||++++++.+||+|||+++.......           .+.+++......++.++|||||||++|||++ |..||.
T Consensus       159 dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~  238 (334)
T cd05100         159 DLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYP  238 (334)
T ss_pred             ccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCC
Confidence            9999999999999999999999876532211           1222333333346788999999999999999 889984


Q ss_pred             CCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCC
Q 007711          498 VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  570 (592)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~  570 (592)
                        .....++........ ..         ..+..++..+.+++.+||+.+|++||++.|+++.|+++....+.
T Consensus       239 --~~~~~~~~~~~~~~~-~~---------~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~~~~  299 (334)
T cd05100         239 --GIPVEELFKLLKEGH-RM---------DKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTVTST  299 (334)
T ss_pred             --CCCHHHHHHHHHcCC-CC---------CCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhhhcCC
Confidence              334444443332221 10         11222345788999999999999999999999999999866543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=6.9e-35  Score=290.93  Aligned_cols=242  Identities=23%  Similarity=0.361  Sum_probs=176.2

Q ss_pred             ccCcCCCeEEEEEEeCCC---cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          305 VIGSSPIGTVYKGTLSNG---VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       305 ~lG~G~~g~Vy~g~~~~~---~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .||+|+||.||+|...++   ..+++|.+....    .......|.+|++.++.++|+||++++|+|....  ..++|||
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~--~~~lv~e   75 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASA----TPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESI--PYLLVLE   75 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccC----ChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCC--ceEEEEE
Confidence            599999999999986443   345666543221    2334567899999999999999999999998776  5799999


Q ss_pred             eCCCCCchhhccccC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          382 YAPNGTLFEHIHIKE---SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~---~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |+++|+|.+++....   ....++.....++.|++.|++|||+.+  |+||||||+||++++++.+||+|||+++.....
T Consensus        76 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~  153 (269)
T cd05042          76 FCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQAD--FIHSDLALRNCQLTADLSVKIGDYGLALEQYPE  153 (269)
T ss_pred             eCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcC--EecccccHhheEecCCCcEEEeccccccccccc
Confidence            999999999986532   233567888899999999999999998  999999999999999999999999998653221


Q ss_pred             h-----------hhhcccccC-------CCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCcc
Q 007711          459 E-----------MAATSKKLS-------SAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQ  519 (592)
Q Consensus       459 ~-----------~~~~~~~~~-------~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~  519 (592)
                      .           ..+.+|+..       ....++.++|||||||++|||++ |+.||...  ...+.........  ...
T Consensus       154 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~--~~~~~~~~~~~~~--~~~  229 (269)
T cd05042         154 DYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDL--SDEQVLKQVVREQ--DIK  229 (269)
T ss_pred             hheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcC--CHHHHHHHHhhcc--Ccc
Confidence            1           012222221       11235778999999999999999 78888422  2222222222221  111


Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          520 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       520 ~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                      +.++..   +......+.+++..|| .||++||++++|++.|.
T Consensus       230 ~~~~~~---~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         230 LPKPQL---DLKYSDRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             CCCCcc---cccCCHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            112221   2233456778999999 59999999999998873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=2.3e-35  Score=302.77  Aligned_cols=235  Identities=18%  Similarity=0.222  Sum_probs=181.6

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      +.||+|+||.||++.. .+|..+|+|.+.......  ......+..|++++..++||||+++++++....  ..++||||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~--~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~--~~~lv~E~   76 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVA--KDEVAHTLTENRVLQNSRHPFLTALKYSFQTHD--RLCFVMEY   76 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCC--EEEEEEeC
Confidence            3699999999999985 468899999986543221  223456788999999999999999999988776  67999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh---
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  458 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~---  458 (592)
                      +++|+|.+++..  ...+++.....++.|++.||+|||+ .+  |+||||||+|||++.++.+||+|||+++.....   
T Consensus        77 ~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~lH~~~~--ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~  152 (325)
T cd05594          77 ANGGELFFHLSR--ERVFSEDRARFYGAEIVSALDYLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT  152 (325)
T ss_pred             CCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhcCC--EEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcc
Confidence            999999888753  3468999999999999999999997 67  999999999999999999999999998753211   


Q ss_pred             ------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          459 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       459 ------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            ...+.+++......++.++|||||||++|||+||+.||..  ....+...........           ++...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~~~  219 (325)
T cd05594         153 MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEEIR-----------FPRTL  219 (325)
T ss_pred             cccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCC--CCHHHHHHHHhcCCCC-----------CCCCC
Confidence                  1122333333334478899999999999999999999943  2333333333222111           12223


Q ss_pred             HHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      ...+.+++.+||+.||++|+     ++.++++
T Consensus       220 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~  251 (325)
T cd05594         220 SPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQ  251 (325)
T ss_pred             CHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhc
Confidence            35688999999999999997     8888874

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=1e-34  Score=288.46  Aligned_cols=243  Identities=26%  Similarity=0.377  Sum_probs=182.2

Q ss_pred             cccCcCCCeEEEEEEeCC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          304 NVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.||+|+||.||+|.+.+    +..+|+|.+....    .....+.|.+|+.+++.++||||++++++|...+. ..+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~-~~~lv   75 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRIT----DLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEG-SPLVV   75 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccC----CHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCC-CcEEE
Confidence            468999999999998632    3568888764221    12335678899999999999999999998865432 46899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||+++|+|.+++... ...+.+...+.++.+++.|++|||+.+  ++||||||+|||+++++.+||+|||+++......
T Consensus        76 ~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~  152 (262)
T cd05058          76 LPYMKHGDLRNFIRSE-THNPTVKDLIGFGLQVAKGMEYLASKK--FVHRDLAARNCMLDESFTVKVADFGLARDIYDKE  152 (262)
T ss_pred             EecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccccCcceEEEcCCCcEEECCccccccccCCc
Confidence            9999999999998643 334678888999999999999999988  9999999999999999999999999987542211


Q ss_pred             -------------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhC-CCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          460 -------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTG-RLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       460 -------------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG-~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                                   ..+.+++......++.++|||||||++|||+|| ..||.  ..+..+.......+.. .        
T Consensus       153 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~--~~~~~~~~~~~~~~~~-~--------  221 (262)
T cd05058         153 YYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP--DVDSFDITVYLLQGRR-L--------  221 (262)
T ss_pred             ceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCC--CCCHHHHHHHHhcCCC-C--------
Confidence                         112223333333467899999999999999995 55563  2233333333322211 0        


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                       ..+...+..+.+++.+||+.+|++||++.|+++.|+++..
T Consensus       222 -~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~~  261 (262)
T cd05058         222 -LQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIFS  261 (262)
T ss_pred             -CCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHhc
Confidence             0112233578899999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=9.1e-35  Score=287.54  Aligned_cols=239  Identities=21%  Similarity=0.312  Sum_probs=188.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... ++..+++|.+......   .....++.+|++++++++||||+++++++...+  ..++|+
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   78 (256)
T cd08529           4 ILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMN---RREREEAIDEARVLAKLDSSYIIRYYESFLDKG--KLNIVM   78 (256)
T ss_pred             EeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCC---HHHHHHHHHHHHHHHhcCCCCeehheeeeccCC--EEEEEE
Confidence            4578999999999999964 6888999987643222   334678999999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++++|.++++......+++.....++.+++.|+.|||+.+  ++|+||||+||++++++.+||+|||+++.......
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~--i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~  156 (256)
T cd08529          79 EYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKK--ILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTN  156 (256)
T ss_pred             EeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCcceEEEeCCCCEEEcccccceeccCccc
Confidence            9999999999997655567899999999999999999999988  99999999999999999999999999876543221


Q ss_pred             ---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          461 ---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       461 ---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                               .+.+++......++.++|||||||++|||+||+.||....  ..+.......+.  .        ...+..
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~--~--------~~~~~~  224 (256)
T cd08529         157 FANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANN--QGALILKIIRGV--F--------PPVSQM  224 (256)
T ss_pred             hhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHcCC--C--------CCCccc
Confidence                     1223333333346789999999999999999999995332  223233322221  1        111223


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+.+++.+||+.+|++||++.++++
T Consensus       225 ~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  252 (256)
T cd08529         225 YSQQLAQLIDQCLTKDYRQRPDTFQLLR  252 (256)
T ss_pred             cCHHHHHHHHHHccCCcccCcCHHHHhh
Confidence            3457899999999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=1.5e-34  Score=288.51  Aligned_cols=242  Identities=22%  Similarity=0.322  Sum_probs=174.6

Q ss_pred             ccCcCCCeEEEEEEeCCCcEE---EEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          305 VIGSSPIGTVYKGTLSNGVEI---AVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       305 ~lG~G~~g~Vy~g~~~~~~~v---avk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .||+|+||.||+|...++..+   ++|.+....    .....+.|.+|+++++.++||||++++++|....  ..++|||
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~--~~~lv~e   75 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANA----SSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAI--PYLLVFE   75 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCC----ChHHHHHHHHHHHHHhccCCcchhheEEEecCCC--ccEEEEe
Confidence            599999999999986544433   344332211    1234578999999999999999999999998776  5699999


Q ss_pred             eCCCCCchhhccccC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          382 YAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~--~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |+++|+|.++++...  ....++.....++.+++.||+|||+.+  ++||||||+|||++.++.+||+|||+++......
T Consensus        76 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~  153 (268)
T cd05086          76 YCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHN--FLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKED  153 (268)
T ss_pred             cCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC--eeccCCccceEEEcCCccEEecccccccccCcch
Confidence            999999999987532  234567778899999999999999998  9999999999999999999999999876421110


Q ss_pred             -----------hhhcccccCC-------CCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          460 -----------MAATSKKLSS-------APSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       460 -----------~~~~~~~~~~-------~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                                 ..+.+++...       ...++.++|||||||++|||++ |..||..  .+..+.......+.  ....
T Consensus       154 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~--~~~~~~~~~~~~~~--~~~~  229 (268)
T cd05086         154 YIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSH--LSDREVLNHVIKDQ--QVKL  229 (268)
T ss_pred             hhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHhhc--cccc
Confidence                       1122222211       1124678999999999999998 6778842  23333333333221  1222


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                      .++....   .....+.+++..|| .+|++||++++|++.|.
T Consensus       230 ~~~~~~~---~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         230 FKPQLEL---PYSERWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             CCCccCC---CCcHHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            3333221   12346788999999 67999999999998774

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=4.2e-35  Score=290.97  Aligned_cols=245  Identities=22%  Similarity=0.355  Sum_probs=190.3

Q ss_pred             HHHHhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          296 EAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       296 ~~~~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      ......+.+.||+|+||.||++...++..+++|.+....      .....|.+|++++++++|+||+++.+++.. .  .
T Consensus         4 ~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~--~   74 (260)
T cd05073           4 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS------MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-E--P   74 (260)
T ss_pred             cccceeEEeEecCccceEEEEEEecCCccEEEEecCCCh------hHHHHHHHHHHHHHhcCCCCcceEEEEEcC-C--C
Confidence            344455678999999999999998788889998765321      234678999999999999999999999877 4  4


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .+++|||+++|+|.+++.......+++..+..++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||.++..
T Consensus        75 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~--i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~  152 (260)
T cd05073          75 IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN--YIHRDLRAANILVSASLVCKIADFGLARVI  152 (260)
T ss_pred             eEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCC--ccccccCcceEEEcCCCcEEECCCcceeec
Confidence            689999999999999997655567899999999999999999999988  999999999999999999999999998765


Q ss_pred             hhhhh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          456 AMAEM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       456 ~~~~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      .....          .+.+++......++.++|||||||++||++| |+.||...  +..+.......+ ...       
T Consensus       153 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~--~~~~~~~~~~~~-~~~-------  222 (260)
T cd05073         153 EDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM--SNPEVIRALERG-YRM-------  222 (260)
T ss_pred             cCCCcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHhCC-CCC-------
Confidence            32211          1223333333446889999999999999999 99999532  222222221111 111       


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                        ..+...+.++.+++.+||+.+|++||++.++.+.|+.
T Consensus       223 --~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         223 --PRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             --CCcccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence              0112233568899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-35  Score=297.46  Aligned_cols=245  Identities=20%  Similarity=0.326  Sum_probs=187.4

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  372 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  372 (592)
                      ...+.+.||+|+||.||+|...+      +..+++|.+....    .......|.+|+.++..++|+||+++++++....
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~----~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~   82 (277)
T cd05032           7 KITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENA----SMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQ   82 (277)
T ss_pred             HeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCcc----CHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCC
Confidence            33456889999999999998642      3678888864322    1234567899999999999999999999998876


Q ss_pred             CcceEEEEeeCCCCCchhhccccC--------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCce
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKE--------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAA  444 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~--------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~  444 (592)
                        ..++||||+++|+|.+++....        ...++|..+..++.+++.|+.|||+.+  ++||||||+||++++++.+
T Consensus        83 --~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~di~p~nill~~~~~~  158 (277)
T cd05032          83 --PTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKK--FVHRDLAARNCMVAEDLTV  158 (277)
T ss_pred             --CcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccccChheEEEcCCCCE
Confidence              5799999999999999886421        234789999999999999999999988  9999999999999999999


Q ss_pred             EEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhc
Q 007711          445 KLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLS  512 (592)
Q Consensus       445 ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~  512 (592)
                      ||+|||+++.......           .+.+++......++.++|||||||++||++| |+.||..  .+..+.......
T Consensus       159 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~--~~~~~~~~~~~~  236 (277)
T cd05032         159 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQG--LSNEEVLKFVID  236 (277)
T ss_pred             EECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCcc--CCHHHHHHHHhc
Confidence            9999999876532211           1222333333346889999999999999999 9999843  233332222221


Q ss_pred             CCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          513 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      . .         ....+..++..+.+++.+||+.+|++|||+.++++.|++
T Consensus       237 ~-~---------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  277 (277)
T cd05032         237 G-G---------HLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSLKD  277 (277)
T ss_pred             C-C---------CCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHhcC
Confidence            1 1         111122335679999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=1.2e-34  Score=290.95  Aligned_cols=245  Identities=18%  Similarity=0.281  Sum_probs=186.8

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCc----EEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGV----EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~----~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.+.||+|+||.||+|++. ++.    .||+|.+....    ......++.+|+.++..++|+||++++|+|...   ..
T Consensus        11 ~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~----~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~---~~   83 (279)
T cd05109          11 KVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENT----SPKANKEILDEAYVMAGVGSPYVCRLLGICLTS---TV   83 (279)
T ss_pred             eeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCC----CHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC---Cc
Confidence            4578999999999999853 444    36777765322    233466789999999999999999999999754   35


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++++||+++|+|.++++.. ...+++...+.++.+++.||+|||+.+  ++||||||+|||+++++.+||+|||+++...
T Consensus        84 ~l~~~~~~~g~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~--iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~  160 (279)
T cd05109          84 QLVTQLMPYGCLLDYVREN-KDRIGSQDLLNWCVQIAKGMSYLEEVR--LVHRDLAARNVLVKSPNHVKITDFGLARLLD  160 (279)
T ss_pred             EEEEEcCCCCCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccccccceEEEcCCCcEEECCCCceeecc
Confidence            7999999999999998643 346899999999999999999999998  9999999999999999999999999988653


Q ss_pred             hhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          457 MAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       457 ~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ....           .+.+++......++.++|||||||++|||+| |..||....  ...... .+.......      
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~--~~~~~~-~~~~~~~~~------  231 (279)
T cd05109         161 IDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIP--AREIPD-LLEKGERLP------  231 (279)
T ss_pred             cccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC--HHHHHH-HHHCCCcCC------
Confidence            2211           1222333233346789999999999999999 999984322  222111 111111110      


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                         .+..++..+.+++.+||+.||++||++.++++.|+++...+
T Consensus       232 ---~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~~  272 (279)
T cd05109         232 ---QPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARDP  272 (279)
T ss_pred             ---CCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcCC
Confidence               11223457889999999999999999999999999886654

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=7.2e-35  Score=292.89  Aligned_cols=248  Identities=19%  Similarity=0.322  Sum_probs=188.9

Q ss_pred             hhhcccCcCCCeEEEEEEeC-----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-----~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      .+.+.||+|+||.||+|++.     .+..+|||.+......    ...++|.+|++++++++|+||+++++++.......
T Consensus         7 ~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~----~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~   82 (284)
T cd05038           7 KFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE----QHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRS   82 (284)
T ss_pred             hhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch----HHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCc
Confidence            34578999999999999864     3678999987643321    34678999999999999999999999987744336


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++++||+++|+|.+++... ...++|..+..++.+++.||+|||+.+  ++|+||||+||+++.++.+||+|||++...
T Consensus        83 ~~lv~e~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~l~~aL~~lH~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  159 (284)
T cd05038          83 LRLIMEYLPSGSLRDYLQRH-RDQINLKRLLLFSSQICKGMDYLGSQR--YIHRDLAARNILVESEDLVKISDFGLAKVL  159 (284)
T ss_pred             eEEEEecCCCCCHHHHHHhC-ccccCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHhEEEcCCCCEEEccccccccc
Confidence            79999999999999998643 335899999999999999999999998  999999999999999999999999998876


Q ss_pred             hhhhh------------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCCh------------HHHHHHHh
Q 007711          456 AMAEM------------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL------------EDWAADYL  511 (592)
Q Consensus       456 ~~~~~------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~------------~~~~~~~~  511 (592)
                      .....            .+.+++......++.++||||||+++|||+||+.|+.......            .......+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (284)
T cd05038         160 PEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELL  239 (284)
T ss_pred             ccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHH
Confidence            52211            0112222222346788999999999999999999984322111            01111111


Q ss_pred             cCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          512 SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      .....         ...+..++.++.+++.+||+.+|++||+|.||+++|+++
T Consensus       240 ~~~~~---------~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         240 KEGER---------LPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             HcCCc---------CCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence            11000         011223446799999999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=9.7e-35  Score=296.73  Aligned_cols=255  Identities=21%  Similarity=0.340  Sum_probs=193.1

Q ss_pred             HHHHhhhhcccCcCCCeEEEEEEeC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeE
Q 007711          296 EAACEDFSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIG  366 (592)
Q Consensus       296 ~~~~~~~~~~lG~G~~g~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g  366 (592)
                      ......+.+.||+|+||.||++...        ....+|+|.+....    ......++..|+++++++ +|+||+++++
T Consensus        10 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~----~~~~~~~~~~E~~~l~~l~~h~~iv~~~~   85 (314)
T cd05099          10 PRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNA----TDKDLADLISEMELMKLIGKHKNIINLLG   85 (314)
T ss_pred             cHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCC----ChHHHHHHHHHHHHHHhccCCCCeeeEEE
Confidence            3344456789999999999999742        24568888765322    123456788999999999 6999999999


Q ss_pred             EEecCCCcceEEEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcC
Q 007711          367 FCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN  432 (592)
Q Consensus       367 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk  432 (592)
                      +|....  ..++++||+++|+|.+++....              ...++|...++++.+++.||.|||+.+  ++|||||
T Consensus        86 ~~~~~~--~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g--i~H~dlk  161 (314)
T cd05099          86 VCTQEG--PLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRR--CIHRDLA  161 (314)
T ss_pred             EEccCC--ceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCC--eeecccc
Confidence            998766  5799999999999999986421              245889999999999999999999998  9999999


Q ss_pred             CCCeEEcCCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCC
Q 007711          433 SSAVHLTEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDN  500 (592)
Q Consensus       433 ~~NiLl~~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~  500 (592)
                      |+||++++++.+||+|||+++.......           .+.+++......++.++|||||||++|||+| |+.||..  
T Consensus       162 p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~--  239 (314)
T cd05099         162 ARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPG--  239 (314)
T ss_pred             ceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCC--
Confidence            9999999999999999999986532111           1222333233346889999999999999999 8999842  


Q ss_pred             CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCC
Q 007711          501 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  570 (592)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~  570 (592)
                      ....+........ ...         ..+..++.++.+++.+||+.+|++||++.|+++.|+++.....+
T Consensus       240 ~~~~~~~~~~~~~-~~~---------~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~~~~~  299 (314)
T cd05099         240 IPVEELFKLLREG-HRM---------DKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLAAVSE  299 (314)
T ss_pred             CCHHHHHHHHHcC-CCC---------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHHhcC
Confidence            2333333222211 111         11223345788999999999999999999999999999765433

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=5.9e-35  Score=292.34  Aligned_cols=233  Identities=21%  Similarity=0.338  Sum_probs=172.3

Q ss_pred             ccCcCCCeEEEEEEeCC-------------------------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCC
Q 007711          305 VIGSSPIGTVYKGTLSN-------------------------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK  359 (592)
Q Consensus       305 ~lG~G~~g~Vy~g~~~~-------------------------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~  359 (592)
                      .||+|+||.||+|.+..                         ...|++|.+....     ......|.+|+.+++.++|+
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~-----~~~~~~~~~~~~~~~~l~h~   76 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSH-----RDIALAFFETASLMSQVSHI   76 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHH-----HHHHHHHHHHHHHHhcCCCC
Confidence            59999999999998521                         1346666654221     23456788999999999999


Q ss_pred             ceeeeeEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc
Q 007711          360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT  439 (592)
Q Consensus       360 niv~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~  439 (592)
                      ||++++|+|....  ..++||||+++|+|..++.. ....+++..+..++.|+++||+|||+.+  |+||||||+|||++
T Consensus        77 niv~~~~~~~~~~--~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~--iiH~dlkp~Nill~  151 (274)
T cd05076          77 HLAFVHGVCVRGS--ENIMVEEFVEHGPLDVCLRK-EKGRVPVAWKITVAQQLASALSYLEDKN--LVHGNVCAKNILLA  151 (274)
T ss_pred             CeeeEEEEEEeCC--ceEEEEecCCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHcCC--ccCCCCCcccEEEe
Confidence            9999999998876  67999999999999988863 3456889999999999999999999988  99999999999998


Q ss_pred             CCC-------ceEEecCCcchhhhhhh-----hhhcccccCC-CCCCCCCCcchhhHHHHHHHH-hCCCcccCCCCChHH
Q 007711          440 EDY-------AAKLSDLSFWNEIAMAE-----MAATSKKLSS-APSASLESNVYNFGVLLFEMV-TGRLPYLVDNGSLED  505 (592)
Q Consensus       440 ~~~-------~~ki~DfGla~~~~~~~-----~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~-tG~~P~~~~~~~~~~  505 (592)
                      +++       .+|++|||++.......     ..+.+++... ...++.++|||||||++||++ +|+.||......  +
T Consensus       152 ~~~~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~--~  229 (274)
T cd05076         152 RLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPS--E  229 (274)
T ss_pred             ccCcccCccceeeecCCccccccccccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChH--H
Confidence            643       47999999876432111     1122333222 234678899999999999995 699998533221  1


Q ss_pred             HHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 007711          506 WAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL  561 (592)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L  561 (592)
                      .. .........           +......+.+++.+||+.+|++||+|.++++.|
T Consensus       230 ~~-~~~~~~~~~-----------~~~~~~~~~~li~~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         230 KE-RFYEKKHRL-----------PEPSCKELATLISQCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             HH-HHHHhccCC-----------CCCCChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence            11 111111111           111123588999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.3e-35  Score=285.99  Aligned_cols=239  Identities=22%  Similarity=0.368  Sum_probs=194.0

Q ss_pred             HhhhhcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          299 CEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +++|.+.||+|.||.|-++. ...|+.||||.+.+...++  ......+++||++|+.++||||+.++.++...+  ...
T Consensus        54 RyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkd--eqDlvhIRREIeIMSsLNHPhII~IyEVFENkd--KIv  129 (668)
T KOG0611|consen   54 RYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKD--EQDLVHIRREIEIMSSLNHPHIIQIYEVFENKD--KIV  129 (668)
T ss_pred             HHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhccc--HHHHHHHHHHHHHHhhcCCCceeehhhhhcCCc--eEE
Confidence            44566789999999999998 4679999999987666554  334556889999999999999999999998887  789


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      |||||..+|.|++++..  .+.++......+.+||..|+.|+|..+  ++|||||.+|||+|++.++||+|||++..+..
T Consensus       130 ivMEYaS~GeLYDYiSe--r~~LsErEaRhfFRQIvSAVhYCHknr--VvHRDLKLENILLD~N~NiKIADFGLSNly~~  205 (668)
T KOG0611|consen  130 IVMEYASGGELYDYISE--RGSLSEREARHFFRQIVSAVHYCHKNR--VVHRDLKLENILLDQNNNIKIADFGLSNLYAD  205 (668)
T ss_pred             EEEEecCCccHHHHHHH--hccccHHHHHHHHHHHHHHHHHHhhcc--ceecccchhheeecCCCCeeeeccchhhhhcc
Confidence            99999999999999974  467899999999999999999999998  99999999999999999999999999987754


Q ss_pred             hhh--------hhccccc-CCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          458 AEM--------AATSKKL-SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       458 ~~~--------~~~~~~~-~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      ...        .+.+++. ...|.-..++|-||+||+||.|+.|..||++  .+-...++++-.+..     ..|.    
T Consensus       206 ~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG--~Dhk~lvrQIs~GaY-----rEP~----  274 (668)
T KOG0611|consen  206 KKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDG--RDHKRLVRQISRGAY-----REPE----  274 (668)
T ss_pred             ccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCC--chHHHHHHHhhcccc-----cCCC----
Confidence            332        2333332 3445567889999999999999999999953  344445555444421     1121    


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                         .+....-|+++++..+|++|.|+.+|..
T Consensus       275 ---~PSdA~gLIRwmLmVNP~RRATieDiAs  302 (668)
T KOG0611|consen  275 ---TPSDASGLIRWMLMVNPERRATIEDIAS  302 (668)
T ss_pred             ---CCchHHHHHHHHHhcCcccchhHHHHhh
Confidence               2234678999999999999999999975

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=5e-35  Score=295.04  Aligned_cols=242  Identities=22%  Similarity=0.357  Sum_probs=186.6

Q ss_pred             hhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          302 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.||+|+||.||++...      ++..+++|.+....    ......+|.+|++++++++|+||++++++|....  .
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~----~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~--~   82 (288)
T cd05050           9 YVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA----SADMQADFQREAALMAEFDHPNIVKLLGVCAVGK--P   82 (288)
T ss_pred             ecccccccccccEEEEEEcccCCCCcceeEEEEecCCCc----CHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCC--c
Confidence            4578999999999999863      46788888775322    1234567999999999999999999999998776  5


Q ss_pred             eEEEEeeCCCCCchhhccccC--------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCC
Q 007711          376 RMMVFEYAPNGTLFEHIHIKE--------------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSA  435 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~--------------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~N  435 (592)
                      .++++||+++|+|.+++....                    ...+++..++.++.+++.||+|||+.+  ++||||||+|
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~--i~H~dl~p~n  160 (288)
T cd05050          83 MCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERK--FVHRDLATRN  160 (288)
T ss_pred             cEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC--eecccccHhh
Confidence            699999999999999986321                    134788899999999999999999998  9999999999


Q ss_pred             eEEcCCCceEEecCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCCh
Q 007711          436 VHLTEDYAAKLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSL  503 (592)
Q Consensus       436 iLl~~~~~~ki~DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~  503 (592)
                      |++++++.+||+|||+++......           ..+.+++......++.++|||||||++|||++ |..||.  ....
T Consensus       161 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~--~~~~  238 (288)
T cd05050         161 CLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYY--GMAH  238 (288)
T ss_pred             eEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCC--CCCH
Confidence            999999999999999987542211           11222333333346889999999999999998 888984  2333


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          504 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      .++......+. .         ...+...+.++.+++.+||+.+|++||++.|+++.|++
T Consensus       239 ~~~~~~~~~~~-~---------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         239 EEVIYYVRDGN-V---------LSCPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             HHHHHHHhcCC-C---------CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence            44443332221 1         11122344679999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=6.9e-35  Score=298.98  Aligned_cols=231  Identities=19%  Similarity=0.225  Sum_probs=176.8

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHH-HHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKID-TLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~-~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||+|+.. +|..||+|++.......  .....++..|.. +++.++||||+++++++...+  ..++|||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~--~~~lv~e   76 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILK--KKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTAD--KLYFVLD   76 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhh--hhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCC--EEEEEEc
Confidence            36999999999999964 68899999986533211  122344555554 567899999999999998776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh---
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~---  458 (592)
                      |+++|+|.+++..  ...+++.....++.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++.....   
T Consensus        77 ~~~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~g--ivH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~  152 (323)
T cd05575          77 YVNGGELFFHLQR--ERSFPEPRARFYAAEIASALGYLHSLN--IIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKT  152 (323)
T ss_pred             CCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCc
Confidence            9999999988863  346888899999999999999999998  999999999999999999999999998753211   


Q ss_pred             ------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          459 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       459 ------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            ...+.+|+......++.++|||||||++|||+||+.||..  .+..+............           +...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~--~~~~~~~~~i~~~~~~~-----------~~~~  219 (323)
T cd05575         153 TSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYS--RDTAEMYDNILNKPLRL-----------KPNI  219 (323)
T ss_pred             cccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCC--CCHHHHHHHHHcCCCCC-----------CCCC
Confidence                  1123344444444578899999999999999999999943  33444444443321111           1122


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMR  555 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~  555 (592)
                      +..+.+++.+|++.||.+||++.
T Consensus       220 ~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         220 SVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             CHHHHHHHHHHhhcCHHhCCCCC
Confidence            35688999999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=4.6e-35  Score=294.70  Aligned_cols=248  Identities=19%  Similarity=0.275  Sum_probs=186.8

Q ss_pred             hhhcccCcCCCeEEEEEEe-----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          301 DFSNVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      ...+.||+|+||.||.+.+     .++..+++|.+.....    ......|.+|++++++++|+||+++++++...+...
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (284)
T cd05079           7 KRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG----GNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG   82 (284)
T ss_pred             hhceecCCCCceeEEEEEEccCCCCccceEEEEEcCcccc----HHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCc
Confidence            3457899999999999985     3477899998754321    233567999999999999999999999998753335


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++++|.+++... ...++|..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++..
T Consensus        83 ~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~i~~~i~~aL~~lH~~g--i~H~dlkp~Nil~~~~~~~~l~dfg~~~~~  159 (284)
T cd05079          83 IKLIMEFLPSGSLKEYLPRN-KNKINLKQQLKYAVQICKGMDYLGSRQ--YVHRDLAARNVLVESEHQVKIGDFGLTKAI  159 (284)
T ss_pred             eEEEEEccCCCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecccchheEEEcCCCCEEECCCcccccc
Confidence            78999999999999998643 346899999999999999999999998  999999999999999999999999998865


Q ss_pred             hhhhh------------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC-------------ChHHHHHHH
Q 007711          456 AMAEM------------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-------------SLEDWAADY  510 (592)
Q Consensus       456 ~~~~~------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-------------~~~~~~~~~  510 (592)
                      .....            .+.+++......++.++|||||||++|||+|++.|......             ....+.. .
T Consensus       160 ~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  238 (284)
T cd05079         160 ETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVR-V  238 (284)
T ss_pred             ccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHH-H
Confidence            32211            11222322333467899999999999999998776521110             0011111 1


Q ss_pred             hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          511 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      ....         .....+..++..+.+++.+||+.+|++||++.++++.|+++.
T Consensus       239 ~~~~---------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~~  284 (284)
T cd05079         239 LEEG---------KRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAIL  284 (284)
T ss_pred             HHcC---------ccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhhC
Confidence            1110         001112234567999999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=8.1e-35  Score=292.29  Aligned_cols=241  Identities=22%  Similarity=0.376  Sum_probs=183.7

Q ss_pred             hhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          302 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.++||+|+||.||++...      ++..+++|.+....     ......|.+|++++++++|+||+++++++....  .
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~   81 (280)
T cd05092           9 LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS-----ESARQDFQREAELLTVLQHQHIVRFYGVCTEGR--P   81 (280)
T ss_pred             eccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCC-----HHHHHHHHHHHHHHhcCCCCCCceEEEEEecCC--c
Confidence            4578999999999999742      35567777654322     234568999999999999999999999998776  5


Q ss_pred             eEEEEeeCCCCCchhhccccCC-------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC
Q 007711          376 RMMVFEYAPNGTLFEHIHIKES-------------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY  442 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~-------------~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~  442 (592)
                      .++++||+++|+|.++++....             ..+++..++.++.+++.|++|||+.+  ++||||||+||++++++
T Consensus        82 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~--i~H~dlkp~nil~~~~~  159 (280)
T cd05092          82 LLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLH--FVHRDLATRNCLVGQGL  159 (280)
T ss_pred             eEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCC--eecccccHhhEEEcCCC
Confidence            6999999999999998864321             35889999999999999999999998  99999999999999999


Q ss_pred             ceEEecCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHH
Q 007711          443 AAKLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADY  510 (592)
Q Consensus       443 ~~ki~DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~  510 (592)
                      .+||+|||+++......           ..+.+++......++.++|||||||++|||+| |+.||...  ...+.....
T Consensus       160 ~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~--~~~~~~~~~  237 (280)
T cd05092         160 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQL--SNTEAIECI  237 (280)
T ss_pred             CEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccC--CHHHHHHHH
Confidence            99999999987542211           11222333333346889999999999999999 99998422  222222222


Q ss_pred             hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          511 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      ..... .         ..+..++..+.+++.+||+.||.+||++.||.+.|++
T Consensus       238 ~~~~~-~---------~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~~  280 (280)
T cd05092         238 TQGRE-L---------ERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQA  280 (280)
T ss_pred             HcCcc-C---------CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHhC
Confidence            22211 1         1112234568899999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=1.1e-34  Score=296.57  Aligned_cols=234  Identities=20%  Similarity=0.249  Sum_probs=175.5

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc-CCCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK-VNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~-l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||+|... ++..||+|.+.......  ....+.+..|..++.. .+||||+++++++...+  ..++|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~--~~~lv~e   76 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLE--DDDVECTMVERRVLALAWEHPFLTHLFCTFQTKE--HLFFVME   76 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhhHHHHHHHHHHHHhccCCCCccceeeEEEcCC--EEEEEEc
Confidence            36999999999999964 57889999886543211  1223445566677665 48999999999988776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh---
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~---  458 (592)
                      |+++|+|.+++..  ...+++.....++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....   
T Consensus        77 ~~~gg~L~~~~~~--~~~~~~~~~~~~~~qi~~al~~LH~~~--ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~  152 (316)
T cd05592          77 YLNGGDLMFHIQS--SGRFDEARARFYAAEIICGLQFLHKKG--IIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGK  152 (316)
T ss_pred             CCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--EEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCc
Confidence            9999999988863  346888899999999999999999998  999999999999999999999999998754211   


Q ss_pred             ------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          459 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       459 ------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            ...+.+++......++.++|||||||++|||++|+.||...  ...+..........           .++...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~--~~~~~~~~i~~~~~-----------~~~~~~  219 (316)
T cd05592         153 ASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGE--DEDELFDSILNDRP-----------HFPRWI  219 (316)
T ss_pred             cccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCC--CHHHHHHHHHcCCC-----------CCCCCC
Confidence                  11222333333334688999999999999999999999532  23333333222111           112223


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHH-HHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMR-DIA  558 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~-ev~  558 (592)
                      ...+.+++.+||+.||++||++. ++.
T Consensus       220 ~~~~~~ll~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05592         220 SKEAKDCLSKLFERDPTKRLGVDGDIR  246 (316)
T ss_pred             CHHHHHHHHHHccCCHHHcCCChHHHH
Confidence            35688999999999999999875 443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=1.7e-34  Score=285.80  Aligned_cols=239  Identities=22%  Similarity=0.382  Sum_probs=186.7

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||.||+|.+.++..+++|.+.....      ...+|.+|++++++++|+|++++++++....  ..++|+
T Consensus         7 ~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~   78 (256)
T cd05112           7 TLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM------SEEDFIEEAQVMMKLSHPKLVQLYGVCTERS--PICLVF   78 (256)
T ss_pred             EEEeeecCcccceEEEEEEeCCCeEEEEECCCCCC------CHHHHHHHHHHHHhCCCCCeeeEEEEEccCC--ceEEEE
Confidence            34578999999999999987788899998753322      2357899999999999999999999988776  569999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++... ...+++..+..++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||+++...... 
T Consensus        79 e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  155 (256)
T cd05112          79 EFMEHGCLSDYLRAQ-RGKFSQETLLGMCLDVCEGMAYLESSN--VIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQY  155 (256)
T ss_pred             EcCCCCcHHHHHHhC-ccCCCHHHHHHHHHHHHHHHHHHHHCC--ccccccccceEEEcCCCeEEECCCcceeecccCcc
Confidence            999999999988643 245789999999999999999999998  9999999999999999999999999987543211 


Q ss_pred             ---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          460 ---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       460 ---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                               ..+.+++......++.++|||||||++|||++ |+.||..  ....+.......+..    ...+.     
T Consensus       156 ~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~~~----~~~~~-----  224 (256)
T cd05112         156 TSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYEN--RSNSEVVETINAGFR----LYKPR-----  224 (256)
T ss_pred             cccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCc--CCHHHHHHHHhCCCC----CCCCC-----
Confidence                     11233343333446778999999999999998 9999943  333333333322211    11111     


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                       ..+..+.+++.+||+.+|++||++.|+++.|+
T Consensus       225 -~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l~  256 (256)
T cd05112         225 -LASQSVYELMQHCWKERPEDRPSFSLLLHQLA  256 (256)
T ss_pred             -CCCHHHHHHHHHHcccChhhCCCHHHHHHhhC
Confidence             12357999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=7.5e-35  Score=298.44  Aligned_cols=235  Identities=17%  Similarity=0.206  Sum_probs=180.4

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||+|+.. ++..+|+|++.......  ....+.+..|.+++..+ +||||+++++++...+  ..++|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~--~~~lv~E   76 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQ--DDDVDCTMTEKRILALAAKHPFLTALHCCFQTKD--RLFFVME   76 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhh--hhHHHHHHHHHHHHHhccCCCCccceeeEEEcCC--eEEEEEe
Confidence            36999999999999965 47899999886532211  22345677888888876 7999999999998877  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh---
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~---  458 (592)
                      |+++|+|..++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....   
T Consensus        77 ~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~  152 (321)
T cd05591          77 YVNGGDLMFQIQR--SRKFDEPRSRFYAAEVTLALMFLHRHG--VIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVT  152 (321)
T ss_pred             CCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHeEECCCCCEEEeecccceecccCCcc
Confidence            9999999988863  346889999999999999999999998  999999999999999999999999998753211   


Q ss_pred             ------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          459 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       459 ------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            ...+.+++......++.++|||||||++|||+||+.||..  ....+.......+...           .+...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~~~  219 (321)
T cd05591         153 TTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEA--DNEDDLFESILHDDVL-----------YPVWL  219 (321)
T ss_pred             ccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCC--CCHHHHHHHHHcCCCC-----------CCCCC
Confidence                  1122333333334478899999999999999999999953  3334444443332111           11122


Q ss_pred             HHHHHHHHHHhcccCCCCCC-------CHHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRP-------TMRDIAA  559 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RP-------s~~ev~~  559 (592)
                      ..++.+++.+||+.||++||       ++.++++
T Consensus       220 ~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~  253 (321)
T cd05591         220 SKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQ  253 (321)
T ss_pred             CHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhc
Confidence            35688999999999999999       6776653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-35  Score=286.85  Aligned_cols=251  Identities=22%  Similarity=0.386  Sum_probs=191.1

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc--CCCCceeeeeEEEecCCC--cce
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK--VNHKNFVNLIGFCEEEEP--FTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~--l~H~niv~l~g~~~~~~~--~~~  376 (592)
                      .+.+.||+|.||+||+|.| .|..||||++....        ++.+.+|.++.+.  +||+||+.+++.-..+..  .+.
T Consensus       214 ~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~srd--------E~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQL  284 (513)
T KOG2052|consen  214 VLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSSRD--------ERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQL  284 (513)
T ss_pred             EEEEEecCccccceeeccc-cCCceEEEEecccc--------hhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEE
Confidence            3458899999999999999 57899999986443        4568888888876  499999999987654432  257


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCeEeeCcCCCCeEEcCCCceEEecCC
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ------LNPPIAHNYLNSSAVHLTEDYAAKLSDLS  450 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~------~~~~ivH~dLk~~NiLl~~~~~~ki~DfG  450 (592)
                      +||++|.++|||+|+|..   ..++-...++++..+|.||+|||-      .+|.|.|||||+.|||+..++.+-|+|+|
T Consensus       285 wLvTdYHe~GSL~DyL~r---~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLG  361 (513)
T KOG2052|consen  285 WLVTDYHEHGSLYDYLNR---NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG  361 (513)
T ss_pred             EEeeecccCCcHHHHHhh---ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeece
Confidence            899999999999999963   568889999999999999999993      46899999999999999999999999999


Q ss_pred             cchhhhhhh-------hhhcccccCCCCCC------------CCCCcchhhHHHHHHHHhC----------CCcccC---
Q 007711          451 FWNEIAMAE-------MAATSKKLSSAPSA------------SLESNVYNFGVLLFEMVTG----------RLPYLV---  498 (592)
Q Consensus       451 la~~~~~~~-------~~~~~~~~~~~~~~------------s~ksDVwSfGvvl~El~tG----------~~P~~~---  498 (592)
                      +|.......       .....+..|++||+            -..+||||||.|+||+.-+          +.||..   
T Consensus       362 LAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp  441 (513)
T KOG2052|consen  362 LAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVP  441 (513)
T ss_pred             eeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCC
Confidence            998764332       12233456788874            1237999999999999753          357642   


Q ss_pred             CCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          499 DNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      .+.+.++. ++.... +.+...++...  ...++...+.++|+.||..+|..|-|+-.+.+.|.++.+.
T Consensus       442 ~DPs~eeM-rkVVCv-~~~RP~ipnrW--~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~~  506 (513)
T KOG2052|consen  442 SDPSFEEM-RKVVCV-QKLRPNIPNRW--KSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSNS  506 (513)
T ss_pred             CCCCHHHH-hcceee-cccCCCCCccc--ccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhcC
Confidence            22233322 121111 12222222221  2356778899999999999999999999999999998764

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1e-35  Score=287.87  Aligned_cols=243  Identities=19%  Similarity=0.261  Sum_probs=179.2

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc---ceEE
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF---TRMM  378 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~---~~~l  378 (592)
                      .+++|.|+||.||+|.. .++..||||++-....-         --+|+++|++++|||||+|+-++......   ...+
T Consensus        29 ~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~---------knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnl   99 (364)
T KOG0658|consen   29 VRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRY---------KNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNL   99 (364)
T ss_pred             eEEEeecccceEEEEEEcCCCceeEEEEecCCCCc---------CcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHH
Confidence            36899999999999996 45789999987543321         13689999999999999999888754432   3468


Q ss_pred             EEeeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC-CceEEecCCcchhh
Q 007711          379 VFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEI  455 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~-~~~ki~DfGla~~~  455 (592)
                      |+||||. +|++.++..  ....++.-...-+..|+.+||+|||+.+  |+||||||.|+|+|.+ +.+||||||.|+.+
T Consensus       100 VleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~--IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L  176 (364)
T KOG0658|consen  100 VLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHG--ICHRDIKPQNLLVDPDTGVLKICDFGSAKVL  176 (364)
T ss_pred             HHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcC--cccCCCChheEEEcCCCCeEEeccCCcceee
Confidence            9999987 898888731  2345555556668899999999999988  9999999999999976 89999999999988


Q ss_pred             hhhhh--hhcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHh-----------cC--
Q 007711          456 AMAEM--AATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL-----------SG--  513 (592)
Q Consensus       456 ~~~~~--~~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~-----------~~--  513 (592)
                      ..++.  .+-...++++||       |+.+.||||.|||+.||+-|+.-|.++..  .+....+.           ..  
T Consensus       177 ~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~--~dQL~eIik~lG~Pt~e~I~~mn  254 (364)
T KOG0658|consen  177 VKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSS--VDQLVEIIKVLGTPTREDIKSMN  254 (364)
T ss_pred             ccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCH--HHHHHHHHHHhCCCCHHHHhhcC
Confidence            65442  334445666665       89999999999999999999999965332  22111111           00  


Q ss_pred             ----CCCCccccCCCCCC-CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          514 ----VQPLQQFVDPTLSS-FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       514 ----~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          .....++....... +......+..+++.++++.+|.+|.++.|++.
T Consensus       255 ~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~  305 (364)
T KOG0658|consen  255 PNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALA  305 (364)
T ss_pred             cccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhc
Confidence                01111221111111 22334567889999999999999999998875

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-34  Score=286.48  Aligned_cols=241  Identities=17%  Similarity=0.219  Sum_probs=184.8

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+.||+|++|.||++.. .++..+++|.+.............+.+.+|++++++++||||+++++++...+  ..++|+
T Consensus         6 ~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~   83 (263)
T cd06625           6 RGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDE--TLSIFM   83 (263)
T ss_pred             ccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCC--eEEEEE
Confidence            357899999999999985 46889999987654332222233467889999999999999999999998877  789999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++++|.+++..  ...+++....+++.+++.|++|||+.+  ++||||+|+||++++++.+||+|||+++...... 
T Consensus        84 e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~  159 (263)
T cd06625          84 EYMPGGSVKDQLKA--YGALTETVTRKYTRQILEGVEYLHSNM--IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICS  159 (263)
T ss_pred             EECCCCcHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEeecccceecccccc
Confidence            99999999998863  345788889999999999999999999  9999999999999999999999999987543211 


Q ss_pred             -----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          460 -----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       460 -----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                                 ..+.+++......++.++||||||+++|||++|+.||...  +.............         ....
T Consensus       160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~--~~~~~~~~~~~~~~---------~~~~  228 (263)
T cd06625         160 SGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEF--EAMAAIFKIATQPT---------NPQL  228 (263)
T ss_pred             ccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCcccc--chHHHHHHHhccCC---------CCCC
Confidence                       1122233333333678999999999999999999999432  22221112111110         0112


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      +......+.+++.+||..+|++||++.|+++
T Consensus       229 ~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  259 (263)
T cd06625         229 PSHVSPDARNFLRRTFVENAKKRPSAEELLR  259 (263)
T ss_pred             CccCCHHHHHHHHHHhhcCcccCCCHHHHhh
Confidence            2334457889999999999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.4e-34  Score=288.81  Aligned_cols=246  Identities=21%  Similarity=0.332  Sum_probs=188.5

Q ss_pred             hhhhcccCcCCCeEEEEEEeCCC----cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSNG----VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~~----~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      ..+.+.||+|+||.||+|.+.+.    ..+++|.......    ....+.|.+|+.++++++|+||++++++|...   .
T Consensus         8 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~----~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~---~   80 (270)
T cd05056           8 ITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTS----PSVREKFLQEAYIMRQFDHPHIVKLIGVITEN---P   80 (270)
T ss_pred             ceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCC----HHHHHHHHHHHHHHHhCCCCchhceeEEEcCC---C
Confidence            44568899999999999986432    4577776643321    23456899999999999999999999998754   3


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++|+|.+++... ...+++..+..++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||+++..
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~lH~~~--~~H~dl~p~nili~~~~~~~l~d~g~~~~~  157 (270)
T cd05056          81 VWIVMELAPLGELRSYLQVN-KYSLDLASLILYSYQLSTALAYLESKR--FVHRDIAARNVLVSSPDCVKLGDFGLSRYL  157 (270)
T ss_pred             cEEEEEcCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccccChheEEEecCCCeEEccCceeeec
Confidence            57999999999999998643 346899999999999999999999998  999999999999999999999999998765


Q ss_pred             hhhhh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          456 AMAEM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       456 ~~~~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      .....          .+.+++......++.++|||||||++||+++ |+.||....  ..+.......+ ...       
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~--~~~~~~~~~~~-~~~-------  227 (270)
T cd05056         158 EDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVK--NNDVIGRIENG-ERL-------  227 (270)
T ss_pred             ccccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHcC-CcC-------
Confidence            32211          1223333333346788999999999999997 999995332  22222222111 111       


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                        ..+..++..+.+++.+||..+|++||++.+++..|+++...
T Consensus       228 --~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~~  268 (270)
T cd05056         228 --PMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQE  268 (270)
T ss_pred             --CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence              11223445799999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=6.7e-35  Score=314.12  Aligned_cols=239  Identities=17%  Similarity=0.264  Sum_probs=184.1

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-C-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-N-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.+.||+|+||.||+|... + +..|++|.+....     ......+..|+.+++.++|||||++++++...+  ..+
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~-----~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~--~~~  141 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLND-----ERQAAYARSELHCLAACDHFGIVKHFDDFKSDD--KLL  141 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCC-----HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECC--EEE
Confidence            345688999999999999853 3 5677777653322     223456788999999999999999999998877  789


Q ss_pred             EEEeeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          378 MVFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      +||||+++|+|.++++..  ....+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++..
T Consensus       142 lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~--ivHrDlkp~NIll~~~~~~kL~DFgla~~~  219 (478)
T PTZ00267        142 LIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRK--MMHRDLKSANIFLMPTGIIKLGDFGFSKQY  219 (478)
T ss_pred             EEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC--EEECCcCHHhEEECCCCcEEEEeCcCceec
Confidence            999999999999887532  3446888899999999999999999998  999999999999999999999999999865


Q ss_pred             hhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          456 AMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       456 ~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ....           ..+.+++......++.++|||||||++|||+||+.||..  ....+.......+...        
T Consensus       220 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~--~~~~~~~~~~~~~~~~--------  289 (478)
T PTZ00267        220 SDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKG--PSQREIMQQVLYGKYD--------  289 (478)
T ss_pred             CCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCC--------
Confidence            3221           112233333333478899999999999999999999943  3333444443332111        


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        ..+...+..+.+++.+||+.||++||++++++.
T Consensus       290 --~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        290 --PFPCPVSSGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             --CCCccCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence              112223356899999999999999999999864

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=7.6e-35  Score=293.72  Aligned_cols=246  Identities=15%  Similarity=0.200  Sum_probs=179.5

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... ++..||+|.+......    .....+.+|++++++++||||+++++++....  ..++||
T Consensus         9 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~lv~   82 (288)
T cd07871           9 KLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEE----GAPCTAIREVSLLKNLKHANIVTLHDIIHTER--CLTLVF   82 (288)
T ss_pred             EeeEEecCCCEEEEEEEECCCCCEEEEEEecccccC----CcchhHHHHHHHHHhCCCCCEeeEEEEEcCCC--eEEEEE
Confidence            4578999999999999864 6889999988643322    12346778999999999999999999998766  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||++ |+|.+++.. ....+++.....++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++...... 
T Consensus        83 e~~~-~~l~~~l~~-~~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~  158 (288)
T cd07871          83 EYLD-SDLKQYLDN-CGNLMSMHNVKIFMFQLLRGLSYCHKRK--ILHRDLKPQNLLINEKGELKLADFGLARAKSVPTK  158 (288)
T ss_pred             eCCC-cCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEECCCCCEEECcCcceeeccCCCc
Confidence            9997 589888753 2345788999999999999999999998  9999999999999999999999999987543211 


Q ss_pred             --------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCC--------------CC
Q 007711          460 --------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV--------------QP  516 (592)
Q Consensus       460 --------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~--------------~~  516 (592)
                              ..+.+|+... ...++.++|||||||++|||+||+.||....  ..+.........              ..
T Consensus       159 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (288)
T cd07871         159 TYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGST--VKEELHLIFRLLGTPTEETWPGITSNEE  236 (288)
T ss_pred             cccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCChHHhhccccchh
Confidence                    1222333222 2346788999999999999999999995332  222221111100              00


Q ss_pred             CccccCCCCC-----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          517 LQQFVDPTLS-----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       517 ~~~~~~~~~~-----~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      +.....+...     ........+..+++.+|++.||.+|||++|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         237 FRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             hhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            0001111100     000112356789999999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=1.6e-34  Score=285.75  Aligned_cols=238  Identities=24%  Similarity=0.389  Sum_probs=186.3

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||.||+|.. .+..+++|.+....       ....|.+|+.++++++|+|++++++++....   .++||
T Consensus         9 ~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~-------~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~---~~~v~   77 (254)
T cd05083           9 TLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV-------TAQAFLEETAVMTKLHHKNLVRLLGVILHNG---LYIVM   77 (254)
T ss_pred             eeeeeeccCCCCceEeccc-CCCceEEEeecCcc-------hHHHHHHHHHHHHhCCCCCcCeEEEEEcCCC---cEEEE
Confidence            4567899999999999985 67788998874321       2457899999999999999999999987643   58999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++.......+++..+..++.+++.|+.|||+.+  ++||||||+||+++.++.+||+|||+++...... 
T Consensus        78 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~  155 (254)
T cd05083          78 ELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKK--LVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVD  155 (254)
T ss_pred             ECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccccCcceEEEcCCCcEEECCCccceeccccCC
Confidence            9999999999997655556899999999999999999999988  9999999999999999999999999987543221 


Q ss_pred             -----hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          460 -----MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       460 -----~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                           ..+.+++......++.++|||||||++|||++ |+.||..  ....+.......+ ...    +     .+...+
T Consensus       156 ~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~-~~~----~-----~~~~~~  223 (254)
T cd05083         156 NSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPK--MSLKEVKECVEKG-YRM----E-----PPEGCP  223 (254)
T ss_pred             CCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCcc--CCHHHHHHHHhCC-CCC----C-----CCCcCC
Confidence                 11233343334457789999999999999998 9999843  2333333332221 111    0     112234


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      ..+.+++.+||+.+|++||++.++++.|++
T Consensus       224 ~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         224 ADVYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence            578899999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.8e-34  Score=286.48  Aligned_cols=247  Identities=18%  Similarity=0.286  Sum_probs=189.9

Q ss_pred             hhhcccCcCCCeEEEEEEeCC-Cc----EEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          301 DFSNVIGSSPIGTVYKGTLSN-GV----EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~-~~----~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      .+.+.||+|+||.||+|.+++ |.    .+++|......    ......++.+|+.++++++|+||++++++|.. .  .
T Consensus        10 ~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~--~   82 (279)
T cd05057          10 EKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREET----SPKANKEILDEAYVMASVDHPHVVRLLGICLS-S--Q   82 (279)
T ss_pred             EEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCC----CHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-C--c
Confidence            345789999999999999643 32    46777654332    13345678999999999999999999999987 3  5


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++|+||+++|+|.+++... ...+++....+++.|++.|++|||+++  ++||||||+||++++++.+||+|||+++..
T Consensus        83 ~~~v~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~--i~H~di~p~nil~~~~~~~kL~dfg~~~~~  159 (279)
T cd05057          83 VQLITQLMPLGCLLDYVRNH-KDNIGSQYLLNWCVQIAKGMSYLEEKR--LVHRDLAARNVLVKTPQHVKITDFGLAKLL  159 (279)
T ss_pred             eEEEEecCCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhCC--EEecccCcceEEEcCCCeEEECCCcccccc
Confidence            68999999999999998643 345899999999999999999999988  999999999999999999999999999865


Q ss_pred             hhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          456 AMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       456 ~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      .....           .+.+++......++.++||||||+++||++| |+.||..  ....++........ ..      
T Consensus       160 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~~-~~------  230 (279)
T cd05057         160 DVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEG--IPAVEIPDLLEKGE-RL------  230 (279)
T ss_pred             cCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCC--CCHHHHHHHHhCCC-CC------
Confidence            42221           1122222222335788999999999999999 9999943  33444443333221 11      


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                         ..+..+...+.+++.+||..+|++||++.++++.|+++.+..+
T Consensus       231 ---~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~~~  273 (279)
T cd05057         231 ---PQPPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMARDPQ  273 (279)
T ss_pred             ---CCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhCCc
Confidence               1111233468899999999999999999999999999976544

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=8.7e-35  Score=297.72  Aligned_cols=230  Identities=20%  Similarity=0.224  Sum_probs=177.0

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||+|+.. ++..||+|.+.......  ....+.+..|.+++..+ +||||+++++++...+  ..++|||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~--~~~iv~E   76 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQ--DDDVECTMTEKRILSLARNHPFLTQLYCCFQTPD--RLFFVME   76 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhh--ccHHHHHHHHHHHHHhccCCCchhceeeEEEcCC--EEEEEEc
Confidence            36999999999999964 57899999886432111  12345677888888876 6999999999998776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh---
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~---  458 (592)
                      |+++|+|.+++..  ...+++.....++.+++.||+|||+.+  ++||||||+|||++.++.+||+|||+++.....   
T Consensus        77 y~~~g~L~~~i~~--~~~l~~~~~~~~~~ql~~~L~~lH~~~--ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~  152 (320)
T cd05590          77 FVNGGDLMFHIQK--SRRFDEARARFYAAEITSALMFLHDKG--IIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKT  152 (320)
T ss_pred             CCCCchHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCc
Confidence            9999999988863  346889999999999999999999998  999999999999999999999999998753211   


Q ss_pred             ------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          459 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       459 ------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            ...+.+|+......++.++|||||||++|||+||+.||..  ....+...........           .+...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~--~~~~~~~~~i~~~~~~-----------~~~~~  219 (320)
T cd05590         153 TSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEA--ENEDDLFEAILNDEVV-----------YPTWL  219 (320)
T ss_pred             ccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCC--CCHHHHHHHHhcCCCC-----------CCCCC
Confidence                  1122233333333468899999999999999999999943  3333443333332111           11123


Q ss_pred             HHHHHHHHHHhcccCCCCCCCH
Q 007711          533 LETLGELIKSCVRADPEKRPTM  554 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~  554 (592)
                      ...+.+++.+|++.||++||++
T Consensus       220 ~~~~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         220 SQDAVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             CHHHHHHHHHHcccCHHHCCCC
Confidence            3568899999999999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=1.8e-34  Score=302.64  Aligned_cols=241  Identities=17%  Similarity=0.255  Sum_probs=178.2

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+. .++..+|+|++.......  ....+.+.+|++++.+++|+||+++++++.+.+  ..++||
T Consensus         5 ~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~--~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~--~~~lv~   80 (381)
T cd05626           5 KIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLN--RNQVAHVKAERDILAEADNEWVVKLYYSFQDKD--NLYFVM   80 (381)
T ss_pred             EEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCC--EEEEEE
Confidence            357899999999999985 467899999886543221  233567899999999999999999999998876  689999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.+.... 
T Consensus        81 E~~~gg~L~~~l~~--~~~~~e~~~~~~~~qi~~aL~~LH~~g--ivHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~  156 (381)
T cd05626          81 DYIPGGDMMSLLIR--MEVFPEVLARFYIAELTLAIESVHKMG--FIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHN  156 (381)
T ss_pred             ecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecCCcHHHEEECCCCCEEEeeCcCCcccccccc
Confidence            99999999999863  345788888899999999999999998  9999999999999999999999999975431000 


Q ss_pred             -------------------------------------------------hhhcccccCCCCC------CCCCCcchhhHH
Q 007711          460 -------------------------------------------------MAATSKKLSSAPS------ASLESNVYNFGV  484 (592)
Q Consensus       460 -------------------------------------------------~~~~~~~~~~~~~------~s~ksDVwSfGv  484 (592)
                                                                       .....+..+++||      ++.++|||||||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~  236 (381)
T cd05626         157 SKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGV  236 (381)
T ss_pred             cccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhh
Confidence                                                             0001112334443      688999999999


Q ss_pred             HHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH--hcccCCCCCCCHHHHHH
Q 007711          485 LLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKS--CVRADPEKRPTMRDIAA  559 (592)
Q Consensus       485 vl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Cl~~dP~~RPs~~ev~~  559 (592)
                      ++|||+||+.||....  ..+.............   -+...    ....++.+++.+  |+..+|..||+++|++.
T Consensus       237 il~elltG~~Pf~~~~--~~~~~~~i~~~~~~~~---~~~~~----~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~  304 (381)
T cd05626         237 ILFEMLVGQPPFLAPT--PTETQLKVINWENTLH---IPPQV----KLSPEAVDLITKLCCSAEERLGRNGADDIKA  304 (381)
T ss_pred             HHHHHHhCCCCCcCCC--HHHHHHHHHccccccC---CCCCC----CCCHHHHHHHHHHccCcccccCCCCHHHHhc
Confidence            9999999999995433  2222222221111110   01111    122456778776  66777778999999976

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=1.5e-34  Score=286.41  Aligned_cols=233  Identities=21%  Similarity=0.338  Sum_probs=176.3

Q ss_pred             cccCcCCCeEEEEEEeCCCc-----------EEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC
Q 007711          304 NVIGSSPIGTVYKGTLSNGV-----------EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  372 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~-----------~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  372 (592)
                      +.||+|+||.||+|.+.+..           .+++|.+....      .....|.+|+.++++++|+||++++|+|.. .
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~   73 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDH------RDSLAFFETASLMSQLSHKHLVKLYGVCVR-D   73 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccch------hhHHHHHHHHHHHHcCCCcchhheeeEEec-C
Confidence            36999999999999975433           35555443221      115789999999999999999999999987 4


Q ss_pred             CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC-------ceE
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-------AAK  445 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~-------~~k  445 (592)
                        ..++|+||+++|+|.+++.... ..+++..+..++.|++.||+|||+++  |+||||||+||+++.++       .+|
T Consensus        74 --~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dlkp~Nill~~~~~~~~~~~~~k  148 (259)
T cd05037          74 --ENIMVEEYVKFGPLDVFLHREK-NNVSLHWKLDVAKQLASALHYLEDKK--LVHGNVCGKNILVARYGLNEGYVPFIK  148 (259)
T ss_pred             --CcEEEEEcCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhhCC--eecccCccceEEEecCccccCCceeEE
Confidence              4689999999999999987432 36899999999999999999999998  99999999999999888       799


Q ss_pred             EecCCcchhhhhh-----hhhhcccccCCCC--CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCC
Q 007711          446 LSDLSFWNEIAMA-----EMAATSKKLSSAP--SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL  517 (592)
Q Consensus       446 i~DfGla~~~~~~-----~~~~~~~~~~~~~--~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~  517 (592)
                      |+|||+++.....     ...+.+++.....  .++.++|||||||++|||++ |..||....  ..++...+... ...
T Consensus       149 l~Dfg~a~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~--~~~~~~~~~~~-~~~  225 (259)
T cd05037         149 LSDPGIPITVLSREERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLS--SSEKERFYQDQ-HRL  225 (259)
T ss_pred             eCCCCcccccccccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCC--chhHHHHHhcC-CCC
Confidence            9999998875431     1223344443333  56788999999999999999 577774322  22222221111 000


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                                 +......+.+++.+||+.+|.+||++.++++.|+
T Consensus       226 -----------~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         226 -----------PMPDCAELANLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             -----------CCCCchHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence                       0001157889999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.7e-34  Score=287.10  Aligned_cols=234  Identities=21%  Similarity=0.389  Sum_probs=173.8

Q ss_pred             cccCcCCCeEEEEEEeCC-------------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEec
Q 007711          304 NVIGSSPIGTVYKGTLSN-------------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE  370 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~-------------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~  370 (592)
                      +.||+|+||.||+|.+..             ...+++|.+....     ......|.+|+.+++.++||||+++++++..
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~-----~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~   75 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSH-----RDISLAFFETASMMRQVSHKHIVLLYGVCVR   75 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhh-----hhHHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence            368999999999998632             2246666654322     2335678899999999999999999999987


Q ss_pred             CCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc-------
Q 007711          371 EEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA-------  443 (592)
Q Consensus       371 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~-------  443 (592)
                      ..  ..++||||+++|+|..+++. ....+++..+.+++.|++.|++|||+.+  |+||||||+|||++.++.       
T Consensus        76 ~~--~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dlkp~Nill~~~~~~~~~~~~  150 (262)
T cd05077          76 DV--ENIMVEEFVEFGPLDLFMHR-KSDVLTTPWKFKVAKQLASALSYLEDKD--LVHGNVCTKNILLAREGIDGECGPF  150 (262)
T ss_pred             CC--CCEEEEecccCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHhhhCC--eECCCCCcccEEEecCCccCCCCce
Confidence            76  56899999999999888753 2346899999999999999999999998  999999999999987664       


Q ss_pred             eEEecCCcchhhhhhh-----hhhcccccCC-CCCCCCCCcchhhHHHHHHHH-hCCCcccCCCCChHHHHHHHhcCCCC
Q 007711          444 AKLSDLSFWNEIAMAE-----MAATSKKLSS-APSASLESNVYNFGVLLFEMV-TGRLPYLVDNGSLEDWAADYLSGVQP  516 (592)
Q Consensus       444 ~ki~DfGla~~~~~~~-----~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~-tG~~P~~~~~~~~~~~~~~~~~~~~~  516 (592)
                      +|++|||++.......     ..+.+|+... ...++.++|||||||++|||+ +|+.||....  ..+.. ....... 
T Consensus       151 ~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~--~~~~~-~~~~~~~-  226 (262)
T cd05077         151 IKLSDPGIPITVLSRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKT--LAEKE-RFYEGQC-  226 (262)
T ss_pred             eEeCCCCCCccccCcccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcc--hhHHH-HHHhcCc-
Confidence            8999999987553221     1233344332 234677899999999999998 4888884322  11111 1111100 


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 007711          517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL  561 (592)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L  561 (592)
                        ...        ......+.+++.+||+.||.+||++.+|++.+
T Consensus       227 --~~~--------~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         227 --MLV--------TPSCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             --cCC--------CCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence              001        11134688999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=7.6e-35  Score=293.49  Aligned_cols=248  Identities=14%  Similarity=0.185  Sum_probs=181.1

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+++.. ++..+|+|++......   ....+.+.+|++++++++|+||+++++++...+  ..++||
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   79 (287)
T cd07848           5 VLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEEN---EEVKETTLRELKMLRTLKQENIVELKEAFRRRG--KLYLVF   79 (287)
T ss_pred             EEEEecccCCEEEEEEEECCCCcEEEEEEEeccccc---ccchhhHHHHHHHHHhCCCccccchhhhEecCC--EEEEEE
Confidence            4578999999999999975 5788999988643322   223467889999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||++++.+..+..  ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++...... 
T Consensus        80 e~~~~~~l~~~~~--~~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~  155 (287)
T cd07848          80 EYVEKNMLELLEE--MPNGVPPEKVRSYIYQLIKAIHWCHKND--IVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSN  155 (287)
T ss_pred             ecCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEcCCCcEEEeeccCccccccccc
Confidence            9999887765443  2346889999999999999999999998  9999999999999999999999999988653221 


Q ss_pred             ---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHH--HHHh-----------cCCCCC
Q 007711          460 ---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA--ADYL-----------SGVQPL  517 (592)
Q Consensus       460 ---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~--~~~~-----------~~~~~~  517 (592)
                               ..+.+|+......++.++|||||||++|||++|+.||..... .....  ....           ......
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (287)
T cd07848         156 ANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESE-IDQLFTIQKVLGPLPAEQMKLFYSNPRF  234 (287)
T ss_pred             ccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHhhCCCCHHHHHhhhccchh
Confidence                     112233333333468899999999999999999999954321 11110  0000           000000


Q ss_pred             ccccCCCCC-------CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          518 QQFVDPTLS-------SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       518 ~~~~~~~~~-------~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .....+...       ......+..+.+++.+||+.||++|||++|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         235 HGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             cccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            000001000       011123457899999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.2e-34  Score=291.02  Aligned_cols=237  Identities=19%  Similarity=0.232  Sum_probs=179.3

Q ss_pred             cCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeCC
Q 007711          306 IGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  384 (592)
Q Consensus       306 lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~~  384 (592)
                      ||+|+||+||++... ++..+|+|.+.......  ....+.+..|++++++++|+||+++.+++....  ..++||||++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~--~~~lv~e~~~   76 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKK--RKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKT--DLCLVMTIMN   76 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhh--hHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCC--eEEEEEeCCC
Confidence            799999999999864 68899999886433221  122356788999999999999999999888766  6799999999


Q ss_pred             CCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh---
Q 007711          385 NGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---  459 (592)
Q Consensus       385 ~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~---  459 (592)
                      +|+|.+++..  .....+++..+..++.|++.||+|||+.+  |+||||||+||++++++.+||+|||+++......   
T Consensus        77 ~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~  154 (280)
T cd05608          77 GGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRR--IIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKT  154 (280)
T ss_pred             CCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEEeeCccceecCCCCccc
Confidence            9999887743  23456899999999999999999999998  9999999999999999999999999987653221   


Q ss_pred             ------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCCh--HHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL--EDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 ------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                            ..+.+++......++.++|||||||++|||+||+.||.......  ..........          . ...+..
T Consensus       155 ~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~----------~-~~~~~~  223 (280)
T cd05608         155 KGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILND----------S-VTYPDK  223 (280)
T ss_pred             cccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhccc----------C-CCCccc
Confidence                  12233333334446889999999999999999999996433211  1111111111          0 112233


Q ss_pred             HHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      .+..+.+++.+||+.||++||     +++++++
T Consensus       224 ~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~  256 (280)
T cd05608         224 FSPASKSFCEALLAKDPEKRLGFRDGNCDGLRT  256 (280)
T ss_pred             CCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhc
Confidence            445788999999999999999     5566654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=1.5e-34  Score=296.63  Aligned_cols=236  Identities=18%  Similarity=0.246  Sum_probs=178.6

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHH---hcCCCCceeeeeEEEecCCCcceE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTL---SKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l---~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.||+|+||.||+|... +++.||||.+.......  ....+.+.+|++++   +.++||||+++++++...+  ..+
T Consensus         3 i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~--~~~   78 (324)
T cd05589           3 CLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIA--RDEVESLMCEKRIFETANSERHPFLVNLFACFQTED--HVC   78 (324)
T ss_pred             EEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCC--EEE
Confidence            4578999999999999864 68899999986443111  12234566666554   5678999999999998877  679


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +||||+++|+|..+++.   ..+++.....++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....
T Consensus        79 lv~E~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~~~--ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~  153 (324)
T cd05589          79 FVMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLHENK--IVYRDLKLDNLLLDTEGFVKIADFGLCKEGMG  153 (324)
T ss_pred             EEEcCCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCC--eEecCCCHHHeEECCCCcEEeCcccCCccCCC
Confidence            99999999999888753   46899999999999999999999998  99999999999999999999999999875321


Q ss_pred             h---------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          458 A---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       458 ~---------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      .         ...+.+++......++.++|||||||++|||+||+.||..  .+..+...........           +
T Consensus       154 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~--~~~~~~~~~i~~~~~~-----------~  220 (324)
T cd05589         154 FGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPG--DDEEEVFDSIVNDEVR-----------Y  220 (324)
T ss_pred             CCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCC-----------C
Confidence            1         1122334444444578899999999999999999999943  3333333333332111           1


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      +...+..+.+++.+||+.||.+||     ++.++++
T Consensus       221 p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~  256 (324)
T cd05589         221 PRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKK  256 (324)
T ss_pred             CCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhh
Confidence            122335688999999999999999     4555544

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=1.4e-34  Score=292.77  Aligned_cols=251  Identities=22%  Similarity=0.327  Sum_probs=184.5

Q ss_pred             hhhhcccCcCCCeEEEEEEeCC-----------------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCcee
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSN-----------------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV  362 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~-----------------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv  362 (592)
                      ..+.+.||+|+||.||++...+                 +..+++|.+.....    ....++|.+|++++++++|+||+
T Consensus         7 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~   82 (296)
T cd05051           7 LNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDAS----DNAREDFLKEVKILSRLSDPNIA   82 (296)
T ss_pred             CcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccC----HHHHHHHHHHHHHHHhcCCCCEe
Confidence            3456789999999999998643                 23477777653321    23467899999999999999999


Q ss_pred             eeeEEEecCCCcceEEEEeeCCCCCchhhccccC---------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCC
Q 007711          363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE---------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNS  433 (592)
Q Consensus       363 ~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~---------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~  433 (592)
                      +++++|....  ..++++||+++++|.+++....         ...+++.....++.+++.||+|||+.+  ++||||||
T Consensus        83 ~~~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~--i~H~dlkp  158 (296)
T cd05051          83 RLLGVCTVDP--PLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLN--FVHRDLAT  158 (296)
T ss_pred             EEEEEEecCC--CcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcC--ccccccch
Confidence            9999998876  5699999999999999986432         126899999999999999999999998  99999999


Q ss_pred             CCeEEcCCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh--CCCcccCCC
Q 007711          434 SAVHLTEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT--GRLPYLVDN  500 (592)
Q Consensus       434 ~NiLl~~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t--G~~P~~~~~  500 (592)
                      +||+++.++.+||+|||+++.......           .+.+++......++.++|||||||++|||++  |..||... 
T Consensus       159 ~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~-  237 (296)
T cd05051         159 RNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHL-  237 (296)
T ss_pred             hceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCc-
Confidence            999999999999999999875432211           1222333233346889999999999999998  67787422 


Q ss_pred             CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          501 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                       ...+.............   .......+...+.++.+++.+||+.||++||++.||++.|++
T Consensus       238 -~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~~  296 (296)
T cd05051         238 -TDQQVIENAGHFFRDDG---RQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQR  296 (296)
T ss_pred             -ChHHHHHHHHhcccccc---ccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhcC
Confidence             22221111111100000   000011122334679999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=1.2e-34  Score=297.88  Aligned_cols=233  Identities=20%  Similarity=0.240  Sum_probs=176.8

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||+++.. ++..+|+|.+.......  ......+..|+.++.++ +||||+++++++....  ..++|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~--~~~lv~E   76 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVND--DEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES--RLFFVIE   76 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcc--hhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCC--EEEEEEe
Confidence            36999999999999964 57889999887543222  22345677888888776 8999999999998776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh---
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~---  458 (592)
                      |+++|+|..++..  ...+++.....++.+++.|++|||+++  |+||||||+||+++.++.+||+|||+++.....   
T Consensus        77 ~~~~~~L~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~  152 (329)
T cd05618          77 YVNGGDLMFHMQR--QRKLPEEHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT  152 (329)
T ss_pred             CCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCc
Confidence            9999999888753  356899999999999999999999998  999999999999999999999999998753211   


Q ss_pred             ------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCC------CChHHHHHHHhcCCCCCccccCCCCC
Q 007711          459 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN------GSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       459 ------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                            ...+.+|+......++.++|||||||++|||+||+.||....      ....++.........          .
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~----------~  222 (329)
T cd05618         153 TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ----------I  222 (329)
T ss_pred             cccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCC----------C
Confidence                  112233443334446889999999999999999999995211      112222222221110          0


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTM  554 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~  554 (592)
                      .++......+.+++.+||+.||++||++
T Consensus       223 ~~p~~~~~~~~~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         223 RIPRSLSVKAASVLKSFLNKDPKERLGC  250 (329)
T ss_pred             CCCCCCCHHHHHHHHHHhcCCHHHcCCC
Confidence            1222334568899999999999999983

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-34  Score=285.70  Aligned_cols=242  Identities=24%  Similarity=0.307  Sum_probs=183.0

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCC---------chhHHHHHHHHHHHHhcCCCCceeeeeEEEecC
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDW---------PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE  371 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~---------~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~  371 (592)
                      +...||+|.||.|-+|.. .+++.||+|++.+......         .....+..++||.+|++++|+|||+|+.+..+.
T Consensus       101 l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiEvLDDP  180 (576)
T KOG0585|consen  101 LIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLIEVLDDP  180 (576)
T ss_pred             hhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEEEeecCc
Confidence            456799999999999984 5789999999876443211         011235789999999999999999999999887


Q ss_pred             CCcceEEEEeeCCCCCchhhccccCCCC-CCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCC
Q 007711          372 EPFTRMMVFEYAPNGTLFEHIHIKESEH-LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS  450 (592)
Q Consensus       372 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~-l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfG  450 (592)
                      .....|||+|||..|.+...   ..... ++..+..++..++..||+|||.++  |+||||||+|+||++++++||+|||
T Consensus       181 ~s~~~YlVley~s~G~v~w~---p~d~~els~~~Ar~ylrDvv~GLEYLH~Qg--iiHRDIKPsNLLl~~~g~VKIsDFG  255 (576)
T KOG0585|consen  181 ESDKLYLVLEYCSKGEVKWC---PPDKPELSEQQARKYLRDVVLGLEYLHYQG--IIHRDIKPSNLLLSSDGTVKISDFG  255 (576)
T ss_pred             ccCceEEEEEeccCCccccC---CCCcccccHHHHHHHHHHHHHHHHHHHhcC--eeccccchhheEEcCCCcEEeeccc
Confidence            76688999999999987432   22333 889999999999999999999999  9999999999999999999999999


Q ss_pred             cchhhhhhh-------hh-hcccccCCCCC----------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhc
Q 007711          451 FWNEIAMAE-------MA-ATSKKLSSAPS----------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS  512 (592)
Q Consensus       451 la~~~~~~~-------~~-~~~~~~~~~~~----------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~  512 (592)
                      .+.....+.       .. ...+..+++||          .+.+.||||+||+||-|+.|+.||..  ....+...++..
T Consensus       256 Vs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~--~~~~~l~~KIvn  333 (576)
T KOG0585|consen  256 VSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFD--DFELELFDKIVN  333 (576)
T ss_pred             eeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCccc--chHHHHHHHHhc
Confidence            988652110       11 11223344444          35678999999999999999999942  222233333322


Q ss_pred             CCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          513 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .         +..-...++..+.+.+|+.+++.+||+.|.+..+|..
T Consensus       334 ~---------pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~  371 (576)
T KOG0585|consen  334 D---------PLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKL  371 (576)
T ss_pred             C---------cccCCCcccccHHHHHHHHHHhhcChhheeehhhhee
Confidence            2         1111112244578999999999999999999998864

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.3e-35  Score=302.41  Aligned_cols=242  Identities=21%  Similarity=0.328  Sum_probs=192.3

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      |...||+|+|-+||||.. .+|.+||.-.++...... .....+.|..|+.+|+.|+|+|||+++.++.+.......+|+
T Consensus        44 ~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q-~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT  122 (632)
T KOG0584|consen   44 FDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQ-SPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT  122 (632)
T ss_pred             hhhhcccccceeeeeccccccchhhHHHHHhHHHhhc-ChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence            456799999999999985 458888854443332222 133457899999999999999999999998876643567999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC-CceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~-~~~ki~DfGla~~~~~~~  459 (592)
                      |.|..|+|..|++  +.+.++.....+||+||.+||.|||++.|||+|||||..||+|+.+ |.+||+|+|+|+......
T Consensus       123 EL~TSGtLr~Y~k--k~~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~  200 (632)
T KOG0584|consen  123 ELFTSGTLREYRK--KHRRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSH  200 (632)
T ss_pred             ecccCCcHHHHHH--HhccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhccc
Confidence            9999999999986  4566788899999999999999999999999999999999999865 799999999999876554


Q ss_pred             hhh-cccccCCCCC-----CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC--CccccCCCCCCCCHH
Q 007711          460 MAA-TSKKLSSAPS-----ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP--LQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 ~~~-~~~~~~~~~~-----~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  531 (592)
                      ... ..+.-+|+|+     |.+..||||||++++||+|+..||.. -....+..++..++..+  +..+-|         
T Consensus       201 aksvIGTPEFMAPEmYEE~YnE~VDVYaFGMCmLEMvT~eYPYsE-C~n~AQIYKKV~SGiKP~sl~kV~d---------  270 (632)
T KOG0584|consen  201 AKSVIGTPEFMAPEMYEENYNELVDVYAFGMCMLEMVTSEYPYSE-CTNPAQIYKKVTSGIKPAALSKVKD---------  270 (632)
T ss_pred             cceeccCccccChHHHhhhcchhhhhhhhhHHHHHHHhccCChhh-hCCHHHHHHHHHcCCCHHHhhccCC---------
Confidence            332 2233456665     78999999999999999999999953 34455666666666332  222222         


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        .+++++|.+|+.. ..+|||+.|++.
T Consensus       271 --Pevr~fIekCl~~-~~~R~sa~eLL~  295 (632)
T KOG0584|consen  271 --PEVREFIEKCLAT-KSERLSAKELLK  295 (632)
T ss_pred             --HHHHHHHHHHhcC-chhccCHHHHhh
Confidence              3689999999999 999999999875

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=1.3e-34  Score=296.34  Aligned_cols=235  Identities=20%  Similarity=0.243  Sum_probs=180.8

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||++... ++..+|+|.+.......  ......+..|++++..+ +||||+++++++...+  ..++|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~--~~~lv~e   76 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQ--DDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKD--RLFFVME   76 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhh--hhHHHHHHHHHHHHHhccCCCCccceeeEEEcCC--EEEEEEc
Confidence            36999999999999965 57889999886543211  12345577888888887 7999999999998776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh---
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~---  458 (592)
                      |+++|+|..++..  ...+++.....++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++.....   
T Consensus        77 ~~~~~~L~~~~~~--~~~l~~~~~~~~~~qi~~~l~~LH~~~--ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~  152 (318)
T cd05570          77 YVNGGDLMFHIQR--SGRFDEPRARFYAAEIVLGLQFLHERG--IIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVT  152 (318)
T ss_pred             CCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eEccCCCHHHeEECCCCcEEecccCCCeecCcCCCc
Confidence            9999999888763  346899999999999999999999998  999999999999999999999999998653111   


Q ss_pred             ------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          459 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       459 ------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            ...+.+++......++.++|||||||++|||+||+.||..  .+..+...........           ++...
T Consensus       153 ~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~--~~~~~~~~~i~~~~~~-----------~~~~~  219 (318)
T cd05570         153 TSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEG--DDEDELFQSILEDEVR-----------YPRWL  219 (318)
T ss_pred             ccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCC--CCHHHHHHHHHcCCCC-----------CCCcC
Confidence                  1122333433344478899999999999999999999943  2333333333222111           12223


Q ss_pred             HHHHHHHHHHhcccCCCCCCCH-----HHHHH
Q 007711          533 LETLGELIKSCVRADPEKRPTM-----RDIAA  559 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~-----~ev~~  559 (592)
                      +..+.+++.+||+.||++||++     .++++
T Consensus       220 ~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         220 SKEAKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             CHHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence            4578999999999999999999     77754

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.8e-35  Score=269.46  Aligned_cols=240  Identities=16%  Similarity=0.282  Sum_probs=191.1

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||+|.||.||.|+. +++-.||+|++.+....  ......++++|+++-+.++||||++++|++.+..  ..||+
T Consensus        25 eigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~--~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~--riyLi  100 (281)
T KOG0580|consen   25 EIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQIL--KTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSK--RIYLI  100 (281)
T ss_pred             cccccccCCccccEeEeeeccCCcEEEEeeeeHHHHH--HhcchhhhhheeEeecccCCccHHhhhhheeccc--eeEEE
Confidence            4568999999999999996 45778999988654422  2345778999999999999999999999999988  77999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||.+.|+++..|+......++......+..|+|.|+.|+|.++  ++|||+||+|+|++.++..||+|||-+.......
T Consensus       101 lEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~--VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~k  178 (281)
T KOG0580|consen  101 LEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKR--VIHRDIKPENLLLGSAGELKIADFGWSVHAPSNK  178 (281)
T ss_pred             EEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCC--cccCCCCHHHhccCCCCCeeccCCCceeecCCCC
Confidence            99999999999998777777888888889999999999999999  9999999999999999999999999876543211


Q ss_pred             -------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          460 -------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       460 -------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                             ..+.+++.......+.+.|+|++||..||++.|.+||....  -.+..+.+..-     ++.      ++...
T Consensus       179 R~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~--~~etYkrI~k~-----~~~------~p~~i  245 (281)
T KOG0580|consen  179 RKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQS--HSETYKRIRKV-----DLK------FPSTI  245 (281)
T ss_pred             ceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhh--hHHHHHHHHHc-----ccc------CCccc
Confidence                   12223344444456888999999999999999999995333  22222222211     111      12333


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...+.+++.+|+..+|.+|.+..|++.
T Consensus       246 s~~a~dlI~~ll~~~p~~r~~l~~v~~  272 (281)
T KOG0580|consen  246 SGGAADLISRLLVKNPIERLALTEVMD  272 (281)
T ss_pred             ChhHHHHHHHHhccCccccccHHHHhh
Confidence            457889999999999999999999875

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=1.6e-34  Score=288.11  Aligned_cols=240  Identities=25%  Similarity=0.415  Sum_probs=183.1

Q ss_pred             cccCcCCCeEEEEEEeCC-------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          304 NVIGSSPIGTVYKGTLSN-------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~-------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.||+|+||.||+|+..+       +..+++|.+.....    .....+|.+|++++++++||||++++++|...+  ..
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   74 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGAT----DQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNE--PQ   74 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccc----hhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCC--Ce
Confidence            369999999999998643       24678887643221    223567899999999999999999999998776  57


Q ss_pred             EEEEeeCCCCCchhhcccc-----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC-----ceEE
Q 007711          377 MMVFEYAPNGTLFEHIHIK-----ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-----AAKL  446 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~-----~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~-----~~ki  446 (592)
                      ++|+||+++|+|.++++..     ....++|..++.++.+++.|++|||+.+  ++|+||||+||+++.+.     .+|+
T Consensus        75 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~H~dl~p~nil~~~~~~~~~~~~~l  152 (269)
T cd05044          75 YIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMH--FIHRDLAARNCLVSEKGYDADRVVKI  152 (269)
T ss_pred             EEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCC--cccCCCChheEEEecCCCCCCcceEE
Confidence            9999999999999998642     2234789999999999999999999988  99999999999999877     8999


Q ss_pred             ecCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCC
Q 007711          447 SDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV  514 (592)
Q Consensus       447 ~DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~  514 (592)
                      +|||+++......           ..+.+++......++.++|||||||++|||+| |+.||...  ...+.......+ 
T Consensus       153 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~--~~~~~~~~~~~~-  229 (269)
T cd05044         153 GDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPAL--NNQEVLQHVTAG-  229 (269)
T ss_pred             CCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCccc--CHHHHHHHHhcC-
Confidence            9999987553221           11223333334446889999999999999998 99998432  222222221111 


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          515 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      ...         ..+...+..+.+++.+||+.+|++||++.++++.|++
T Consensus       230 ~~~---------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         230 GRL---------QKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             Ccc---------CCcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            100         1122345678999999999999999999999998863

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=2.7e-34  Score=295.10  Aligned_cols=247  Identities=16%  Similarity=0.260  Sum_probs=180.8

Q ss_pred             hhcccCcC--CCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          302 FSNVIGSS--PIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       302 ~~~~lG~G--~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.++||+|  +|++||++.. .+|..||+|.+......   ....+.+.+|+++++.++||||+++++++...+  ..++
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~--~~~l   76 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACT---NEMVTFLQGELHVSKLFNHPNIVPYRATFIADN--ELWV   76 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhcc---HHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECC--EEEE
Confidence            45679999  6789999986 56899999988644322   233456778999999999999999999998877  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |+||+++|+|.+++.......+++..+..++.|++.||+|||+.+  |+||||||+|||++.++.++++||+........
T Consensus        77 v~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~--iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~  154 (327)
T cd08227          77 VTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMG--YVHRSVKASHILISVDGKVYLSGLRSNLSMINH  154 (327)
T ss_pred             EEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCChhhEEEecCCcEEEcccchhhccccc
Confidence            999999999999986544456899999999999999999999998  999999999999999999999999865433111


Q ss_pred             h----------------hhhcccccCCC--CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          459 E----------------MAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       459 ~----------------~~~~~~~~~~~--~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      .                ..+.+++....  ..++.++|||||||++|||+||+.||....  ..........+.  ....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~~~~~~~--~~~~  230 (327)
T cd08227         155 GQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMP--ATQMLLEKLNGT--VPCL  230 (327)
T ss_pred             cccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcc--hhHHHHHHhcCC--cccc
Confidence            0                01122332221  236788999999999999999999995321  111111111110  0000


Q ss_pred             cC--------------------------------C-----CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 VD--------------------------------P-----TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ~~--------------------------------~-----~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+                                +     ............+.+++.+||+.||++|||++|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~  306 (327)
T cd08227         231 LDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLN  306 (327)
T ss_pred             ccccchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhc
Confidence            00                                0     000111223457889999999999999999999986

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=2e-34  Score=296.28  Aligned_cols=237  Identities=20%  Similarity=0.254  Sum_probs=179.9

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||++... ++..||+|++.......  ......+..|..++.++ +||||+++++++....  ..++|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~--~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~--~~~lv~e   76 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVND--DEDIDWVQTEKHVFETASNHPFLVGLHSCFQTES--RLFFVIE   76 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCC--EEEEEEe
Confidence            36899999999999964 68899999987543221  22345688899999988 7999999999998776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh----
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  457 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~----  457 (592)
                      |+++|+|.+++..  ...+++..+..++.+++.||+|||+++  ++||||||+|||++.++.+||+|||+++....    
T Consensus        77 ~~~~g~L~~~~~~--~~~l~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~  152 (329)
T cd05588          77 FVSGGDLMFHMQR--QRKLPEEHARFYSAEISLALNFLHERG--IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDT  152 (329)
T ss_pred             CCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHeEECCCCCEEECcCccccccccCCCc
Confidence            9999999888753  356899999999999999999999998  99999999999999999999999999874211    


Q ss_pred             -----hhhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCC------CChHHHHHHHhcCCCCCccccCCCCC
Q 007711          458 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN------GSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       458 -----~~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                           +...+.+|+......++.++|||||||++|||+||+.||....      ....++.........          .
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~----------~  222 (329)
T cd05588         153 TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQ----------I  222 (329)
T ss_pred             cccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCC----------C
Confidence                 1112233343334447889999999999999999999995311      112223222221110          0


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCC------HHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPT------MRDIA  558 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs------~~ev~  558 (592)
                      ..+...+..+.+++.+||+.||.+||+      +++++
T Consensus       223 ~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~  260 (329)
T cd05588         223 RIPRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIK  260 (329)
T ss_pred             CCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHh
Confidence            112223456889999999999999997      56665

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=3.1e-35  Score=296.08  Aligned_cols=234  Identities=19%  Similarity=0.294  Sum_probs=190.4

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|.||.||||+-+ +.+.||+|.+.+....   ....+..++|++++++++|||||.++.++....  +.++|+|
T Consensus         7 ~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~---~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~--~~~vVte   81 (808)
T KOG0597|consen    7 YEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRN---EKELKNLRQEVRILRSLKHPNIVEMLESFETSA--HLWVVTE   81 (808)
T ss_pred             HHHhcCCccceeeecccccceeEEEEEEehhcCCc---hHHHHHHHHHHHHHHhcCCcchhhHHHhhcccc--eEEEEeh
Confidence            467999999999999954 5788899988654332   334567899999999999999999999998887  7899999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh--
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~--  459 (592)
                      |+.+ +|+.++..  ...++......|+.++..||.|||+.+  |.|||+||.|||++..+.+|++|||+||.+....  
T Consensus        82 ~a~g-~L~~il~~--d~~lpEe~v~~~a~~LVsaL~yLhs~r--ilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~v  156 (808)
T KOG0597|consen   82 YAVG-DLFTILEQ--DGKLPEEQVRAIAYDLVSALYYLHSNR--ILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSV  156 (808)
T ss_pred             hhhh-hHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHhcC--cccccCCcceeeecCCCceeechhhhhhhcccCcee
Confidence            9976 99999863  456899999999999999999999999  9999999999999999999999999999876433  


Q ss_pred             -------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          460 -------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       460 -------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                             ..+++++......|+..+|.||+||++||+++|++||.  ..++.+.++.+..+.-.           .+.+.
T Consensus       157 ltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~--a~si~~Lv~~I~~d~v~-----------~p~~~  223 (808)
T KOG0597|consen  157 LTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFY--ARSITQLVKSILKDPVK-----------PPSTA  223 (808)
T ss_pred             eeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHhcCCCC-----------Ccccc
Confidence                   22333444444457889999999999999999999993  34455555555544211           12344


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...+..++..-+++||..|.+-.+++.
T Consensus       224 S~~f~nfl~gLL~kdP~~RltW~~Ll~  250 (808)
T KOG0597|consen  224 SSSFVNFLQGLLIKDPAQRLTWTDLLG  250 (808)
T ss_pred             cHHHHHHHHHHhhcChhhcccHHHHhc
Confidence            567889999999999999999998864

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=2.5e-34  Score=284.47  Aligned_cols=239  Identities=19%  Similarity=0.296  Sum_probs=186.2

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... ++..+++|.+.....    ....+.+.+|+.++++++|+||+++++++....  ..++++
T Consensus         4 ~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   77 (255)
T cd08219           4 VLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKS----SSAVEDSRKEAVLLAKMKHPNIVAFKESFEADG--HLYIVM   77 (255)
T ss_pred             EEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcc----hHHHHHHHHHHHHHHhCCCCCcceEEEEEEECC--EEEEEE
Confidence            4578999999999999964 688899998754322    223567889999999999999999999998777  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++|+|.+++.......++......++.+++.|+.|||+.+  ++|+||||+||++++++.++++|||+++.......
T Consensus        78 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~  155 (255)
T cd08219          78 EYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKR--VLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGA  155 (255)
T ss_pred             eeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCC--cccCCCCcceEEECCCCcEEEcccCcceeeccccc
Confidence            9999999999886555566889999999999999999999998  99999999999999999999999999876532211


Q ss_pred             ---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          461 ---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       461 ---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                               .+.+++.......+.++||||||+++|||++|+.||..  .+..........+..  .        ..+..
T Consensus       156 ~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~--~~~~~~~~~~~~~~~--~--------~~~~~  223 (255)
T cd08219         156 YACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQA--NSWKNLILKVCQGSY--K--------PLPSH  223 (255)
T ss_pred             ccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCC--CCHHHHHHHHhcCCC--C--------CCCcc
Confidence                     12223333333467899999999999999999999953  233333333222211  1        11222


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      ....+.+++.+||+.||++||++.+++..
T Consensus       224 ~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         224 YSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             cCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence            34568899999999999999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=3.4e-34  Score=288.57  Aligned_cols=242  Identities=19%  Similarity=0.232  Sum_probs=181.8

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|+||+||+|.. .+++.+|+|.+.......  ......+.+|++++++++|+||+++.+++...+  ..++|||
T Consensus         5 ~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~--~~~lv~e   80 (285)
T cd05632           5 YRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKK--RKGESMALNEKQILEKVNSQFVVNLAYAYETKD--ALCLVLT   80 (285)
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhh--hhHHHHHHHHHHHHHHcCCcCceeEEEEEecCC--EEEEEEE
Confidence            46799999999999996 468899999886543221  223456788999999999999999999988776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh--
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~--  459 (592)
                      |+++|+|.+++.......+++.....++.|++.||.|||+.+  |+||||||+||++++++.+||+|||+++......  
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~--iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  158 (285)
T cd05632          81 IMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHREN--TVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESI  158 (285)
T ss_pred             eccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecCCCHHHEEECCCCCEEEecCCcceecCCCCcc
Confidence            999999998886544457999999999999999999999998  9999999999999999999999999986543211  


Q ss_pred             ------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          460 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       460 ------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                            ..+.+++......++.++|||||||++|||+||+.||.....  ................       .++....
T Consensus       159 ~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~--~~~~~~~~~~~~~~~~-------~~~~~~~  229 (285)
T cd05632         159 RGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKE--KVKREEVDRRVLETEE-------VYSAKFS  229 (285)
T ss_pred             cCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHhhhcccc-------ccCccCC
Confidence                  122233333333468899999999999999999999953221  1111111111011111       1122233


Q ss_pred             HHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRPT-----MRDIAA  559 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs-----~~ev~~  559 (592)
                      ..+.+++..||+.||++||+     +.+++.
T Consensus       230 ~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05632         230 EEAKSICKMLLTKDPKQRLGCQEEGAGEVKR  260 (285)
T ss_pred             HHHHHHHHHHccCCHhHcCCCcccChHHHHc
Confidence            46889999999999999999     556654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=2.2e-34  Score=294.16  Aligned_cols=234  Identities=19%  Similarity=0.253  Sum_probs=177.2

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc-CCCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK-VNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~-l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||+|... ++..||+|.+.......  ......+..|..++.. ++||||+++++++...+  ..++|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~--~~~lv~e   76 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLM--DDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKE--NLFFVME   76 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--cchHHHHHHHHHHHHhccCCCcCcceEEEEEeCC--EEEEEEe
Confidence            36999999999999965 57889999886543211  1123456677778776 48999999999998877  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh---
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~---  458 (592)
                      |+++|+|.+++..  ...+++.....++.|++.||+|||+.+  ++||||||+|||++.++.+||+|||+++.....   
T Consensus        77 y~~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~LH~~~--ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  152 (316)
T cd05619          77 YLNGGDLMFHIQS--CHKFDLPRATFYAAEIICGLQFLHSKG--IVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAK  152 (316)
T ss_pred             CCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCc
Confidence            9999999998863  346889999999999999999999998  999999999999999999999999998753211   


Q ss_pred             ------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          459 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       459 ------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            ...+.+|+......++.++|||||||++|||+||+.||...  +..+.........        +.   ++...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~--~~~~~~~~i~~~~--------~~---~~~~~  219 (316)
T cd05619         153 TCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGH--DEEELFQSIRMDN--------PC---YPRWL  219 (316)
T ss_pred             eeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhCC--------CC---CCccC
Confidence                  11223333333334788999999999999999999999532  3333333222111        11   11123


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHH-HHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMR-DIA  558 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~-ev~  558 (592)
                      ...+.+++.+||+.||++||++. ++.
T Consensus       220 ~~~~~~li~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05619         220 TREAKDILVKLFVREPERRLGVKGDIR  246 (316)
T ss_pred             CHHHHHHHHHHhccCHhhcCCChHHHH
Confidence            35688999999999999999997 553

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=1.9e-34  Score=293.08  Aligned_cols=248  Identities=17%  Similarity=0.236  Sum_probs=178.5

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||+|+||.||+|+.. ++..+|+|++.......    ....+.+|++++++++||||+++++++....  ..++|
T Consensus         8 ~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~lv   81 (303)
T cd07869           8 EKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEG----TPFTAIREASLLKGLKHANIVLLHDIIHTKE--TLTLV   81 (303)
T ss_pred             eEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccc----cchhHHHHHHHHhhCCCCCcCeEEEEEecCC--eEEEE
Confidence            34578999999999999965 68899999886443221    2345778999999999999999999998776  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||++ ++|.+++.. ....+++..+..++.|++.||+|||+.+  |+||||||+|||+++++.+||+|||+++......
T Consensus        82 ~e~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~  157 (303)
T cd07869          82 FEYVH-TDLCQYMDK-HPGGLHPENVKLFLFQLLRGLSYIHQRY--ILHRDLKPQNLLISDTGELKLADFGLARAKSVPS  157 (303)
T ss_pred             EECCC-cCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEECCCCCEEECCCCcceeccCCC
Confidence            99995 688777753 2345788899999999999999999998  9999999999999999999999999987543211


Q ss_pred             ---------hhhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-----------CCc
Q 007711          460 ---------MAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----------PLQ  518 (592)
Q Consensus       460 ---------~~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----------~~~  518 (592)
                               ..+.+|+.. ....++.++|||||||++|||+||+.||.... +..+..........           ...
T Consensus       158 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (303)
T cd07869         158 HTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMK-DIQDQLERIFLVLGTPNEDTWPGVHSLP  236 (303)
T ss_pred             ccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCc-cHHHHHHHHHHHhCCCChhhccchhhcc
Confidence                     112223322 12335778999999999999999999995432 22222111110000           000


Q ss_pred             cccCCCCCCC-CH---------HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 QFVDPTLSSF-DE---------EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 ~~~~~~~~~~-~~---------~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .......... +.         .....+.+++.+|++.||++|||+.|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         237 HFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             ccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence            0000000000 00         01245789999999999999999999874

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.1e-34  Score=299.35  Aligned_cols=251  Identities=17%  Similarity=0.202  Sum_probs=177.9

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC---cce
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~---~~~  376 (592)
                      .+.+.||+|+||.||+|+. .++..||+|.+......   ......+.+|++++++++||||+++++++.....   ...
T Consensus         3 ~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   79 (338)
T cd07859           3 KIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEH---VSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDI   79 (338)
T ss_pred             EEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhcc---chhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceE
Confidence            3457899999999999995 46899999987643221   1234568899999999999999999998864321   136


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|||||. ++|.+++..  ...+++.....++.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++...
T Consensus        80 ~lv~e~~~-~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~  154 (338)
T cd07859          80 YVVFELME-SDLHQVIKA--NDDLTPEHHQFFLYQLLRALKYIHTAN--VFHRDLKPKNILANADCKLKICDFGLARVAF  154 (338)
T ss_pred             EEEEecCC-CCHHHHHHh--cccCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEECCCCcEEEccCccccccc
Confidence            89999995 689888753  346899999999999999999999999  9999999999999999999999999987542


Q ss_pred             hhh------------hhhcccccCCC--CCCCCCCcchhhHHHHHHHHhCCCcccCCCCC-hHHHHHHHhcC--------
Q 007711          457 MAE------------MAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDWAADYLSG--------  513 (592)
Q Consensus       457 ~~~------------~~~~~~~~~~~--~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~-~~~~~~~~~~~--------  513 (592)
                      ...            ..+.+|+....  ..++.++|||||||++|||+||+.||...... ....+......        
T Consensus       155 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (338)
T cd07859         155 NDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISR  234 (338)
T ss_pred             cccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHH
Confidence            211            11222332211  23577899999999999999999999533210 00000000000        


Q ss_pred             ---CC------CCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          514 ---VQ------PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       514 ---~~------~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                         ..      .+..................+.+++.+||+.||++||+++|+++
T Consensus       235 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~  289 (338)
T cd07859         235 VRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALA  289 (338)
T ss_pred             hhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhc
Confidence               00      00000000000000112346789999999999999999999986

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-34  Score=270.44  Aligned_cols=228  Identities=21%  Similarity=0.296  Sum_probs=184.2

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      ...||.|+||.|...+.+ +|..+|.|++.....-.  ....+....|..+|+.+.||.++++.+-|.+..  ..++|||
T Consensus        49 ~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVk--lKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~--~lymvme  124 (355)
T KOG0616|consen   49 LKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVK--LKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNS--NLYMVME  124 (355)
T ss_pred             eeeeccCccceEEEEEEccCCceeehhhcCHHHHHH--HHHHHHHhhHHHHHhhccCceeEEEEEeeccCC--eEEEEEe
Confidence            467999999999999964 68899999886544322  334566788999999999999999999998877  7899999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA  461 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~~  461 (592)
                      |+++|.|+.+++  ..+.++.....-+|.+|+.|++|||+++  |++|||||+|||+|.+|.+||+|||+|+........
T Consensus       125 yv~GGElFS~Lr--k~~rF~e~~arFYAAeivlAleylH~~~--iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~T  200 (355)
T KOG0616|consen  125 YVPGGELFSYLR--KSGRFSEPHARFYAAEIVLALEYLHSLD--IIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWT  200 (355)
T ss_pred             ccCCccHHHHHH--hcCCCCchhHHHHHHHHHHHHHHHHhcC--eeeccCChHHeeeccCCcEEEEeccceEEecCcEEE
Confidence            999999999997  4567899999999999999999999999  999999999999999999999999999987644322


Q ss_pred             ------hcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHH
Q 007711          462 ------ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET  535 (592)
Q Consensus       462 ------~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  535 (592)
                            +.+||......+..++|.|+|||++|||+.|.+||.....  .+....++.+.-.+...           ....
T Consensus       201 lCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~--~~iY~KI~~~~v~fP~~-----------fs~~  267 (355)
T KOG0616|consen  201 LCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNP--IQIYEKILEGKVKFPSY-----------FSSD  267 (355)
T ss_pred             ecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCCh--HHHHHHHHhCcccCCcc-----------cCHH
Confidence                  2233333444478899999999999999999999954332  44445555554333332           2346


Q ss_pred             HHHHHHHhcccCCCCC
Q 007711          536 LGELIKSCVRADPEKR  551 (592)
Q Consensus       536 l~~l~~~Cl~~dP~~R  551 (592)
                      +.+|+..-++.|-.+|
T Consensus       268 ~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  268 AKDLLKKLLQVDLTKR  283 (355)
T ss_pred             HHHHHHHHHhhhhHhh
Confidence            8889999999988888

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=2.1e-34  Score=310.57  Aligned_cols=243  Identities=20%  Similarity=0.301  Sum_probs=187.7

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC-----
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP-----  373 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~-----  373 (592)
                      +.+.+.||+|+||.||+|+. .+|..||||.+......   ......+.+|+..+..++|+|+++++..+....+     
T Consensus        34 Y~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~---~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~  110 (496)
T PTZ00283         34 YWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMS---EADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPEN  110 (496)
T ss_pred             EEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCC---HHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCccc
Confidence            34568899999999999985 57899999988654322   2345678899999999999999999877654321     


Q ss_pred             -cceEEEEeeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCC
Q 007711          374 -FTRMMVFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS  450 (592)
Q Consensus       374 -~~~~lv~Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfG  450 (592)
                       ...++||||+++|+|.++++..  ....+++.....++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||
T Consensus       111 ~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~--IiHrDLKP~NILl~~~~~vkL~DFG  188 (496)
T PTZ00283        111 VLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKH--MIHRDIKSANILLCSNGLVKLGDFG  188 (496)
T ss_pred             ceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEeCCCCEEEEecc
Confidence             1257999999999999988643  3456888999999999999999999998  9999999999999999999999999


Q ss_pred             cchhhhhh-----------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCcc
Q 007711          451 FWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ  519 (592)
Q Consensus       451 la~~~~~~-----------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~  519 (592)
                      +++.....           ...+.+|+......++.++|||||||++|||+||+.||.  .....+.......+..    
T Consensus       189 ls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~--~~~~~~~~~~~~~~~~----  262 (496)
T PTZ00283        189 FSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFD--GENMEEVMHKTLAGRY----  262 (496)
T ss_pred             cCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHhcCCC----
Confidence            98765321           112233343333447889999999999999999999994  3344444444433211    


Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          520 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       520 ~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        +    ..+...+.++.+++.+||+.||++||++.+++.
T Consensus       263 --~----~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~  296 (496)
T PTZ00283        263 --D----PLPPSISPEMQEIVTALLSSDPKRRPSSSKLLN  296 (496)
T ss_pred             --C----CCCCCCCHHHHHHHHHHcccChhhCcCHHHHHh
Confidence              1    112233457899999999999999999999876

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.8e-34  Score=280.61  Aligned_cols=239  Identities=26%  Similarity=0.397  Sum_probs=186.7

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeC
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYA  383 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~  383 (592)
                      ++||+|+||.||++...+++.+++|.+.....    ......|.+|++++++++|+||+++++++....  ..++|+||+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~e~~   74 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLP----PDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQ--PIYIVMELV   74 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCC----HHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCC--CeEEEEEcC
Confidence            36999999999999987799999997754322    234568999999999999999999999998877  679999999


Q ss_pred             CCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh----
Q 007711          384 PNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE----  459 (592)
Q Consensus       384 ~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~----  459 (592)
                      ++++|.+++... ...+++.....++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++......    
T Consensus        75 ~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~lH~~~--i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~  151 (251)
T cd05041          75 PGGSLLTFLRKK-KNRLTVKKLLQMSLDAAAGMEYLESKN--CIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVS  151 (251)
T ss_pred             CCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCC--EehhhcCcceEEEcCCCcEEEeeccccccccCCcceec
Confidence            999999998643 346789999999999999999999998  9999999999999999999999999987543111    


Q ss_pred             -------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 -------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 -------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                             ..+.+++......++.++|||||||++|||+| |..||....  ..+........ ...         ..+..
T Consensus       152 ~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~--~~~~~~~~~~~-~~~---------~~~~~  219 (251)
T cd05041         152 DGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMS--NQQTRERIESG-YRM---------PAPQL  219 (251)
T ss_pred             cccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCC--HHHHHHHHhcC-CCC---------CCCcc
Confidence                   11233343333446889999999999999999 888884322  22222221111 000         11223


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      .+.++.+++.+||+.+|++||++.|+++.|++
T Consensus       220 ~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~~  251 (251)
T cd05041         220 CPEEIYRLMLQCWAYDPENRPSFSEIYNELQI  251 (251)
T ss_pred             CCHHHHHHHHHHhccChhhCcCHHHHHHHhhC
Confidence            44579999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=3.6e-34  Score=290.97  Aligned_cols=244  Identities=20%  Similarity=0.330  Sum_probs=183.3

Q ss_pred             hcccCcCCCeEEEEEEeC-CCc----EEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGV----EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~----~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      .+.||+|+||.||+|.+. +|.    .+++|.+....    ......+|.+|+.++++++|+||++++|+|....   .+
T Consensus        12 ~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~---~~   84 (303)
T cd05110          12 VKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETT----GPKANVEFMDEALIMASMDHPHLVRLLGVCLSPT---IQ   84 (303)
T ss_pred             ccccccCCCccEEEEEEecCCCcceeeEEEEeccccC----CHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCC---ce
Confidence            467999999999999863 444    35666554221    1233457899999999999999999999997543   47


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +++||+++|+|.+++... ...+++..+..++.+++.||+|||+++  ++||||||+||++++++.+||+|||+++....
T Consensus        85 ~v~e~~~~g~l~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~LH~~~--ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~  161 (303)
T cd05110          85 LVTQLMPHGCLLDYVHEH-KDNIGSQLLLNWCVQIAKGMMYLEERR--LVHRDLAARNVLVKSPNHVKITDFGLARLLEG  161 (303)
T ss_pred             eeehhcCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHhhcC--eeccccccceeeecCCCceEEccccccccccC
Confidence            999999999999998643 346889999999999999999999998  99999999999999999999999999986532


Q ss_pred             hhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          458 AEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       458 ~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ...           .+.+++......++.++|||||||++||++| |+.||....  ..+. ...........       
T Consensus       162 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~--~~~~-~~~~~~~~~~~-------  231 (303)
T cd05110         162 DEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIP--TREI-PDLLEKGERLP-------  231 (303)
T ss_pred             cccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHH-HHHHHCCCCCC-------
Confidence            211           1122222233346788999999999999998 999984322  2222 22222211110       


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                        .+..+...+.+++.+||..+|++||+++++++.|+++....
T Consensus       232 --~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~~  272 (303)
T cd05110         232 --QPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARDP  272 (303)
T ss_pred             --CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhch
Confidence              11123356889999999999999999999999999986553

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=2.9e-34  Score=294.20  Aligned_cols=231  Identities=18%  Similarity=0.216  Sum_probs=174.3

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHH-HHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKID-TLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~-~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||+|+.. ++..+|+|++.......  ......+.+|.. +++.++||||+++++++...+  ..++|||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~--~~~lv~e   76 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILK--KKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAE--KLYFVLD   76 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHH--hhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCC--EEEEEEc
Confidence            36999999999999964 67899999886433211  122344555554 678899999999999998777  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh---
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~---  458 (592)
                      |+++|+|..++..  ...+.......++.|++.||+|||+.+  |+||||||+||+++.++.+||+|||+++.....   
T Consensus        77 ~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~L~~lH~~~--ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~  152 (321)
T cd05603          77 YVNGGELFFHLQR--ERCFLEPRARFYAAEVASAIGYLHSLN--IIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEET  152 (321)
T ss_pred             CCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCc
Confidence            9999999887753  345788888899999999999999998  999999999999999999999999998753211   


Q ss_pred             ------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          459 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       459 ------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            ...+.+++......++.++|||||||++|||+||+.||...  +..+..........           ..+...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~--~~~~~~~~i~~~~~-----------~~~~~~  219 (321)
T cd05603         153 TSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSR--DVSQMYDNILHKPL-----------QLPGGK  219 (321)
T ss_pred             cccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCC--CHHHHHHHHhcCCC-----------CCCCCC
Confidence                  11223333333344688999999999999999999999533  33333333332211           112223


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMR  555 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~  555 (592)
                      ...+.+++.+|++.||.+||+..
T Consensus       220 ~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         220 TVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             CHHHHHHHHHHccCCHhhcCCCC
Confidence            35688999999999999999764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-34  Score=300.61  Aligned_cols=240  Identities=18%  Similarity=0.247  Sum_probs=181.4

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+++.. +++.||||++.......  ......+.+|++++..++|+||+++++++....  ..++||
T Consensus         5 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~--~~~lv~   80 (364)
T cd05599           5 SIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLE--KEQVAHVRAERDILAEADNPWVVKLYYSFQDEN--YLYLIM   80 (364)
T ss_pred             EEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCC--eEEEEE
Confidence            3578999999999999964 68899999986532211  233456889999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh--
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~--  458 (592)
                      ||+++|+|.+++..  ...+++.....++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus        81 E~~~~g~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~lH~~~--ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  156 (364)
T cd05599          81 EYLPGGDMMTLLMK--KDTFTEEETRFYIAETILAIDSIHKLG--YIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHR  156 (364)
T ss_pred             CCCCCcHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCCHHHeEECCCCCEEEeecccceecccccc
Confidence            99999999999864  346899999999999999999999999  999999999999999999999999998654211  


Q ss_pred             ---------------------------------------------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCC
Q 007711          459 ---------------------------------------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGR  493 (592)
Q Consensus       459 ---------------------------------------------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~  493 (592)
                                                                   ...+.+|+......++.++|||||||++|||++|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~  236 (364)
T cd05599         157 TEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGY  236 (364)
T ss_pred             ccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCC
Confidence                                                         11122223223334688999999999999999999


Q ss_pred             CcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCC---HHHHHH
Q 007711          494 LPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT---MRDIAA  559 (592)
Q Consensus       494 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs---~~ev~~  559 (592)
                      .||...  +..+.............   -+..    ......+.+++.+|+. +|.+|++   ++|+++
T Consensus       237 ~Pf~~~--~~~~~~~~i~~~~~~~~---~~~~----~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~  295 (364)
T cd05599         237 PPFCSD--NPQETYRKIINWKETLQ---FPDE----VPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKS  295 (364)
T ss_pred             CCCCCC--CHHHHHHHHHcCCCccC---CCCC----CCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhc
Confidence            999533  23333333322111111   0110    1123467889999996 8999998   887765

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=2.3e-34  Score=295.44  Aligned_cols=234  Identities=18%  Similarity=0.218  Sum_probs=177.4

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHH-HHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKID-TLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~-~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||+|+. .+|..+|+|++.......  ......+..|.. +++.++||||+++++++...+  ..++|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~--~~~lv~e   76 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLN--RKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTE--KLYFVLD   76 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCC--EEEEEEc
Confidence            3699999999999985 468899999886543211  122345556655 467799999999999998776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh----
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  457 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~----  457 (592)
                      |+++|+|..++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....    
T Consensus        77 ~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH~~g--ivH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~  152 (325)
T cd05604          77 FVNGGELFFHLQR--ERSFPEPRARFYAAEIASALGYLHSIN--IVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDT  152 (325)
T ss_pred             CCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCC
Confidence            9999999888753  356889999999999999999999998  99999999999999999999999999875321    


Q ss_pred             -----hhhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          458 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       458 -----~~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                           +...+.+++......++.++|||||||++|||++|+.||..  .+..+...........    ..+       ..
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~--~~~~~~~~~~~~~~~~----~~~-------~~  219 (325)
T cd05604         153 TTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYC--RDVAEMYDNILHKPLV----LRP-------GA  219 (325)
T ss_pred             cccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCC--CCHHHHHHHHHcCCcc----CCC-------CC
Confidence                 11123334443444468899999999999999999999943  3334444443332111    111       22


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMRDIA  558 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~ev~  558 (592)
                      ...+.+++.+|++.+|.+||++++.+
T Consensus       220 ~~~~~~ll~~ll~~~p~~R~~~~~~~  245 (325)
T cd05604         220 SLTAWSILEELLEKDRQRRLGAKEDF  245 (325)
T ss_pred             CHHHHHHHHHHhccCHHhcCCCCCCH
Confidence            34678999999999999999886433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=6.4e-34  Score=281.65  Aligned_cols=240  Identities=19%  Similarity=0.263  Sum_probs=188.1

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||.++. .++..+++|.+......   ....+++.+|++++++++|+||+++++++...+  ..+++|
T Consensus         4 ~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~~~~   78 (256)
T cd08221           4 PIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLS---EKERRDALNEIVILSLLQHPNIIAYYNHFMDDN--TLLIEM   78 (256)
T ss_pred             EeeEecccCCceEEEEEEcCCCcEEEEEEEeecccc---hhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCC--eEEEEE
Confidence            457899999999998884 46888999987654322   234567899999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++.......+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++...... 
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~  156 (256)
T cd08221          79 EYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAG--ILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYS  156 (256)
T ss_pred             EecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCC--ccccCCChHhEEEeCCCCEEECcCcceEEcccccc
Confidence            9999999999987554567899999999999999999999998  9999999999999999999999999987653322 


Q ss_pred             --------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 --------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 --------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                              ..+.+++.......+.++||||||+++|||++|+.||..  ....+.......+.  ...        ....
T Consensus       157 ~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~--~~~~~~~~~~~~~~--~~~--------~~~~  224 (256)
T cd08221         157 MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDA--TNPLNLVVKIVQGN--YTP--------VVSV  224 (256)
T ss_pred             cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHcCC--CCC--------Cccc
Confidence                    111223333333357889999999999999999999943  33334444433321  111        1122


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      .+..+.+++.+||+.+|++||++.++++.
T Consensus       225 ~~~~~~~~i~~~l~~~p~~R~s~~~ll~~  253 (256)
T cd08221         225 YSSELISLVHSLLQQDPEKRPTADEVLDQ  253 (256)
T ss_pred             cCHHHHHHHHHHcccCcccCCCHHHHhhC
Confidence            34568899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=7.1e-34  Score=283.19  Aligned_cols=241  Identities=16%  Similarity=0.244  Sum_probs=180.1

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|+||.||+|.. ..+..+++|.+...............+.+|+.++++++|+||+++++++........++++|
T Consensus         7 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~~e   86 (266)
T cd06651           7 GKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFME   86 (266)
T ss_pred             cceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEEEe
Confidence            47899999999999986 45889999987654333222334567889999999999999999999887643335789999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh--
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~--  459 (592)
                      |+++++|.+++..  ...+++.....++.+++.|++|||+++  ++||||||+||++++++.+||+|||+++......  
T Consensus        87 ~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~LH~~~--i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  162 (266)
T cd06651          87 YMPGGSVKDQLKA--YGALTESVTRKYTRQILEGMSYLHSNM--IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMS  162 (266)
T ss_pred             CCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEECCCCCEEEccCCCcccccccccc
Confidence            9999999998863  235789999999999999999999988  9999999999999999999999999987543211  


Q ss_pred             ----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          460 ----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       460 ----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                                ..+.+++......++.++|||||||++|||+||+.||...  ...+.........      ..+   .++
T Consensus       163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~--~~~~~~~~~~~~~------~~~---~~~  231 (266)
T cd06651         163 GTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEY--EAMAAIFKIATQP------TNP---QLP  231 (266)
T ss_pred             CCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCcccc--chHHHHHHHhcCC------CCC---CCc
Confidence                      1122233333334678999999999999999999999532  2222222211110      011   122


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ......+.+++ +||..+|++||+|+||+.
T Consensus       232 ~~~~~~~~~li-~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         232 SHISEHARDFL-GCIFVEARHRPSAEELLR  260 (266)
T ss_pred             hhcCHHHHHHH-HHhcCChhhCcCHHHHhc
Confidence            23334566776 788899999999999964

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=2.6e-34  Score=295.04  Aligned_cols=234  Identities=19%  Similarity=0.210  Sum_probs=174.9

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHH-HHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKID-TLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~-~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||+++.. ++..+|+|++.......  ......+..|.. +++.++|+||+++++++...+  ..++|||
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~--~~~lv~e   76 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILK--KKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTAD--KLYFVLD   76 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHh--hhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCC--eEEEEEe
Confidence            36999999999999965 56789999886432211  112334444444 567889999999999998777  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh---
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~---  458 (592)
                      |+++|+|.+++..  ...+.......++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....   
T Consensus        77 ~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH~~g--iiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~  152 (325)
T cd05602          77 YINGGELFYHLQR--ERCFLEPRARFYAAEIASALGYLHSLN--IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGT  152 (325)
T ss_pred             CCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHeEECCCCCEEEccCCCCcccccCCCC
Confidence            9999999998863  345777888889999999999999999  999999999999999999999999998753211   


Q ss_pred             ------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          459 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       459 ------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            ...+.+++......++.++|||||||++|||++|+.||..  ....+...........           .....
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~--~~~~~~~~~i~~~~~~-----------~~~~~  219 (325)
T cd05602         153 TSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYS--RNTAEMYDNILNKPLQ-----------LKPNI  219 (325)
T ss_pred             cccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCC--CCHHHHHHHHHhCCcC-----------CCCCC
Confidence                  1122333333344478899999999999999999999953  3333333333322111           11123


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMRDIA  558 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~ev~  558 (592)
                      ...+.+++.+|++.||.+||++.+.+
T Consensus       220 ~~~~~~li~~~l~~~p~~R~~~~~~~  245 (325)
T cd05602         220 TNSARHLLEGLLQKDRTKRLGAKDDF  245 (325)
T ss_pred             CHHHHHHHHHHcccCHHHCCCCCCCH
Confidence            34688999999999999999987544

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-34  Score=301.06  Aligned_cols=240  Identities=21%  Similarity=0.300  Sum_probs=184.6

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. ++..||+|++.......  ......+.+|++++..++|+||+++++++...+  ..++||
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv~   80 (350)
T cd05573           5 VIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIK--RNQIAHVRAERDILADADSPWIVKLYYSFQDEE--HLYLVM   80 (350)
T ss_pred             EEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhh--ccHHHHHHHHHHHHHhcCCCCccchhhheecCC--eEEEEE
Confidence            4578999999999999965 68899999986543211  134567899999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++...  ..+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...... 
T Consensus        81 e~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~g--iiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~  156 (350)
T cd05573          81 EYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVHKLG--FIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKD  156 (350)
T ss_pred             cCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHeEECCCCCEEeecCCCCccCcccCc
Confidence            999999999998643  56889999999999999999999988  9999999999999999999999999987654322 


Q ss_pred             -------------------------------------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCC
Q 007711          460 -------------------------------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS  502 (592)
Q Consensus       460 -------------------------------------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~  502 (592)
                                                           ..+.+++......++.++|||||||++|||+||+.||....  
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~--  234 (350)
T cd05573         157 REYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDT--  234 (350)
T ss_pred             ccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCC--
Confidence                                                 11122232233347889999999999999999999995433  


Q ss_pred             hHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCC-HHHHHH
Q 007711          503 LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT-MRDIAA  559 (592)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-~~ev~~  559 (592)
                      ..+............   ..+...    ..+..+.+++.+|++ ||.+||+ ++++++
T Consensus       235 ~~~~~~~i~~~~~~~---~~p~~~----~~~~~~~~li~~ll~-dp~~R~~s~~~ll~  284 (350)
T cd05573         235 LQETYNKIINWKESL---RFPPDP----PVSPEAIDLICRLLC-DPEDRLGSFEEIKS  284 (350)
T ss_pred             HHHHHHHHhccCCcc---cCCCCC----CCCHHHHHHHHHHcc-ChhhcCCCHHHHhc
Confidence            233222222211111   111111    134568899999997 9999999 999986

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=2.6e-34  Score=293.70  Aligned_cols=234  Identities=19%  Similarity=0.248  Sum_probs=177.0

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc-CCCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK-VNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~-l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||+|+.. +|..||+|.+.......  ......+..|..++.. .+|+||+++++++...+  ..++|||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~--~~~lv~E   76 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLI--DDDVECTMVEKRVLALAWENPFLTHLYCTFQTKE--HLFFVME   76 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--cchHHHHHHHHHHHHhccCCCCccCeeEEEEeCC--EEEEEEC
Confidence            36999999999999965 57899999886543211  1123456677777765 48999999999998876  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh---
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~---  458 (592)
                      |+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....   
T Consensus        77 ~~~~g~L~~~i~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  152 (316)
T cd05620          77 FLNGGDLMFHIQD--KGRFDLYRATFYAAEIVCGLQFLHSKG--IIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNR  152 (316)
T ss_pred             CCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHeEECCCCCEEeCccCCCeecccCCCc
Confidence            9999999988863  346889999999999999999999998  999999999999999999999999998743211   


Q ss_pred             ------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          459 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       459 ------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            ...+.+|+......++.++|||||||++|||+||+.||...  +..+.........        +   ..+...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~--~~~~~~~~~~~~~--------~---~~~~~~  219 (316)
T cd05620         153 ASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGD--DEDELFESIRVDT--------P---HYPRWI  219 (316)
T ss_pred             eeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCC--CHHHHHHHHHhCC--------C---CCCCCC
Confidence                  11223334333344788999999999999999999999532  2333333222111        1   111123


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHH-HHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMR-DIA  558 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~-ev~  558 (592)
                      ..++.+++.+||+.||++||++. ++.
T Consensus       220 ~~~~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         220 TKESKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             CHHHHHHHHHHccCCHHHcCCChHHHH
Confidence            35688999999999999999984 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=6.5e-34  Score=281.92  Aligned_cols=239  Identities=28%  Similarity=0.420  Sum_probs=188.0

Q ss_pred             cccCcCCCeEEEEEEeCC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          304 NVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.||+|+||.||+|....    +..+++|.+......    ...+.+.+|++.++.++|+||+++++++....  ..++|
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~----~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv   74 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASE----EERKDFLKEARVMKKLGHPNVVRLLGVCTEEE--PLYLV   74 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccch----hHHHHHHHHHHHHhhcCCCChheeeeeecCCC--ceEEE
Confidence            469999999999999754    788999987644322    13578999999999999999999999998866  67999


Q ss_pred             EeeCCCCCchhhccccC-------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcc
Q 007711          380 FEYAPNGTLFEHIHIKE-------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  452 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~-------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla  452 (592)
                      +||+++|+|.+++....       ...+++..+.+++.+++.|++|||+.+  ++||||||+||++++++.+||+|||.+
T Consensus        75 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~--i~H~di~p~nili~~~~~~~l~dfg~~  152 (262)
T cd00192          75 LEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKK--FVHRDLAARNCLVGEDLVVKISDFGLS  152 (262)
T ss_pred             EEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC--cccCccCcceEEECCCCcEEEcccccc
Confidence            99999999999987532       367899999999999999999999998  999999999999999999999999999


Q ss_pred             hhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          453 NEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       453 ~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      +......           ..+.+|+......++.++|||||||++|||++ |+.||...  ...+........ .     
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~--~~~~~~~~~~~~-~-----  224 (262)
T cd00192         153 RDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGL--SNEEVLEYLRKG-Y-----  224 (262)
T ss_pred             cccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHcC-C-----
Confidence            8765321           11222332222346889999999999999999 69999533  333333333221 1     


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                          ....+..++.++.+++.+||+.+|++||++.|+++.|+
T Consensus       225 ----~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         225 ----RLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             ----CCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence                01112333567999999999999999999999998774

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=1.3e-34  Score=297.98  Aligned_cols=241  Identities=18%  Similarity=0.264  Sum_probs=184.0

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+++.. ++..+|+|.+.......  ....+.+.+|+.+++.++|+||+++++++....  ..++||
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~--~~~lv~   80 (330)
T cd05601           5 VKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLA--QETVSFFEEERDILSISNSPWIPQLQYAFQDKD--NLYLVM   80 (330)
T ss_pred             EEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhCCCCCCcceeeEEecCC--eEEEEE
Confidence            4578999999999999964 68899999887543211  234567889999999999999999999988776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++... ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...... 
T Consensus        81 e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~qi~~aL~~lH~~~--i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~  157 (330)
T cd05601          81 EYQPGGDLLSLLNRY-EDQFDEDMAQFYLAELVLAIHSVHQMG--YVHRDIKPENVLIDRTGHIKLADFGSAARLTANKM  157 (330)
T ss_pred             CCCCCCCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEcccCchHheEECCCCCEEeccCCCCeECCCCCc
Confidence            999999999998643 346899999999999999999999998  9999999999999999999999999987653211 


Q ss_pred             ---------hhhcccccCC------CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          460 ---------MAATSKKLSS------APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       460 ---------~~~~~~~~~~------~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                               ..+.+||...      ...++.++|||||||++|||+||+.||..  ....+............. .  +.
T Consensus       158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~--~~~~~~~~~i~~~~~~~~-~--~~  232 (330)
T cd05601         158 VNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHE--GTSAKTYNNIMNFQRFLK-F--PE  232 (330)
T ss_pred             eeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCC--CCHHHHHHHHHcCCCccC-C--CC
Confidence                     1222333221      23356889999999999999999999943  233333333332211111 0  11


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          ....+..+.+++..|++ +|++||++.+++.
T Consensus       233 ----~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~  262 (330)
T cd05601         233 ----DPKVSSDFLDLIQSLLC-GQKERLGYEGLCC  262 (330)
T ss_pred             ----CCCCCHHHHHHHHHHcc-ChhhCCCHHHHhC
Confidence                11223568899999997 9999999999874

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=3.1e-34  Score=294.25  Aligned_cols=232  Identities=17%  Similarity=0.183  Sum_probs=176.7

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCC-ceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK-NFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~-niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.+.||+|+||.||+|... ++..||+|++.......  ....+.+..|++++..++|+ +|+++++++...+  ..++|
T Consensus         4 ~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~--~~~lv   79 (324)
T cd05587           4 FLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQ--DDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD--RLYFV   79 (324)
T ss_pred             EEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCC--EEEEE
Confidence            4578999999999999965 46789999886533211  22345688899999999765 5888888887766  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      |||+++|+|.+++..  ...+++.....++.|++.||+|||+.+  |+||||||+|||+++++.+||+|||+++..... 
T Consensus        80 ~E~~~~g~L~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~  155 (324)
T cd05587          80 MEYVNGGDLMYHIQQ--VGKFKEPHAVFYAAEIAIGLFFLHSKG--IIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGG  155 (324)
T ss_pred             EcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHeEEcCCCCEEEeecCcceecCCCC
Confidence            999999999988863  346889999999999999999999998  999999999999999999999999998743211 


Q ss_pred             --------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          459 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       459 --------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                              ...+.+|+......++.++|||||||++|||+||+.||..  ....+...........           ++.
T Consensus       156 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~--~~~~~~~~~i~~~~~~-----------~~~  222 (324)
T cd05587         156 KTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDG--EDEDELFQSIMEHNVS-----------YPK  222 (324)
T ss_pred             CceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCC--CCHHHHHHHHHcCCCC-----------CCC
Confidence                    1122333433333468899999999999999999999953  2333333333222111           122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTM  554 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~  554 (592)
                      ....++.+++.+||+.||.+|++.
T Consensus       223 ~~~~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         223 SLSKEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             CCCHHHHHHHHHHhhcCHHHcCCC
Confidence            233568899999999999999976

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=2.8e-34  Score=286.39  Aligned_cols=236  Identities=19%  Similarity=0.259  Sum_probs=177.9

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      ..||+|+||.||+|... ++..+++|.+....     ....+.+.+|++++++++|+||++++|++...+  ..++|+||
T Consensus        14 ~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~   86 (268)
T cd06624          14 VVLGKGTYGIVYAARDLSTQVRIAIKEIPERD-----SRYVQPLHEEIALHSYLKHRNIVQYLGSDSENG--FFKIFMEQ   86 (268)
T ss_pred             EEEecCCceEEEEeEecCCCcEEEEEEecCCC-----HHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCC--EEEEEEec
Confidence            67999999999999954 57789998775432     223567899999999999999999999998876  67999999


Q ss_pred             CCCCCchhhccccCCCCC--CHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC-CCceEEecCCcchhhhhhh
Q 007711          383 APNGTLFEHIHIKESEHL--DWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l--~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~-~~~~ki~DfGla~~~~~~~  459 (592)
                      +++++|.++++... ..+  ++..+..++.|++.|++|||+.+  |+||||||+||+++. ++.+||+|||++.......
T Consensus        87 ~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~--i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~  163 (268)
T cd06624          87 VPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLKYLHDNQ--IVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGIN  163 (268)
T ss_pred             CCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHHHHHCC--EeecCCCHHHEEEcCCCCeEEEecchhheecccCC
Confidence            99999999987432 234  77888899999999999999998  999999999999986 6799999999987543211


Q ss_pred             ---------hhhcccccCCC--CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          460 ---------MAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       460 ---------~~~~~~~~~~~--~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                               ..+.+++....  ..++.++|||||||++|||++|+.||.................          .....
T Consensus       164 ~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~~----------~~~~~  233 (268)
T cd06624         164 PCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMFK----------IHPEI  233 (268)
T ss_pred             CccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhhc----------cCCCC
Confidence                     11222332211  1257789999999999999999999953222111111100000          01112


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      +.....++.+++.+||+.+|++||++.|++.
T Consensus       234 ~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         234 PESLSAEAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             CcccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence            2334467889999999999999999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=2.3e-34  Score=318.72  Aligned_cols=253  Identities=18%  Similarity=0.233  Sum_probs=189.4

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.++||+|+||.||+|... .|+.||+|++......  .....++|.+|++++++++||||+++++++...+  ..++||
T Consensus         6 Ii~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~--~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~--~lyLVM   81 (932)
T PRK13184          6 IIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSE--NPLLKKRFLREAKIAADLIHPGIVPVYSICSDGD--PVYYTM   81 (932)
T ss_pred             EEEEEecCCCEEEEEEEECCCCcEEEEEEECccccc--CHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCC--EEEEEE
Confidence            4578999999999999964 5889999988643322  1334567999999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhcccc---------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCc
Q 007711          381 EYAPNGTLFEHIHIK---------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF  451 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~---------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGl  451 (592)
                      ||+++|+|.+++...         ....+++...++++.++++||+|||+.+  |+||||||+|||++.++.+||+|||+
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~G--IIHRDLKPeNILLd~dg~vKLiDFGL  159 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKG--VLHRDLKPDNILLGLFGEVVILDWGA  159 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCC--ccccCCchheEEEcCCCCEEEEecCc
Confidence            999999999988531         1234667888999999999999999998  99999999999999999999999999


Q ss_pred             chhhhhhhh---------------------hhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChH
Q 007711          452 WNEIAMAEM---------------------AATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE  504 (592)
Q Consensus       452 a~~~~~~~~---------------------~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~  504 (592)
                      ++.......                     ....+..+++||      ++.++|||||||++|||+||+.||......  
T Consensus       160 Ak~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~--  237 (932)
T PRK13184        160 AIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGR--  237 (932)
T ss_pred             ceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchh--
Confidence            986521000                     001112334443      688999999999999999999999542221  


Q ss_pred             HHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHhhhCCCCC
Q 007711          505 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP-TMRDIAAILREITGITPD  570 (592)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-s~~ev~~~L~~i~~~~~~  570 (592)
                      +.....        .+.++.........+..+.+++.+||+.||++|| +++++.+.|+..+...++
T Consensus       238 ki~~~~--------~i~~P~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq~~p~  296 (932)
T PRK13184        238 KISYRD--------VILSPIEVAPYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPHLQGSPE  296 (932)
T ss_pred             hhhhhh--------hccChhhccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhcCcc
Confidence            111100        0011110000122345688999999999999995 788888999988776443

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=5.5e-34  Score=288.63  Aligned_cols=236  Identities=19%  Similarity=0.297  Sum_probs=182.8

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|.. .++..+++|.+......     ..+.+.+|+.+++.++|+||+++++++....  ..++||
T Consensus        24 ~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~-----~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~--~~~lv~   96 (296)
T cd06654          24 RFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP-----KKELIINEILVMRENKNPNIVNYLDSYLVGD--ELWVVM   96 (296)
T ss_pred             eEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcc-----hHHHHHHHHHHHHhCCCCCEeeEEEEEEeCC--EEEEee
Confidence            346799999999999985 46889999987653322     2466889999999999999999999998766  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++..   ..+++.....++.+++.|++|||+.+  |+||||||+||+++.++.+||+|||+++...... 
T Consensus        97 e~~~~~~L~~~~~~---~~~~~~~~~~i~~ql~~aL~~LH~~g--i~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~  171 (296)
T cd06654          97 EYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  171 (296)
T ss_pred             cccCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEcCCCCEEECccccchhcccccc
Confidence            99999999998853   35789999999999999999999998  9999999999999999999999999987643211 


Q ss_pred             --------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 --------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 --------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                              ..+.+|+......++.++|||||||++|||+||+.||.....  .+.........  ....      ..+..
T Consensus       172 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~--~~~~~~~~~~~--~~~~------~~~~~  241 (296)
T cd06654         172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP--LRALYLIATNG--TPEL------QNPEK  241 (296)
T ss_pred             ccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCH--HHhHHHHhcCC--CCCC------CCccc
Confidence                    112233333334467899999999999999999999954332  22111111111  0000      11223


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+.+++.+||..+|++||++.|++.
T Consensus       242 ~~~~l~~li~~~l~~~p~~Rpt~~eil~  269 (296)
T cd06654         242 LSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (296)
T ss_pred             cCHHHHHHHHHHCcCCcccCcCHHHHhh
Confidence            3456889999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=4.6e-34  Score=297.63  Aligned_cols=242  Identities=17%  Similarity=0.239  Sum_probs=177.4

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... +++.+|+|++.......  ......+.+|++++.+++|+||+++++++.+..  ..++||
T Consensus         5 ~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~--~~~lv~   80 (363)
T cd05628           5 SLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLE--KEQVGHIRAERDILVEADSLWVVKMFYSFQDKL--NLYLIM   80 (363)
T ss_pred             EeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHH--hhHHHHHHHHHHHHHhCCCCCcceEEEEEecCC--eEEEEE
Confidence            3578999999999999854 58899999886432211  223457888999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh--
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~--  458 (592)
                      ||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus        81 E~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~lH~~g--ivHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~  156 (363)
T cd05628          81 EFLPGGDMMTLLMK--KDTLTEEETQFYIAETVLAIDSIHQLG--FIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHR  156 (363)
T ss_pred             cCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eEecCCCHHHeEECCCCCEEEeeccCccccccccc
Confidence            99999999999863  356899999999999999999999998  999999999999999999999999998754211  


Q ss_pred             ------------------------------------------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcc
Q 007711          459 ------------------------------------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPY  496 (592)
Q Consensus       459 ------------------------------------------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~  496 (592)
                                                                ...+.+|+......++.++|||||||++|||++|+.||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf  236 (363)
T cd05628         157 TEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPF  236 (363)
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCC
Confidence                                                      01112223222334688999999999999999999999


Q ss_pred             cCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH--hcccCCCCCCCHHHHHHH
Q 007711          497 LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKS--CVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Cl~~dP~~RPs~~ev~~~  560 (592)
                      ...  ...+............  .+++. ...    ...+.+++.+  |...++..||+++|+++.
T Consensus       237 ~~~--~~~~~~~~i~~~~~~~--~~p~~-~~~----s~~~~~li~~l~~~~~~r~~r~~~~ei~~h  293 (363)
T cd05628         237 CSE--TPQETYKKVMNWKETL--IFPPE-VPI----SEKAKDLILRFCCEWEHRIGAPGVEEIKTN  293 (363)
T ss_pred             CCC--CHHHHHHHHHcCcCcc--cCCCc-CCC----CHHHHHHHHHHcCChhhcCCCCCHHHHhCC
Confidence            532  2333333332211111  11111 111    2345666665  433445567999999764

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=6.9e-34  Score=281.41  Aligned_cols=239  Identities=20%  Similarity=0.336  Sum_probs=188.8

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++.. .+|..+++|.+......   ....+++.+|++++++++|+||+++++++...+  ..++|+
T Consensus         4 ~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~   78 (256)
T cd08218           4 KVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMS---PKEREESRKEVAVLSNMKHPNIVQYQESFEENG--NLYIVM   78 (256)
T ss_pred             EEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCC---hHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCC--eEEEEE
Confidence            457899999999999985 46889999988643322   233467899999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++++|.+++.......+++....+++.+++.|++|||+++  ++|+||+|+||+++.++.++|+|||++........
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~  156 (256)
T cd08218          79 DYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRK--ILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVE  156 (256)
T ss_pred             ecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEcCCCCEEEeeccceeecCcchh
Confidence            9999999999887554556889999999999999999999998  99999999999999999999999999876532211


Q ss_pred             ---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          461 ---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       461 ---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                               .+.+++.......+.++|||||||++||++||+.||..  ....+.+.....+...          ..+..
T Consensus       157 ~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~  224 (256)
T cd08218         157 LARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEA--GNMKNLVLKIIRGSYP----------PVSSH  224 (256)
T ss_pred             hhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccC--CCHHHHHHHHhcCCCC----------CCccc
Confidence                     12223333333467899999999999999999999943  3444444444433211          11223


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+.+++.+||+.+|++||++.+|++
T Consensus       225 ~~~~~~~li~~~l~~~p~~Rp~~~~vl~  252 (256)
T cd08218         225 YSYDLRNLVSQLFKRNPRDRPSVNSILE  252 (256)
T ss_pred             CCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence            3457899999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=3.2e-34  Score=299.19  Aligned_cols=242  Identities=20%  Similarity=0.255  Sum_probs=182.0

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ..+.+.||+|+||.||+++.. ++..+|+|.+.......  ......+.+|+.+++.++||||+++++++....  ..++
T Consensus        45 y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~--~~~l  120 (370)
T cd05596          45 FDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIK--RSDSAFFWEERDIMAHANSEWIVQLHYAFQDDK--YLYM  120 (370)
T ss_pred             cEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhhHHHHHHHHHHHHhCCCCCcceEEEEEecCC--EEEE
Confidence            344588999999999999964 68899999886432111  123445788999999999999999999988776  6899


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||||+++|+|.++++.   ..++......++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....
T Consensus       121 v~Ey~~gg~L~~~l~~---~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~  195 (370)
T cd05596         121 VMEYMPGGDLVNLMSN---YDIPEKWARFYTAEVVLALDAIHSMG--FIHRDVKPDNMLLDKSGHLKLADFGTCMKMDAN  195 (370)
T ss_pred             EEcCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHEEEcCCCCEEEEeccceeeccCC
Confidence            9999999999998863   24677788889999999999999998  999999999999999999999999998765321


Q ss_pred             hh----hhcccccCCCCC----------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          459 EM----AATSKKLSSAPS----------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       459 ~~----~~~~~~~~~~~~----------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ..    .......+++||          ++.++|||||||++|||+||+.||...  +..............+.   .+.
T Consensus       196 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~--~~~~~~~~i~~~~~~~~---~~~  270 (370)
T cd05596         196 GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD--SLVGTYSKIMDHKNSLT---FPD  270 (370)
T ss_pred             CcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCC--CHHHHHHHHHcCCCcCC---CCC
Confidence            11    001112233333          678999999999999999999999533  23333333332211111   111


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCC--CCCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEK--RPTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~--RPs~~ev~~  559 (592)
                          ....+..+.+++.+|++.+|++  ||++.|+++
T Consensus       271 ----~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~  303 (370)
T cd05596         271 ----DIEISKQAKDLICAFLTDREVRLGRNGVDEIKS  303 (370)
T ss_pred             ----cCCCCHHHHHHHHHHccChhhccCCCCHHHHhc
Confidence                1122357889999999999988  999999965

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=4.9e-34  Score=292.69  Aligned_cols=232  Identities=16%  Similarity=0.175  Sum_probs=178.1

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.+.||+|+||.||+|... ++..+|+|.+.......  ....+.+..|..++..+ +|++|+++++++...+  ..++|
T Consensus         4 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~--~~~lv   79 (323)
T cd05616           4 FLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQ--DDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMD--RLYFV   79 (323)
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCC--EEEEE
Confidence            4578999999999999865 57789999886533211  22334567788888777 5899999999988776  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh--
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  457 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~--  457 (592)
                      |||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....  
T Consensus        80 ~E~~~~g~L~~~~~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~  155 (323)
T cd05616          80 MEYVNGGDLMYQIQQ--VGRFKEPHAVFYAAEIAIGLFFLHSKG--IIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDG  155 (323)
T ss_pred             EcCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--EEecCCCHHHeEECCCCcEEEccCCCceecCCCC
Confidence            999999999988853  346889999999999999999999998  99999999999999999999999999875321  


Q ss_pred             -------hhhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          458 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       458 -------~~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                             +...+.+|+......++.++|||||||++|||+||+.||..  ....+...........           ++.
T Consensus       156 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~  222 (323)
T cd05616         156 VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEG--EDEDELFQSIMEHNVA-----------YPK  222 (323)
T ss_pred             CccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCC-----------CCC
Confidence                   11223344444444578999999999999999999999953  3333333333322111           122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTM  554 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~  554 (592)
                      ....++.+++.+|++.||++|++.
T Consensus       223 ~~s~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         223 SMSKEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             cCCHHHHHHHHHHcccCHHhcCCC
Confidence            234568899999999999999984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=3.8e-34  Score=285.21  Aligned_cols=241  Identities=18%  Similarity=0.216  Sum_probs=180.7

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|+. .++..+++|++......     ....+.+|+.++++++|+||+++++++...+  ..++|
T Consensus        12 ~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~-----~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~--~~~iv   84 (267)
T cd06646          12 ELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGD-----DFSLIQQEIFMVKECKHCNIVAYFGSYLSRE--KLWIC   84 (267)
T ss_pred             chhheeecCCCeEEEEEEECCCCeEEEEEEEecCccc-----hHHHHHHHHHHHHhcCCCCeeeeeEEEEeCC--EEEEE
Confidence            3457899999999999996 56788999988643221     2346788999999999999999999998776  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||+++|+|.++++.  ...+++..+..++.|++.|+.|||+.+  |+||||||+||++++++.+||+|||+++......
T Consensus        85 ~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd06646          85 MEYCGGGSLQDIYHV--TGPLSELQIAYVCRETLQGLAYLHSKG--KMHRDIKGANILLTDNGDVKLADFGVAAKITATI  160 (267)
T ss_pred             EeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEECCCCCEEECcCccceeecccc
Confidence            999999999998863  346789999999999999999999988  9999999999999999999999999987653211


Q ss_pred             ---------hhhcccccC---CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          460 ---------MAATSKKLS---SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       460 ---------~~~~~~~~~---~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                               ..+.+++..   ....++.++|||||||++|||+||+.||.....  .+..... .. ..   ...+... 
T Consensus       161 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~--~~~~~~~-~~-~~---~~~~~~~-  232 (267)
T cd06646         161 AKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHP--MRALFLM-SK-SN---FQPPKLK-  232 (267)
T ss_pred             cccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccch--hhhheee-ec-CC---CCCCCCc-
Confidence                     112222221   122256789999999999999999999842211  1100000 00 00   0111111 


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      .....+..+.+++.+||+.+|++||+++++++.
T Consensus       233 ~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  265 (267)
T cd06646         233 DKTKWSSTFHNFVKISLTKNPKKRPTAERLLTH  265 (267)
T ss_pred             cccccCHHHHHHHHHHhhCChhhCcCHHHHhcC
Confidence            112234578999999999999999999998764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=1.9e-34  Score=290.37  Aligned_cols=241  Identities=20%  Similarity=0.272  Sum_probs=182.9

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|+||.||++... +++.+|+|.+.......  ......+.+|+.++++++|+|++++++.+...+  ..++|||
T Consensus         5 ~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~--~~~lv~e   80 (285)
T cd05630           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK--RKGESMALNEKQILEKVNSRFVVSLAYAYETKD--ALCLVLT   80 (285)
T ss_pred             eEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccc--hHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCC--EEEEEEE
Confidence            467999999999999964 68899999876443221  223456788999999999999999999998776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh--
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~--  459 (592)
                      |+++|+|.+++.......+++..+..++.+++.|+.|||+.+  |+||||||+||++++++.++|+|||++.......  
T Consensus        81 ~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~--iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~  158 (285)
T cd05630          81 LMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQER--IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTI  158 (285)
T ss_pred             ecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC--EEeCCCCHHHEEECCCCCEEEeeccceeecCCCccc
Confidence            999999999886544456899999999999999999999988  9999999999999999999999999987543211  


Q ss_pred             ------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCCh-HHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          460 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-EDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       460 ------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            ..+.+++......++.++|||||||++|||++|+.||....... .+........   ...       ..+...
T Consensus       159 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~  228 (285)
T cd05630         159 KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKE---VQE-------EYSEKF  228 (285)
T ss_pred             cCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhh---hhh-------hcCccC
Confidence                  11223333333346889999999999999999999996432211 1111111111   000       111223


Q ss_pred             HHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRPT-----MRDIAA  559 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs-----~~ev~~  559 (592)
                      ...+.+++.+||+.||++||+     ++|+++
T Consensus       229 ~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~  260 (285)
T cd05630         229 SPDARSLCKMLLCKDPKERLGCQGGGAREVKE  260 (285)
T ss_pred             CHHHHHHHHHHhhcCHHHccCCCCCchHHHHc
Confidence            346889999999999999999     777765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.8e-34  Score=299.91  Aligned_cols=241  Identities=16%  Similarity=0.211  Sum_probs=178.8

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++.. .++..||+|.+......  .....+.+.+|++++.+++||||+++++++.+..  ..++||
T Consensus         5 ~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~--~~~lv~   80 (377)
T cd05629           5 TVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMF--KKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQ--YLYLIM   80 (377)
T ss_pred             EeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHH--HhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCC--eeEEEE
Confidence            357899999999999985 46889999988643211  1233467889999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh---
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  457 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~---  457 (592)
                      ||+++|+|.+++..  ...+++.....++.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++.+..   
T Consensus        81 E~~~gg~L~~~l~~--~~~~~~~~~~~~~~ql~~aL~~LH~~g--ivHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~  156 (377)
T cd05629          81 EFLPGGDLMTMLIK--YDTFSEDVTRFYMAECVLAIEAVHKLG--FIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHD  156 (377)
T ss_pred             eCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHEEECCCCCEEEeecccccccccccc
Confidence            99999999998863  346788888899999999999999999  99999999999999999999999999863211   


Q ss_pred             -----------------------------------------------------hhhhhcccccCCCCCCCCCCcchhhHH
Q 007711          458 -----------------------------------------------------AEMAATSKKLSSAPSASLESNVYNFGV  484 (592)
Q Consensus       458 -----------------------------------------------------~~~~~~~~~~~~~~~~s~ksDVwSfGv  484 (592)
                                                                           +...+.+||......++.++|||||||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGv  236 (377)
T cd05629         157 SAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGA  236 (377)
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecch
Confidence                                                                 000112222222223688999999999


Q ss_pred             HHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCC---CCHHHHHHH
Q 007711          485 LLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKR---PTMRDIAAI  560 (592)
Q Consensus       485 vl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~R---Ps~~ev~~~  560 (592)
                      ++|||+||+.||....  ..+...........+.   -+..    .....++.+++.+|++ +|.+|   +++.|++..
T Consensus       237 il~elltG~~Pf~~~~--~~~~~~~i~~~~~~~~---~p~~----~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~h  305 (377)
T cd05629         237 IMFECLIGWPPFCSEN--SHETYRKIINWRETLY---FPDD----IHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSH  305 (377)
T ss_pred             hhhhhhcCCCCCCCCC--HHHHHHHHHccCCccC---CCCC----CCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcC
Confidence            9999999999995332  2332222222111110   0110    1123468899999997 66665   588888763

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=7.1e-34  Score=283.95  Aligned_cols=240  Identities=20%  Similarity=0.329  Sum_probs=180.2

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCC----c
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEP----F  374 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~----~  374 (592)
                      .+.+.||+|+||.||+|... ++..+|+|.+.....      ....+..|+.++.++ +|+||+++++++.....    .
T Consensus         9 ~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~------~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (272)
T cd06637           9 ELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD------EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDD   82 (272)
T ss_pred             hHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCc------cHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCc
Confidence            34567999999999999964 578889998754321      235688899999998 79999999999875421    2


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..++||||+++|+|.+++.......++|.....++.|++.|++|||+.+  ++||||||+||++++++.+||+|||+++.
T Consensus        83 ~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~--ivh~dl~~~nili~~~~~~~l~Dfg~~~~  160 (272)
T cd06637          83 QLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHK--VIHRDIKGQNVLLTENAEVKLVDFGVSAQ  160 (272)
T ss_pred             EEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCCHHHEEECCCCCEEEccCCCcee
Confidence            4689999999999999987555567899999999999999999999998  99999999999999999999999999875


Q ss_pred             hhhhh---------hhhcccccCC-----CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          455 IAMAE---------MAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       455 ~~~~~---------~~~~~~~~~~-----~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      .....         ..+.+++...     ...++.++|||||||++|||++|+.||..... .... ......  .....
T Consensus       161 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~-~~~~-~~~~~~--~~~~~  236 (272)
T cd06637         161 LDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP-MRAL-FLIPRN--PAPRL  236 (272)
T ss_pred             cccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCH-HHHH-HHHhcC--CCCCC
Confidence            43211         1122333221     12356789999999999999999999943221 1111 111111  11111


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .       ....+..+.+++.+||..+|.+||++.|+++
T Consensus       237 ~-------~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         237 K-------SKKWSKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             C-------CCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence            1       1123356889999999999999999999874

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-35  Score=291.96  Aligned_cols=234  Identities=18%  Similarity=0.306  Sum_probs=185.7

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      +.||+|.||.||||.. ..++.||+|++.....++    ..++..+|+.++..++|+||.+++|.+..+.  ..+++|||
T Consensus        19 ~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~d----eIediqqei~~Ls~~~~~~it~yygsyl~g~--~LwiiMey   92 (467)
T KOG0201|consen   19 ELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAED----EIEDIQQEISVLSQCDSPNITEYYGSYLKGT--KLWIIMEY   92 (467)
T ss_pred             hhccccccceeeeeeeccccceEEEEEechhhcch----hhHHHHHHHHHHHhcCcchHHhhhhheeecc--cHHHHHHH
Confidence            5799999999999995 568899999998766543    4567889999999999999999999998877  67999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh--
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM--  460 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~--  460 (592)
                      |.+|++.+.+...  ..++.....-|.+++..|+.|||..+  .+|||||+.|||+..++.+|++|||.+..+.....  
T Consensus        93 ~~gGsv~~lL~~~--~~~~E~~i~~ilre~l~~l~ylH~~~--kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr  168 (467)
T KOG0201|consen   93 CGGGSVLDLLKSG--NILDEFEIAVILREVLKGLDYLHSEK--KIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRR  168 (467)
T ss_pred             hcCcchhhhhccC--CCCccceeeeehHHHHHHhhhhhhcc--eecccccccceeEeccCcEEEEecceeeeeechhhcc
Confidence            9999999998643  33355555668889999999999998  99999999999999999999999999887653322  


Q ss_pred             -hhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          461 -AATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       461 -~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                       .-..+.+|++||      |+.|+||||+|++.+||.+|.+|+.....         ++-...+.+-..|.   +...+.
T Consensus       169 ~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hP---------mrvlflIpk~~PP~---L~~~~S  236 (467)
T KOG0201|consen  169 KTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHP---------MRVLFLIPKSAPPR---LDGDFS  236 (467)
T ss_pred             ccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCc---------ceEEEeccCCCCCc---cccccC
Confidence             223345777776      79999999999999999999999942211         00000111111222   233555


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+.+++..|+.+||+.||++.++++
T Consensus       237 ~~~kEFV~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  237 PPFKEFVEACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             HHHHHHHHHHhhcCcccCcCHHHHhh
Confidence            67999999999999999999998875

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=1.7e-33  Score=281.40  Aligned_cols=246  Identities=20%  Similarity=0.326  Sum_probs=184.0

Q ss_pred             hhcccCcCCCeEEEEEEeC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----
Q 007711          302 FSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----  373 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----  373 (592)
                      +.+.||+|+||.||+|.+.    .+..+|+|.+......   ....+++.+|++++++++||||+++++++.....    
T Consensus         3 ~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   79 (273)
T cd05074           3 LGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFS---SSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRL   79 (273)
T ss_pred             chhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCC---hHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcc
Confidence            3567999999999999863    3678999988643322   2345678899999999999999999998865431    


Q ss_pred             cceEEEEeeCCCCCchhhcccc----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecC
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIK----ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  449 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~----~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~Df  449 (592)
                      ...++++||+++|+|.+++...    ....+++....+++.+++.|++|||+.+  |+||||||+||++++++.+||+||
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~--i~H~dikp~nili~~~~~~kl~df  157 (273)
T cd05074          80 PIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKN--FIHRDLAARNCMLNENMTVCVADF  157 (273)
T ss_pred             cceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EeecccchhhEEEcCCCCEEECcc
Confidence            1247899999999998876422    2235788999999999999999999998  999999999999999999999999


Q ss_pred             Ccchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCC
Q 007711          450 SFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL  517 (592)
Q Consensus       450 Gla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~  517 (592)
                      |+++.......           .+.+++......++.++||||||+++|||++ |+.||...  ...+........ ...
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~--~~~~~~~~~~~~-~~~  234 (273)
T cd05074         158 GLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGV--ENSEIYNYLIKG-NRL  234 (273)
T ss_pred             cccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCC--CHHHHHHHHHcC-CcC
Confidence            99886532211           1111222222235788999999999999999 88888432  222222222211 111


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      .         .+...+..+.+++.+||+.+|++||++.++++.|+++
T Consensus       235 ~---------~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         235 K---------QPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             C---------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            0         1112345799999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=3.4e-34  Score=287.24  Aligned_cols=235  Identities=17%  Similarity=0.275  Sum_probs=182.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+.||+|+||.||+|... ++..||+|.+.....    ....+.+.+|++++++++|+||+++++++....  ..++|+
T Consensus         8 ~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   81 (277)
T cd06642           8 KLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEA----EDEIEDIQQEITVLSQCDSPYITRYYGSYLKGT--KLWIIM   81 (277)
T ss_pred             HHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccc----hHHHHHHHHHHHHHHcCCCCccHhhhcccccCC--ceEEEE
Confidence            3467999999999999864 577899987753321    234567899999999999999999999998766  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++++|.+++..   ..+++.....++.+++.|+.|||+.+  ++|+||+|+||++++++.+|++|||+++.......
T Consensus        82 e~~~~~~L~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~--ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~  156 (277)
T cd06642          82 EYLGGGSALDLLKP---GPLEETYIATILREILKGLDYLHSER--KIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI  156 (277)
T ss_pred             EccCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhcCC--eeccCCChheEEEeCCCCEEEccccccccccCcch
Confidence            99999999998853   45789999999999999999999988  99999999999999999999999999876542211


Q ss_pred             ---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          461 ---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       461 ---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                               .+.+++......++.++|||||||++|||+||+.||....  ...........       ..+   .....
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~--~~~~~~~~~~~-------~~~---~~~~~  224 (277)
T cd06642         157 KRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLH--PMRVLFLIPKN-------SPP---TLEGQ  224 (277)
T ss_pred             hhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccc--hhhHHhhhhcC-------CCC---CCCcc
Confidence                     1223333334456889999999999999999999984222  11111111100       011   11223


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+..+.+++.+||+.+|++||+|.++++
T Consensus       225 ~~~~~~~li~~~l~~~p~~Rp~~~~il~  252 (277)
T cd06642         225 YSKPFKEFVEACLNKDPRFRPTAKELLK  252 (277)
T ss_pred             cCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence            4457889999999999999999999987

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=9e-34  Score=291.14  Aligned_cols=233  Identities=20%  Similarity=0.235  Sum_probs=177.5

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||++... ++..+|+|++.......  ....+.+.+|+.++.++ +|+||+++++++....  ..++|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--~~~lv~e   76 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHD--DEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTS--RLFLVIE   76 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCC--EEEEEEe
Confidence            36999999999999964 57889999987543221  22345688899999888 6999999999988776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh----
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  457 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~----  457 (592)
                      |+++|+|..++..  ...+++..+..++.+++.|++|||+.+  ++||||||+|||++.++.+||+|||+++....    
T Consensus        77 ~~~~~~L~~~~~~--~~~l~~~~~~~~~~qi~~al~~lH~~~--ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  152 (327)
T cd05617          77 YVNGGDLMFHMQR--QRKLPEEHARFYAAEICIALNFLHERG--IIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDT  152 (327)
T ss_pred             CCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHEEEeCCCCEEEeccccceeccCCCCc
Confidence            9999999888753  346899999999999999999999998  99999999999999999999999999875321    


Q ss_pred             -----hhhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCC----CChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          458 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN----GSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       458 -----~~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                           +...+.+|+......++.++|||||||++|||+||+.||....    ....++........ ..         ..
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~-~~---------~~  222 (327)
T cd05617         153 TSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEK-PI---------RI  222 (327)
T ss_pred             eecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhC-CC---------CC
Confidence                 1112233444444457889999999999999999999995321    12222332222211 00         11


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTM  554 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~  554 (592)
                      +...+..+.+++.+||+.||++|+++
T Consensus       223 p~~~~~~~~~li~~~L~~dP~~R~~~  248 (327)
T cd05617         223 PRFLSVKASHVLKGFLNKDPKERLGC  248 (327)
T ss_pred             CCCCCHHHHHHHHHHhccCHHHcCCC
Confidence            22233568899999999999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=4.3e-34  Score=294.33  Aligned_cols=240  Identities=19%  Similarity=0.296  Sum_probs=180.2

Q ss_pred             hhcccCcCCCeEEEEEEe----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcce
Q 007711          302 FSNVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.+.||+|+||.||+++.    .++..+|+|++....... .....+.+..|++++..+ +|+||+++++++...+  ..
T Consensus         4 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~--~~   80 (332)
T cd05614           4 LLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQ-KAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEA--KL   80 (332)
T ss_pred             EEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhh-hhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCC--EE
Confidence            457899999999999875    357899999886432211 122345688899999999 5999999999888776  67


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++||||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus        81 ~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~  156 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQ--RDNFSEDEVRFYSGEIILALEHLHKLG--IVYRDIKLENILLDSEGHVVLTDFGLSKEFL  156 (332)
T ss_pred             EEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--cEecCCCHHHeEECCCCCEEEeeCcCCcccc
Confidence            999999999999998863  346889999999999999999999998  9999999999999999999999999987642


Q ss_pred             hhh----------hhhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCC--ChHHHHHHHhcCCCCCccccCC
Q 007711          457 MAE----------MAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       457 ~~~----------~~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ...          ..+.++|.... ..++.++|||||||++|||+||+.||.....  .............        +
T Consensus       157 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~--------~  228 (332)
T cd05614         157 SEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCD--------P  228 (332)
T ss_pred             ccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcCC--------C
Confidence            211          11222332222 2257789999999999999999999964322  2222222222211        1


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      .   ++......+.+++.+||+.||++||     +++++++
T Consensus       229 ~---~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~  266 (332)
T cd05614         229 P---FPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKE  266 (332)
T ss_pred             C---CCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHc
Confidence            1   1122335688999999999999999     6677764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.7e-34  Score=286.24  Aligned_cols=234  Identities=21%  Similarity=0.343  Sum_probs=173.9

Q ss_pred             cccCcCCCeEEEEEEeCC--------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          304 NVIGSSPIGTVYKGTLSN--------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~--------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.||+|+||.||+|....        ...+++|.+....     ....+.|.+|+.+++.++||||+++++++....  .
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~--~   73 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSH-----RNYSESFFEAASMMSQLSHKHLVLNYGVCVCGD--E   73 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchh-----HHHHHHHHHHHHHHHhCCCCChhheeeEEEeCC--C
Confidence            369999999999998642        2235566553221     234567899999999999999999999998766  5


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc--------eEEe
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA--------AKLS  447 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~--------~ki~  447 (592)
                      .++||||+++|+|.++++.. ...+++..+++++.|++.|++|||+++  |+||||||+||+++.++.        +|++
T Consensus        74 ~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~--iiH~dlkp~nili~~~~~~~~~~~~~~~l~  150 (258)
T cd05078          74 SIMVQEYVKFGSLDTYLKKN-KNLINISWKLEVAKQLAWALHFLEDKG--LTHGNVCAKNVLLIREEDRKTGNPPFIKLS  150 (258)
T ss_pred             cEEEEecCCCCcHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCccceEEEecccccccCCCceEEec
Confidence            68999999999999998643 346899999999999999999999998  999999999999987765        5999


Q ss_pred             cCCcchhhhhhhh-----hhcccccCCC-CCCCCCCcchhhHHHHHHHHhCC-CcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          448 DLSFWNEIAMAEM-----AATSKKLSSA-PSASLESNVYNFGVLLFEMVTGR-LPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       448 DfGla~~~~~~~~-----~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~-~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      |||++........     .+.+++.... ..++.++|||||||++|||++|. .||...  +....... .....     
T Consensus       151 d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~--~~~~~~~~-~~~~~-----  222 (258)
T cd05078         151 DPGISITVLPKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSAL--DSQKKLQF-YEDRH-----  222 (258)
T ss_pred             ccccccccCCchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhc--cHHHHHHH-HHccc-----
Confidence            9998875532221     1223333322 23577899999999999999985 565321  11111111 11111     


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL  561 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L  561 (592)
                            ..+.....++.+++.+||+.||++||+++++++.|
T Consensus       223 ------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l  257 (258)
T cd05078         223 ------QLPAPKWTELANLINQCMDYEPDFRPSFRAIIRDL  257 (258)
T ss_pred             ------cCCCCCcHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence                  11112234688999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=2.9e-34  Score=286.00  Aligned_cols=240  Identities=18%  Similarity=0.300  Sum_probs=182.8

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCC----chhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDW----PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~----~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +...||+|+||.||+|.. .++..+++|.+........    .....+.+.+|++++++++|+||+++++++...+  ..
T Consensus         4 ~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   81 (267)
T cd06628           4 KGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDAD--HL   81 (267)
T ss_pred             ccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCC--cc
Confidence            456899999999999985 4578899998765432211    1223467889999999999999999999998876  67


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|+||+++++|.+++..  ...+++.....++.+++.|++|||+.+  ++||||+|+||++++++.+||+|||+++...
T Consensus        82 ~lv~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~~l~~~l~~lH~~~--ivH~di~p~nil~~~~~~~~l~dfg~~~~~~  157 (267)
T cd06628          82 NIFLEYVPGGSVAALLNN--YGAFEETLVRNFVRQILKGLNYLHNRG--IIHRDIKGANILVDNKGGIKISDFGISKKLE  157 (267)
T ss_pred             EEEEEecCCCCHHHHHHh--ccCccHHHHHHHHHHHHHHHHHHHhcC--cccccCCHHHEEEcCCCCEEecccCCCcccc
Confidence            899999999999999863  346788899999999999999999998  9999999999999999999999999987664


Q ss_pred             hhh---------------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCcccc
Q 007711          457 MAE---------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  521 (592)
Q Consensus       457 ~~~---------------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (592)
                      ...               ..+.+++......++.++|||||||++|||+||+.||....  ...........       .
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~-------~  228 (267)
T cd06628         158 ANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCT--QLQAIFKIGEN-------A  228 (267)
T ss_pred             cccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCcc--HHHHHHHHhcc-------C
Confidence            211               01122222223335778999999999999999999995322  11111111111       1


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+   ..+...+..+.+++.+||+.||++||++.|+++
T Consensus       229 ~~---~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         229 SP---EIPSNISSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             CC---cCCcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence            11   122234467889999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.1e-33  Score=284.55  Aligned_cols=243  Identities=19%  Similarity=0.286  Sum_probs=185.4

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ..+.+.||+|+||.||++... ++..+++|.+.....    ....++|.+|+++++.++|+||+++++++....  ..++
T Consensus         7 ~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~l   80 (284)
T cd06620           7 LETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAK----SSVRKQILRELQIMHECRSPYIVSFYGAFLNEN--NICM   80 (284)
T ss_pred             HHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCc----chHHHHHHHHHHHHHHcCCCCcceEeeeEecCC--EEEE
Confidence            345578999999999999964 588899988754322    234578999999999999999999999998876  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      ||||+++|+|.++++.  ...+++.....++.+++.|+.|||+ .+  ++||||||+||++++++.++|+|||++.....
T Consensus        81 v~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~~~~--i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~  156 (284)
T cd06620          81 CMEFMDCGSLDRIYKK--GGPIPVEILGKIAVAVVEGLTYLYNVHR--IMHRDIKPSNILVNSRGQIKLCDFGVSGELIN  156 (284)
T ss_pred             EEecCCCCCHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHhcC--eeccCCCHHHEEECCCCcEEEccCCcccchhh
Confidence            9999999999988863  3468999999999999999999997 46  99999999999999999999999999875432


Q ss_pred             hh-------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCC---------hHHHHHHHhcCCCCCcccc
Q 007711          458 AE-------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS---------LEDWAADYLSGVQPLQQFV  521 (592)
Q Consensus       458 ~~-------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~---------~~~~~~~~~~~~~~~~~~~  521 (592)
                      ..       ..+.+++.......+.++|||||||++||++||+.||......         ..++........       
T Consensus       157 ~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  229 (284)
T cd06620         157 SIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEP-------  229 (284)
T ss_pred             hccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhcc-------
Confidence            11       1122233333334678999999999999999999999643321         112222222111       


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 007711          522 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL  561 (592)
Q Consensus       522 ~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L  561 (592)
                      .+...  ....+..+.+++.+||+.||++||++.|+++..
T Consensus       230 ~~~~~--~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~  267 (284)
T cd06620         230 PPRLP--SSDFPEDLRDFVDACLLKDPTERPTPQQLCAMP  267 (284)
T ss_pred             CCCCC--chhcCHHHHHHHHHHhcCCcccCcCHHHHhcCc
Confidence            01110  112445788999999999999999999998753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1.1e-33  Score=288.12  Aligned_cols=247  Identities=15%  Similarity=0.238  Sum_probs=181.7

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... ++..+++|.+.....    .....++.+|++++.+++||||+++++++...+  ..++|+
T Consensus         5 ~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   78 (308)
T cd06615           5 KLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIK----PAIRNQIIRELKVLHECNSPYIVGFYGAFYSDG--EISICM   78 (308)
T ss_pred             EEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccC----HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC--EEEEEe
Confidence            4578999999999999864 577788887653321    234567889999999999999999999998877  789999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      ||+++|+|.++++..  ..+++.....++.+++.||.|||+ ++  ++||||||+||++++++.+||+|||+++......
T Consensus        79 ey~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  154 (308)
T cd06615          79 EHMDGGSLDQVLKKA--GRIPENILGKISIAVLRGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM  154 (308)
T ss_pred             eccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhhCC--EEECCCChHHEEEecCCcEEEccCCCcccccccc
Confidence            999999999998633  568899999999999999999997 46  9999999999999999999999999987543211


Q ss_pred             -------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCcc-------------
Q 007711          460 -------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ-------------  519 (592)
Q Consensus       460 -------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~-------------  519 (592)
                             ..+.+++......++.++|||||||++|||+||+.||...+  ...+....-........             
T Consensus       155 ~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (308)
T cd06615         155 ANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPD--AKELEAMFGRPVSEGEAKESHRPVSGHPPD  232 (308)
T ss_pred             cccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcc--hhhHHHhhcCccccccccCCcccccCCCCC
Confidence                   12223333333446788999999999999999999985332  11111111100000000             


Q ss_pred             -------------ccCCCCCCCC-HHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          520 -------------FVDPTLSSFD-EEQLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       520 -------------~~~~~~~~~~-~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                                   +........+ ......+.+++.+||+.+|++||++.++++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  287 (308)
T cd06615         233 SPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKH  287 (308)
T ss_pred             ccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                         0000000000 1123468899999999999999999998764

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=7.6e-34  Score=298.18  Aligned_cols=240  Identities=15%  Similarity=0.239  Sum_probs=175.5

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+. .++..+|+|.+......  .....+.+.+|++++++++|+||+++++++...+  ..++||
T Consensus         5 ~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~--~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~--~~~lv~   80 (382)
T cd05625           5 KIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVL--LRNQVAHVKAERDILAEADNEWVVRLYYSFQDKD--NLYFVM   80 (382)
T ss_pred             EEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhh--hHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCC--EEEEEE
Confidence            457899999999999995 46788999988643221  1234567889999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh---
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  457 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~---  457 (592)
                      |||++|+|.+++..  ...++......++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.+..   
T Consensus        81 E~~~gg~L~~~l~~--~~~~~e~~~~~~~~qi~~al~~lH~~~--ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~  156 (382)
T cd05625          81 DYIPGGDMMSLLIR--MGIFPEDLARFYIAELTCAVESVHKMG--FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHD  156 (382)
T ss_pred             eCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEECCCCCEEEeECCCCcccccccc
Confidence            99999999998863  245788888899999999999999998  99999999999999999999999999753210   


Q ss_pred             -----------------------------------------------------hhhhhcccccCCCCCCCCCCcchhhHH
Q 007711          458 -----------------------------------------------------AEMAATSKKLSSAPSASLESNVYNFGV  484 (592)
Q Consensus       458 -----------------------------------------------------~~~~~~~~~~~~~~~~s~ksDVwSfGv  484 (592)
                                                                           +...+.+||......++.++|||||||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGv  236 (382)
T cd05625         157 SKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGV  236 (382)
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechH
Confidence                                                                 001112222222233688999999999


Q ss_pred             HHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCC---HHHHHH
Q 007711          485 LLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT---MRDIAA  559 (592)
Q Consensus       485 vl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs---~~ev~~  559 (592)
                      ++|||+||+.||...  ...+.............   .+...    ....++.+++.+++ .+|++|++   +.|++.
T Consensus       237 il~elltG~~Pf~~~--~~~~~~~~i~~~~~~~~---~p~~~----~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~  304 (382)
T cd05625         237 ILYEMLVGQPPFLAQ--TPLETQMKVINWQTSLH---IPPQA----KLSPEASDLIIKLC-RGPEDRLGKNGADEIKA  304 (382)
T ss_pred             HHHHHHhCCCCCCCC--CHHHHHHHHHccCCCcC---CCCcc----cCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhc
Confidence            999999999999533  22222222222111111   11111    12235667776654 59999997   777654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=2.3e-33  Score=279.21  Aligned_cols=242  Identities=19%  Similarity=0.298  Sum_probs=183.5

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCC-CchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKD-WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~-~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+.||+|+||.||+|...++..+|+|.+....... ........+.+|++++++++|+||++++++|....  ..++++
T Consensus         4 ~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~   81 (265)
T cd06631           4 KGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDN--TISIFM   81 (265)
T ss_pred             ccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCC--eEEEEE
Confidence            346799999999999998889999999876543211 11233456889999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++++|.+++...  ..+++.....++.+++.|++|||+.+  ++|+||+|+||++++++.+||+|||+++...... 
T Consensus        82 e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  157 (265)
T cd06631          82 EFVPGGSISSILNRF--GPLPEPVFCKYTKQILDGVAYLHNNC--VVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGL  157 (265)
T ss_pred             ecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCcCHHhEEECCCCeEEeccchhhHhhhhccc
Confidence            999999999998632  45788999999999999999999988  9999999999999999999999999987653211 


Q ss_pred             --------------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          460 --------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       460 --------------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                                    ..+.+++......++.++|||||||++|||+||+.||...+. .... ..........     +  
T Consensus       158 ~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~-~~~~-~~~~~~~~~~-----~--  228 (265)
T cd06631         158 HGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDR-LAAM-FYIGAHRGLM-----P--  228 (265)
T ss_pred             cccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCCh-HHHH-HHhhhccCCC-----C--
Confidence                          011222333333357889999999999999999999953221 1111 1111110111     1  


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       ..+.....++.+++.+||+.+|++||++.|++.
T Consensus       229 -~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         229 -RLPDSFSAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             -CCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence             112233457899999999999999999998874

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=4.1e-34  Score=299.63  Aligned_cols=240  Identities=17%  Similarity=0.257  Sum_probs=177.0

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+++. .+++.+|+|.+.......  ......+.+|++++++++|+||+++++++...+  ..++||
T Consensus         5 ~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~--~~~lv~   80 (376)
T cd05598           5 KIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLM--RNQAAHVKAERDILAEADNEWVVKLYYSFQDKD--NLYFVM   80 (376)
T ss_pred             EEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHh--hhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCC--EEEEEE
Confidence            457899999999999995 458899999885432111  123456889999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++..  ...++......++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||++..+.... 
T Consensus        81 E~~~~g~L~~~i~~--~~~~~~~~~~~~~~qi~~al~~lH~~~--ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~  156 (376)
T cd05598          81 DYIPGGDMMSLLIR--LGIFEEDLARFYIAELTCAIESVHKMG--FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHD  156 (376)
T ss_pred             eCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCCHHHEEECCCCCEEEEeCCCCcccccccc
Confidence            99999999999864  345788888889999999999999998  9999999999999999999999999975321000 


Q ss_pred             ---------------------------------------------hhhcccccCCCCC------CCCCCcchhhHHHHHH
Q 007711          460 ---------------------------------------------MAATSKKLSSAPS------ASLESNVYNFGVLLFE  488 (592)
Q Consensus       460 ---------------------------------------------~~~~~~~~~~~~~------~s~ksDVwSfGvvl~E  488 (592)
                                                                   ........+++||      ++.++|||||||++||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilye  236 (376)
T cd05598         157 SKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYE  236 (376)
T ss_pred             ccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeee
Confidence                                                         0000112234443      6789999999999999


Q ss_pred             HHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCC---CHHHHHH
Q 007711          489 MVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP---TMRDIAA  559 (592)
Q Consensus       489 l~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP---s~~ev~~  559 (592)
                      |+||+.||...  ...+............   ..+..    ......+.+++.+|+ .+|.+|+   ++.|+++
T Consensus       237 ll~G~~Pf~~~--~~~~~~~~i~~~~~~~---~~~~~----~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~  300 (376)
T cd05598         237 MLVGQPPFLAD--TPAETQLKVINWETTL---HIPSQ----AKLSREASDLILRLC-CGAEDRLGKNGADEIKA  300 (376)
T ss_pred             hhhCCCCCCCC--CHHHHHHHHhccCccc---cCCCC----CCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhC
Confidence            99999999533  2233322222111111   01111    122345677888876 5999999   8888875

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=6.9e-34  Score=286.68  Aligned_cols=255  Identities=19%  Similarity=0.283  Sum_probs=192.7

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      ...||+|+||.||.++- ..|..+|+|++++.....  ....+..+.|-++|...+++.||+|+-.+.+.+  ..|||||
T Consensus       146 Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~--~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~--~LYLiME  221 (550)
T KOG0605|consen  146 LKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLK--KNQVEHVRAERDILAEVDSPWVVKLYYSFQDKE--YLYLIME  221 (550)
T ss_pred             heeeccccceeEEEEEEccCCcEEeeecccHHHHHh--hhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCC--eeEEEEE
Confidence            37899999999999994 569999999997654332  345667889999999999999999999888877  8899999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh-
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-  460 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~-  460 (592)
                      |+|||++..+|.  ....|+......++.+++-|++-+|+.+  |+||||||.|+|||..|++||+|||++..+..... 
T Consensus       222 ylPGGD~mTLL~--~~~~L~e~~arfYiaE~vlAI~~iH~~g--yIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~  297 (550)
T KOG0605|consen  222 YLPGGDMMTLLM--RKDTLTEDWARFYIAETVLAIESIHQLG--YIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRI  297 (550)
T ss_pred             ecCCccHHHHHH--hcCcCchHHHHHHHHHHHHHHHHHHHcC--cccccCChhheeecCCCCEeeccccccchhhhhhhh
Confidence            999999999886  4467888888888899999999999999  99999999999999999999999999864421000 


Q ss_pred             --------------------hh-----------------------------cccccCCCCC------CCCCCcchhhHHH
Q 007711          461 --------------------AA-----------------------------TSKKLSSAPS------ASLESNVYNFGVL  485 (592)
Q Consensus       461 --------------------~~-----------------------------~~~~~~~~~~------~s~ksDVwSfGvv  485 (592)
                                          ..                             ..+.-+++||      |+..+|+||+|||
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~I  377 (550)
T KOG0605|consen  298 ESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCI  377 (550)
T ss_pred             hhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHH
Confidence                                00                             0011234454      6788999999999


Q ss_pred             HHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCC---HHHHHHHHH
Q 007711          486 LFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT---MRDIAAILR  562 (592)
Q Consensus       486 l~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs---~~ev~~~L~  562 (592)
                      +|||+.|.+||..+  .+.+..+.++.-..-+.   -|.    ......++.++|.+|+. ||++|.-   ++||     
T Consensus       378 myEmLvGyPPF~s~--tp~~T~rkI~nwr~~l~---fP~----~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EI-----  442 (550)
T KOG0605|consen  378 MYEMLVGYPPFCSE--TPQETYRKIVNWRETLK---FPE----EVDLSDEAKDLITRLLC-DPENRLGSKGAEEI-----  442 (550)
T ss_pred             HHHHHhCCCCCCCC--CHHHHHHHHHHHhhhcc---CCC----cCcccHHHHHHHHHHhc-CHHHhcCcccHHHH-----
Confidence            99999999999533  33333333222111111   111    11223678999999998 9999986   4443     


Q ss_pred             hhhCCCCCCCCCccCcccHHHHHhhh
Q 007711          563 EITGITPDGAIPKLSPLWWAEIEILS  588 (592)
Q Consensus       563 ~i~~~~~~~~~p~~~~~~~~~~~~~~  588 (592)
                              -..|.+..+.|+++..+.
T Consensus       443 --------K~HPfF~~v~W~~l~~~~  460 (550)
T KOG0605|consen  443 --------KKHPFFKGVDWDHLREMP  460 (550)
T ss_pred             --------hcCCccccCCcchhhcCC
Confidence                    357888888888876543

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=2.6e-33  Score=281.56  Aligned_cols=238  Identities=17%  Similarity=0.204  Sum_probs=179.7

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... ++..+++|.+....     ....+.|.+|+++++.++|+||+++++++...+  ..++|+
T Consensus         9 i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~--~~~~v~   81 (282)
T cd06643           9 IIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKS-----EEELEDYMVEIDILASCDHPNIVKLLDAFYYEN--NLWILI   81 (282)
T ss_pred             HHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCC-----HHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCC--EEEEEE
Confidence            3467999999999999975 46677777764322     233567889999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|..++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++...... 
T Consensus        82 e~~~~~~l~~~~~~-~~~~l~~~~~~~~~~qi~~~L~~LH~~~--i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~  158 (282)
T cd06643          82 EFCAGGAVDAVMLE-LERPLTEPQIRVVCKQTLEALNYLHENK--IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ  158 (282)
T ss_pred             EecCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCcccEEEccCCCEEEcccccccccccccc
Confidence            99999999887753 2346899999999999999999999998  9999999999999999999999999986543211 


Q ss_pred             --------hhhcccccC-----CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          460 --------MAATSKKLS-----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       460 --------~~~~~~~~~-----~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                              ..+.+++..     ....++.++|||||||++|||++|+.||...  ...+...........  ...     
T Consensus       159 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~--~~~~~~~~~~~~~~~--~~~-----  229 (282)
T cd06643         159 RRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHEL--NPMRVLLKIAKSEPP--TLA-----  229 (282)
T ss_pred             ccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCcccc--CHHHHHHHHhhcCCC--CCC-----
Confidence                    112223221     1122466899999999999999999998432  222222222222111  111     


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       .+...+.++.+++.+||+.||.+||++.++++
T Consensus       230 -~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  261 (282)
T cd06643         230 -QPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQ  261 (282)
T ss_pred             -CccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence             11223357899999999999999999998864

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=2e-33  Score=278.13  Aligned_cols=241  Identities=22%  Similarity=0.321  Sum_probs=186.1

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||++... +++.+++|.+......   ....+.+.+|++++++++|+|++++++.+...+. ..+++
T Consensus         3 ~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~-~~~lv   78 (257)
T cd08223           3 CFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNAS---RRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDG-LLYIV   78 (257)
T ss_pred             eEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcC---HHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCC-EEEEE
Confidence            35578999999999999964 5788999987643321   2345678899999999999999999988754332 46899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++++|.+++.......+++.++..++.+++.|++|||+.+  ++||||||+||+++.++.++|+|||+++......
T Consensus        79 ~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~--i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~  156 (257)
T cd08223          79 MGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKH--ILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQC  156 (257)
T ss_pred             ecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCchhEEEecCCcEEEecccceEEecccC
Confidence            99999999999987655566899999999999999999999998  9999999999999999999999999987653211


Q ss_pred             ---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 ---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 ---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                               ..+.+++......++.++||||||+++||++||+.||..  .+...+......+.  .        ...+.
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~--~~~~~~~~~~~~~~--~--------~~~~~  224 (257)
T cd08223         157 DMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNA--KDMNSLVYRIIEGK--L--------PPMPK  224 (257)
T ss_pred             CccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCC--CCHHHHHHHHHhcC--C--------CCCcc
Confidence                     112233333333467899999999999999999999953  23334333333321  1        11122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .....+.+++.+||+.+|++||++.++++
T Consensus       225 ~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  253 (257)
T cd08223         225 DYSPELGELIATMLSKRPEKRPSVKSILR  253 (257)
T ss_pred             ccCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            34457899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=9.5e-34  Score=295.40  Aligned_cols=243  Identities=21%  Similarity=0.253  Sum_probs=181.1

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.+.||+|+||.||+++.. ++..+|+|.+.......  ....+.+.+|+.+++.++||||+++++++....  ..++
T Consensus        45 y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~--~~~l  120 (370)
T cd05621          45 YDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIK--RSDSAFFWEERDIMAFANSPWVVQLFCAFQDDK--YLYM  120 (370)
T ss_pred             CeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC--EEEE
Confidence            334578999999999999965 57889999886432211  223456889999999999999999999998776  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||||+++|+|.+++..   ..++......++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++.....
T Consensus       121 v~Ey~~gg~L~~~l~~---~~~~~~~~~~~~~qil~aL~~LH~~~--IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~  195 (370)
T cd05621         121 VMEYMPGGDLVNLMSN---YDVPEKWAKFYTAEVVLALDAIHSMG--LIHRDVKPDNMLLDKHGHLKLADFGTCMKMDET  195 (370)
T ss_pred             EEcCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHEEECCCCCEEEEecccceecccC
Confidence            9999999999998853   24788889999999999999999998  999999999999999999999999998865322


Q ss_pred             hh----hhcccccCCCCC----------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          459 EM----AATSKKLSSAPS----------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       459 ~~----~~~~~~~~~~~~----------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ..    ....+..+++||          ++.++|||||||++|||+||+.||...  +................   -+.
T Consensus       196 ~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~--~~~~~~~~i~~~~~~~~---~p~  270 (370)
T cd05621         196 GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYAD--SLVGTYSKIMDHKNSLN---FPE  270 (370)
T ss_pred             CceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCC--CHHHHHHHHHhCCcccC---CCC
Confidence            11    111122344443          578999999999999999999999532  33333333332211111   010


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCC--CCCHHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEK--RPTMRDIAAI  560 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~--RPs~~ev~~~  560 (592)
                          .......+.+++.+|++.++.+  |+++.|+++.
T Consensus       271 ----~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~h  304 (370)
T cd05621         271 ----DVEISKHAKNLICAFLTDREVRLGRNGVEEIKQH  304 (370)
T ss_pred             ----cccCCHHHHHHHHHHccCchhccCCCCHHHHhcC
Confidence                1122346788999999865544  8899998774

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.4e-33  Score=279.16  Aligned_cols=241  Identities=21%  Similarity=0.312  Sum_probs=185.9

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+.||+|+||.||+|... ++..+++|.+.............+.|.+|++++++++|+||+++++++....  ..++++
T Consensus         4 ~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~lv~   81 (258)
T cd06632           4 KGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREED--NLYIFL   81 (258)
T ss_pred             ccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCC--eEEEEE
Confidence            3467999999999999976 7889999988765433333445678999999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++++|.+++..  ...+++.....++.+++.|++|||+.+  ++|+||+|+||+++.++.+||+|||++....... 
T Consensus        82 e~~~~~~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~  157 (258)
T cd06632          82 ELVPGGSLAKLLKK--YGSFPEPVIRLYTRQILLGLEYLHDRN--TVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSF  157 (258)
T ss_pred             EecCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEEccCccceecccccc
Confidence            99999999999863  245889999999999999999999998  9999999999999999999999999987653221 


Q ss_pred             -------hhhcccccCCCCC-CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 -------MAATSKKLSSAPS-ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 -------~~~~~~~~~~~~~-~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                             ..+.+++...... ++.++|||||||++|||++|+.||....  ..+........ ...        ...+..
T Consensus       158 ~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~--~~~~~~~~~~~-~~~--------~~~~~~  226 (258)
T cd06632         158 AKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE--GVAAVFKIGRS-KEL--------PPIPDH  226 (258)
T ss_pred             ccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc--HHHHHHHHHhc-ccC--------CCcCCC
Confidence                   1112233222222 6788999999999999999999995322  22222111110 011        111222


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+.+++.+||+.+|++||++.+++.
T Consensus       227 ~~~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         227 LSDEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             cCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence            3456889999999999999999999874

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=9.3e-34  Score=285.15  Aligned_cols=248  Identities=17%  Similarity=0.226  Sum_probs=180.1

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. ++..+++|.+......   ......+.+|+.++++++|+||+++++++..+.  ..++|+
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   78 (285)
T cd07861           4 KIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEE---EGVPSTAIREISLLKELQHPNIVCLQDVLMQES--RLYLIF   78 (285)
T ss_pred             EeeEecccCceEEEEEEECCCCcEEEEEEecccccc---CCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCC--eEEEEE
Confidence            3467999999999999964 6889999987643322   123456888999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      ||++ ++|.+++.... ...+++..+..++.|++.||+|||+.+  ++||||||+||++++++.+||+|||+++......
T Consensus        79 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  155 (285)
T cd07861          79 EFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRR--VLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPV  155 (285)
T ss_pred             ecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCC--eeecCCCHHHEEEcCCCcEEECcccceeecCCCc
Confidence            9997 68888875432 356899999999999999999999998  9999999999999999999999999987543211


Q ss_pred             ---------hhhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC--------------
Q 007711          460 ---------MAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ--------------  515 (592)
Q Consensus       460 ---------~~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~--------------  515 (592)
                               ..+.+|+.. ....++.++|||||||++|||+||+.||.....  .+..........              
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (285)
T cd07861         156 RVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSE--IDQLFRIFRILGTPTEDVWPGVTSLP  233 (285)
T ss_pred             ccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHHHhCCCChhhhhcchhhH
Confidence                     112223322 122357789999999999999999999953321  111111110000              


Q ss_pred             CCc----cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          516 PLQ----QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       516 ~~~----~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...    ................++.+++.+||+.||++|||+.+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         234 DYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             HHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence            000    00000000011123456789999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-33  Score=292.67  Aligned_cols=255  Identities=18%  Similarity=0.245  Sum_probs=196.7

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      |.++||+|.||+|+.+.++ ++..+|||++++...-.  ....+..+.|..++.-. +||.++.|++++...+  ..+.|
T Consensus       372 ~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~--~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~--~l~fv  447 (694)
T KOG0694|consen  372 LLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQ--RDEVESLMCEKRIFELANRHPFLVNLFSCFQTKE--HLFFV  447 (694)
T ss_pred             EEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceec--cccHHHHHHHHHHHHHhccCCeEeecccccccCC--eEEEE
Confidence            4589999999999999975 57899999997654332  33456677787777666 6999999999998877  78999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh-h
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-A  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~-~  458 (592)
                      |||+.+|++..+.+   ...++..+..-+|..|+-||.|||+++  ||+||||-.|||+|.+|.+||+|||+++.... +
T Consensus       448 mey~~Ggdm~~~~~---~~~F~e~rarfyaAev~l~L~fLH~~~--IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g  522 (694)
T KOG0694|consen  448 MEYVAGGDLMHHIH---TDVFSEPRARFYAAEVVLGLQFLHENG--IIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQG  522 (694)
T ss_pred             EEecCCCcEEEEEe---cccccHHHHHHHHHHHHHHHHHHHhcC--ceeeecchhheEEcccCcEEecccccccccCCCC
Confidence            99999999665554   457899999999999999999999999  99999999999999999999999999997541 1


Q ss_pred             h--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          459 E--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       459 ~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                      .        ..+.+|+......|+..+|+|||||+||||+.|..||.+  .+.++....++.+..           .+|.
T Consensus       523 ~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~g--ddEee~FdsI~~d~~-----------~yP~  589 (694)
T KOG0694|consen  523 DRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPG--DDEEEVFDSIVNDEV-----------RYPR  589 (694)
T ss_pred             CccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCC--CCHHHHHHHHhcCCC-----------CCCC
Confidence            1        112233344444589999999999999999999999943  334455555544321           1344


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCCCCccCcccHHHHHh
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEI  586 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~~p~~~~~~~~~~~~  586 (592)
                      ..+.+..++|.+.++++|++|.-+.+        .....-...|.+....|++++-
T Consensus       590 ~ls~ea~~il~~ll~k~p~kRLG~~e--------~d~~~i~~hpFFr~i~w~~L~~  637 (694)
T KOG0694|consen  590 FLSKEAIAIMRRLLRKNPEKRLGSGE--------RDAEDIKKHPFFRSIDWDDLLN  637 (694)
T ss_pred             cccHHHHHHHHHHhccCcccccCCCC--------CCchhhhhCCccccCCHHHHhh
Confidence            45568899999999999999987620        0111114678888888888764

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=1.6e-33  Score=282.02  Aligned_cols=241  Identities=24%  Similarity=0.432  Sum_probs=183.4

Q ss_pred             hcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          303 SNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      ...||+|+||.||+|+.+      +...+++|.+.....    ....++|.+|++++++++|+||+++++++....  ..
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~   83 (275)
T cd05046          10 ITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD----ENLQSEFRRELDMFRKLSHKNVVRLLGLCREAE--PH   83 (275)
T ss_pred             eeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccc----hHHHHHHHHHHHHHHhcCCcceeeeEEEECCCC--cc
Confidence            467999999999999964      235677776643221    224567999999999999999999999998766  56


Q ss_pred             EEEEeeCCCCCchhhccccCC-------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecC
Q 007711          377 MMVFEYAPNGTLFEHIHIKES-------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  449 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~-------~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~Df  449 (592)
                      ++||||+++|+|.+++.....       ..+++..+..++.+++.||+|||+++  ++||||||+||++++++.+|++||
T Consensus        84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~--i~H~dlkp~Nili~~~~~~~l~~~  161 (275)
T cd05046          84 YMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNAR--FVHRDLAARNCLVSSQREVKVSLL  161 (275)
T ss_pred             eEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcC--cccCcCccceEEEeCCCcEEEccc
Confidence            999999999999999864331       26899999999999999999999998  999999999999999999999999


Q ss_pred             Ccchhhhhhh----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCc
Q 007711          450 SFWNEIAMAE----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQ  518 (592)
Q Consensus       450 Gla~~~~~~~----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~  518 (592)
                      |+++......          ..+.+++.......+.++|||||||++|||++ |..||..  ....+.......+.... 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~--~~~~~~~~~~~~~~~~~-  238 (275)
T cd05046         162 SLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYG--LSDEEVLNRLQAGKLEL-  238 (275)
T ss_pred             ccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccc--cchHHHHHHHHcCCcCC-
Confidence            9986542211          11233333333346788999999999999999 8889842  22223332222111111 


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       519 ~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                              ..+...+..+.+++.+||+.+|++||++.|++..|.
T Consensus       239 --------~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         239 --------PVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             --------CCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence                    011223457999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=2.2e-33  Score=277.57  Aligned_cols=237  Identities=21%  Similarity=0.276  Sum_probs=183.4

Q ss_pred             hhhcccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||+|+||.||+|.+.+ +..+++|.+....       ..++|.+|++++++++|+||++++|++....  ..+++
T Consensus         6 ~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~-------~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--~~~l~   76 (256)
T cd06612           6 DILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEE-------DLQEIIKEISILKQCDSPYIVKYYGSYFKNT--DLWIV   76 (256)
T ss_pred             hhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHH-------HHHHHHHHHHHHHhCCCCcEeeeeeeeecCC--cEEEE
Confidence            345779999999999999765 7889999875332       1568999999999999999999999998876  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||+++++|.+++.. ....++|.....++.+++.|+.|||+.+  ++||||+|+||++++++.+||+|||++.......
T Consensus        77 ~e~~~~~~L~~~l~~-~~~~l~~~~~~~~~~~l~~~l~~lh~~~--i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~  153 (256)
T cd06612          77 MEYCGAGSVSDIMKI-TNKTLTEEEIAAILYQTLKGLEYLHSNK--KIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTM  153 (256)
T ss_pred             EecCCCCcHHHHHHh-CccCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCcceEEECCCCcEEEcccccchhcccCc
Confidence            999999999999863 3356899999999999999999999998  9999999999999999999999999988654322


Q ss_pred             ---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 ---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 ---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                               ..+.+++......++.++|||||||++|||+||+.||.....  .+........       ..+. ...+.
T Consensus       154 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~--~~~~~~~~~~-------~~~~-~~~~~  223 (256)
T cd06612         154 AKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHP--MRAIFMIPNK-------PPPT-LSDPE  223 (256)
T ss_pred             cccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcch--hhhhhhhccC-------CCCC-CCchh
Confidence                     112223333333467899999999999999999999953221  1111110000       0000 11122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .....+.+++.+||+.+|++||++.|+++
T Consensus       224 ~~~~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         224 KWSPEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             hcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence            33457899999999999999999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1.1e-33  Score=285.27  Aligned_cols=250  Identities=18%  Similarity=0.216  Sum_probs=177.8

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC---CCCceeeeeEEEecCC---Cc
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV---NHKNFVNLIGFCEEEE---PF  374 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l---~H~niv~l~g~~~~~~---~~  374 (592)
                      +.+.||+|+||.||+|... +++.+|+|.+.......   .....+.+|++++.++   +||||+++++++....   ..
T Consensus         4 ~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~---~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           4 PVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNED---GLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             EeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCC---CCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            4577999999999999864 68899999886543222   1223455677766655   7999999999886432   12


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..++|+||++ ++|.+++.......+++..+..++.|++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.
T Consensus        81 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dikp~Nili~~~~~~kl~dfg~~~~  157 (288)
T cd07863          81 KVTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANC--IVHRDLKPENILVTSGGQVKLADFGLARI  157 (288)
T ss_pred             eEEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEECCCCCEEECccCcccc
Confidence            4689999997 58888886554556899999999999999999999998  99999999999999999999999999876


Q ss_pred             hhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCC-----CCCc---
Q 007711          455 IAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV-----QPLQ---  518 (592)
Q Consensus       455 ~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~-----~~~~---  518 (592)
                      .....        ..+.+||......++.++|||||||++|||++|+.||.....  .+.........     ..+.   
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  235 (288)
T cd07863         158 YSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSE--ADQLGKIFDLIGLPPEDDWPRDV  235 (288)
T ss_pred             ccCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCH--HHHHHHHHHHhCCCChhhCcccc
Confidence            54221        112333333333468899999999999999999999853321  11111111000     0000   


Q ss_pred             ----cccCCCC----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 ----QFVDPTL----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 ----~~~~~~~----~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          ....+..    ........+.+.+++.+|++.||++|||+.|++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         236 TLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             cccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence                0000000    0111233457889999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=2.2e-33  Score=281.43  Aligned_cols=236  Identities=16%  Similarity=0.243  Sum_probs=184.2

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+.||.|+||.||+|... ++..+|+|.+.....    ......|.+|++++++++|+||+++++++....  ..++||
T Consensus         8 ~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   81 (277)
T cd06640           8 KLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEA----EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGT--KLWIIM   81 (277)
T ss_pred             hhhhcccCCCeEEEEEEEccCCEEEEEEEEecccc----HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC--EEEEEE
Confidence            3467999999999999964 578899998764321    233567899999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++|+|.+++..   ..+++.....++.+++.|++|||+.+  ++|+||+|+||+++.++.++|+|||++........
T Consensus        82 e~~~~~~L~~~i~~---~~l~~~~~~~~~~~l~~~l~~lh~~~--ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~  156 (277)
T cd06640          82 EYLGGGSALDLLRA---GPFDEFQIATMLKEILKGLDYLHSEK--KIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI  156 (277)
T ss_pred             ecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCC--ccCcCCChhhEEEcCCCCEEEcccccceeccCCcc
Confidence            99999999998863   35788899999999999999999998  99999999999999999999999999876532211


Q ss_pred             ---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          461 ---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       461 ---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                               .+.+++.......+.++|||||||++|||+||+.||....  ..........          .........
T Consensus       157 ~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~--~~~~~~~~~~----------~~~~~~~~~  224 (277)
T cd06640         157 KRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMH--PMRVLFLIPK----------NNPPTLTGE  224 (277)
T ss_pred             ccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcC--hHhHhhhhhc----------CCCCCCchh
Confidence                     1223333333346789999999999999999999995322  1111111100          011123445


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      .+..+.+++.+||+.+|++||++.+++..
T Consensus       225 ~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         225 FSKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             hhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence            56789999999999999999999999753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-34  Score=277.36  Aligned_cols=252  Identities=19%  Similarity=0.238  Sum_probs=187.0

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecC---CCcceEEE
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE---EPFTRMMV  379 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~---~~~~~~lv  379 (592)
                      +.||+|+||.|+++.. .+|..||+|++...-..   ....++-.+|+++++.++|+||+.+......+   .....|+|
T Consensus        28 ~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~---~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV  104 (359)
T KOG0660|consen   28 EPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFEN---QIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLV  104 (359)
T ss_pred             ccccCcceeeEEEEEEcCCCCEeehhhhhhhhhc---hHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEe
Confidence            5699999999999985 56899999988633222   23456678899999999999999999988651   22257999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh--
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  457 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~--  457 (592)
                      +|+| .-+|...++.  .+.++.....-+..|+.+||.|+|+.+  ++||||||+|++++.+...||+|||+||....  
T Consensus       105 ~elM-etDL~~iik~--~~~L~d~H~q~f~YQiLrgLKyiHSAn--ViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~  179 (359)
T KOG0660|consen  105 FELM-ETDLHQIIKS--QQDLTDDHAQYFLYQILRGLKYIHSAN--VIHRDLKPSNLLLNADCDLKICDFGLARYLDKFF  179 (359)
T ss_pred             hhHH-hhHHHHHHHc--CccccHHHHHHHHHHHHHhcchhhccc--ccccccchhheeeccCCCEEeccccceeeccccC
Confidence            9999 4589888863  345888889999999999999999999  99999999999999999999999999998842  


Q ss_pred             --hh-hhhcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCC------------ChHHH---------
Q 007711          458 --AE-MAATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNG------------SLEDW---------  506 (592)
Q Consensus       458 --~~-~~~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~------------~~~~~---------  506 (592)
                        .. ..+.++.++++||       |+...||||.|||+.||++|+.-|.+.+.            .+.+.         
T Consensus       180 ~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~  259 (359)
T KOG0660|consen  180 EDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEK  259 (359)
T ss_pred             cccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHH
Confidence              22 3345566777776       79999999999999999999998853321            00000         


Q ss_pred             HHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHhhhC
Q 007711          507 AADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREITG  566 (592)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~--~L~~i~~  566 (592)
                      ++.+++...   ..-.......-+.......+++.+++..||.+|+|++|.++  .|...-.
T Consensus       260 ar~yi~slp---~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hd  318 (359)
T KOG0660|consen  260 ARPYIKSLP---QIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHD  318 (359)
T ss_pred             HHHHHHhCC---CCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcC
Confidence            111221110   00000001111133456889999999999999999999876  3444433

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=3.3e-33  Score=278.71  Aligned_cols=247  Identities=19%  Similarity=0.306  Sum_probs=184.7

Q ss_pred             hhcccCcCCCeEEEEEEeCC--CcEEEEEEeeecccCC-----CchhHHHHHHHHHHHHhc-CCCCceeeeeEEEecCCC
Q 007711          302 FSNVIGSSPIGTVYKGTLSN--GVEIAVASVSVASAKD-----WPKNLEVQFRKKIDTLSK-VNHKNFVNLIGFCEEEEP  373 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~--~~~vavk~~~~~~~~~-----~~~~~~~~f~~e~~~l~~-l~H~niv~l~g~~~~~~~  373 (592)
                      +.+.||+|+||.||+|....  +..+++|.+.......     .......++.+|+.++.+ ++|+||+++++++...+ 
T Consensus         4 ~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~-   82 (269)
T cd08528           4 VLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLEND-   82 (269)
T ss_pred             hhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccCC-
Confidence            45679999999999999765  6789999876433211     112344567788888875 79999999999998877 


Q ss_pred             cceEEEEeeCCCCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCCceEEecCC
Q 007711          374 FTRMMVFEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLS  450 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~~~ki~DfG  450 (592)
                       ..+++|||+++++|.+++..  .....+++..+.+++.+++.|+.|||+ .+  ++|+||+|+||+++.++.+||+|||
T Consensus        83 -~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~--i~H~dl~~~nil~~~~~~~~l~dfg  159 (269)
T cd08528          83 -RLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKR--IVHRDLTPNNIMLGEDDKVTITDFG  159 (269)
T ss_pred             -eEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCc--eeecCCCHHHEEECCCCcEEEeccc
Confidence             67999999999999988753  234568899999999999999999996 56  9999999999999999999999999


Q ss_pred             cchhhhhhhh--------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccC
Q 007711          451 FWNEIAMAEM--------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD  522 (592)
Q Consensus       451 la~~~~~~~~--------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (592)
                      ++........        .+.+++......++.++||||||+++|||++|+.||..  ...............  .    
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~--~~~~~~~~~~~~~~~--~----  231 (269)
T cd08528         160 LAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYS--TNMLSLATKIVEAVY--E----  231 (269)
T ss_pred             ceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccc--cCHHHHHHHHhhccC--C----
Confidence            9876543211        11223322333367899999999999999999999942  222222222222111  1    


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       523 ~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      +..   .......+.+++.+||+.||++||++.|+..++++
T Consensus       232 ~~~---~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~~  269 (269)
T cd08528         232 PLP---EGMYSEDVTDVITSCLTPDAEARPDIIQVSAMISD  269 (269)
T ss_pred             cCC---cccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhcC
Confidence            100   11223568899999999999999999999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=1.2e-33  Score=289.69  Aligned_cols=233  Identities=16%  Similarity=0.184  Sum_probs=177.7

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ++.+.||+|+||.||++... +|..||+|++.......  ....+.+..|..++..+. |++|+++++++...+  ..++
T Consensus         3 ~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~--~~~l   78 (323)
T cd05615           3 NFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQ--DDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVD--RLYF   78 (323)
T ss_pred             eEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhccCCCchhheeeEEecCC--EEEE
Confidence            45678999999999999864 68899999886432211  223456778888988885 567888888887766  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++.....
T Consensus        79 v~Ey~~~g~L~~~i~~--~~~l~~~~~~~i~~qi~~al~~lH~~~--ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~  154 (323)
T cd05615          79 VMEYVNGGDLMYHIQQ--VGKFKEPQAVFYAAEISVGLFFLHRRG--IIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVD  154 (323)
T ss_pred             EEcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHeEECCCCCEEEeccccccccCCC
Confidence            9999999999988853  346899999999999999999999998  999999999999999999999999998754211


Q ss_pred             ---------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          459 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       459 ---------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                               ...+.+|+......++.++|||||||++|||+||+.||..  ................           ++
T Consensus       155 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~--~~~~~~~~~i~~~~~~-----------~p  221 (323)
T cd05615         155 GVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDG--EDEDELFQSIMEHNVS-----------YP  221 (323)
T ss_pred             CccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCC-----------CC
Confidence                     1122333333334478899999999999999999999953  2333333333322111           11


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTM  554 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~  554 (592)
                      ......+.+++.+||+.+|.+|++.
T Consensus       222 ~~~~~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         222 KSLSKEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             ccCCHHHHHHHHHHcccCHhhCCCC
Confidence            2233568899999999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=2.3e-33  Score=281.56  Aligned_cols=235  Identities=20%  Similarity=0.286  Sum_probs=179.2

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|.. .++..+|+|.+....    .....++|.+|++++.+++||||+++++++...+  ..++|+
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   78 (279)
T cd06619           5 YQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDI----TVELQKQIMSELEILYKCDSPYIIGFYGAFFVEN--RISICT   78 (279)
T ss_pred             heeeeccCCCeEEEEEEEcCCCcEEEEEEEecCC----ChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECC--EEEEEE
Confidence            457899999999999985 568889999875432    1234567999999999999999999999998877  678999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|..+.      .+++.....++.+++.|++|||+.+  ++|+||||+||+++.++.+||+|||++....... 
T Consensus        79 e~~~~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~  150 (279)
T cd06619          79 EFMDGGSLDVYR------KIPEHVLGRIAVAVVKGLTYLWSLK--ILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIA  150 (279)
T ss_pred             ecCCCCChHHhh------cCCHHHHHHHHHHHHHHHHHHHHCC--EeeCCCCHHHEEECCCCCEEEeeCCcceecccccc
Confidence            999999996542      3678888899999999999999998  9999999999999999999999999987653221 


Q ss_pred             ------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCC-----hHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          460 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-----LEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       460 ------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                            ..+.+++......++.++||||||+++|||+||+.||......     ...+....... .      .+...  
T Consensus       151 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~--  221 (279)
T cd06619         151 KTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDE-D------PPVLP--  221 (279)
T ss_pred             cCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhcc-C------CCCCC--
Confidence                  1223344443444788999999999999999999999532211     11111111111 0      01110  


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ......++.+++.+||+.+|++||+++|+++
T Consensus       222 ~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~  252 (279)
T cd06619         222 VGQFSEKFVHFITQCMRKQPKERPAPENLMD  252 (279)
T ss_pred             CCcCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence            1112346889999999999999999999875

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=4.3e-33  Score=277.36  Aligned_cols=242  Identities=15%  Similarity=0.194  Sum_probs=181.2

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|.. .++..|++|.+.............+.+.+|++++++++|+||+++++++.+......++++
T Consensus         6 ~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~   85 (265)
T cd06652           6 LGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIFM   85 (265)
T ss_pred             EeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEEEEE
Confidence            357899999999999986 4588999998764332222233456788999999999999999999988764333568999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh--
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~--  458 (592)
                      ||+++|+|.+++...  ..+++....+++.+++.||+|||+++  ++|+||||+||+++.++.+||+|||+++.....  
T Consensus        86 e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~--i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~  161 (265)
T cd06652          86 EHMPGGSIKDQLKSY--GALTENVTRKYTRQILEGVSYLHSNM--IVHRDIKGANILRDSVGNVKLGDFGASKRLQTICL  161 (265)
T ss_pred             EecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEecCCCCEEECcCccccccccccc
Confidence            999999999988632  45788889999999999999999998  999999999999999999999999998754311  


Q ss_pred             ----------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          459 ----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       459 ----------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                                ...+.+++......++.++|||||||++|||++|+.||...  ............         +.....
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~--~~~~~~~~~~~~---------~~~~~~  230 (265)
T cd06652         162 SGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEF--EAMAAIFKIATQ---------PTNPVL  230 (265)
T ss_pred             cccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCcc--chHHHHHHHhcC---------CCCCCC
Confidence                      01122333333334678899999999999999999999432  111111111111         011112


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      +......+.+++.+||. +|++||+++|+++
T Consensus       231 ~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~  260 (265)
T cd06652         231 PPHVSDHCRDFLKRIFV-EAKLRPSADELLR  260 (265)
T ss_pred             chhhCHHHHHHHHHHhc-ChhhCCCHHHHhc
Confidence            33444578889999994 8999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=9.8e-34  Score=288.64  Aligned_cols=246  Identities=15%  Similarity=0.211  Sum_probs=178.9

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. ++..+|+|.+.......    ....+.+|++++++++|+||+++++++...+  ..++||
T Consensus        10 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   83 (309)
T cd07872          10 KLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEG----APCTAIREVSLLKDLKHANIVTLHDIVHTDK--SLTLVF   83 (309)
T ss_pred             EEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCC----cchhHHHHHHHHHhCCCCCcceEEEEEeeCC--eEEEEE
Confidence            4578999999999999864 57789999886543221    2345778999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++ +|.+++.. ....+++.....++.+++.||+|||+.+  |+||||||+||++++++.+||+|||+++...... 
T Consensus        84 e~~~~-~l~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~lH~~~--ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~  159 (309)
T cd07872          84 EYLDK-DLKQYMDD-CGNIMSMHNVKIFLYQILRGLAYCHRRK--VLHRDLKPQNLLINERGELKLADFGLARAKSVPTK  159 (309)
T ss_pred             eCCCC-CHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEECCCCCEEECccccceecCCCcc
Confidence            99975 88877753 2345788999999999999999999998  9999999999999999999999999987543211 


Q ss_pred             --------hhhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC--------------C
Q 007711          460 --------MAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ--------------P  516 (592)
Q Consensus       460 --------~~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~--------------~  516 (592)
                              ..+.+++.. ....++.++|||||||++|||+||+.||....  ..+..........              .
T Consensus       160 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
T cd07872         160 TYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGST--VEDELHLIFRLLGTPTEETWPGISSNDE  237 (309)
T ss_pred             ccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCCHHHHhhhcchhh
Confidence                    112223322 22336778999999999999999999995332  1111111111000              0


Q ss_pred             CccccCCCCC-----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          517 LQQFVDPTLS-----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       517 ~~~~~~~~~~-----~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ......+...     ........++.+++.+|++.||.+|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  285 (309)
T cd07872         238 FKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMK  285 (309)
T ss_pred             hhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence            0000000000     001123456889999999999999999999986

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1e-33  Score=296.78  Aligned_cols=242  Identities=13%  Similarity=0.130  Sum_probs=175.5

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.+.||+|+||.||++.. ..++.||+|...           ...+.+|++++++++||||+++++++....  ..++
T Consensus        94 y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~-----------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~l  160 (391)
T PHA03212         94 FSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ-----------RGGTATEAHILRAINHPSIIQLKGTFTYNK--FTCL  160 (391)
T ss_pred             cEEEEEEcCCCCeEEEEEEECCCCCEEEEechh-----------hhhhHHHHHHHHhCCCCCCCCEeEEEEECC--eeEE
Confidence            33457899999999999985 467889998532           234678999999999999999999998776  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |+||+. ++|.+++..  ...+++...+.|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....
T Consensus       161 v~e~~~-~~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~ylH~~~--IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~  235 (391)
T PHA03212        161 ILPRYK-TDLYCYLAA--KRNIAICDILAIERSVLRAIQYLHENR--IIHRDIKAENIFINHPGDVCLGDFGAACFPVDI  235 (391)
T ss_pred             EEecCC-CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCChHhEEEcCCCCEEEEeCCcccccccc
Confidence            999995 788888753  346889999999999999999999998  999999999999999999999999998653211


Q ss_pred             ----------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC-----ChHHHHHHHhcCCCCCc-----
Q 007711          459 ----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-----SLEDWAADYLSGVQPLQ-----  518 (592)
Q Consensus       459 ----------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-----~~~~~~~~~~~~~~~~~-----  518 (592)
                                ...+.+++......++.++|||||||++|||+||+.||.....     +................     
T Consensus       236 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~  315 (391)
T PHA03212        236 NANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPI  315 (391)
T ss_pred             cccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCc
Confidence                      1112233333333468899999999999999999988743211     11111111110000000     


Q ss_pred             -------c---------ccCCCCCCCC---HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 -------Q---------FVDPTLSSFD---EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 -------~---------~~~~~~~~~~---~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                             .         ...+......   ...+..+.+++.+||+.||++|||++|+++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~  375 (391)
T PHA03212        316 DAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLD  375 (391)
T ss_pred             chhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhc
Confidence                   0         0000000000   123457889999999999999999999985

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=7.2e-34  Score=302.66  Aligned_cols=251  Identities=16%  Similarity=0.247  Sum_probs=176.5

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecC------CC
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE------EP  373 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~------~~  373 (592)
                      .+.+.||+|+||.||+|.. .++..||||.+....         ....+|+.+|++++|+||+++++++...      ..
T Consensus        69 ~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~---------~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~  139 (440)
T PTZ00036         69 KLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP---------QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKN  139 (440)
T ss_pred             EEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc---------chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCc
Confidence            3467899999999999996 468899999874321         1245799999999999999999876432      11


Q ss_pred             cceEEEEeeCCCCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC-ceEEecCC
Q 007711          374 FTRMMVFEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLS  450 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~-~~ki~DfG  450 (592)
                      ...++||||+++ +|.+++..  .....+++.....++.|++.||+|||+.+  |+||||||+|||++.++ .+||+|||
T Consensus       140 ~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~--IiHrDLKp~NILl~~~~~~vkL~DFG  216 (440)
T PTZ00036        140 IFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKF--ICHRDLKPQNLLIDPNTHTLKLCDFG  216 (440)
T ss_pred             eEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCcCHHHEEEcCCCCceeeeccc
Confidence            235689999975 67666642  23457889999999999999999999999  99999999999999664 79999999


Q ss_pred             cchhhhhhhh--------hhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC------
Q 007711          451 FWNEIAMAEM--------AATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ------  515 (592)
Q Consensus       451 la~~~~~~~~--------~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~------  515 (592)
                      +++.......        .+.+|+.. ....++.++|||||||++|||+||+.||....  ..+..........      
T Consensus       217 la~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~--~~~~~~~i~~~~~~p~~~~  294 (440)
T PTZ00036        217 SAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQS--SVDQLVRIIQVLGTPTEDQ  294 (440)
T ss_pred             cchhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCCHHH
Confidence            9986542211        12233322 22346788999999999999999999995332  1111111111000      


Q ss_pred             ------CCccccCCCC------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHhhh
Q 007711          516 ------PLQQFVDPTL------SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREIT  565 (592)
Q Consensus       516 ------~~~~~~~~~~------~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~--~L~~i~  565 (592)
                            ....+.-+..      ..++...+.++.+++.+||+.||.+|||+.|+++  .++++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~~  358 (440)
T PTZ00036        295 LKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDLR  358 (440)
T ss_pred             HHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhhh
Confidence                  0000000000      0122234467899999999999999999999884  444443

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=2.4e-33  Score=284.20  Aligned_cols=250  Identities=17%  Similarity=0.234  Sum_probs=184.8

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... ++..|++|.+...............+..|++++++++|+||+++++++....  ..++||
T Consensus         4 ~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~lv~   81 (298)
T cd07841           4 KGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKS--NINLVF   81 (298)
T ss_pred             eeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCC--EEEEEE
Confidence            4567999999999999964 6889999998765443222334566788999999999999999999998866  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+ +|+|.+++.... ..+++..+.+++.|+++||+|||+++  ++|+||||+||+++.++.+||+|||+++.......
T Consensus        82 e~~-~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~~~--i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~  157 (298)
T cd07841          82 EFM-ETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHSNW--ILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNR  157 (298)
T ss_pred             ccc-CCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhCC--eeecCCChhhEEEcCCCCEEEccceeeeeccCCCc
Confidence            999 999999986433 46899999999999999999999999  99999999999999999999999999876543211


Q ss_pred             ---------hhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCC-----------CCCcc
Q 007711          461 ---------AATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV-----------QPLQQ  519 (592)
Q Consensus       461 ---------~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~-----------~~~~~  519 (592)
                               .+.+++.. ....++.++|||||||++|||++|..||.... ..... .......           .....
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  235 (298)
T cd07841         158 KMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDS-DIDQL-GKIFEALGTPTEENWPGVTSLPD  235 (298)
T ss_pred             cccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCc-cHHHH-HHHHHHcCCCchhhhhhcccccc
Confidence                     11222322 12235778999999999999999977774322 21111 1111000           00000


Q ss_pred             ccC------CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          520 FVD------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       520 ~~~------~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...      .............+.+++.+||+.||++||++.|++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~  281 (298)
T cd07841         236 YVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALE  281 (298)
T ss_pred             cccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence            000      0000111233567889999999999999999999987

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=3.5e-33  Score=276.17  Aligned_cols=239  Identities=22%  Similarity=0.339  Sum_probs=185.3

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++.. .++..+++|.+......   ......+.+|++++++++|+|++++++++...+  ..++|+
T Consensus         4 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv~   78 (256)
T cd08220           4 KIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMT---KDERLAAQNECQVLKLLSHPNIIEYYENFLEDK--ALMIVM   78 (256)
T ss_pred             EEEEecccCceEEEEEEEcCCCcEEEEEEEeccccc---cHHHHHHHHHHHHHhhCCCCchhheeeeEecCC--EEEEEE
Confidence            457899999999999986 46788999988654322   234577999999999999999999999887766  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC-CceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~-~~~ki~DfGla~~~~~~~  459 (592)
                      ||+++++|.+++.......+++..+.+++.++++|++|||+++  ++|+||||+||+++++ ..+||+|||+++......
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~--i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~  156 (256)
T cd08220          79 EYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKL--ILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKS  156 (256)
T ss_pred             ecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEEccCCCceecCCCc
Confidence            9999999999997655566899999999999999999999998  9999999999999854 568999999987654321


Q ss_pred             h--------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 M--------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 ~--------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                      .        .+.+++.......+.++||||||+++|||++|+.||...  +.............  .        ..+..
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~--~--------~~~~~  224 (256)
T cd08220         157 KAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAA--NLPALVLKIMSGTF--A--------PISDR  224 (256)
T ss_pred             cccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccC--chHHHHHHHHhcCC--C--------CCCCC
Confidence            1        122233333333578899999999999999999999432  33333333222211  1        11222


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+..+.+++.+||+.+|++|||+.|++.
T Consensus       225 ~~~~l~~li~~~l~~~p~~Rpt~~~ll~  252 (256)
T cd08220         225 YSPDLRQLILSMLNLDPSKRPQLSQIMA  252 (256)
T ss_pred             cCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence            3456889999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=1.6e-33  Score=283.40  Aligned_cols=249  Identities=18%  Similarity=0.213  Sum_probs=181.0

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. ++..+++|.+......   ....+.+.+|++++++++|+|++++++++....  ..++||
T Consensus         5 ~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~~v~   79 (286)
T cd07847           5 KLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDD---PVIKKIALREIRMLKQLKHPNLVNLIEVFRRKR--KLHLVF   79 (286)
T ss_pred             eeeeecccCCeEEEEEEECCCCcEEEEEEEeecccC---ccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCC--EEEEEE
Confidence            4567999999999999975 5889999987643321   123456889999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||++++.|..++..  ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||++....... 
T Consensus        80 e~~~~~~l~~~~~~--~~~~~~~~~~~~~~ql~~~l~~LH~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  155 (286)
T cd07847          80 EYCDHTVLNELEKN--PRGVPEHLIKKIIWQTLQAVNFCHKHN--CIHRDVKPENILITKQGQIKLCDFGFARILTGPGD  155 (286)
T ss_pred             eccCccHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCChhhEEEcCCCcEEECccccceecCCCcc
Confidence            99999888777642  346899999999999999999999988  9999999999999999999999999988654322 


Q ss_pred             --------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHH-HHHHHhcCC-----------CCCc
Q 007711          460 --------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLED-WAADYLSGV-----------QPLQ  518 (592)
Q Consensus       460 --------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~-~~~~~~~~~-----------~~~~  518 (592)
                              ..+.+++... ...++.++|||||||++|||+||+.||......... .........           ....
T Consensus       156 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (286)
T cd07847         156 DYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFK  235 (286)
T ss_pred             cccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccc
Confidence                    1112222221 133577899999999999999999999533221111 011111000           0000


Q ss_pred             cccCCCCC-CC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 QFVDPTLS-SF-----DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 ~~~~~~~~-~~-----~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+... ..     ....+..+.+++.+||+.+|++||++.|++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         236 GLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             cccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence            00000000 00     0122457889999999999999999998874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=6.3e-33  Score=269.07  Aligned_cols=250  Identities=18%  Similarity=0.204  Sum_probs=182.8

Q ss_pred             hcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCc-eeeeeEEEecCCC----cce
Q 007711          303 SNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN-FVNLIGFCEEEEP----FTR  376 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~n-iv~l~g~~~~~~~----~~~  376 (592)
                      .++||+|+||+||+|+ ..+|+.||+|++......+..   -....+|+.++++++|+| ||+|++++...+.    ...
T Consensus        16 ~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~---P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l   92 (323)
T KOG0594|consen   16 VEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGV---PSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKL   92 (323)
T ss_pred             HHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCC---CchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceE
Confidence            3569999999999999 457899999999876543221   233568999999999999 9999999987652    145


Q ss_pred             EEEEeeCCCCCchhhccccCC--CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          377 MMVFEYAPNGTLFEHIHIKES--EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~--~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ++|+||+.. +|..++.....  ..++......+..|+.+|++|||+.+  |+||||||.||||++++.+||+|||+|+.
T Consensus        93 ~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~--IlHRDLKPQNlLi~~~G~lKlaDFGlAra  169 (323)
T KOG0594|consen   93 YLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHG--ILHRDLKPQNLLISSSGVLKLADFGLARA  169 (323)
T ss_pred             EEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCC--eecccCCcceEEECCCCcEeeeccchHHH
Confidence            799999965 89988875432  45677888999999999999999999  99999999999999999999999999997


Q ss_pred             hhhhhhhhcc---cccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCC-----CCCcc
Q 007711          455 IAMAEMAATS---KKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV-----QPLQQ  519 (592)
Q Consensus       455 ~~~~~~~~~~---~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~-----~~~~~  519 (592)
                      .......++.   +.++++|+       |++..||||+|||+.||++++.-|.+.. + .+....+..-.     ..+..
T Consensus       170 ~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~s-e-~~ql~~If~~lGtP~e~~Wp~  247 (323)
T KOG0594|consen  170 FSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDS-E-IDQLFRIFRLLGTPNEKDWPG  247 (323)
T ss_pred             hcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCc-H-HHHHHHHHHHcCCCCccCCCC
Confidence            7644433322   12344443       7899999999999999999888884322 2 22222211111     11111


Q ss_pred             cc---CCC--CC------CCCHHH---HHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          520 FV---DPT--LS------SFDEEQ---LETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       520 ~~---~~~--~~------~~~~~~---~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      +.   +..  ..      ......   .....+++.+|++.+|.+|.|++.+++.
T Consensus       248 v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h  302 (323)
T KOG0594|consen  248 VSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTH  302 (323)
T ss_pred             ccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcC
Confidence            11   000  00      001111   1367899999999999999999988764

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=3.5e-33  Score=282.71  Aligned_cols=236  Identities=19%  Similarity=0.303  Sum_probs=182.6

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||.|+||.||+|.. .++..+++|.+.....     ...+.+.+|+++++.++|+|++++++++...+  ..++|+
T Consensus        23 ~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~-----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   95 (296)
T cd06655          23 RYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQ-----PKKELIINEILVMKELKNPNIVNFLDSFLVGD--ELFVVM   95 (296)
T ss_pred             EEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccC-----chHHHHHHHHHHHHhcCCCceeeeeeeEecCc--eEEEEE
Confidence            447899999999999985 5788999998864332     22457889999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++++|.+++..   ..+++..+..++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||++........
T Consensus        96 e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH~~~--i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~  170 (296)
T cd06655          96 EYLAGGSLTDVVTE---TCMDEAQIAAVCRECLQALEFLHANQ--VIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQS  170 (296)
T ss_pred             EecCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEEccCccchhcccccc
Confidence            99999999998853   35899999999999999999999998  99999999999999999999999999876532211


Q ss_pred             ---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          461 ---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       461 ---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                               .+.+++......++.++|||||||++||++||+.||....  ..+..........  ...      ..+..
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~--~~~~~~~~~~~~~--~~~------~~~~~  240 (296)
T cd06655         171 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN--PLRALYLIATNGT--PEL------QNPEK  240 (296)
T ss_pred             cCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHhcCC--ccc------CCccc
Confidence                     1222333333346788999999999999999999995432  2222222211110  000      11222


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+..+.+++.+||..||++||++.+++.
T Consensus       241 ~~~~~~~li~~~l~~dp~~Rpt~~~il~  268 (296)
T cd06655         241 LSPIFRDFLNRCLEMDVEKRGSAKELLQ  268 (296)
T ss_pred             CCHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence            3456889999999999999999999885

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.5e-33  Score=313.41  Aligned_cols=246  Identities=18%  Similarity=0.270  Sum_probs=182.8

Q ss_pred             HhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      .+.+.+.||+|+||.||++... .+..+++|.+......   ......|..|+.++.+++|||||++++++........+
T Consensus        14 ~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~---e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~ly   90 (1021)
T PTZ00266         14 EYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLK---EREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLY   90 (1021)
T ss_pred             CEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccC---HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEE
Confidence            3445688999999999999964 5677888887643322   23456799999999999999999999988655433578


Q ss_pred             EEEeeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCeEeeCcCCCCeEEcC----------
Q 007711          378 MVFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLN-----PPIAHNYLNSSAVHLTE----------  440 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~-----~~ivH~dLk~~NiLl~~----------  440 (592)
                      |||||+++|+|.+++...  ....+++...+.|+.||+.||+|||+.+     ..||||||||+||||+.          
T Consensus        91 IVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~  170 (1021)
T PTZ00266         91 ILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITA  170 (1021)
T ss_pred             EEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccc
Confidence            999999999999988642  2356899999999999999999999854     34999999999999964          


Q ss_pred             -------CCceEEecCCcchhhhhhh--------hhhcccccC--CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCCh
Q 007711          441 -------DYAAKLSDLSFWNEIAMAE--------MAATSKKLS--SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL  503 (592)
Q Consensus       441 -------~~~~ki~DfGla~~~~~~~--------~~~~~~~~~--~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~  503 (592)
                             ...+||+|||+++......        ..+.+|+..  ....++.++||||||||||||+||+.||.... ..
T Consensus       171 ~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~-~~  249 (1021)
T PTZ00266        171 QANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKAN-NF  249 (1021)
T ss_pred             cccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCC-cH
Confidence                   3458999999988653221        122233322  12236789999999999999999999995322 23


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          504 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+....... ..+      ...    ..+..+.+|+..||+.+|.+||++.|++.
T Consensus       250 ~qli~~lk~~-p~l------pi~----~~S~eL~dLI~~~L~~dPeeRPSa~QlL~  294 (1021)
T PTZ00266        250 SQLISELKRG-PDL------PIK----GKSKELNILIKNLLNLSAKERPSALQCLG  294 (1021)
T ss_pred             HHHHHHHhcC-CCC------CcC----CCCHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence            3333222211 100      001    12356889999999999999999999984

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=8.2e-33  Score=281.58  Aligned_cols=242  Identities=18%  Similarity=0.234  Sum_probs=182.1

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.+.||+|+||.||+|... +++.|++|.+......  .....+++.+|++++++++||||++++++|...+  ..++
T Consensus        17 y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~--~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~--~~~l   92 (307)
T cd06607          17 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQ--SNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREH--TAWL   92 (307)
T ss_pred             hhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccC--cHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCC--eEEE
Confidence            334578999999999999964 6889999987543222  1234467899999999999999999999998877  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |+||++ |++.+++... ...+++..+..++.|++.||.|||+.+  ++||||+|+||++++++.+||+|||+++.....
T Consensus        93 v~e~~~-g~l~~~~~~~-~~~l~~~~~~~~~~ql~~~L~~LH~~~--i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~  168 (307)
T cd06607          93 VMEYCL-GSASDILEVH-KKPLQEVEIAAICHGALQGLAYLHSHE--RIHRDIKAGNILLTEPGTVKLADFGSASLVSPA  168 (307)
T ss_pred             EHHhhC-CCHHHHHHHc-ccCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCcccEEECCCCCEEEeecCcceecCCC
Confidence            999997 6777766432 346899999999999999999999998  999999999999999999999999998765322


Q ss_pred             hh-----hhcccccC---CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          459 EM-----AATSKKLS---SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       459 ~~-----~~~~~~~~---~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                      ..     .+.+++..   ....++.++|||||||++|||+||+.||...  ............ .      .+..  ...
T Consensus       169 ~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~--~~~~~~~~~~~~-~------~~~~--~~~  237 (307)
T cd06607         169 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM--NAMSALYHIAQN-D------SPTL--SSN  237 (307)
T ss_pred             CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCc--cHHHHHHHHhcC-C------CCCC--Cch
Confidence            11     12223322   1223577899999999999999999998432  222222211111 0      0111  122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      .++..+.+++.+||+.+|++||++.+++..
T Consensus       238 ~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  267 (307)
T cd06607         238 DWSDYFRNFVDSCLQKIPQDRPSSEELLKH  267 (307)
T ss_pred             hhCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            345678999999999999999999999863

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=3.9e-33  Score=290.38  Aligned_cols=248  Identities=19%  Similarity=0.280  Sum_probs=177.9

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cc
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~  375 (592)
                      .+.+.||+|+||.||++.. ..|..+|+|.+......   ......+.+|+.+++.++||||+++++++.....    ..
T Consensus        24 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  100 (359)
T cd07876          24 QQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQN---QTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQD  100 (359)
T ss_pred             EEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccc---hhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccce
Confidence            3457899999999999985 45889999988643221   2335678899999999999999999999865431    13


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++ +|.+.++    ..+++.....++.|++.||+|||+.+  |+||||||+||+++.++.+||+|||+++..
T Consensus       101 ~~lv~e~~~~-~l~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~~~--ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~  173 (359)
T cd07876         101 VYLVMELMDA-NLCQVIH----MELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDCTLKILDFGLARTA  173 (359)
T ss_pred             eEEEEeCCCc-CHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEECCCCCEEEecCCCcccc
Confidence            6899999975 5666554    24788888999999999999999998  999999999999999999999999998754


Q ss_pred             hhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHH--------------------
Q 007711          456 AMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA--------------------  507 (592)
Q Consensus       456 ~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~--------------------  507 (592)
                      ....        ..+.+|+......++.++|||||||++|||+||+.||...+. ...|.                    
T Consensus       174 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  252 (359)
T cd07876         174 CTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDH-IDQWNKVIEQLGTPSAEFMNRLQPT  252 (359)
T ss_pred             ccCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            3211        122333333333478899999999999999999999953321 11111                    


Q ss_pred             -HHHhcCCCCCc-----ccc----CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          508 -ADYLSGVQPLQ-----QFV----DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       508 -~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       ..+........     +..    .+............+.+++.+||+.||++|||+.|++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  314 (359)
T cd07876         253 VRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALR  314 (359)
T ss_pred             HHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhc
Confidence             01111000000     000    00000111122356889999999999999999999987

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=3.7e-33  Score=281.07  Aligned_cols=241  Identities=20%  Similarity=0.309  Sum_probs=182.9

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||+|+||.||++... .+..+|+|.+....    ......+|.+|++++.+++|+||+++++++...+  ..++|
T Consensus         4 ~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~----~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv   77 (286)
T cd06622           4 EVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLEL----DESKFNQIIMELDILHKAVSPYIVDFYGAFFIEG--AVYMC   77 (286)
T ss_pred             hhhhhhcccCCeEEEEEEEcCCCcEEEEEEeeccc----CHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCC--eEEEE
Confidence            34578999999999999975 68899999875432    1223467899999999999999999999988776  67999


Q ss_pred             EeeCCCCCchhhcccc-CCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          380 FEYAPNGTLFEHIHIK-ESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~-~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +||+++++|..+++.. ....+++..+..++.+++.|+.|||+ ++  ++||||||+||+++.++.+||+|||+++....
T Consensus        78 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  155 (286)
T cd06622          78 MEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHN--IIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVA  155 (286)
T ss_pred             EeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCC--EeeCCCCHHHEEECCCCCEEEeecCCcccccC
Confidence            9999999999888643 13468999999999999999999996 57  99999999999999999999999999876532


Q ss_pred             hhh-------hhcccccCCC------CCCCCCCcchhhHHHHHHHHhCCCcccCCCCC-hHHHHHHHhcCCCCCccccCC
Q 007711          458 AEM-------AATSKKLSSA------PSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       458 ~~~-------~~~~~~~~~~------~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ...       .+.+++....      ..++.++|||||||++|||+||+.||...... ...........          
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~----------  225 (286)
T cd06622         156 SLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDG----------  225 (286)
T ss_pred             CccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHHHHhhc----------
Confidence            111       1222332211      12477899999999999999999999532211 11111111111          


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .....+......+.+++.+||+.+|++||++.+++.
T Consensus       226 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  261 (286)
T cd06622         226 DPPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLE  261 (286)
T ss_pred             CCCCCCcccCHHHHHHHHHHcccCcccCCCHHHHhc
Confidence            111123334567889999999999999999999886

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=7.9e-33  Score=279.60  Aligned_cols=238  Identities=20%  Similarity=0.247  Sum_probs=180.9

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... ++..+++|.+....     ....+.|.+|++++++++|+||+++++++....  ..++||
T Consensus        16 i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   88 (292)
T cd06644          16 IIGELGDGAFGKVYKAKNKETGALAAAKVIETKS-----EEELEDYMVEIEILATCNHPYIVKLLGAFYWDG--KLWIMI   88 (292)
T ss_pred             hhheecCCCCeEEEEEEECCCCceEEEEEeccCC-----HHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCC--eEEEEE
Confidence            4567999999999999965 47888888875432     234567899999999999999999999988776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++++|..++... ...+++..+..++.|++.|++|||+.+  ++||||||+||+++.++.+||+|||++....... 
T Consensus        89 e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~~~--i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~  165 (292)
T cd06644          89 EFCPGGAVDAIMLEL-DRGLTEPQIQVICRQMLEALQYLHSMK--IIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQ  165 (292)
T ss_pred             ecCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHhcCC--eeecCCCcceEEEcCCCCEEEccCccceecccccc
Confidence            999999998877532 346899999999999999999999998  9999999999999999999999999876532211 


Q ss_pred             --------hhhcccccCC-----CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          460 --------MAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       460 --------~~~~~~~~~~-----~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                              ..+.+++...     ...++.++|||||||++|||+||+.||....  ..+..........       +.. 
T Consensus       166 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~--~~~~~~~~~~~~~-------~~~-  235 (292)
T cd06644         166 RRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN--PMRVLLKIAKSEP-------PTL-  235 (292)
T ss_pred             ccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCcccc--HHHHHHHHhcCCC-------ccC-
Confidence                    1122233221     1224678999999999999999999984322  2222222221111       000 


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+......+.+++.+||+.+|++||+++++++
T Consensus       236 ~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  268 (292)
T cd06644         236 SQPSKWSMEFRDFLKTALDKHPETRPSAAQLLE  268 (292)
T ss_pred             CCCcccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            112233456889999999999999999999875

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=3.2e-33  Score=291.67  Aligned_cols=243  Identities=19%  Similarity=0.253  Sum_probs=179.8

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ..+.+.||+|+||.||+++.. +++.+|+|.+.......  ....+.+.+|+.+++.++||||+++++++....  ..++
T Consensus        45 y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~--~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~--~~~l  120 (371)
T cd05622          45 YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIK--RSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR--YLYM  120 (371)
T ss_pred             cEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhh--hHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC--EEEE
Confidence            344588999999999999965 57889999875432211  123456889999999999999999999998776  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||||+++|+|.+++..   ..++......++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....
T Consensus       121 v~Ey~~gg~L~~~~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~  195 (371)
T cd05622         121 VMEYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIHSMG--FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKE  195 (371)
T ss_pred             EEcCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCC--EEeCCCCHHHEEECCCCCEEEEeCCceeEcCcC
Confidence            9999999999998863   34778888889999999999999999  999999999999999999999999998765321


Q ss_pred             hh----hhcccccCCCCC----------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          459 EM----AATSKKLSSAPS----------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       459 ~~----~~~~~~~~~~~~----------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ..    ....+..+++||          ++.++|||||||++|||++|+.||..  .+................ +  +.
T Consensus       196 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~--~~~~~~~~~i~~~~~~~~-~--~~  270 (371)
T cd05622         196 GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA--DSLVGTYSKIMNHKNSLT-F--PD  270 (371)
T ss_pred             CcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCC--CCHHHHHHHHHcCCCccc-C--CC
Confidence            11    111122233333          67899999999999999999999953  333333333333211111 0  10


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCC--CCCHHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEK--RPTMRDIAAI  560 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~--RPs~~ev~~~  560 (592)
                          .......+.+++..|++.++.+  |++++|+++.
T Consensus       271 ----~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h  304 (371)
T cd05622         271 ----DNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH  304 (371)
T ss_pred             ----cCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcC
Confidence                1123356889999999844433  7788888763

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=3.5e-33  Score=285.59  Aligned_cols=186  Identities=17%  Similarity=0.260  Sum_probs=145.2

Q ss_pred             hcccCcCCCeEEEEEEeC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          303 SNVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ..+||+|+||.||+|+..   ++..+|+|.+....       ....+.+|++++++++||||+++++++........+++
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~-------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv   78 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG-------ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLL   78 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC-------CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEE
Confidence            357999999999999864   45788998775322       12457789999999999999999998865443357899


Q ss_pred             EeeCCCCCchhhcccc-------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE----cCCCceEEec
Q 007711          380 FEYAPNGTLFEHIHIK-------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL----TEDYAAKLSD  448 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~-------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl----~~~~~~ki~D  448 (592)
                      +||+. ++|.+++...       ....+++.....++.|++.||+|||+.+  |+||||||+|||+    +.++.+||+|
T Consensus        79 ~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~--ivHrDlkp~Nil~~~~~~~~~~~kl~D  155 (317)
T cd07868          79 FDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW--VLHRDLKPANILVMGEGPERGRVKIAD  155 (317)
T ss_pred             EeccC-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCC--EEcCCCCHHHEEEecCCCCcCcEEEee
Confidence            99996 5887776421       1235888899999999999999999998  9999999999999    4667999999


Q ss_pred             CCcchhhhhhh------------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccC
Q 007711          449 LSFWNEIAMAE------------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLV  498 (592)
Q Consensus       449 fGla~~~~~~~------------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~  498 (592)
                      ||+++......            ..+.+|+... ...++.++|||||||++|||+||+.||..
T Consensus       156 fG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~  218 (317)
T cd07868         156 MGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             cCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccC
Confidence            99997653211            1122333222 23367889999999999999999999953

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-33  Score=280.84  Aligned_cols=236  Identities=16%  Similarity=0.268  Sum_probs=183.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||.|+||.||+|+.. ++..+++|.+.....    ......+.+|++++++++|+||+++++++....  ..++|+
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   78 (274)
T cd06609           5 LLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEA----EDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGS--KLWIIM   78 (274)
T ss_pred             hhhhhcCCCCeEEEEEEECCCCeEEEEEEeecccc----chHHHHHHHHHHHHHHcCCCCeeeeeEEEEECC--eEEEEE
Confidence            4567999999999999964 688999998764321    223457889999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++++|.++++..   .+++.....++.+++.|+.|||+.+  ++||||+|+||++++++.++|+|||+++.......
T Consensus        79 e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh~~~--i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  153 (274)
T cd06609          79 EYCGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLHEEG--KIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMS  153 (274)
T ss_pred             EeeCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEECCCCCEEEcccccceeeccccc
Confidence            999999999998642   7899999999999999999999998  99999999999999999999999999877643211


Q ss_pred             ---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          461 ---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       461 ---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                               .+.+++......++.++|||||||++|||+||+.||....  ..+........       ..+....  ..
T Consensus       154 ~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~--~~~~~~~~~~~-------~~~~~~~--~~  222 (274)
T cd06609         154 KRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLH--PMRVLFLIPKN-------NPPSLEG--NK  222 (274)
T ss_pred             ccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCc--hHHHHHHhhhc-------CCCCCcc--cc
Confidence                     1223333333346889999999999999999999995322  22222111111       1111110  00


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+..+.+++.+||..+|++||+++++++
T Consensus       223 ~~~~~~~~l~~~l~~~p~~Rpt~~~il~  250 (274)
T cd06609         223 FSKPFKDFVSLCLNKDPKERPSAKELLK  250 (274)
T ss_pred             cCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence            3456889999999999999999999976

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=2.4e-33  Score=282.03  Aligned_cols=248  Identities=19%  Similarity=0.260  Sum_probs=181.1

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+.||.|+||.||+|+.. ++..++||.+......   ......+.+|++++++++|+||+++++++...+  ..++||
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   78 (284)
T cd07860           4 KVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTET---EGVPSTAIREISLLKELNHPNIVKLLDVIHTEN--KLYLVF   78 (284)
T ss_pred             eeeeecCCCceEEEEEEECCCCCEEEEEEccccccc---cccchHHHHHHHHHHhcCCCCCcchhhhcccCC--cEEEEe
Confidence            3467999999999999864 6889999987543322   123457889999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+. ++|.+++.......+++.....++.+++.|++|||+.+  ++||||+|+||++++++.+||+|||+++.......
T Consensus        79 e~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~--i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~  155 (284)
T cd07860          79 EFLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHR--VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR  155 (284)
T ss_pred             eccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEECCCCCEEEeeccchhhcccCcc
Confidence            9996 68988887655567899999999999999999999998  99999999999999999999999999876532211


Q ss_pred             hh---cccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC--------------
Q 007711          461 AA---TSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP--------------  516 (592)
Q Consensus       461 ~~---~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~--------------  516 (592)
                      ..   .....+.+||       ++.++|||||||++|||+||+.||....  ..+...........              
T Consensus       156 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (284)
T cd07860         156 TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDS--EIDQLFRIFRTLGTPDEVVWPGVTSLPD  233 (284)
T ss_pred             ccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHhCCCChhhhhhhhHHHH
Confidence            00   0111233333       4778999999999999999999995322  11111111110000              


Q ss_pred             ----CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          517 ----LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       517 ----~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          +..................+.+++.+||+.||++||++++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         234 YKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             HHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence                0000000000001112346789999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9e-33  Score=277.34  Aligned_cols=239  Identities=21%  Similarity=0.271  Sum_probs=183.0

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||.|+||.||+|... ++..+++|......     ....+.|.+|++++++++|+||+++++++....  ..++|
T Consensus         8 ~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   80 (280)
T cd06611           8 EIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIES-----EEELEDFMVEIDILSECKHPNIVGLYEAYFYEN--KLWIL   80 (280)
T ss_pred             HHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCC-----HHHHHHHHHHHHHHHhCCCCceeEEEEEEecCC--eEEEE
Confidence            34567999999999999974 57889999875432     234567999999999999999999999998776  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++|+|.+++... ...+++.....++.+++.|+.|||+.+  ++|+||||+||+++.++.+||+|||++.......
T Consensus        81 ~e~~~~~~L~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lh~~~--i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~  157 (280)
T cd06611          81 IEFCDGGALDSIMLEL-ERGLTEPQIRYVCRQMLEALNFLHSHK--VIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTL  157 (280)
T ss_pred             eeccCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChhhEEECCCCCEEEccCccchhhcccc
Confidence            9999999999988642 346899999999999999999999998  9999999999999999999999999876543211


Q ss_pred             ---------hhhcccccC-----CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          460 ---------MAATSKKLS-----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       460 ---------~~~~~~~~~-----~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                               ..+.+++..     ....++.++||||||+++|||++|+.||...  +..+..........       +..
T Consensus       158 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~~-------~~~  228 (280)
T cd06611         158 QKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHEL--NPMRVLLKILKSEP-------PTL  228 (280)
T ss_pred             cccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccC--CHHHHHHHHhcCCC-------CCc
Confidence                     112222221     1223567899999999999999999999432  22222222222111       000


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       ..+...+..+.+++.+||+.+|++||++.++++
T Consensus       229 -~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (280)
T cd06611         229 -DQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLK  261 (280)
T ss_pred             -CCcccCCHHHHHHHHHHhccChhhCcCHHHHhc
Confidence             112223456889999999999999999999875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=2.9e-33  Score=283.53  Aligned_cols=237  Identities=19%  Similarity=0.301  Sum_probs=182.3

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|.. .++..|++|.+......     ..+.+.+|+.+++.++|+||+++++++...+  ..++|
T Consensus        22 ~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~-----~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~lv   94 (297)
T cd06656          22 TRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQP-----KKELIINEILVMRENKNPNIVNYLDSYLVGD--ELWVV   94 (297)
T ss_pred             eeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccc-----hHHHHHHHHHHHHhCCCCCEeeEEEEEecCC--EEEEe
Confidence            3457899999999999995 57899999988643321     2456889999999999999999999998876  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++++|.+++..   ..+++..+..++.+++.|+.|||+.+  ++||||||+||+++.++.+||+|||++.......
T Consensus        95 ~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~l~~~L~~LH~~~--i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~  169 (297)
T cd06656          95 MEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALDFLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ  169 (297)
T ss_pred             ecccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEECcCccceEccCCc
Confidence            999999999998853   35788999999999999999999998  9999999999999999999999999987543211


Q ss_pred             ---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 ---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 ---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                               ..+.+++......++.++|||||||++||++||+.||...+.  ..........  .     .+. ...+.
T Consensus       170 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~--~~~~~~~~~~--~-----~~~-~~~~~  239 (297)
T cd06656         170 SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP--LRALYLIATN--G-----TPE-LQNPE  239 (297)
T ss_pred             cCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc--chheeeeccC--C-----CCC-CCCcc
Confidence                     112223333334467889999999999999999999953321  1110000000  0     000 01122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .....+.+++.+||+.+|++||+++++++
T Consensus       240 ~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         240 RLSAVFRDFLNRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             ccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            33456889999999999999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=7.1e-33  Score=275.22  Aligned_cols=237  Identities=20%  Similarity=0.287  Sum_probs=184.1

Q ss_pred             cCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeCC
Q 007711          306 IGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  384 (592)
Q Consensus       306 lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~~  384 (592)
                      ||.|+||.||+++.. ++..+++|.+.......  ....+.+.+|++++++++|+||+++++++....  ..++++||++
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e~~~   76 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVE--TGQQEHIFSEKEILEECNHPFIVKLYRTFKDKK--YIYMLMEYCL   76 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchh--hhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCC--ccEEEEecCC
Confidence            699999999999975 48899999886443221  234567999999999999999999999988776  6799999999


Q ss_pred             CCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-----
Q 007711          385 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-----  459 (592)
Q Consensus       385 ~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-----  459 (592)
                      +++|.+++...  ..+++..+..++.+++.|++|||+.+  ++|+||+|+||+++.++.+||+|||+++......     
T Consensus        77 ~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lH~~~--~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~  152 (262)
T cd05572          77 GGELWTILRDR--GLFDEYTARFYIACVVLAFEYLHNRG--IIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTF  152 (262)
T ss_pred             CCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhCC--cccCCCCHHHEEEcCCCCEEEeeCCcccccCcccccccc
Confidence            99999998643  45788999999999999999999988  9999999999999999999999999988764331     


Q ss_pred             ---hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHH
Q 007711          460 ---MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETL  536 (592)
Q Consensus       460 ---~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  536 (592)
                         ..+.+++......++.++||||||+++|||++|+.||.....+..+.......+....         .++......+
T Consensus       153 ~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  223 (262)
T cd05572         153 CGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGKL---------EFPNYIDKAA  223 (262)
T ss_pred             cCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCCCC---------CCCcccCHHH
Confidence               1122233333334678899999999999999999999654433444444433211111         1122224579


Q ss_pred             HHHHHHhcccCCCCCCC-----HHHHHH
Q 007711          537 GELIKSCVRADPEKRPT-----MRDIAA  559 (592)
Q Consensus       537 ~~l~~~Cl~~dP~~RPs-----~~ev~~  559 (592)
                      .+++.+||+.+|++||+     ++|+++
T Consensus       224 ~~~i~~~l~~~p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         224 KDLIKQLLRRNPEERLGNLKGGIKDIKK  251 (262)
T ss_pred             HHHHHHHccCChhhCcCCcccCHHHHhc
Confidence            99999999999999999     666554

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=8.4e-33  Score=276.27  Aligned_cols=244  Identities=20%  Similarity=0.327  Sum_probs=181.5

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCC-----CchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKD-----WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~-----~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      .+.||+|+||.||+|.. .+|..+|+|.+.......     ......+.+.+|+++++.++|+|++++++++....  ..
T Consensus         6 ~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   83 (272)
T cd06629           6 GELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE--YL   83 (272)
T ss_pred             cceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC--ce
Confidence            46799999999999985 468899999875432211     01123456889999999999999999999998776  67


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|+||+++|+|.++++..  ..+++..+..++.+++.|+.|||+.+  ++||||+|+||++++++.+|++|||+++...
T Consensus        84 ~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~  159 (272)
T cd06629          84 SIFLEYVPGGSIGSCLRTY--GRFEEQLVRFFTEQVLEGLAYLHSKG--ILHRDLKADNLLVDADGICKISDFGISKKSD  159 (272)
T ss_pred             EEEEecCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhhCC--eeecCCChhhEEEcCCCeEEEeecccccccc
Confidence            9999999999999998643  46889999999999999999999988  9999999999999999999999999987543


Q ss_pred             hhh-----------hhhcccccCCCC--CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          457 MAE-----------MAATSKKLSSAP--SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       457 ~~~-----------~~~~~~~~~~~~--~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ...           ..+.+++.....  .++.++||||||+++||+++|+.||..... ..... .....  .....++.
T Consensus       160 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~-~~~~~-~~~~~--~~~~~~~~  235 (272)
T cd06629         160 DIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEA-IAAMF-KLGNK--RSAPPIPP  235 (272)
T ss_pred             ccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcch-HHHHH-Hhhcc--ccCCcCCc
Confidence            211           112223322221  267889999999999999999999943221 11111 11111  01111111


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .   .....+..+.+++.+||+.+|++||++.++++
T Consensus       236 ~---~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (272)
T cd06629         236 D---VSMNLSPVALDFLNACFTINPDNRPTARELLQ  268 (272)
T ss_pred             c---ccccCCHHHHHHHHHHhcCChhhCCCHHHHhh
Confidence            1   11223467899999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=4.7e-33  Score=279.01  Aligned_cols=234  Identities=21%  Similarity=0.248  Sum_probs=177.4

Q ss_pred             cCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeCC
Q 007711          306 IGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  384 (592)
Q Consensus       306 lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~~  384 (592)
                      ||+|+||.||++.. .+|..+++|.+.......  ....+.+..|+++++.++||||+++++++...+  ..++|+||++
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~e~~~   76 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKK--RKGEQMALNEKKILEKVSSRFIVSLAYAFETKD--DLCLVMTLMN   76 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhh--hhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCC--eEEEEEecCC
Confidence            69999999999985 468899999886433221  223456788999999999999999999988776  6799999999


Q ss_pred             CCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-----
Q 007711          385 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-----  459 (592)
Q Consensus       385 ~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-----  459 (592)
                      +++|.+++.......+++..+..++.+++.|+.|||+++  ++||||+|+||++++++.+||+|||.++......     
T Consensus        77 ~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~--i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  154 (277)
T cd05577          77 GGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRR--IVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGR  154 (277)
T ss_pred             CCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEECCCCCEEEccCcchhhhccCCccccc
Confidence            999999987554457899999999999999999999998  9999999999999999999999999987653211     


Q ss_pred             ---hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC--ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 007711          460 ---MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  534 (592)
Q Consensus       460 ---~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (592)
                         ..+.+++......++.++|||||||++|||++|+.||.....  ............           ....+.....
T Consensus       155 ~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~  223 (277)
T cd05577         155 AGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEM-----------AVEYPDKFSP  223 (277)
T ss_pred             cCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhccccc-----------cccCCccCCH
Confidence               112223333333367889999999999999999999954332  111111111100           0011222345


Q ss_pred             HHHHHHHHhcccCCCCCCCHHH
Q 007711          535 TLGELIKSCVRADPEKRPTMRD  556 (592)
Q Consensus       535 ~l~~l~~~Cl~~dP~~RPs~~e  556 (592)
                      .+.+++.+||+.||++||++++
T Consensus       224 ~~~~li~~~l~~~p~~R~~~~~  245 (277)
T cd05577         224 EAKDLCEALLQKDPEKRLGCRG  245 (277)
T ss_pred             HHHHHHHHHccCChhHccCCCc
Confidence            6889999999999999995554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=100.00  E-value=1e-33  Score=273.75  Aligned_cols=245  Identities=21%  Similarity=0.320  Sum_probs=191.5

Q ss_pred             hhcccCcCCCeEEEEEEeCC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          302 FSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +..++-+|.||.||+|.|.+      .+.|-||.++.    ....-....|..|.-.+..+.|||+..+.|+|.+... .
T Consensus       288 l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~----~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~~-~  362 (563)
T KOG1024|consen  288 LSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQ----HASQIQVNLLLQESMLLYGASHPNLLSVLGVSIEDYA-T  362 (563)
T ss_pred             chhhhhcCchhheeeeeecccCCcchHHHHHHHHHHh----cccHHHHHHHHHHHHHHhcCcCCCccceeEEEeeccC-c
Confidence            34678999999999997753      34445554432    2223345678899999999999999999999987643 5


Q ss_pred             eEEEEeeCCCCCchhhccc------cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecC
Q 007711          376 RMMVFEYAPNGTLFEHIHI------KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  449 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~------~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~Df  449 (592)
                      .+++|.++.-|+|..++..      +..+.+.-.+...+|.|++.|++|||..+  +||.||.++|++||+..++||+|=
T Consensus       363 P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~--ViHkDiAaRNCvIdd~LqVkltDs  440 (563)
T KOG1024|consen  363 PFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHG--VIHKDIAARNCVIDDQLQVKLTDS  440 (563)
T ss_pred             ceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcC--cccchhhhhcceehhheeEEeccc
Confidence            7899999999999999972      23355667788899999999999999999  999999999999999999999999


Q ss_pred             Ccchhhhhhhhh-----hcccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCC
Q 007711          450 SFWNEIAMAEMA-----ATSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL  517 (592)
Q Consensus       450 Gla~~~~~~~~~-----~~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~  517 (592)
                      .++|.+-.....     ..-|.-|+++      +++.++|||||||+||||+| |+.||  .+.++.+... ++.+...+
T Consensus       441 aLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~Py--aeIDPfEm~~-ylkdGyRl  517 (563)
T KOG1024|consen  441 ALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPY--AEIDPFEMEH-YLKDGYRL  517 (563)
T ss_pred             hhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCc--cccCHHHHHH-HHhcccee
Confidence            998876433221     1122334444      47999999999999999999 99999  4555555443 34343333


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      .+         |-+|+.+++.+|..||+.+|++||+++|++.-|.+.-
T Consensus       518 aQ---------P~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF~  556 (563)
T KOG1024|consen  518 AQ---------PFNCPDELFTVMACCWALLPEERPSFSQLVICLSEFH  556 (563)
T ss_pred             cC---------CCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence            22         4567789999999999999999999999999998864

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=5.2e-33  Score=286.19  Aligned_cols=244  Identities=17%  Similarity=0.224  Sum_probs=179.9

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+++.+ .+..+|+|++.......  ......|.+|+.++..++|+||+++++++....  ..++||
T Consensus         5 ~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv~   80 (332)
T cd05623           5 ILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLK--RAETACFREERDVLVNGDNQWITTLHYAFQDEN--NLYLVM   80 (332)
T ss_pred             EEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHH--hhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCC--EEEEEE
Confidence            4578999999999999975 46788999875422111  223456889999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.++++.. ...+++.....++.+++.|++|||+.+  |+||||||+|||++.++.+||+|||+++...... 
T Consensus        81 ey~~~g~L~~~l~~~-~~~l~~~~~~~~~~qi~~al~~lH~~~--iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~  157 (332)
T cd05623          81 DYYVGGDLLTLLSKF-EDRLPEDMARFYLAEMVIAIDSVHQLH--YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGT  157 (332)
T ss_pred             eccCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHEEECCCCCEEEeecchheecccCCc
Confidence            999999999999642 346889999999999999999999998  9999999999999999999999999987542211 


Q ss_pred             ---------hhhcccccCC-----CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          460 ---------MAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       460 ---------~~~~~~~~~~-----~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                               ..+.+++...     ...++.++|||||||++|||++|+.||..  .+..+.............  ..   
T Consensus       158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~--~~~~~~~~~i~~~~~~~~--~p---  230 (332)
T cd05623         158 VQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYA--ESLVETYGKIMNHKERFQ--FP---  230 (332)
T ss_pred             ceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCC--CCHHHHHHHHhCCCcccc--CC---
Confidence                     1122233221     12357799999999999999999999953  334444433333211111  11   


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCC--CCCHHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEK--RPTMRDIAAI  560 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~--RPs~~ev~~~  560 (592)
                       .........+.+++.+|+..++++  |++++|+++.
T Consensus       231 -~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         231 -AQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             -CccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence             111223456888999887654444  6888888754

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=3.4e-33  Score=283.55  Aligned_cols=246  Identities=16%  Similarity=0.217  Sum_probs=179.4

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. ++..||+|.+.......    ....+.+|+.++++++|+||+++++++....  ..++|+
T Consensus        10 ~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~--~~~lv~   83 (301)
T cd07873          10 KLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEG----APCTAIREVSLLKDLKHANIVTLHDIIHTEK--SLTLVF   83 (301)
T ss_pred             EeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccC----chhHHHHHHHHHHhcCCCCcceEEEEEecCC--eEEEEE
Confidence            4578999999999999864 57889999886443221    2345778999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||++ ++|.+++... ...+++.....++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++.......
T Consensus        84 e~~~-~~l~~~l~~~-~~~~~~~~~~~~~~qi~~aL~~lH~~~--i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~  159 (301)
T cd07873          84 EYLD-KDLKQYLDDC-GNSINMHNVKLFLFQLLRGLNYCHRRK--VLHRDLKPQNLLINERGELKLADFGLARAKSIPTK  159 (301)
T ss_pred             eccc-cCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCCHHHEEECCCCcEEECcCcchhccCCCCC
Confidence            9997 5898887532 346789999999999999999999998  99999999999999999999999999875432111


Q ss_pred             h---hcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-----CCccc-----
Q 007711          461 A---ATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----PLQQF-----  520 (592)
Q Consensus       461 ~---~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----~~~~~-----  520 (592)
                      .   ......+.+|+       ++.++|||||||++|||+||+.||....  ..+..........     .+..+     
T Consensus       160 ~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (301)
T cd07873         160 TYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGST--VEEQLHFIFRILGTPTEETWPGILSNEE  237 (301)
T ss_pred             cccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHcCCCChhhchhhhcccc
Confidence            0   01112233333       5778999999999999999999995332  2222211111000     00000     


Q ss_pred             ----cCCCC-----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 ----VDPTL-----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ----~~~~~-----~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          ..+..     ..........+.+++.+|++.||.+|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~  285 (301)
T cd07873         238 FKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK  285 (301)
T ss_pred             ccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence                00000     0011123456889999999999999999999885

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=7e-33  Score=274.11  Aligned_cols=240  Identities=28%  Similarity=0.444  Sum_probs=185.9

Q ss_pred             hhcccCcCCCeEEEEEEeCC-----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          302 FSNVIGSSPIGTVYKGTLSN-----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~-----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.+.||.|+||.||++...+     +..+++|.+.....    ....+.+..|++++.+++|+||+++++++...+  ..
T Consensus         3 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~   76 (258)
T smart00219        3 LGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDAD----EQQIEEFLREARIMRKLDHPNIVKLLGVCTEEE--PL   76 (258)
T ss_pred             ccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCC----hHHHHHHHHHHHHHHhcCCCchheEEEEEcCCC--ee
Confidence            45789999999999999754     37889998754322    124578999999999999999999999998876  67


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      +++|||+++++|.+++.......+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++...
T Consensus        77 ~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~--~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~  154 (258)
T smart00219       77 MIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKN--FIHRDLAARNCLVGENLVVKISDFGLSRDLY  154 (258)
T ss_pred             EEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCC--eeecccccceEEEccCCeEEEcccCCceecc
Confidence            99999999999999987543333899999999999999999999998  9999999999999999999999999987664


Q ss_pred             hhhh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          457 MAEM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       457 ~~~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ....          .+.+++......++.++||||||++++||++ |+.||..  ....+......... .         
T Consensus       155 ~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~--~~~~~~~~~~~~~~-~---------  222 (258)
T smart00219      155 DDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPG--MSNEEVLEYLKKGY-R---------  222 (258)
T ss_pred             cccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHhcCC-C---------
Confidence            3211          1112222223346889999999999999999 8888843  23333333322221 1         


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL  561 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L  561 (592)
                      ...+...+.++.+++.+||..+|++|||+.|+++.|
T Consensus       223 ~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      223 LPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             CCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence            011122445789999999999999999999998754

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=4e-33  Score=285.16  Aligned_cols=185  Identities=17%  Similarity=0.253  Sum_probs=144.6

Q ss_pred             cccCcCCCeEEEEEEeC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          304 NVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+||+|+||.||+|+..   ++..+|+|.+....       ....+.+|++++++++||||+++++++........++|+
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~-------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~   79 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG-------ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLF   79 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCC-------CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEE
Confidence            57999999999999965   34678888775322       124578899999999999999999998654433678999


Q ss_pred             eeCCCCCchhhcccc-------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE----cCCCceEEecC
Q 007711          381 EYAPNGTLFEHIHIK-------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL----TEDYAAKLSDL  449 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~-------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl----~~~~~~ki~Df  449 (592)
                      ||+++ +|.+++...       ....+++.....++.|++.||+|||+.+  |+||||||+|||+    ++++.+||+||
T Consensus        80 e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~--ivH~Dlkp~Nil~~~~~~~~~~~kl~Df  156 (317)
T cd07867          80 DYAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANW--VLHRDLKPANILVMGEGPERGRVKIADM  156 (317)
T ss_pred             eeeCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCC--EEcCCCCHHHEEEccCCCCCCcEEEeec
Confidence            99974 777766421       2235788999999999999999999998  9999999999999    56789999999


Q ss_pred             Ccchhhhhhh------------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccC
Q 007711          450 SFWNEIAMAE------------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLV  498 (592)
Q Consensus       450 Gla~~~~~~~------------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~  498 (592)
                      |+++......            ..+.+|+... ...++.++|||||||++|||+||+.||..
T Consensus       157 G~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~  218 (317)
T cd07867         157 GFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             cceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccc
Confidence            9998653221            1122333222 23367889999999999999999999953

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-32  Score=272.02  Aligned_cols=240  Identities=19%  Similarity=0.246  Sum_probs=184.0

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... ++..+++|.+.....     ...+.+.+|++++++++|+||++++|++....  ..+++|
T Consensus         7 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-----~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~l~~   79 (262)
T cd06613           7 LIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPG-----DDFEIIQQEISMLKECRHPNIVAYFGSYLRRD--KLWIVM   79 (262)
T ss_pred             EEEEecCCCceEEEEeEecCCCCEEEEEEEEcCch-----hhHHHHHHHHHHHHhCCCCChhceEEEEEeCC--EEEEEE
Confidence            4578999999999999964 577899998864432     13567899999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++++|.+++... ...++......++.+++.|++|||+.+  ++|+||||+||++++++.+||+|||++........
T Consensus        80 e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lh~~~--i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  156 (262)
T cd06613          80 EYCGGGSLQDIYQVT-RGPLSELQIAYVCRETLKGLAYLHETG--KIHRDIKGANILLTEDGDVKLADFGVSAQLTATIA  156 (262)
T ss_pred             eCCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHhCC--ceecCCChhhEEECCCCCEEECccccchhhhhhhh
Confidence            999999999988643 246889999999999999999999998  99999999999999999999999999876543211


Q ss_pred             ---------hhcccccCCCC---CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          461 ---------AATSKKLSSAP---SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       461 ---------~~~~~~~~~~~---~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                               .+.+++.....   .++.++|||||||++|||+||+.||....  ..+.........  +    .+.....
T Consensus       157 ~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~--~~~~~~~~~~~~--~----~~~~~~~  228 (262)
T cd06613         157 KRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLH--PMRALFLISKSN--F----PPPKLKD  228 (262)
T ss_pred             ccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHhcc--C----CCccccc
Confidence                     12333333222   46778999999999999999999995322  111111111110  0    1111112


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+.++.+++.+||..+|.+||++.+++.
T Consensus       229 ~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         229 KEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             hhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            2334567899999999999999999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=1.2e-32  Score=274.28  Aligned_cols=240  Identities=16%  Similarity=0.224  Sum_probs=179.3

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|+. .++..+++|.+.....     .....+.+|+.+++.++||||+++++++...+  ..++|
T Consensus        12 ~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-----~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~--~~~lv   84 (267)
T cd06645          12 ELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPG-----EDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRD--KLWIC   84 (267)
T ss_pred             HHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCch-----hHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCC--EEEEE
Confidence            3457799999999999985 4688899998764322     12356788999999999999999999998776  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||+++++|.+++..  ...+++.....++.+++.|+.|||+.+  ++|+||||+||+++.++.+||+|||++.......
T Consensus        85 ~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd06645          85 MEFCGGGSLQDIYHV--TGPLSESQIAYVSRETLQGLYYLHSKG--KMHRDIKGANILLTDNGHVKLADFGVSAQITATI  160 (267)
T ss_pred             EeccCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEECCCCCEEECcceeeeEccCcc
Confidence            999999999998863  346889999999999999999999998  9999999999999999999999999986543211


Q ss_pred             ---------hhhcccccC---CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          460 ---------MAATSKKLS---SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       460 ---------~~~~~~~~~---~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                               ..+.+|+..   ....++.++|||||||++|||++|+.||......  .........  ..   ..+....
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~--~~~~~~~~~--~~---~~~~~~~  233 (267)
T cd06645         161 AKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPM--RALFLMTKS--NF---QPPKLKD  233 (267)
T ss_pred             cccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccch--hhHHhhhcc--CC---CCCcccc
Confidence                     112223321   1222567899999999999999999998432211  111111111  00   0111110


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       ....+..+.+++.+||+.+|++||+++++++
T Consensus       234 -~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         234 -KMKWSNSFHHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             -cCCCCHHHHHHHHHHccCCchhCcCHHHHhc
Confidence             0112346889999999999999999998874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=2.1e-33  Score=293.80  Aligned_cols=246  Identities=14%  Similarity=0.153  Sum_probs=178.3

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC---cceE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRM  377 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~---~~~~  377 (592)
                      ..+.||+|+||.||++.. .++..||+|.+......   ....+.+.+|+++++.++|+||+++++++.....   ...+
T Consensus         4 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           4 PDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQN---LVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             ccceeeeCCCEEEEEEEECCCCCEEEEEeccccccc---hHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            347899999999999995 47899999987532211   2234678899999999999999999999876431   1468


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +|+||+. ++|.+++.  ....+++.....++.+++.||+|||+.+  ++||||||+|||++.++.+||+|||+++....
T Consensus        81 lv~e~~~-~~l~~~~~--~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~  155 (372)
T cd07853          81 VVTELMQ-SDLHKIIV--SPQPLSSDHVKVFLYQILRGLKYLHSAG--ILHRDIKPGNLLVNSNCVLKICDFGLARVEEP  155 (372)
T ss_pred             EEeeccc-cCHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCChHHEEECCCCCEEeccccceeeccc
Confidence            9999996 57877775  3356899999999999999999999998  99999999999999999999999999876432


Q ss_pred             hhh----------hhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHh---------------
Q 007711          458 AEM----------AATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL---------------  511 (592)
Q Consensus       458 ~~~----------~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~---------------  511 (592)
                      ...          .+.+++.... ..++.++|||||||++|||+||+.||....  ..+......               
T Consensus       156 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~~i~~~~g~~~~~~~~~~~  233 (372)
T cd07853         156 DESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQS--PIQQLDLITDLLGTPSLEAMRSAC  233 (372)
T ss_pred             CccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHcCCCCHHHHHHhh
Confidence            111          1222222221 236788999999999999999999995332  111111110               


Q ss_pred             --------cCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          512 --------SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       512 --------~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                              ........  ............+++.+++.+||+.||++|||+.|++.
T Consensus       234 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  287 (372)
T cd07853         234 EGARAHILRGPHKPPS--LPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALA  287 (372)
T ss_pred             HHHHHHHHhCCCCCCc--hHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhc
Confidence                    00000000  00000111223457889999999999999999999986

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=1.1e-32  Score=274.27  Aligned_cols=240  Identities=19%  Similarity=0.326  Sum_probs=187.0

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... +++.+++|.+.....    ....+++.+|++++++++|+||+++++++....  ..++++
T Consensus         5 ~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv~   78 (265)
T cd06605           5 YLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEIN----EAIQKQILRELDILHKCNSPYIVGFYGAFYNNG--DISICM   78 (265)
T ss_pred             HHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccC----hHHHHHHHHHHHHHHHCCCCchhhhheeeecCC--EEEEEE
Confidence            4567999999999999975 588899998765432    234577899999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      ||+++++|.+++.... ..++.....+++.+++.|++|||+ .+  ++|+||||+||++++++.+||+|||.+.......
T Consensus        79 e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~--i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~  155 (265)
T cd06605          79 EYMDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHEKHK--IIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSL  155 (265)
T ss_pred             EecCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcCCCC--eecCCCCHHHEEECCCCCEEEeecccchhhHHHH
Confidence            9999999999986432 578889999999999999999999 88  9999999999999999999999999987664322


Q ss_pred             h-------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCC---CChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          460 M-------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN---GSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       460 ~-------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      .       .+.+++......++.++||||||+++|||++|+.||....   ....+..........       +...  .
T Consensus       156 ~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~  226 (265)
T cd06605         156 AKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPP-------PRLP--S  226 (265)
T ss_pred             hhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCC-------CCCC--h
Confidence            1       2233343334457889999999999999999999995432   222333333222210       1111  1


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ......+.+++.+||..+|++||++.+++.
T Consensus       227 ~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  256 (265)
T cd06605         227 GKFSPDFQDFVNLCLIKDPRERPSYKELLE  256 (265)
T ss_pred             hhcCHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence            114456889999999999999999999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.1e-32  Score=277.73  Aligned_cols=248  Identities=20%  Similarity=0.270  Sum_probs=185.4

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+.||.|++|.||++... ++..+++|.+.....    .....++.+|++++++++|+||++++++|........++||
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           5 ELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPN----PDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             EEEEeccCCceEEEEEEECCCCeEEEEEEEecCCc----hHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            3478999999999999974 578889988764321    23456799999999999999999999998765444578999


Q ss_pred             eeCCCCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          381 EYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||+++++|.+++..  .....+++.....++.+++.||+|||+.+  ++|+||+|+||++++++.++|+|||++......
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~--i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~  158 (287)
T cd06621          81 EYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRK--IIHRDIKPSNILLTRKGQVKLCDFGVSGELVNS  158 (287)
T ss_pred             EecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEecCCeEEEeecccccccccc
Confidence            99999999887653  23456788899999999999999999998  999999999999999999999999998754321


Q ss_pred             h-------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCC---CChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          459 E-------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN---GSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       459 ~-------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      .       ..+.+++......++.++|||||||++|||+||+.||....   ....+........ .. ..+.+.  ...
T Consensus       159 ~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~--~~~  234 (287)
T cd06621         159 LAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNM-PN-PELKDE--PGN  234 (287)
T ss_pred             ccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcC-Cc-hhhccC--CCC
Confidence            1       11223333333456889999999999999999999996442   1222222222211 10 011100  000


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+..+.+++.+||+.+|++|||+.|+++
T Consensus       235 ~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~  265 (287)
T cd06621         235 GIKWSEEFKDFIKQCLEKDPTRRPTPWDMLE  265 (287)
T ss_pred             CCchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence            1123467899999999999999999999986

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=3.4e-33  Score=290.84  Aligned_cols=239  Identities=18%  Similarity=0.244  Sum_probs=176.8

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... ++..+|+|++.......  ......+.+|++++.+++|+||+++++++...+  ..++||
T Consensus         5 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~--~~~lv~   80 (360)
T cd05627           5 SLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLE--KEQVAHIRAERDILVEADGAWVVKMFYSFQDKR--NLYLIM   80 (360)
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhh--hhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC--EEEEEE
Confidence            3478999999999999864 58899999886432211  223567888999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh--
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~--  458 (592)
                      ||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus        81 E~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~~L~~lH~~g--ivHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~  156 (360)
T cd05627          81 EFLPGGDMMTLLMK--KDTLSEEATQFYIAETVLAIDAIHQLG--FIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHR  156 (360)
T ss_pred             eCCCCccHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEccCCCHHHEEECCCCCEEEeeccCCcccccccc
Confidence            99999999999863  346889999999999999999999999  999999999999999999999999998754211  


Q ss_pred             ------------------------------------------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcc
Q 007711          459 ------------------------------------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPY  496 (592)
Q Consensus       459 ------------------------------------------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~  496 (592)
                                                                ...+.+||......++.++|||||||++|||+||+.||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf  236 (360)
T cd05627         157 TEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPF  236 (360)
T ss_pred             cccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCC
Confidence                                                      01122222222334688999999999999999999999


Q ss_pred             cCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCC---HHHHH
Q 007711          497 LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT---MRDIA  558 (592)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs---~~ev~  558 (592)
                      ..  ....+............  .+++. .    ....++.+++.+|+ .||.+|++   ++|+.
T Consensus       237 ~~--~~~~~~~~~i~~~~~~~--~~p~~-~----~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~  291 (360)
T cd05627         237 CS--ETPQETYRKVMNWKETL--VFPPE-V----PISEKAKDLILRFC-TDSENRIGSNGVEEIK  291 (360)
T ss_pred             CC--CCHHHHHHHHHcCCCce--ecCCC-C----CCCHHHHHHHHHhc-cChhhcCCCCCHHHHh
Confidence            53  23333333322211111  01111 1    12345778887766 49999996   45554

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-34  Score=291.77  Aligned_cols=254  Identities=22%  Similarity=0.279  Sum_probs=190.9

Q ss_pred             ccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeC
Q 007711          305 VIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYA  383 (592)
Q Consensus       305 ~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~  383 (592)
                      +||+|.||+||.|+. .+...+|||.+..+..     ...+-+.+||.+.+.++|.|||+++|.|.+.+  ..-|.||.+
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekds-----r~~QPLhEEIaLH~~LrHkNIVrYLGs~senG--f~kIFMEqV  654 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDS-----REVQPLHEEIALHSTLRHKNIVRYLGSVSENG--FFKIFMEQV  654 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccc-----hhhccHHHHHHHHHHHhhHhHHHHhhccCCCC--eEEEEeecC
Confidence            699999999999995 4567788887755433     23566889999999999999999999998877  567999999


Q ss_pred             CCCCchhhccccCCCCC-CHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc-CCCceEEecCCcchhhhhhh--
Q 007711          384 PNGTLFEHIHIKESEHL-DWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWNEIAMAE--  459 (592)
Q Consensus       384 ~~gsL~~~l~~~~~~~l-~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~-~~~~~ki~DfGla~~~~~~~--  459 (592)
                      |+|||.++++.+-+.-- ...+.--+..||.+||.|||+..  |||||||-.|+|++ -.|.+||+|||.++.+..-.  
T Consensus       655 PGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~--IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~  732 (1226)
T KOG4279|consen  655 PGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENK--IVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPC  732 (1226)
T ss_pred             CCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcc--eeeccccCCcEEEeeccceEEecccccchhhccCCcc
Confidence            99999999986543211 44556667899999999999999  99999999999998 57899999999998775221  


Q ss_pred             -hhhcccccCCCCC--------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 -MAATSKKLSSAPS--------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 -~~~~~~~~~~~~~--------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                       ..-+.+.-+++|+        |..++|||||||++.||.||++||..-+..-...++   -+..       ...+..|+
T Consensus       733 TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFk---VGmy-------KvHP~iPe  802 (1226)
T KOG4279|consen  733 TETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFK---VGMY-------KVHPPIPE  802 (1226)
T ss_pred             ccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhh---hcce-------ecCCCCcH
Confidence             1112223344444        788999999999999999999999432221111111   0111       11235678


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCCCCccCcc
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPL  579 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~~p~~~~~  579 (592)
                      +...+...++.+|+..||.+||++.++++  +..+.-.+....|.+++.
T Consensus       803 elsaeak~FilrcFepd~~~R~sA~~LL~--DpFlq~~~kk~r~~ls~~  849 (1226)
T KOG4279|consen  803 ELSAEAKNFILRCFEPDPCDRPSAKDLLQ--DPFLQHNNKKPRPKLSLN  849 (1226)
T ss_pred             HHHHHHHHHHHHHcCCCcccCccHHHhcc--CcccccCCCCCCCCCCcc
Confidence            88889999999999999999999998875  334444445555555543

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=1.2e-32  Score=274.05  Aligned_cols=244  Identities=19%  Similarity=0.305  Sum_probs=184.1

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||.|+||.||+|... ++..+++|.+......    ...+.+.+|++.++.++|+||+++++.+...+  ..++|
T Consensus         4 ~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~iv   77 (267)
T cd06610           4 ELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQ----TSVDELRKEVQAMSQCNHPNVVKYYTSFVVGD--ELWLV   77 (267)
T ss_pred             eeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcc----hHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCC--EEEEE
Confidence            34578999999999999954 6788889887533221    24567999999999999999999999998776  67999


Q ss_pred             EeeCCCCCchhhccccCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKES-EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~-~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      +||+++++|.++++.... ..+++.....++.+++.|++|||+.+  ++||||||+||++++++.+||+|||++......
T Consensus        78 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~--i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~  155 (267)
T cd06610          78 MPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNG--QIHRDIKAGNILLGEDGSVKIADFGVSASLADG  155 (267)
T ss_pred             EeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHhEEEcCCCCEEEcccchHHHhccC
Confidence            999999999999875332 56899999999999999999999998  999999999999999999999999998766432


Q ss_pred             hhh-------------hcccccCCCC-CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          459 EMA-------------ATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       459 ~~~-------------~~~~~~~~~~-~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ...             +.+++..... ..+.++|||||||++|||+||+.||....  ..+...........   .....
T Consensus       156 ~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~--~~~~~~~~~~~~~~---~~~~~  230 (267)
T cd06610         156 GDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYP--PMKVLMLTLQNDPP---SLETG  230 (267)
T ss_pred             ccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccC--hhhhHHHHhcCCCC---CcCCc
Confidence            211             1122222212 36778999999999999999999995322  11222222221100   00000


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        ......+..+.+++.+||+.||++||++.++++
T Consensus       231 --~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         231 --ADYKKYSKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             --cccccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence              001233467889999999999999999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.4e-33  Score=285.24  Aligned_cols=242  Identities=19%  Similarity=0.288  Sum_probs=196.8

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ...+.+|+|+||.++..+.+ +++.+++|.+......+   ...+...+|+.++++++|||||.+.+.+..++. ..+||
T Consensus         7 e~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~---~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~-~l~Iv   82 (426)
T KOG0589|consen    7 EVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTE---PERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQ-LLCIV   82 (426)
T ss_pred             hhhhhcCccccchhhhhhhccCCceEEEEEEeccccCc---hhhHHHHHHHHHHHhccCCCeeeeccchhcCCc-eEEEE
Confidence            34578999999999988753 57789999987765443   334577899999999999999999999988772 37999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |+||+||++.+.+....+..++..+...+..|+..|+.|||+..  |+|||||+.||++..+..+||+|||+|+.+....
T Consensus        83 m~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~--iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~  160 (426)
T KOG0589|consen   83 MEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENR--VLHRDLKCANIFLTKDKKVKLGDFGLAKILNPED  160 (426)
T ss_pred             EeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhh--hhcccchhhhhhccccCceeecchhhhhhcCCch
Confidence            99999999999998766778999999999999999999999888  9999999999999999999999999999886543


Q ss_pred             -h--hhcccccCCCC------CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 -M--AATSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 -~--~~~~~~~~~~~------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                       .  ....+.+++.|      +|..|+||||+||++|||++-+.+|..  .+....+.......      .    ...+.
T Consensus       161 ~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a--~~m~~Li~ki~~~~------~----~Plp~  228 (426)
T KOG0589|consen  161 SLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKA--SNMSELILKINRGL------Y----SPLPS  228 (426)
T ss_pred             hhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCc--cchHHHHHHHhhcc------C----CCCCc
Confidence             1  12233455555      489999999999999999999999943  34444444444332      1    22344


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      ....++..++..|++.+|+.||++.+++..
T Consensus       229 ~ys~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  229 MYSSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             cccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence            445679999999999999999999999875

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.9e-33  Score=285.06  Aligned_cols=244  Identities=19%  Similarity=0.249  Sum_probs=179.0

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+++.. ++..+|+|++.......  ....+.|.+|+.++..++|+||+++++++...+  ..++||
T Consensus         5 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv~   80 (331)
T cd05597           5 ILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLK--RAETACFREERDVLVNGDRRWITNLHYAFQDEN--NLYLVM   80 (331)
T ss_pred             EEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhh--hhhHHHHHHHHHHHHhCCCCCCCceEEEEecCC--eEEEEE
Confidence            4578999999999999964 58899999886422111  223456889999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++.. ....+++.....++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...... 
T Consensus        81 e~~~g~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~  157 (331)
T cd05597          81 DYYVGGDLLTLLSK-FEDRLPEDMARFYLAEMVLAIDSVHQLG--YVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGT  157 (331)
T ss_pred             ecCCCCcHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCC--eEECCCCHHHEEECCCCCEEEEECCceeecCCCCC
Confidence            99999999999863 2346888899999999999999999999  9999999999999999999999999986543211 


Q ss_pred             ---------hhhcccccCC-----CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          460 ---------MAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       460 ---------~~~~~~~~~~-----~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                               ..+.+++...     ...++.++|||||||++|||++|+.||..  .+..+.............  +.+. 
T Consensus       158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~--~~~~~~~~~i~~~~~~~~--~~~~-  232 (331)
T cd05597         158 VQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYA--ESLVETYGKIMNHKEHFQ--FPPD-  232 (331)
T ss_pred             ccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCC--CCHHHHHHHHHcCCCccc--CCCc-
Confidence                     1122222221     12356789999999999999999999943  333333333332211111  1111 


Q ss_pred             CCCCHHHHHHHHHHHHHhccc--CCCCCCCHHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRA--DPEKRPTMRDIAAI  560 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~--dP~~RPs~~ev~~~  560 (592)
                         ....+..+.+++.+|+..  ++..||+++++++.
T Consensus       233 ---~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~h  266 (331)
T cd05597         233 ---VTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDH  266 (331)
T ss_pred             ---cCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence               112335677888886654  33447888888764

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=5.2e-33  Score=278.69  Aligned_cols=237  Identities=16%  Similarity=0.254  Sum_probs=183.1

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ..+.+.||+|+||.||+|.. .++..+|+|.......    ......|.+|++++++++|+||+++++++....  ..++
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~l   79 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA----EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDT--KLWI   79 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccc----hHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCC--eEEE
Confidence            34457899999999999986 4678899997643221    223567899999999999999999999998876  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |+||+++|+|.+++..   ..+++.....++.+++.|+.|||+.+  ++|+||||+||+++.++.++|+|||++......
T Consensus        80 v~e~~~~~~l~~~i~~---~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~  154 (277)
T cd06641          80 IMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSEK--KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT  154 (277)
T ss_pred             EEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHccCC--eecCCCCHHhEEECCCCCEEEeecccceecccc
Confidence            9999999999998853   35789999999999999999999998  999999999999999999999999998755322


Q ss_pred             hh---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          459 EM---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       459 ~~---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      ..         .+.+++.......+.++|||||||++|||+||+.||....  ...+....... .         .....
T Consensus       155 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~--~~~~~~~~~~~-~---------~~~~~  222 (277)
T cd06641         155 QIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELH--PMKVLFLIPKN-N---------PPTLE  222 (277)
T ss_pred             hhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccc--hHHHHHHHhcC-C---------CCCCC
Confidence            11         1122333333345778999999999999999999994322  22222221111 0         01112


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...+..+.+++.+||+.+|.+||++.++++
T Consensus       223 ~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  252 (277)
T cd06641         223 GNYSKPLKEFVEACLNKEPSFRPTAKELLK  252 (277)
T ss_pred             cccCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            233456889999999999999999999988

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=8.4e-33  Score=281.23  Aligned_cols=244  Identities=18%  Similarity=0.190  Sum_probs=184.8

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... .+..|++|.+.......  ......+.+|+++++.++|+||+++++.+....  ..++||
T Consensus         5 ~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv~   80 (305)
T cd05609           5 TIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLIL--RNQIQQVFVERDILTFAENPFVVSMFCSFETKR--HLCMVM   80 (305)
T ss_pred             EeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhh--HHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCC--EEEEEE
Confidence            4578999999999999964 57889999876432211  223457889999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh--
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~--  458 (592)
                      ||+++|+|.+++...  ..+++.....++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||+++.....  
T Consensus        81 e~~~g~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~  156 (305)
T cd05609          81 EYVEGGDCATLLKNI--GALPVDMARMYFAETVLALEYLHNYG--IVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLT  156 (305)
T ss_pred             ecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCchHHEEECCCCCEEEeeCCCccccCcCcc
Confidence            999999999998643  46889999999999999999999998  999999999999999999999999998642100  


Q ss_pred             ----------------------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC
Q 007711          459 ----------------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP  516 (592)
Q Consensus       459 ----------------------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~  516 (592)
                                            ...+.+++......++.++|||||||++||++||+.||..  ....++..........
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~--~~~~~~~~~~~~~~~~  234 (305)
T cd05609         157 TNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFG--DTPEELFGQVISDDIE  234 (305)
T ss_pred             ccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhcccC
Confidence                                  0012223332333468899999999999999999999953  2333443333322111


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                           .+..   ....+..+.+++.+||+.+|++||++.++.+.|+.
T Consensus       235 -----~~~~---~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~  273 (305)
T cd05609         235 -----WPEG---DEALPADAQDLISRLLRQNPLERLGTGGAFEVKQH  273 (305)
T ss_pred             -----CCCc---cccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence                 1110   11234568899999999999999998777776665

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=1.6e-32  Score=272.84  Aligned_cols=240  Identities=20%  Similarity=0.312  Sum_probs=183.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+.||+|+||.||+|... ++..+++|.+......   ....+.+..|++++++++|+||+++++++...+  ..++|+
T Consensus         4 ~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--~~~lv~   78 (264)
T cd06626           4 RGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND---PKTIKEIADEMKVLELLKHPNLVKYYGVEVHRE--KVYIFM   78 (264)
T ss_pred             eeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccc---hHHHHHHHHHHHHHHhCCCCChhheeeeEecCC--EEEEEE
Confidence            4578999999999999864 6889999988654322   345678999999999999999999999988776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++++|.++++..  ..+++..+..++.++++|++|||+.+  ++|+||+|+||++++++.+||+|||++........
T Consensus        79 e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~--i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~  154 (264)
T cd06626          79 EYCSGGTLEELLEHG--RILDEHVIRVYTLQLLEGLAYLHSHG--IVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTT  154 (264)
T ss_pred             ecCCCCcHHHHHhhc--CCCChHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEEcccccccccCCCCC
Confidence            999999999998643  45788999999999999999999998  99999999999999999999999999876542211


Q ss_pred             -------------hhcccccCCCC---CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          461 -------------AATSKKLSSAP---SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       461 -------------~~~~~~~~~~~---~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                                   .+.+++.....   ..+.++||||||+++||+++|+.||..... ...........  .     .+.
T Consensus       155 ~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~-~~~~~~~~~~~--~-----~~~  226 (264)
T cd06626         155 TMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDN-EFQIMFHVGAG--H-----KPP  226 (264)
T ss_pred             cccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcc-hHHHHHHHhcC--C-----CCC
Confidence                         11222222221   267889999999999999999999953321 11111111111  0     111


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ... .......+.+++.+||+.+|++||++.|++.
T Consensus       227 ~~~-~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         227 IPD-SLQLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             CCc-ccccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            111 1112456889999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=7.7e-33  Score=279.49  Aligned_cols=240  Identities=21%  Similarity=0.303  Sum_probs=179.5

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCC---cce
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEP---FTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~---~~~  376 (592)
                      +.+.||+|+||.||++.. .+++.+++|.+....      ....++.+|+.++.++ +|+|++++++++...+.   ...
T Consensus        26 ~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~------~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~   99 (291)
T cd06639          26 IIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS------DVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQL   99 (291)
T ss_pred             EEEEeecCCCeEEEEEEECCCCCEEEEEEecccc------cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCee
Confidence            347899999999999996 468889999875321      1245678899999998 89999999999875431   246


Q ss_pred             EEEEeeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          377 MMVFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ++|+||+++|+|.++++..  ....+++..+..++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++.
T Consensus       100 ~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dlkp~nili~~~~~~kl~dfg~~~~  177 (291)
T cd06639         100 WLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNR--IIHRDVKGNNILLTTEGGVKLVDFGVSAQ  177 (291)
T ss_pred             EEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHEEEcCCCCEEEeecccchh
Confidence            8999999999999987532  3456899999999999999999999998  99999999999999999999999999876


Q ss_pred             hhhhhhh---hcccccCCCCC-----------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          455 IAMAEMA---ATSKKLSSAPS-----------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       455 ~~~~~~~---~~~~~~~~~~~-----------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      .......   ......+.+|+           ++.++|||||||++|||+||+.||...  ...+.........  ...+
T Consensus       178 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~--~~~~~~~~~~~~~--~~~~  253 (291)
T cd06639         178 LTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDM--HPVKTLFKIPRNP--PPTL  253 (291)
T ss_pred             cccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCC--cHHHHHHHHhcCC--CCCC
Confidence            5322110   11112233333           478999999999999999999999432  2111111211111  1111


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+      ++.....+.+++.+||+.+|++||++.|+++
T Consensus       254 ~~------~~~~~~~l~~li~~~l~~~p~~Rps~~~il~  286 (291)
T cd06639         254 LH------PEKWCRSFNHFISQCLIKDFEARPSVTHLLE  286 (291)
T ss_pred             Cc------ccccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            11      2223356899999999999999999999875

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.4e-33  Score=287.42  Aligned_cols=234  Identities=16%  Similarity=0.212  Sum_probs=172.9

Q ss_pred             cCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC---CCCceeeeeEEEecCCCcceEEEEe
Q 007711          306 IGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV---NHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       306 lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l---~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      ||+|+||.||+|+.. ++..||+|++.......  ......+..|..++...   +||||+++++++....  ..++|||
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~--~~~lv~e   76 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVA--KKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDS--DLYLVTD   76 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhh--hhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCC--eEEEEEc
Confidence            799999999999964 58899999886432211  11233455666776655   6999999999988776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh---
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~---  458 (592)
                      |+++|+|.+++..  ...+++.....++.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++.....   
T Consensus        77 ~~~~g~L~~~l~~--~~~~~~~~~~~~~~qil~al~~LH~~~--ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~  152 (330)
T cd05586          77 YMSGGELFWHLQK--EGRFSEDRAKFYIAELVLALEHLHKYD--IVYRDLKPENILLDATGHIALCDFGLSKANLTDNKT  152 (330)
T ss_pred             CCCCChHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCC
Confidence            9999999988863  356889999999999999999999998  999999999999999999999999998753211   


Q ss_pred             ------hhhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          459 ------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       459 ------~~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                            ...+.+|+... ...++.++|||||||++|||+||+.||..  ....+.......+...+.   .       ..
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~--~~~~~~~~~i~~~~~~~~---~-------~~  220 (330)
T cd05586         153 TNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYA--EDTQQMYRNIAFGKVRFP---K-------NV  220 (330)
T ss_pred             ccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCC--CCHHHHHHHHHcCCCCCC---C-------cc
Confidence                  11223333222 22367889999999999999999999953  233333333322211110   0       11


Q ss_pred             HHHHHHHHHHHhcccCCCCCCC----HHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPT----MRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs----~~ev~~  559 (592)
                      ....+.+++.+||+.||++||+    +.++++
T Consensus       221 ~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~  252 (330)
T cd05586         221 LSDEGRQFVKGLLNRNPQHRLGAHRDAVELKE  252 (330)
T ss_pred             CCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhc
Confidence            2346789999999999999995    555543

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=1.3e-32  Score=273.10  Aligned_cols=241  Identities=21%  Similarity=0.299  Sum_probs=185.5

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||.|+||.||++.. .++..+++|.+.....   .....+++..|++++++++|+||+++++++........+++|
T Consensus         4 ~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           4 VLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNM---TEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             eeeeeccCCCeEEEEeeecCCCCEEEEEEEecccC---CHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            446799999999999985 4678899988754322   233456788999999999999999999988754433578999


Q ss_pred             eeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhh-----cCCCCeEeeCcCCCCeEEcCCCceEEecCCcch
Q 007711          381 EYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMH-----QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  453 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH-----~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~  453 (592)
                      ||+++++|.+++...  ....+++.....++.+++.|++|||     +.+  ++|+||||+||++++++.+||+|||++.
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~--i~h~dl~p~nili~~~~~~kl~d~g~~~  158 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNT--VLHRDLKPANIFLDANNNVKLGDFGLAK  158 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCc--ceecCCCHHHEEEecCCCEEEecccccc
Confidence            999999999988642  2457899999999999999999999     666  9999999999999999999999999988


Q ss_pred             hhhhhhh---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          454 EIAMAEM---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       454 ~~~~~~~---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      .......         .+.+++......++.++||||||+++|||++|+.||....  ..+.........          
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~----------  226 (265)
T cd08217         159 ILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN--QLQLASKIKEGK----------  226 (265)
T ss_pred             cccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC--HHHHHHHHhcCC----------
Confidence            7643221         1122333333336788999999999999999999995432  333333222211          


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+...+..+.+++.+||+.+|++||++.+|++
T Consensus       227 ~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~  261 (265)
T cd08217         227 FRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQ  261 (265)
T ss_pred             CCCCccccCHHHHHHHHHHccCCcccCCCHHHHhh
Confidence            11223334467899999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=6e-33  Score=274.65  Aligned_cols=239  Identities=19%  Similarity=0.337  Sum_probs=184.4

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... +|..+++|.+......   ....+.+.+|++++++++|+||+++++.+....  ..++|+
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~--~~~lv~   78 (257)
T cd08225           4 IIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMP---VKEKEASKKEVILLAKMKHPNIVTFFASFQENG--RLFIVM   78 (257)
T ss_pred             EEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhcc---chhhHHHHHHHHHHHhCCCCChhhhhheeccCC--eEEEEE
Confidence            4578999999999999975 5788999987653221   123457889999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC-ceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~-~~ki~DfGla~~~~~~~  459 (592)
                      ||+++++|.+++.......+++..+..++.+++.|++|||+.+  ++|+||||+||++++++ .+||+|||.+.......
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~  156 (257)
T cd08225          79 EYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRK--ILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSM  156 (257)
T ss_pred             ecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccccCCHHHEEEcCCCCeEEecccccchhccCCc
Confidence            9999999999987555556899999999999999999999998  99999999999999885 56999999987654321


Q ss_pred             h---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 M---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 ~---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                      .         .+.+++......++.++|||||||++||+++|+.||..  ....++........  .    .+    ...
T Consensus       157 ~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~--~----~~----~~~  224 (257)
T cd08225         157 ELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEG--NNLHQLVLKICQGY--F----AP----ISP  224 (257)
T ss_pred             ccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHhccc--C----CC----CCC
Confidence            1         11222222222367899999999999999999999943  23344443332221  1    11    111


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+..+.+++.+||+.+|++||++.|+++
T Consensus       225 ~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  253 (257)
T cd08225         225 NFSRDLRSLISQLFKVSPRDRPSITSILK  253 (257)
T ss_pred             CCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence            22356889999999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=6.7e-33  Score=289.13  Aligned_cols=247  Identities=16%  Similarity=0.185  Sum_probs=177.8

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cc
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~  375 (592)
                      .+.+.||+|+||.||++.. ..+..+|||.+......   ....+.+.+|+.+++.++|+||+++++++.....    ..
T Consensus        27 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~~  103 (364)
T cd07875          27 QNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQN---QTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQD  103 (364)
T ss_pred             eEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccC---chhHHHHHHHHHHHHhcCCCCccccceeecccccccccCe
Confidence            3457899999999999985 45788999988643221   2334678899999999999999999998764321    14


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++ +|.+.+.    ..+++..+..++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++..
T Consensus       104 ~~lv~e~~~~-~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~  176 (364)
T cd07875         104 VYIVMELMDA-NLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDCTLKILDFGLARTA  176 (364)
T ss_pred             EEEEEeCCCC-CHHHHHH----hcCCHHHHHHHHHHHHHHHHHHhhCC--eecCCCCHHHEEECCCCcEEEEeCCCcccc
Confidence            6899999965 6776664    24788899999999999999999998  999999999999999999999999999765


Q ss_pred             hhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcC--------------
Q 007711          456 AMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG--------------  513 (592)
Q Consensus       456 ~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~--------------  513 (592)
                      ....        ..+.+|+......++.++|||||||++|||+||+.||...+  ..+.....+..              
T Consensus       177 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  254 (364)
T cd07875         177 GTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTD--HIDQWNKVIEQLGTPCPEFMKKLQP  254 (364)
T ss_pred             CCCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHhcCCCCHHHHHhhhH
Confidence            3221        12223333333446889999999999999999999995322  11111111110              


Q ss_pred             --------CCCCc-----cccCCC----CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          514 --------VQPLQ-----QFVDPT----LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       514 --------~~~~~-----~~~~~~----~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                              .....     ......    ...........+.+++.+|++.||.+|||+.|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~  317 (364)
T cd07875         255 TVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ  317 (364)
T ss_pred             HHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence                    00000     000000    00011112346889999999999999999999987

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=1.7e-32  Score=277.91  Aligned_cols=235  Identities=18%  Similarity=0.268  Sum_probs=180.9

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      ..||+|+||.||++.. .++..+++|.+......     ..+.+.+|+.++..++||||+++++++...+  ..++|+||
T Consensus        27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~-----~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~--~~~iv~e~   99 (297)
T cd06659          27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQ-----RRELLFNEVVIMRDYQHQNVVEMYKSYLVGE--ELWVLMEF   99 (297)
T ss_pred             hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccc-----hHHHHHHHHHHHHhCCCCchhhhhhheeeCC--eEEEEEec
Confidence            4699999999999986 46889999988543321     2456889999999999999999999998776  67999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh---
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---  459 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~---  459 (592)
                      +++++|.+++..   ..+++..+..++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||+++......   
T Consensus       100 ~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~~--ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~  174 (297)
T cd06659         100 LQGGALTDIVSQ---TRLNEEQIATVCESVLQALCYLHSQG--VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKR  174 (297)
T ss_pred             CCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHeEEccCCcEEEeechhHhhcccccccc
Confidence            999999987743   45789999999999999999999998  9999999999999999999999999987543211   


Q ss_pred             ------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          460 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       460 ------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                            ..+.+++......++.++|||||||++|||++|+.||....  ..+.........  ...     . .......
T Consensus       175 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~--~~~~~~~~~~~~--~~~-----~-~~~~~~~  244 (297)
T cd06659         175 KSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDS--PVQAMKRLRDSP--PPK-----L-KNAHKIS  244 (297)
T ss_pred             cceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHhccC--CCC-----c-cccCCCC
Confidence                  11233343334446889999999999999999999995322  222222111110  000     0 0111223


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      ..+.+++.+||+.+|++||++.++++.
T Consensus       245 ~~l~~~i~~~l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         245 PVLRDFLERMLTREPQERATAQELLDH  271 (297)
T ss_pred             HHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence            468899999999999999999999883

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=5.6e-33  Score=288.72  Aligned_cols=248  Identities=17%  Similarity=0.248  Sum_probs=177.6

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cce
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~~  376 (592)
                      ..+.||+|+||.||++.. ..+..+|||.+......   ....+.+.+|+.+++.++|+||+++++++.....    ...
T Consensus        21 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   97 (355)
T cd07874          21 NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQN---QTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQDV   97 (355)
T ss_pred             EEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccC---hHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccccee
Confidence            457899999999999985 35789999987543221   2335678889999999999999999998864321    146


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++||||+++ +|.+.+.    ..+++..+..++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus        98 ~lv~e~~~~-~l~~~~~----~~l~~~~~~~~~~qi~~aL~~LH~~g--ivHrDikp~Nill~~~~~~kl~Dfg~~~~~~  170 (355)
T cd07874          98 YLVMELMDA-NLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDCTLKILDFGLARTAG  170 (355)
T ss_pred             EEEhhhhcc-cHHHHHh----hcCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCChHHEEECCCCCEEEeeCcccccCC
Confidence            899999965 6766654    24788889999999999999999998  9999999999999999999999999998653


Q ss_pred             hhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHH---------------------
Q 007711          457 MAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA---------------------  507 (592)
Q Consensus       457 ~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~---------------------  507 (592)
                      ...        ..+.+|+......++.++|||||||++|||++|+.||...+. ...+.                     
T Consensus       171 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (355)
T cd07874         171 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY-IDQWNKVIEQLGTPCPEFMKKLQPTV  249 (355)
T ss_pred             CccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHHHhhcHHH
Confidence            221        112233333333468899999999999999999999953221 11111                     


Q ss_pred             HHHhcCCCCCccccCC-----CC----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          508 ADYLSGVQPLQQFVDP-----TL----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       508 ~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      ..+.........+..+     ..    ..........+.+++.+|++.||++|||+.|+++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~h  311 (355)
T cd07874         250 RNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQH  311 (355)
T ss_pred             HHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcC
Confidence            0111110000000000     00    00111223568899999999999999999999873

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=2.2e-33  Score=282.57  Aligned_cols=247  Identities=20%  Similarity=0.285  Sum_probs=180.6

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|..+ +++.+|+|.+......   ....+.+.+|+++++.++|+||+++++++...+  ..++|+
T Consensus         5 ~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   79 (286)
T cd07846           5 NLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDD---KMVKKIAMREIRMLKQLRHENLVNLIEVFRRKK--RLYLVF   79 (286)
T ss_pred             EeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCc---chhhHHHHHHHHHHHhcCCcchhhHHHhcccCC--eEEEEE
Confidence            4578999999999999975 5889999987543221   124567889999999999999999999998766  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++++|.++...  ...++|.....++.+++.|++|||+.+  ++||||+|+||++++++.+||+|||+++.......
T Consensus        80 e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~  155 (286)
T cd07846          80 EFVDHTVLDDLEKY--PNGLDESRVRKYLFQILRGIEFCHSHN--IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE  155 (286)
T ss_pred             ecCCccHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEECCCCcEEEEeeeeeeeccCCcc
Confidence            99999998877653  235899999999999999999999998  99999999999999999999999999876532211


Q ss_pred             ---------hhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC-------------
Q 007711          461 ---------AATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL-------------  517 (592)
Q Consensus       461 ---------~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~-------------  517 (592)
                               .+.+++... .+.++.++|||||||++|||+||+.||.... ....+. ........+             
T Consensus       156 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  233 (286)
T cd07846         156 VYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDS-DIDQLY-HIIKCLGNLIPRHQEIFQKNPL  233 (286)
T ss_pred             ccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCc-hHHHHH-HHHHHhCCCchhhHHHhccchH
Confidence                     112222221 1235678999999999999999999985332 111111 111000000             


Q ss_pred             -ccccCCCCC------CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          518 -QQFVDPTLS------SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       518 -~~~~~~~~~------~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       .....+...      ......+..+.+++.+||+.+|++||++.++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         234 FAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             hhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence             000000000      001123467899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=1.7e-32  Score=276.95  Aligned_cols=236  Identities=22%  Similarity=0.313  Sum_probs=181.5

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... +++.+++|.+.......  ......+.+|++++++++||||+++++++....  ..++||
T Consensus         5 ~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   80 (290)
T cd05580           5 FIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVK--LKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDS--NLYLVM   80 (290)
T ss_pred             EEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhCCCCCccceeeEEEcCC--eEEEEE
Confidence            4578999999999999964 58899999875432211  223567889999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  ++|+||+|+||++++++.+||+|||+++.......
T Consensus        81 e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qil~~l~~lH~~~--i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~  156 (290)
T cd05580          81 EYVPGGELFSHLRKS--GRFPEPVARFYAAQVVLALEYLHSLD--IVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTY  156 (290)
T ss_pred             ecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHEEECCCCCEEEeeCCCccccCCCCC
Confidence            999999999998643  56889999999999999999999988  99999999999999999999999999887643321


Q ss_pred             h------hcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 007711          461 A------ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  534 (592)
Q Consensus       461 ~------~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (592)
                      .      +.+++.......+.++||||||+++|||+||+.||....  ..+.......+...           ++.....
T Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~~~-----------~~~~~~~  223 (290)
T cd05580         157 TLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDN--PIQIYEKILEGKVR-----------FPSFFSP  223 (290)
T ss_pred             CCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHhcCCcc-----------CCccCCH
Confidence            1      222332222335778999999999999999999995333  22222222221111           1112235


Q ss_pred             HHHHHHHHhcccCCCCCC-----CHHHHH
Q 007711          535 TLGELIKSCVRADPEKRP-----TMRDIA  558 (592)
Q Consensus       535 ~l~~l~~~Cl~~dP~~RP-----s~~ev~  558 (592)
                      .+.+++.+||+.||.+|+     +++|++
T Consensus       224 ~l~~li~~~l~~~p~~R~~~~~~~~~~l~  252 (290)
T cd05580         224 DAKDLIRNLLQVDLTKRLGNLKNGVNDIK  252 (290)
T ss_pred             HHHHHHHHHccCCHHHccCcccCCHHHHH
Confidence            788999999999999999     555554

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=9.4e-33  Score=278.05  Aligned_cols=241  Identities=19%  Similarity=0.287  Sum_probs=177.4

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCC---Ccce
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE---PFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~---~~~~  376 (592)
                      +.+.||+|+||.||++.. .++..+++|.+....      ....++..|+.+++++ +|+||+++++++....   ....
T Consensus        22 ~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~------~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~   95 (286)
T cd06638          22 IIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH------DIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQL   95 (286)
T ss_pred             eeeeeccCCCcEEEEEEECCCCceeEEEeecccc------chHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeE
Confidence            347899999999999986 457889998764321      1235688899999999 6999999999885321   1257


Q ss_pred             EEEEeeCCCCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          377 MMVFEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ++||||+++|+|.++++.  .....+++.....++.+++.|+.|||+.+  ++||||||+||++++++.+||+|||+++.
T Consensus        96 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~nili~~~~~~kl~dfg~~~~  173 (286)
T cd06638          96 WLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNK--TIHRDVKGNNILLTTEGGVKLVDFGVSAQ  173 (286)
T ss_pred             EEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCC--ccccCCCHHhEEECCCCCEEEccCCceee
Confidence            999999999999988753  23456888999999999999999999988  99999999999999999999999999876


Q ss_pred             hhhhhh---hhcccccCCCCC-----------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          455 IAMAEM---AATSKKLSSAPS-----------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       455 ~~~~~~---~~~~~~~~~~~~-----------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      ......   .......+.+|+           ++.++|||||||++|||+||+.||....  ........... . ....
T Consensus       174 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~--~~~~~~~~~~~-~-~~~~  249 (286)
T cd06638         174 LTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLH--PMRALFKIPRN-P-PPTL  249 (286)
T ss_pred             cccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCc--hhHHHhhcccc-C-CCcc
Confidence            532111   011112233443           5779999999999999999999985322  11111111111 0 0011


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      .+      +......+.+++.+||+.||++||++.|+++.
T Consensus       250 ~~------~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~  283 (286)
T cd06638         250 HQ------PELWSNEFNDFIRKCLTKDYEKRPTVSDLLQH  283 (286)
T ss_pred             cC------CCCcCHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence            11      11223468899999999999999999999863

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=4.4e-32  Score=277.45  Aligned_cols=244  Identities=18%  Similarity=0.233  Sum_probs=183.9

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+.||+|+||.||+|.. .++..+++|.+......  ......++.+|++++++++|+|+++++++|....  ..++|+
T Consensus        29 ~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~  104 (317)
T cd06635          29 DLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQ--SNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREH--TAWLVM  104 (317)
T ss_pred             hhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCC--chHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCC--eEEEEE
Confidence            356799999999999996 46889999987543222  2334567899999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||++ |+|.+.+.. ....++|..+..++.+++.|+.|||+.+  ++||||+|+||+++.++.+||+|||++........
T Consensus       105 e~~~-g~l~~~~~~-~~~~l~~~~~~~i~~~i~~~l~~lH~~~--i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~  180 (317)
T cd06635         105 EYCL-GSASDLLEV-HKKPLQEVEIAAITHGALQGLAYLHSHN--MIHRDIKAGNILLTEPGQVKLADFGSASIASPANS  180 (317)
T ss_pred             eCCC-CCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCcccEEECCCCCEEEecCCCccccCCccc
Confidence            9996 578777643 2456899999999999999999999998  99999999999999999999999999875532211


Q ss_pred             -----hhcccccC---CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          461 -----AATSKKLS---SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       461 -----~~~~~~~~---~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                           .+.+++..   ....++.++|||||||++|||++|+.||...  ................         ......
T Consensus       181 ~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~--~~~~~~~~~~~~~~~~---------~~~~~~  249 (317)
T cd06635         181 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM--NAMSALYHIAQNESPT---------LQSNEW  249 (317)
T ss_pred             ccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCc--cHHHHHHHHHhccCCC---------CCCccc
Confidence                 12233322   1233677899999999999999999998432  2222222222211100         011223


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          533 LETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      +..+.+++.+||+.+|++||++.++++.+-..
T Consensus       250 ~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~  281 (317)
T cd06635         250 SDYFRNFVDSCLQKIPQDRPTSEELLKHMFVL  281 (317)
T ss_pred             cHHHHHHHHHHccCCcccCcCHHHHHhChhhh
Confidence            45689999999999999999999998765544

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-34  Score=269.91  Aligned_cols=233  Identities=21%  Similarity=0.329  Sum_probs=192.9

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      .++.++||+|+||.|||+.. ..|+.+|+|.+.+..       ..+++.+|+.+|.+++.+++|+++|.+....  ..++
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s-------DLQEIIKEISIMQQC~S~yVVKYYGSYFK~s--DLWI  105 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT-------DLQEIIKEISIMQQCKSKYVVKYYGSYFKHS--DLWI  105 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccc-------hHHHHHHHHHHHHHcCCchhhhhhhhhccCC--ceEe
Confidence            34567899999999999985 469999999887644       2567899999999999999999999888766  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |||||--|+..+.++.+ ...+.......|..+..+||+|||..+  -+|||||+.|||++.++.+|++|||.+..+...
T Consensus       106 VMEYCGAGSiSDI~R~R-~K~L~E~EIs~iL~~TLKGL~YLH~~~--KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDT  182 (502)
T KOG0574|consen  106 VMEYCGAGSISDIMRAR-RKPLSEQEISAVLRDTLKGLQYLHDLK--KIHRDIKAGNILLNTDGIAKLADFGVAGQLTDT  182 (502)
T ss_pred             ehhhcCCCcHHHHHHHh-cCCccHHHHHHHHHHHHhHHHHHHHHH--HHHhhcccccEEEcccchhhhhhccccchhhhh
Confidence            99999999999999854 467889999999999999999999987  899999999999999999999999999887543


Q ss_pred             hh---hhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCcccc-----CCC
Q 007711          459 EM---AATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV-----DPT  524 (592)
Q Consensus       459 ~~---~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  524 (592)
                      -.   ....+.+|++|+      |..++||||+|++..||..|++||..               ..++..++     .|.
T Consensus       183 MAKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsD---------------IHPMRAIFMIPT~PPP  247 (502)
T KOG0574|consen  183 MAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSD---------------IHPMRAIFMIPTKPPP  247 (502)
T ss_pred             HHhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCccc---------------ccccceeEeccCCCCC
Confidence            21   223456888887      78899999999999999999999932               11222221     111


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .-..++.++.++.++++.|+-..|++|-|+.++++
T Consensus       248 TF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~  282 (502)
T KOG0574|consen  248 TFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCE  282 (502)
T ss_pred             CCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence            12346778889999999999999999999988765

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=1.4e-32  Score=276.17  Aligned_cols=240  Identities=19%  Similarity=0.280  Sum_probs=179.3

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCC----Cc
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE----PF  374 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~----~~  374 (592)
                      .+.+.||+|+||.||+|.. .++..+++|.+....      ....++..|+.++.++ +|+||+++++++....    ..
T Consensus        19 ~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~------~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   92 (282)
T cd06636          19 ELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE------DEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDD   92 (282)
T ss_pred             hhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh------HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCC
Confidence            3457899999999999996 467889998775432      2235688899999998 6999999999986421    12


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..+++|||+++|+|.+++.......+++..+..++.|++.|++|||+.+  ++|+||||+||++++++.+||+|||+++.
T Consensus        93 ~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~--ivH~dl~~~nili~~~~~~~l~dfg~~~~  170 (282)
T cd06636          93 QLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHK--VIHRDIKGQNVLLTENAEVKLVDFGVSAQ  170 (282)
T ss_pred             EEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEEeeCcchhh
Confidence            5789999999999999987655566888889999999999999999998  99999999999999999999999999876


Q ss_pred             hhhhh---------hhhcccccCC-----CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          455 IAMAE---------MAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       455 ~~~~~---------~~~~~~~~~~-----~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      .....         ..+.+++...     ...++.++|||||||++|||+||+.||....  ..+........       
T Consensus       171 ~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~--~~~~~~~~~~~-------  241 (282)
T cd06636         171 LDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMH--PMRALFLIPRN-------  241 (282)
T ss_pred             hhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccC--HHhhhhhHhhC-------
Confidence            53211         1122333221     2236778999999999999999999994322  11111111000       


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+..  .....+..+.+++.+||+.||.+||++.|+++
T Consensus       242 ~~~~~--~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         242 PPPKL--KSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             CCCCC--cccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence            00111  11223457999999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.1e-32  Score=285.07  Aligned_cols=247  Identities=15%  Similarity=0.190  Sum_probs=176.7

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC----Ccce
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE----PFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~----~~~~  376 (592)
                      ..+.||+|+||.||+|.. .++..||||.+......   ....+.+.+|++++++++|+||+++++++....    ....
T Consensus        19 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   95 (343)
T cd07878          19 NLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQS---LIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFNEV   95 (343)
T ss_pred             hheecccCCCeEEEEEEECCCCCEEEEEEeCchhhh---hHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccCcE
Confidence            457899999999999985 46789999987543211   123456788999999999999999999875432    1246


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++++|++ +++|.+++.   ...+++.....++.|++.||+|||+.+  |+||||||+||++++++.+||+|||+++...
T Consensus        96 ~~~~~~~-~~~l~~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~  169 (343)
T cd07878          96 YLVTNLM-GADLNNIVK---CQKLSDEHVQFLIYQLLRGLKYIHSAG--IIHRDLKPSNVAVNEDCELRILDFGLARQAD  169 (343)
T ss_pred             EEEeecC-CCCHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC--eecccCChhhEEECCCCCEEEcCCccceecC
Confidence            8999988 778988774   345899999999999999999999998  9999999999999999999999999988654


Q ss_pred             hhhhhhcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-CCccccC------
Q 007711          457 MAEMAATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-PLQQFVD------  522 (592)
Q Consensus       457 ~~~~~~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~------  522 (592)
                      ...........+.+||       ++.++|||||||++|||++|+.||...+  ..+.......... .......      
T Consensus       170 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (343)
T cd07878         170 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGND--YIDQLKRIMEVVGTPSPEVLKKISSEH  247 (343)
T ss_pred             CCcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHhcchhh
Confidence            3222112222334443       5778999999999999999999995322  1111111110000 0000000      


Q ss_pred             -----CCCCCCC--------HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          523 -----PTLSSFD--------EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       523 -----~~~~~~~--------~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                           ..+...+        ......+.+++.+|++.||++|||+.|++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~  297 (343)
T cd07878         248 ARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALA  297 (343)
T ss_pred             HHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                 0000000        112235789999999999999999999985

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=9.7e-33  Score=293.20  Aligned_cols=241  Identities=11%  Similarity=0.138  Sum_probs=173.4

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... .+..|+||...           ...+.+|++++++++|+|||++++++...+  ..++||
T Consensus       173 i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~-----------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~--~~~lv~  239 (461)
T PHA03211        173 IHRALTPGSEGCVFESSHPDYPQRVVVKAGW-----------YASSVHEARLLRRLSHPAVLALLDVRVVGG--LTCLVL  239 (461)
T ss_pred             EEEEEccCCCeEEEEEEECCCCCEEEEeccc-----------ccCHHHHHHHHHHCCCCCCCcEEEEEEECC--EEEEEE
Confidence            3478999999999999975 47788888532           123668999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh--
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~--  458 (592)
                      ||+. ++|.+++... ...++|..++.|+.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus       240 e~~~-~~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~yLH~~g--IvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~  315 (461)
T PHA03211        240 PKYR-SDLYTYLGAR-LRPLGLAQVTAVARQLLSAIDYIHGEG--IIHRDIKTENVLVNGPEDICLGDFGAACFARGSWS  315 (461)
T ss_pred             EccC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EEECcCCHHHEEECCCCCEEEcccCCceecccccc
Confidence            9994 7898887532 346899999999999999999999998  999999999999999999999999998764321  


Q ss_pred             ---------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCC-----CChHHHHHHHhcCCC----CCccc
Q 007711          459 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN-----GSLEDWAADYLSGVQ----PLQQF  520 (592)
Q Consensus       459 ---------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~-----~~~~~~~~~~~~~~~----~~~~~  520 (592)
                               ...+.+++......++.++|||||||++|||++|..|+....     ......+...+....    .+...
T Consensus       316 ~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~  395 (461)
T PHA03211        316 TPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQH  395 (461)
T ss_pred             cccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCC
Confidence                     112223333333447889999999999999999876653211     111111111111100    00000


Q ss_pred             c----------------CCCCC-CCCH---HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 V----------------DPTLS-SFDE---EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ~----------------~~~~~-~~~~---~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .                .+... ....   .....+.+++.+||+.||.+|||+.|+++
T Consensus       396 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~  454 (461)
T PHA03211        396 AGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLR  454 (461)
T ss_pred             cchHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhh
Confidence            0                00000 0000   11235789999999999999999999986

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3e-33  Score=290.71  Aligned_cols=179  Identities=15%  Similarity=0.166  Sum_probs=144.3

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|+.. .+..||+|.....           ....|+.++++++|+||+++++++....  ..++|
T Consensus        69 ~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~-----------~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv  135 (357)
T PHA03209         69 TVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG-----------TTLIEAMLLQNVNHPSVIRMKDTLVSGA--ITCMV  135 (357)
T ss_pred             EEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc-----------ccHHHHHHHHhCCCCCCcChhheEEeCC--eeEEE
Confidence            44578999999999999975 4667888763211           2346899999999999999999998876  67899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      +||+. |+|.+++.. ....++|..+..|+.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++..... 
T Consensus       136 ~e~~~-~~l~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~  211 (357)
T PHA03209        136 LPHYS-SDLYTYLTK-RSRPLPIDQALIIEKQILEGLRYLHAQR--IIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAP  211 (357)
T ss_pred             EEccC-CcHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEECCCCCEEEecCccccccccCc
Confidence            99994 688888753 3456899999999999999999999998  999999999999999999999999998753211 


Q ss_pred             -------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcc
Q 007711          459 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPY  496 (592)
Q Consensus       459 -------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~  496 (592)
                             ...+.+++......++.++|||||||++|||+++..|+
T Consensus       212 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        212 AFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             ccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence                   11233344444445788999999999999999955443

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=7e-33  Score=278.53  Aligned_cols=248  Identities=18%  Similarity=0.225  Sum_probs=181.2

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||.|++|.||+|... +|..+++|++......   ......+.+|++++++++|+|++++++++....  ..+++|
T Consensus         3 ~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~--~~~iv~   77 (283)
T cd07835           3 KVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETED---EGVPSTAIREISLLKELNHPNIVRLLDVVHSEN--KLYLVF   77 (283)
T ss_pred             hheEecCCCCeEEEEEEEcCCCCEEEEEEeeccccc---ccchhHHHHHHHHHHhcCCCCccCHhheeccCC--eEEEEE
Confidence            3467999999999999864 7899999988654322   123356888999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||++ ++|.+++.......+++..+.+++.++++||+|||+.+  ++||||+|+||++++++.+||+|||+++.......
T Consensus        78 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~--~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~  154 (283)
T cd07835          78 EFLD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHR--VLHRDLKPQNLLIDREGALKLADFGLARAFGVPVR  154 (283)
T ss_pred             eccC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeCCCCCHHHEEEcCCCcEEEeecccccccCCCcc
Confidence            9995 68999886544456899999999999999999999988  99999999999999999999999999876532211


Q ss_pred             ---------hhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC--------------
Q 007711          461 ---------AATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP--------------  516 (592)
Q Consensus       461 ---------~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~--------------  516 (592)
                               .+.+++.. ....++.++|||||||++|||+||+.||....  ..+...........              
T Consensus       155 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (283)
T cd07835         155 TYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDS--EIDQLFRIFRTLGTPDEDVWPGVTSLPD  232 (283)
T ss_pred             ccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCChHHhhhhhhchh
Confidence                     12223322 12234778999999999999999999995322  11111111110000              


Q ss_pred             ----CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          517 ----LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       517 ----~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          ...................+.+++.+||+.||++||+++|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         233 YKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             hhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                0000000001111222356889999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-33  Score=284.14  Aligned_cols=236  Identities=21%  Similarity=0.276  Sum_probs=186.2

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      +.||.|+||.||-++. .+...||||+.....++.  ..--+++.+|+..|.+++|||++.+-||+....  ..+|||||
T Consensus        32 rEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs--~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~--TaWLVMEY  107 (948)
T KOG0577|consen   32 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS--NEKWQDILKEVRFLRQLRHPNTIEYKGCYLREH--TAWLVMEY  107 (948)
T ss_pred             HHhcCCccceeEEeeccCccceeeeeecccccccc--HHHHHHHHHHHHHHHhccCCCcccccceeeccc--hHHHHHHH
Confidence            3599999999999984 567889999876554433  334568999999999999999999999998766  67999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhhhh
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA  462 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~~~  462 (592)
                      | -||-.|++. ....++....+..|+.|...||+|||+.+  .||||||+.|||+.+.+.+|++|||.+......... 
T Consensus       108 C-lGSAsDlle-VhkKplqEvEIAAi~~gaL~gLaYLHS~~--~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAnsF-  182 (948)
T KOG0577|consen  108 C-LGSASDLLE-VHKKPLQEVEIAAITHGALQGLAYLHSHN--RIHRDIKAGNILLSEPGLVKLADFGSASIMAPANSF-  182 (948)
T ss_pred             H-hccHHHHHH-HHhccchHHHHHHHHHHHHHHHHHHHHhh--HHhhhccccceEecCCCeeeeccccchhhcCchhcc-
Confidence            9 568777774 33467888889999999999999999999  999999999999999999999999998776544332 


Q ss_pred             cccccCCCCC---------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          463 TSKKLSSAPS---------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       463 ~~~~~~~~~~---------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                      ..+.||++|+         |+-|+||||+||+..||.-+++|+...+  ...-. .++...      -.|.+.  ..++.
T Consensus       183 vGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMN--AMSAL-YHIAQN------esPtLq--s~eWS  251 (948)
T KOG0577|consen  183 VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN--AMSAL-YHIAQN------ESPTLQ--SNEWS  251 (948)
T ss_pred             cCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCch--HHHHH-HHHHhc------CCCCCC--CchhH
Confidence            3345777776         7889999999999999999999973222  11111 111111      112222  35677


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..++.++..|++.-|.+|||.++++.
T Consensus       252 ~~F~~Fvd~CLqKipqeRptse~ll~  277 (948)
T KOG0577|consen  252 DYFRNFVDSCLQKIPQERPTSEELLK  277 (948)
T ss_pred             HHHHHHHHHHHhhCcccCCcHHHHhh
Confidence            88999999999999999999988765

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-32  Score=280.54  Aligned_cols=241  Identities=20%  Similarity=0.287  Sum_probs=182.7

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... ++..+++|.+.......  ....+.+..|+++++.++|+||+++++++....  ..++||
T Consensus         5 ~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~   80 (316)
T cd05574           5 KIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIK--RNKVKRVLTEQEILATLDHPFLPTLYASFQTET--YLCLVM   80 (316)
T ss_pred             EeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccch--HHHHHHHHHHHHHHHhCCCCCchhheeeeecCC--EEEEEE
Confidence            3467999999999999965 48899999886543221  234567899999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++++|.+++.......+++.....++.++++||+|||+.+  ++|+||||+||+++.++.++|+|||++........
T Consensus        81 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~  158 (316)
T cd05574          81 DYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLG--IVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPP  158 (316)
T ss_pred             EecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCC--eeccCCChHHeEEcCCCCEEEeecchhhccccccc
Confidence            9999999999987555567899999999999999999999998  99999999999999999999999999875432110


Q ss_pred             hh--------------------------------cccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCC
Q 007711          461 AA--------------------------------TSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGS  502 (592)
Q Consensus       461 ~~--------------------------------~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~  502 (592)
                      ..                                .....+++|+      ++.++||||||+++|||++|+.||...+. 
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~-  237 (316)
T cd05574         159 PVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNR-  237 (316)
T ss_pred             ccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCch-
Confidence            00                                0011233333      57789999999999999999999953322 


Q ss_pred             hHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCC----HHHHHH
Q 007711          503 LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT----MRDIAA  559 (592)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs----~~ev~~  559 (592)
                       .+............        .. ....+..+.+++.+||+.||++||+    ++|++.
T Consensus       238 -~~~~~~~~~~~~~~--------~~-~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~  288 (316)
T cd05574         238 -DETFSNILKKEVTF--------PG-SPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQ  288 (316)
T ss_pred             -HHHHHHHhcCCccC--------CC-ccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHc
Confidence             22222222111110        00 1113467999999999999999999    555554

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-33  Score=261.06  Aligned_cols=242  Identities=22%  Similarity=0.349  Sum_probs=188.2

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCC---chhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceE
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDW---PKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~---~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~  377 (592)
                      .+.+|+|..+.|-++.. +.|.+.|+|++........   .....+.-++|+.+|+++ .||+|+++.+++..+.  ..+
T Consensus        22 keilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~s--F~F   99 (411)
T KOG0599|consen   22 KEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDA--FVF   99 (411)
T ss_pred             HHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcc--hhh
Confidence            35799999999988875 4688999998876544332   234456677899999998 6999999999998776  578


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +|+|.|+.|.|+|+|.  ....++.....+|+.++..|++|||..+  ||||||||+|||+|++.++||+|||+++.+..
T Consensus       100 lVFdl~prGELFDyLt--s~VtlSEK~tR~iMrqlfegVeylHa~~--IVHRDLKpENILlddn~~i~isDFGFa~~l~~  175 (411)
T KOG0599|consen  100 LVFDLMPRGELFDYLT--SKVTLSEKETRRIMRQLFEGVEYLHARN--IVHRDLKPENILLDDNMNIKISDFGFACQLEP  175 (411)
T ss_pred             hhhhhcccchHHHHhh--hheeecHHHHHHHHHHHHHHHHHHHHhh--hhhcccChhheeeccccceEEeccceeeccCC
Confidence            9999999999999996  4467888889999999999999999999  99999999999999999999999999998865


Q ss_pred             hhh----h----hcccc------cCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          458 AEM----A----ATSKK------LSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       458 ~~~----~----~~~~~------~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      +..    +    +.+|+      +-..|.|+.+.|+|+.||++|.|+.|..||....  ..-..+-++.+...+   -.|
T Consensus       176 GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRk--QmlMLR~ImeGkyqF---~sp  250 (411)
T KOG0599|consen  176 GEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRK--QMLMLRMIMEGKYQF---RSP  250 (411)
T ss_pred             chhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHH--HHHHHHHHHhccccc---CCc
Confidence            432    1    12222      2245668999999999999999999999994211  011112222332221   122


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .    ..+....+.+++.+|++.||.+|.|++|++.
T Consensus       251 e----Wadis~~~KdLIsrlLqVdp~~Ritake~La  282 (411)
T KOG0599|consen  251 E----WADISATVKDLISRLLQVDPTKRITAKEALA  282 (411)
T ss_pred             c----hhhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence            2    2334457899999999999999999999876

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=1.2e-32  Score=278.36  Aligned_cols=234  Identities=17%  Similarity=0.290  Sum_probs=179.3

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      ..||+|+||.||++.. .++..+++|.+....     ....+.+.+|+..++.++|+||+++++.+...+  ..++||||
T Consensus        28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~--~~~lv~e~  100 (292)
T cd06658          28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRK-----QQRRELLFNEVVIMRDYHHENVVDMYNSYLVGD--ELWVVMEF  100 (292)
T ss_pred             hcccCCCCeEEEEEEECCCCCEEEEEEEecch-----HHHHHHHHHHHHHHHhCCCCcHHHHHHheecCC--eEEEEEeC
Confidence            4699999999999986 468899999875432     123566889999999999999999999988776  67999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh---
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---  459 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~---  459 (592)
                      +++++|.+++..   ..+++.....++.+++.|++|||+.+  ++||||||+||++++++.+||+|||++.......   
T Consensus       101 ~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~~l~~LH~~~--ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~  175 (292)
T cd06658         101 LEGGALTDIVTH---TRMNEEQIATVCLSVLRALSYLHNQG--VIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKR  175 (292)
T ss_pred             CCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--EeecCCCHHHEEEcCCCCEEEccCcchhhcccccccC
Confidence            999999998752   35789999999999999999999998  9999999999999999999999999987543211   


Q ss_pred             ------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          460 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       460 ------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                            ..+.+++......++.++|||||||++||+++|+.||....  ..+........       ..+.... .....
T Consensus       176 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~--~~~~~~~~~~~-------~~~~~~~-~~~~~  245 (292)
T cd06658         176 KSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEP--PLQAMRRIRDN-------LPPRVKD-SHKVS  245 (292)
T ss_pred             ceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHhc-------CCCcccc-ccccC
Confidence                  11223333333346889999999999999999999995322  22211111111       1111110 11223


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+.+++.+||+.||.+|||++|+++
T Consensus       246 ~~~~~li~~~l~~~P~~Rpt~~~il~  271 (292)
T cd06658         246 SVLRGFLDLMLVREPSQRATAQELLQ  271 (292)
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhh
Confidence            46889999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=3.3e-32  Score=274.13  Aligned_cols=235  Identities=19%  Similarity=0.280  Sum_probs=182.2

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|++|.||++.. .++..+++|.+....     ....+.+.+|+.+++.++|+||+++++++...+  ..++++|
T Consensus        24 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~-----~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~--~~~~v~e   96 (285)
T cd06648          24 FVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRK-----QQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGD--ELWVVME   96 (285)
T ss_pred             ceEeccCCCeEEEEEEECCCCCEEEEEEEeccc-----hhHHHHHHHHHHHHHHcCCCChheEEEEEEcCC--eEEEEEe
Confidence            36899999999999985 467889999775322     123456889999999999999999999988766  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh--
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~--  459 (592)
                      |+++++|.+++..   ..+++..+..++.+++.|++|||+.+  ++||||+|+||++++++.+||+|||++.......  
T Consensus        97 ~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~  171 (285)
T cd06648          97 FLEGGALTDIVTH---TRMNEEQIATVCLAVLKALSFLHAQG--VIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPR  171 (285)
T ss_pred             ccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCChhhEEEcCCCcEEEcccccchhhccCCcc
Confidence            9999999998864   45889999999999999999999998  9999999999999999999999999876543211  


Q ss_pred             -------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          460 -------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       460 -------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                             ..+.+++......++.++|||||||++|||++|+.||...  .............  .     +... .....
T Consensus       172 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~--~~~~~~~~~~~~~--~-----~~~~-~~~~~  241 (285)
T cd06648         172 RKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNE--PPLQAMKRIRDNL--P-----PKLK-NLHKV  241 (285)
T ss_pred             cccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCC--CHHHHHHHHHhcC--C-----CCCc-ccccC
Confidence                   1123333333344788999999999999999999998532  2233333222221  0     1110 11123


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      +..+.+++.+||+.+|++||++.++++
T Consensus       242 ~~~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         242 SPRLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             CHHHHHHHHHHcccChhhCcCHHHHcc
Confidence            357999999999999999999999885

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=1.1e-32  Score=283.59  Aligned_cols=243  Identities=17%  Similarity=0.227  Sum_probs=179.1

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+++.. ++..+|+|.+.......  ......|.+|+.++..++|+||+++++++...+  ..++||
T Consensus         5 i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~--~~~lv~   80 (331)
T cd05624           5 IIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLK--RAETACFREERNVLVNGDCQWITTLHYAFQDEN--YLYLVM   80 (331)
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHh--hHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC--EEEEEE
Confidence            4578999999999999964 57889999876432111  223456888999999999999999999998777  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++... ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...... 
T Consensus        81 Ey~~gg~L~~~l~~~-~~~l~~~~~~~~~~qi~~~L~~lH~~~--iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  157 (331)
T cd05624          81 DYYVGGDLLTLLSKF-EDRLPEDMARFYIAEMVLAIHSIHQLH--YVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGT  157 (331)
T ss_pred             eCCCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCchHHEEEcCCCCEEEEeccceeeccCCCc
Confidence            999999999998642 346888899999999999999999998  9999999999999999999999999987653211 


Q ss_pred             ---------hhhcccccCCC-----CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          460 ---------MAATSKKLSSA-----PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       460 ---------~~~~~~~~~~~-----~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                               ..+.+++....     ..++.++|||||||++|||+||+.||..  .+..+.............  ++...
T Consensus       158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~--~~~~~~~~~i~~~~~~~~--~p~~~  233 (331)
T cd05624         158 VQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYA--ESLVETYGKIMNHEERFQ--FPSHI  233 (331)
T ss_pred             eeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccC--CCHHHHHHHHHcCCCccc--CCCcc
Confidence                     11222332211     2357789999999999999999999953  233333333332211110  11111


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCC--CCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEK--RPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~--RPs~~ev~~  559 (592)
                          ...++++.+++.+|+..++++  |++++++.+
T Consensus       234 ----~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~  265 (331)
T cd05624         234 ----TDVSEEAKDLIQRLICSRERRLGQNGIEDFKK  265 (331)
T ss_pred             ----ccCCHHHHHHHHHHccCchhhcCCCCHHHHhc
Confidence                123457889999998865544  467777764

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=2.3e-32  Score=276.34  Aligned_cols=249  Identities=18%  Similarity=0.198  Sum_probs=180.6

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|..+ ++..+++|.+......   ......+.+|++++.+++||||+++++++...+....++|+
T Consensus         9 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~   85 (293)
T cd07843           9 KLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEK---EGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVM   85 (293)
T ss_pred             hhhhhcCCCCeEEEEEEECCCCcEEEEEEEeecccc---ccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEe
Confidence            4578999999999999975 5788999988654332   12334677899999999999999999998876323689999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||++ ++|.+++... ...+++.....++.+++.||+|||+++  ++|+||||+||++++++.+||+|||+++.......
T Consensus        86 e~~~-~~L~~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~--i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  161 (293)
T cd07843          86 EYVE-HDLKSLMETM-KQPFLQSEVKCLMLQLLSGVAHLHDNW--ILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLK  161 (293)
T ss_pred             hhcC-cCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCCHHHEEECCCCcEEEeecCceeeccCCcc
Confidence            9997 5898887643 236899999999999999999999998  99999999999999999999999999886543211


Q ss_pred             h---hcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC---------------
Q 007711          461 A---ATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ---------------  515 (592)
Q Consensus       461 ~---~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~---------------  515 (592)
                      .   ......+++|+       .+.++||||||+++|||++|+.||....  ..+..........               
T Consensus       162 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (293)
T cd07843         162 PYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKS--EIDQLNKIFKLLGTPTEKIWPGFSELPG  239 (293)
T ss_pred             ccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCchHHHHHhhccch
Confidence            0   01112233343       4778999999999999999999995322  1111111110000               


Q ss_pred             ----CCccccCCCC-CCCCHH-HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          516 ----PLQQFVDPTL-SSFDEE-QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       516 ----~~~~~~~~~~-~~~~~~-~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          .........+ ..++.. ....+.+++.+||+.+|++|||+.|++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         240 AKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             hcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhc
Confidence                0000000000 011111 2456889999999999999999999875

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=9.4e-33  Score=285.98  Aligned_cols=188  Identities=20%  Similarity=0.262  Sum_probs=159.5

Q ss_pred             HhhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-C-----CceeeeeEEEecC
Q 007711          299 CEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-H-----KNFVNLIGFCEEE  371 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H-----~niv~l~g~~~~~  371 (592)
                      ++.+.+.||+|+||.|.||.. .+++.||||+++...      ....+-..|+.+|..++ |     -|+|++++++...
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k------~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr  260 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKK------RFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFR  260 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccCh------HHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccc
Confidence            445568999999999999984 569999999997543      23455667899998886 4     4899999999998


Q ss_pred             CCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC--CceEEecC
Q 007711          372 EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED--YAAKLSDL  449 (592)
Q Consensus       372 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~--~~~ki~Df  449 (592)
                      +  +.|||+|.+.. +|+++++.+....++......|+.||+.||.+||+.+  |||+||||+||||.+-  ..+||.||
T Consensus       261 ~--HlciVfELL~~-NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~--IIHcDLKPENILL~~~~r~~vKVIDF  335 (586)
T KOG0667|consen  261 N--HLCIVFELLST-NLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELG--IIHCDLKPENILLKDPKRSRIKVIDF  335 (586)
T ss_pred             c--ceeeeehhhhh-hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeccCChhheeeccCCcCceeEEec
Confidence            8  78999999955 9999999888888999999999999999999999999  9999999999999753  47999999


Q ss_pred             CcchhhhhhhhhhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCccc
Q 007711          450 SFWNEIAMAEMAATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYL  497 (592)
Q Consensus       450 Gla~~~~~~~~~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~  497 (592)
                      |.++........+....+|++||      |+++.||||||||+.||+||.+-|.
T Consensus       336 GSSc~~~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfp  389 (586)
T KOG0667|consen  336 GSSCFESQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFP  389 (586)
T ss_pred             ccccccCCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccC
Confidence            99998765554444455666666      7999999999999999999977774

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=2.9e-32  Score=273.99  Aligned_cols=239  Identities=17%  Similarity=0.260  Sum_probs=175.9

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHH-HhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDT-LSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~-l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.+.||+|+||.||++... +|..||+|.+......    ....++..|+.. ++..+|+||+++++++....  ..+++
T Consensus         5 ~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~--~~~lv   78 (283)
T cd06617           5 VIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNS----QEQKRLLMDLDISMRSVDCPYTVTFYGALFREG--DVWIC   78 (283)
T ss_pred             EEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCc----HHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCC--cEEEE
Confidence            4578999999999999964 6899999987643221    123456666665 56678999999999998776  67999


Q ss_pred             EeeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          380 FEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~-~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      +||++ |+|.+++...  ....+++.....++.|++.|++|||+. +  ++||||||+||+++.++.+||+|||+++...
T Consensus        79 ~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~--i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~  155 (283)
T cd06617          79 MEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLS--VIHRDVKPSNVLINRNGQVKLCDFGISGYLV  155 (283)
T ss_pred             hhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCC--eecCCCCHHHEEECCCCCEEEeecccccccc
Confidence            99996 6887777532  335689999999999999999999986 7  9999999999999999999999999987653


Q ss_pred             hhh--------hhhcccccCCC----CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          457 MAE--------MAATSKKLSSA----PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       457 ~~~--------~~~~~~~~~~~----~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ...        ..+.+++....    ..++.++|||||||++|||++|+.||........... ......  .     +.
T Consensus       156 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~-~~~~~~--~-----~~  227 (283)
T cd06617         156 DSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLK-QVVEEP--S-----PQ  227 (283)
T ss_pred             cccccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHH-HHHhcC--C-----CC
Confidence            211        11222332211    2247789999999999999999999953222222221 111110  0     11


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..  ....+..+.+++.+||+.+|++||++.++++
T Consensus       228 ~~--~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         228 LP--AEKFSPEFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             CC--ccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            10  1123456889999999999999999999976

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.1e-32  Score=290.11  Aligned_cols=243  Identities=20%  Similarity=0.257  Sum_probs=175.6

Q ss_pred             hhhhcccCcCCCeEEEEEEeC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.+.+.||+|+||.||++...   .+..|++|.+...          ..+.+|++++++++|+||+++++++....  ..
T Consensus        94 y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~----------~~~~~E~~il~~l~h~~iv~~~~~~~~~~--~~  161 (392)
T PHA03207         94 YNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG----------KTPGREIDILKTISHRAIINLIHAYRWKS--TV  161 (392)
T ss_pred             eEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc----------ccHHHHHHHHHhcCCCCccceeeeEeeCC--EE
Confidence            445678999999999999753   3467788766421          23567999999999999999999988766  67


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++||||+. ++|.+++.  ....+++..+..++.+++.||+|||+++  |+||||||+|||++.++.+||+|||+++...
T Consensus       162 ~lv~e~~~-~~l~~~l~--~~~~l~~~~~~~i~~ql~~aL~~LH~~g--ivHrDlkp~Nill~~~~~~~l~DfG~a~~~~  236 (392)
T PHA03207        162 CMVMPKYK-CDLFTYVD--RSGPLPLEQAITIQRRLLEALAYLHGRG--IIHRDVKTENIFLDEPENAVLGDFGAACKLD  236 (392)
T ss_pred             EEEehhcC-CCHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEEcCCCCEEEccCccccccC
Confidence            99999995 68888873  3457899999999999999999999998  9999999999999999999999999987653


Q ss_pred             hhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC-ChHHHHHHHhcCCC--CC-----
Q 007711          457 MAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQ--PL-----  517 (592)
Q Consensus       457 ~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~--~~-----  517 (592)
                      ...           ..+.+++......++.++|||||||++|||++|+.||..... ..............  ..     
T Consensus       237 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~  316 (392)
T PHA03207        237 AHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQN  316 (392)
T ss_pred             cccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCc
Confidence            221           112233333333468899999999999999999999954321 11111111111000  00     


Q ss_pred             ------------ccccCCCCC--CC--CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          518 ------------QQFVDPTLS--SF--DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       518 ------------~~~~~~~~~--~~--~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                  .....+...  ..  .......+.+++.+||+.||++||++.|++.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~  374 (392)
T PHA03207        317 GSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILS  374 (392)
T ss_pred             cchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhh
Confidence                        000000000  00  0112346788999999999999999999986

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.4e-32  Score=269.30  Aligned_cols=242  Identities=17%  Similarity=0.214  Sum_probs=181.4

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|.. .++..+++|.+...............|.+|++++++++|+||+++++++........++++
T Consensus         6 ~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~   85 (264)
T cd06653           6 LGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFV   85 (264)
T ss_pred             eeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEEE
Confidence            457899999999999985 4588999998754322222233456789999999999999999999998765433568999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++++|.+++...  ..+++....+++.+++.|+.|||+++  ++|+||||+||+++.++.++|+|||+++...... 
T Consensus        86 e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~al~~LH~~~--i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~  161 (264)
T cd06653          86 EYMPGGSIKDQLKAY--GALTENVTRRYTRQILQGVSYLHSNM--IVHRDIKGANILRDSAGNVKLGDFGASKRIQTICM  161 (264)
T ss_pred             EeCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEcCCCCEEECccccccccccccc
Confidence            999999999988632  35788899999999999999999998  9999999999999999999999999987653211 


Q ss_pred             -----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          460 -----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       460 -----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                                 ..+.+++.......+.++|||||||++||+++|+.||...  ...+.+......  ..       ....
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~--~~-------~~~~  230 (264)
T cd06653         162 SGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEY--EAMAAIFKIATQ--PT-------KPML  230 (264)
T ss_pred             cCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCcc--CHHHHHHHHHcC--CC-------CCCC
Confidence                       1122233333333578899999999999999999999432  112212222111  00       1112


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      +....+.+.+++.+||+ +|.+||+..+++.
T Consensus       231 p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         231 PDGVSDACRDFLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             CcccCHHHHHHHHHHhc-CcccCccHHHHhc
Confidence            33344678999999998 5799999997764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=7.8e-32  Score=271.46  Aligned_cols=237  Identities=20%  Similarity=0.291  Sum_probs=184.1

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... ++..+++|.+.....      ..+.+.+|++++++++|+|++++++++....  ..++|+
T Consensus        23 ~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~   94 (286)
T cd06614          23 NLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ------NKELIINEILIMKDCKHPNIVDYYDSYLVGD--ELWVVM   94 (286)
T ss_pred             HhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch------hHHHHHHHHHHHHHCCCCCeeEEEEEEEECC--EEEEEE
Confidence            3467999999999999976 688899998864332      3567889999999999999999999998876  689999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++++|.+++.... ..+++..+..++.+++.||+|||+.+  ++|+||+|+||+++.++.+||+|||++....... 
T Consensus        95 e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~g--i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~  171 (286)
T cd06614          95 EYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQN--VIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKS  171 (286)
T ss_pred             eccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCChhhEEEcCCCCEEECccchhhhhccchh
Confidence            9999999999997533 47899999999999999999999988  9999999999999999999999999876543221 


Q ss_pred             --------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 --------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 --------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                              ..+.+++......++.++|||||||++|||+||+.||...  ............  ......      ....
T Consensus       172 ~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~--~~~~~~~~~~~~--~~~~~~------~~~~  241 (286)
T cd06614         172 KRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLRE--PPLRALFLITTK--GIPPLK------NPEK  241 (286)
T ss_pred             hhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhc--CCCCCc------chhh
Confidence                    1122333333334688999999999999999999999432  222222221111  111100      1122


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+..+.+++.+||+.+|.+||++.+++.
T Consensus       242 ~~~~l~~li~~~l~~~p~~Rpt~~~il~  269 (286)
T cd06614         242 WSPEFKDFLNKCLVKDPEKRPSAEELLQ  269 (286)
T ss_pred             CCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence            3457899999999999999999999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=2e-32  Score=276.84  Aligned_cols=238  Identities=21%  Similarity=0.314  Sum_probs=182.0

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|.. .++..+++|.+.....     ...+.+.+|+.++++++||||+++++++...+  ..++|
T Consensus        22 ~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~-----~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~--~~~lv   94 (293)
T cd06647          22 TRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQ-----PKKELIINEILVMRENKHPNIVNYLDSYLVGD--ELWVV   94 (293)
T ss_pred             eeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccc-----hHHHHHHHHHHHHhhcCCCCeeehhheeeeCC--cEEEE
Confidence            3457899999999999985 4678899998753321     23467889999999999999999999998776  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||+++|+|.+++..   ..+++..+..++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||++.......
T Consensus        95 ~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH~~g--i~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~  169 (293)
T cd06647          95 MEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ  169 (293)
T ss_pred             EecCCCCcHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhCC--EeeccCCHHHEEEcCCCCEEEccCcceecccccc
Confidence            999999999998863   35789999999999999999999998  9999999999999999999999999876543221


Q ss_pred             h---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 M---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 ~---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                      .         .+.+++......++.++|||||||++||+++|+.||.....  .+.........       .+.. ..+.
T Consensus       170 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~--~~~~~~~~~~~-------~~~~-~~~~  239 (293)
T cd06647         170 SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP--LRALYLIATNG-------TPEL-QNPE  239 (293)
T ss_pred             cccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCh--hhheeehhcCC-------CCCC-CCcc
Confidence            1         12333333334467899999999999999999999953321  11111000000       0001 1122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      .....+.+++.+||+.+|++||++.+++..
T Consensus       240 ~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         240 KLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             ccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            234578899999999999999999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=1.5e-32  Score=272.84  Aligned_cols=238  Identities=21%  Similarity=0.245  Sum_probs=181.8

Q ss_pred             cCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeCC
Q 007711          306 IGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  384 (592)
Q Consensus       306 lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~~  384 (592)
                      ||+|+||.||+++..+ |..+++|.+.......  ....+.+.+|++++++++|+||+++++.+....  ..++++||++
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~lv~e~~~   76 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIR--KNQVDQVLTERDILSQAQSPYVVKLYYSFQGKK--NLYLVMEYLP   76 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhh--hhHHHHHHHHHHHHHhCCCcchhHHHHheecCc--EEEEEEecCC
Confidence            6899999999999764 8899999875433211  234567899999999999999999999887766  6799999999


Q ss_pred             CCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh----
Q 007711          385 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----  460 (592)
Q Consensus       385 ~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~----  460 (592)
                      +++|.++++..  ..+++..+..++.+++.||+|||+.+  ++||||+|+||++++++.+||+|||++........    
T Consensus        77 ~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~lH~~~--i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  152 (265)
T cd05579          77 GGDLASLLENV--GSLDEDVARIYIAEIVLALEYLHSNG--IIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLN  152 (265)
T ss_pred             CCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHcC--eecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccc
Confidence            99999998642  36899999999999999999999998  99999999999999999999999999875432211    


Q ss_pred             -------------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          461 -------------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       461 -------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                                   .+.+++.......+.++||||||+++||++||+.||..  ....+.......+.....     ... 
T Consensus       153 ~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~-----~~~-  224 (265)
T cd05579         153 DDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHG--ETPEEIFQNILNGKIEWP-----EDV-  224 (265)
T ss_pred             cccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHhcCCcCCC-----ccc-
Confidence                         11122222222367789999999999999999999943  333444333332211110     000 


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                         ..+..+.+++.+||+.+|++||++.++.+.|+
T Consensus       225 ---~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~  256 (265)
T cd05579         225 ---EVSDEAIDLISKLLVPDPEKRLGAKSIEEIKN  256 (265)
T ss_pred             ---cCCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence               02457889999999999999999966665554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=5.3e-33  Score=279.54  Aligned_cols=248  Identities=16%  Similarity=0.212  Sum_probs=179.1

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. +|..+++|.+......   ......+.+|++++++++|+||+++++++....  ..++|+
T Consensus         4 ~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~---~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   78 (284)
T cd07839           4 KLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD---EGVPSSALREICLLKELKHKNIVRLYDVLHSDK--KLTLVF   78 (284)
T ss_pred             eEEEecccCCeEEEEEEECCCCcEEEEEEeeccccc---ccCccchhHHHHHHHhcCCCCeeeHHHHhccCC--ceEEEE
Confidence            4578999999999999964 6889999988653322   123356788999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||++ ++|.+++... ...+++.....++.++++||.|||+.+  ++||||||+||+++.++.+||+|||+++.......
T Consensus        79 e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~~~--i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~  154 (284)
T cd07839          79 EYCD-QDLKKYFDSC-NGDIDPEIVKSFMFQLLKGLAFCHSHN--VLHRDLKPQNLLINKNGELKLADFGLARAFGIPVR  154 (284)
T ss_pred             ecCC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHEEEcCCCcEEECccchhhccCCCCC
Confidence            9997 5787777532 346899999999999999999999998  99999999999999999999999999876532211


Q ss_pred             ---------hhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCC--------------CC
Q 007711          461 ---------AATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV--------------QP  516 (592)
Q Consensus       461 ---------~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~--------------~~  516 (592)
                               .+.+|+.... ..++.++|||||||++|||+||+.|+..... ..+.........              ..
T Consensus       155 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (284)
T cd07839         155 CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND-VDDQLKRIFRLLGTPTEESWPGVSKLPD  233 (284)
T ss_pred             CcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCC-HHHHHHHHHHHhCCCChHHhHHhhhccc
Confidence                     1222332211 2257889999999999999999998643222 222111111000              00


Q ss_pred             Cccc--cCCCC--CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          517 LQQF--VDPTL--SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       517 ~~~~--~~~~~--~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....  .....  .........++.+++.+||+.||.+|||+++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         234 YKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             ccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence            0000  00000  0011123467889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=1.3e-32  Score=296.22  Aligned_cols=247  Identities=17%  Similarity=0.255  Sum_probs=169.7

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCC------CceeeeeEEEecCCC
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH------KNFVNLIGFCEEEEP  373 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H------~niv~l~g~~~~~~~  373 (592)
                      .+.+.||+|+||.||+|.. ..+..||||++....      ...+++..|++++.+++|      .+++++++++.....
T Consensus       132 ~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~------~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~  205 (467)
T PTZ00284        132 KILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP------KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETG  205 (467)
T ss_pred             EEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch------hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCc
Confidence            3457899999999999986 457889999885322      123445566766666654      558899998876542


Q ss_pred             cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCC----------
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDY----------  442 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~----------  442 (592)
                       ..++|||++ +++|.+++..  ...+++.....|+.|++.||+|||+ ++  |+||||||+|||++.++          
T Consensus       206 -~~~iv~~~~-g~~l~~~l~~--~~~l~~~~~~~i~~qi~~aL~yLH~~~g--IiHrDlKP~NILl~~~~~~~~~~~~~~  279 (467)
T PTZ00284        206 -HMCIVMPKY-GPCLLDWIMK--HGPFSHRHLAQIIFQTGVALDYFHTELH--LMHTDLKPENILMETSDTVVDPVTNRA  279 (467)
T ss_pred             -eEEEEEecc-CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhcCC--eecCCCCHHHEEEecCCcccccccccc
Confidence             578999988 7788888753  3568999999999999999999997 57  99999999999998765          


Q ss_pred             ------ceEEecCCcchhhhhhhh------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCC-h------
Q 007711          443 ------AAKLSDLSFWNEIAMAEM------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-L------  503 (592)
Q Consensus       443 ------~~ki~DfGla~~~~~~~~------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~-~------  503 (592)
                            .+||+|||.+........      .+.++|......++.++|||||||++|||+||+.||...+.. .      
T Consensus       280 ~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~  359 (467)
T PTZ00284        280 LPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEK  359 (467)
T ss_pred             cCCCCceEEECCCCccccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Confidence                  499999998764332221      223333333334788999999999999999999999643311 0      


Q ss_pred             ------HHHHHH--------HhcCCCCCccccCCC-C------CCC-CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          504 ------EDWAAD--------YLSGVQPLQQFVDPT-L------SSF-DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       504 ------~~~~~~--------~~~~~~~~~~~~~~~-~------~~~-~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                            .+|...        +......+....++. +      ... .......+.+|+.+||+.||++|||++|+++
T Consensus       360 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~  437 (467)
T PTZ00284        360 TLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTT  437 (467)
T ss_pred             HcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhc
Confidence                  011100        000000000000000 0      000 0011245789999999999999999999986

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=1.3e-32  Score=272.63  Aligned_cols=239  Identities=18%  Similarity=0.210  Sum_probs=184.4

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||.|+||.||++... ++..+++|.+.......  ....+.+.+|++++++++||||+++++++....  ..++|+
T Consensus         4 ~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   79 (258)
T cd05578           4 LLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVE--KGSVRNVLNERRILQELNHPFLVNLWYSFQDEE--NMYLVV   79 (258)
T ss_pred             EEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcc--hhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCC--eEEEEE
Confidence            4578999999999999975 58899999886433211  234578999999999999999999999987766  689999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++++|.+++...  ..+++.....++.+++.|+.|||+.+  ++|+||+|+||++++++.++|+|||++....... 
T Consensus        80 e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lh~~~--i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~  155 (258)
T cd05578          80 DLLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLHSKG--IIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTL  155 (258)
T ss_pred             eCCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHeEEcCCCCEEEeecccccccCCCcc
Confidence            999999999998643  46889999999999999999999998  9999999999999999999999999987653321 


Q ss_pred             -------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          460 -------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       460 -------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                             ..+.+++.......+.++||||||+++|||++|+.||........++.......   ..       ...+...
T Consensus       156 ~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~  225 (258)
T cd05578         156 TTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQET---AD-------VLYPATW  225 (258)
T ss_pred             ccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhcc---cc-------ccCcccC
Confidence                   112223332333368899999999999999999999964443323332222211   00       1112233


Q ss_pred             HHHHHHHHHHhcccCCCCCCCH--HHHH
Q 007711          533 LETLGELIKSCVRADPEKRPTM--RDIA  558 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~--~ev~  558 (592)
                      +..+.+++.+||+.||.+||++  +|+.
T Consensus       226 ~~~~~~~i~~~l~~~p~~R~~~~~~~l~  253 (258)
T cd05578         226 STEAIDAINKLLERDPQKRLGDNLKDLK  253 (258)
T ss_pred             cHHHHHHHHHHccCChhHcCCccHHHHh
Confidence            4678899999999999999999  5543

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-32  Score=275.31  Aligned_cols=247  Identities=18%  Similarity=0.224  Sum_probs=177.6

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|..+ ++..|++|.+.......    ....+.+|++++++++|+||+++++++...+  ..++||
T Consensus         9 ~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   82 (291)
T cd07844           9 KLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEG----APFTAIREASLLKDLKHANIVTLHDIIHTKK--TLTLVF   82 (291)
T ss_pred             EEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccC----CchhHHHHHHHHhhCCCcceeeEEEEEecCC--eEEEEE
Confidence            4578999999999999965 67899999886543221    1234678999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||++ ++|.+++... ...+++.....++.+++.||.|||+.+  ++||||||+||++++++.+||+|||+++...... 
T Consensus        83 e~~~-~~L~~~~~~~-~~~~~~~~~~~~~~ql~~al~~lH~~~--i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~  158 (291)
T cd07844          83 EYLD-TDLKQYMDDC-GGGLSMHNVRLFLFQLLRGLAYCHQRR--VLHRDLKPQNLLISERGELKLADFGLARAKSVPSK  158 (291)
T ss_pred             ecCC-CCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCC--eecccCCHHHEEEcCCCCEEECccccccccCCCCc
Confidence            9997 5998887643 346889999999999999999999998  9999999999999999999999999987543211 


Q ss_pred             --------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC-cc----------
Q 007711          460 --------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL-QQ----------  519 (592)
Q Consensus       460 --------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~-~~----------  519 (592)
                              ..+.+++... ...++.++|||||||++|||++|+.||....... +............ ..          
T Consensus       159 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (291)
T cd07844         159 TYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVE-DQLHKIFRVLGTPTEETWPGVSSNPE  237 (291)
T ss_pred             cccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHH-HHHHHHHHhcCCCChhhhhhhhhccc
Confidence                    1122233222 2335778999999999999999999995433211 1111111000000 00          


Q ss_pred             ccC--------CCCCCCCHHH--HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          520 FVD--------PTLSSFDEEQ--LETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       520 ~~~--------~~~~~~~~~~--~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...        ..+.......  ...+.+++.+|++.+|++||++.|++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         238 FKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             cccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence            000        0000000001  146789999999999999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=2.9e-32  Score=274.76  Aligned_cols=241  Identities=20%  Similarity=0.263  Sum_probs=177.4

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEEEE
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.||+|+||.||++... ++..+|+|.+......    .....+.+|+.++.++. |+||++++|++....  ..++++
T Consensus         9 ~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~----~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~--~~~~~~   82 (288)
T cd06616           9 LGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE----KEQKRLLMDLDVVMRSSDCPYIVKFYGALFREG--DCWICM   82 (288)
T ss_pred             HHHhCCCCceEEEEEEECCCCCEEEEEEehhccCh----HHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCC--cEEEEE
Confidence            457999999999999964 5889999987643321    34567889999999996 999999999988766  678999


Q ss_pred             eeCCCCCchhh---ccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          381 EYAPNGTLFEH---IHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       381 Ey~~~gsL~~~---l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ||+.. ++.++   +.......+++....+++.++++|++|||+ .+  ++||||||+||+++.++.+||+|||+++...
T Consensus        83 e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~--i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  159 (288)
T cd06616          83 ELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELK--IIHRDVKPSNILLDRNGNIKLCDFGISGQLV  159 (288)
T ss_pred             ecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCC--eeccCCCHHHEEEccCCcEEEeecchhHHhc
Confidence            99864 55443   222334678999999999999999999996 47  9999999999999999999999999987653


Q ss_pred             hhh--------hhhcccccCCCC---CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          457 MAE--------MAATSKKLSSAP---SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       457 ~~~--------~~~~~~~~~~~~---~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ...        ..+.+++.....   .++.++|||||||++|||+||+.||.... ...+..........  .. ..   
T Consensus       160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-~~~~~~~~~~~~~~--~~-~~---  232 (288)
T cd06616         160 DSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN-SVFDQLTQVVKGDP--PI-LS---  232 (288)
T ss_pred             cCCccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc-hHHHHHhhhcCCCC--Cc-CC---
Confidence            221        112233332222   46789999999999999999999995332 12222222211110  00 01   


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .......+.++.+++.+||+.+|++||++++|+.
T Consensus       233 ~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~  266 (288)
T cd06616         233 NSEEREFSPSFVNFINLCLIKDESKRPKYKELLE  266 (288)
T ss_pred             CcCCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            1111234567899999999999999999999876

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=6.5e-32  Score=277.62  Aligned_cols=253  Identities=18%  Similarity=0.259  Sum_probs=181.4

Q ss_pred             ccCcC--CCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          305 VIGSS--PIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       305 ~lG~G--~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .||+|  +||+||++.. ..|+.||+|.+......   ....+.+.+|+.+++.++||||+++++++...+  ..++|+|
T Consensus         5 ~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~--~~~~v~e   79 (328)
T cd08226           5 EIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCT---EEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGS--WLWVISP   79 (328)
T ss_pred             HhCCcccCceeEEEEEEcCCCcEEEEEEeccccCC---HHHHHHHHHHHHHHHhCCCCCcceEeeeEecCC--ceEEEEe
Confidence            46666  9999999986 47899999987643322   234567899999999999999999999998876  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh-
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-  460 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~-  460 (592)
                      |+++|+|.+++.......+++.....++.|++.||+|||+++  ++||||||+||+++.++.+|++||+.+........ 
T Consensus        80 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~--ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~  157 (328)
T cd08226          80 FMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNG--YIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQK  157 (328)
T ss_pred             cccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEeCCCcEEEechHHHhhhhccCcc
Confidence            999999999887554456889999999999999999999998  99999999999999999999999976433211100 


Q ss_pred             ---------hhcccccCCCCC--------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC--C----
Q 007711          461 ---------AATSKKLSSAPS--------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP--L----  517 (592)
Q Consensus       461 ---------~~~~~~~~~~~~--------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~--~----  517 (592)
                               .......+++|+        ++.++|||||||++|||++|+.||......  ............  .    
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~  235 (328)
T cd08226         158 AKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRT--QMLLQKLKGPPYSPLDITT  235 (328)
T ss_pred             ccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChH--HHHHHHhcCCCCCCccccc
Confidence                     000011233343        567899999999999999999999532211  111111110000  0    


Q ss_pred             --------------------c---------cccCCCC-CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHhhh
Q 007711          518 --------------------Q---------QFVDPTL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREIT  565 (592)
Q Consensus       518 --------------------~---------~~~~~~~-~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~--~L~~i~  565 (592)
                                          .         ....... ......+...+.+++.+||+.||++|||+.|+++  .++.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~~~~~~  315 (328)
T cd08226         236 FPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQVK  315 (328)
T ss_pred             cchhhhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCHHHHHHH
Confidence                                0         0000000 0112345567899999999999999999999964  444444


Q ss_pred             C
Q 007711          566 G  566 (592)
Q Consensus       566 ~  566 (592)
                      .
T Consensus       316 ~  316 (328)
T cd08226         316 E  316 (328)
T ss_pred             H
Confidence            3

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.5e-32  Score=271.00  Aligned_cols=241  Identities=19%  Similarity=0.267  Sum_probs=181.7

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCC----Cc
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE----PF  374 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~----~~  374 (592)
                      .+.+.||+|+||.||+|... ++..+++|.+.....      ..++|.+|+++++++ +|+||+++++++....    ..
T Consensus         9 ~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~------~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (275)
T cd06608           9 ELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED------EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDD   82 (275)
T ss_pred             eheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch------hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcce
Confidence            34578999999999999974 577899988754321      246789999999999 6999999999997644    12


Q ss_pred             ceEEEEeeCCCCCchhhccccC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcc
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  452 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~--~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla  452 (592)
                      ..++||||+++++|.+++....  ...+++..+..++.|++.|+.|||+.+  ++|+||+|+||++++++.+||+|||++
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~--i~H~~l~p~ni~~~~~~~~~l~d~~~~  160 (275)
T cd06608          83 QLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENK--VIHRDIKGQNILLTKNAEVKLVDFGVS  160 (275)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCC--cccCCCCHHHEEEccCCeEEECCCccc
Confidence            4689999999999999886432  467899999999999999999999998  999999999999999999999999998


Q ss_pred             hhhhhhhh---------hhcccccCC-----CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCc
Q 007711          453 NEIAMAEM---------AATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ  518 (592)
Q Consensus       453 ~~~~~~~~---------~~~~~~~~~-----~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~  518 (592)
                      ........         .+.+++...     .+.++.++|||||||++||++||+.||....  ............  . 
T Consensus       161 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~--~-  235 (275)
T cd06608         161 AQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMH--PMRALFKIPRNP--P-  235 (275)
T ss_pred             eecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccc--hHHHHHHhhccC--C-
Confidence            65432111         122232211     2235778999999999999999999995321  111111211110  0 


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 ~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          +.. ..+......+.+++.+||..||++|||+.++++
T Consensus       236 ----~~~-~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         236 ----PTL-KSPENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             ----CCC-CchhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence                111 112234567899999999999999999999875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=3.6e-32  Score=273.63  Aligned_cols=248  Identities=18%  Similarity=0.210  Sum_probs=183.0

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|... +|..+++|.+......   ......+.+|+.++++++|+||+++++++....  ..++|
T Consensus         3 ~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~~v   77 (286)
T cd07832           3 KILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLE---GGIPNQALREIKALQACQHPYVVKLLDVFPHGS--GFVLV   77 (286)
T ss_pred             eEEeecccCCCcEEEEEEECCCCceEEEEEEEccccc---chhhHHHHHHHHHHHhCCCCCCcceeeEEecCC--eeEEE
Confidence            34578999999999999964 6889999988654322   234567999999999999999999999998766  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||+ +++|.+++... ...+++..+..++.++++||+|||+.+  ++|+||||+||++++++.++|+|||++.......
T Consensus        78 ~e~~-~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~  153 (286)
T cd07832          78 MEYM-PSDLSEVLRDE-ERPLPEAQVKSYMRMLLKGVAYMHANG--IMHRDLKPANLLISADGVLKIADFGLARLFSEEE  153 (286)
T ss_pred             eccc-CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCcCHHHEEEcCCCcEEEeeeeecccccCCC
Confidence            9999 99999988643 356899999999999999999999998  9999999999999999999999999988664322


Q ss_pred             h----------hhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-------------
Q 007711          460 M----------AATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-------------  515 (592)
Q Consensus       460 ~----------~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-------------  515 (592)
                      .          .+.+++... ...++.++||||||+++|||+||+.||.... ....+ ........             
T Consensus       154 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~  231 (286)
T cd07832         154 PRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGEN-DIEQL-AIVFRTLGTPNEETWPGLTSL  231 (286)
T ss_pred             CCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCC-HHHHH-HHHHHHcCCCChHHHhhccCc
Confidence            1          112222221 2224778999999999999999987774322 11111 11111000             


Q ss_pred             -CCccccCCCCC-----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          516 -PLQQFVDPTLS-----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       516 -~~~~~~~~~~~-----~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       ....+..+...     ....+....+.+++.+||+.+|++||++++++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~  281 (286)
T cd07832         232 PDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALR  281 (286)
T ss_pred             chhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhh
Confidence             00000000000     011123467899999999999999999999875

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=5e-32  Score=269.91  Aligned_cols=242  Identities=16%  Similarity=0.279  Sum_probs=184.3

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCC-CchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKD-WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~-~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.||+|+||.||+|.. .++..+++|.+....... ......+.+.+|++++++++|+||+++++++...+  ..++|+
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~~v~   82 (268)
T cd06630           5 GQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDS--HFNLFV   82 (268)
T ss_pred             cceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCC--eEEEEE
Confidence            46799999999999985 578899999876433221 11224578999999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC-ceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~-~~ki~DfGla~~~~~~~  459 (592)
                      ||+++++|.+++..  ...+++.....++.+++.|++|||+++  ++|+||||+||+++.++ .+||+|||++.......
T Consensus        83 e~~~~~~L~~~l~~--~~~~~~~~~~~~~~ql~~al~~LH~~~--i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~  158 (268)
T cd06630          83 EWMAGGSVSHLLSK--YGAFKEAVIINYTEQLLRGLSYLHENQ--IIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKG  158 (268)
T ss_pred             eccCCCcHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEEccccccccccccc
Confidence            99999999998863  346889999999999999999999998  99999999999998775 69999999987654221


Q ss_pred             -------------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC-ChHHHHHHHhcCCCCCccccCCCC
Q 007711          460 -------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       460 -------------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                                   ..+.+++......++.++||||+|+++|||++|+.||..... .............      .   .
T Consensus       159 ~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~------~---~  229 (268)
T cd06630         159 TGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASAT------T---A  229 (268)
T ss_pred             ccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccC------C---C
Confidence                         112233333334568899999999999999999999953322 1122111111110      0   1


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...++.....+.+++.+||+.+|++||++.++++
T Consensus       230 ~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         230 PSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             CCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence            1223344567889999999999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=5.8e-32  Score=276.21  Aligned_cols=246  Identities=17%  Similarity=0.213  Sum_probs=177.0

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeC
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYA  383 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~  383 (592)
                      +.+|.|+++.||++.. ++..+|+|.+.....   .....+.+.+|+++++.++|+||+++++++...+  ..+++|||+
T Consensus         8 ~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~---~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~--~~~~~~e~~   81 (314)
T cd08216           8 KCFEDLMIVHLAKHKP-TNTLVAVKKINLDSC---SKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDS--ELYVVSPLM   81 (314)
T ss_pred             HhhcCCceEEEEEecC-CCCEEEEEEEecccc---chhHHHHHHHHHHHHHhcCCcchhhhhheeecCC--eEEEEEecc
Confidence            4456666666666655 688999998865421   1234567999999999999999999999998776  679999999


Q ss_pred             CCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh---
Q 007711          384 PNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM---  460 (592)
Q Consensus       384 ~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~---  460 (592)
                      ++|+|.+++.......+++.....++.+++.||+|||+.+  |+||||||+||++++++.+||+|||.+........   
T Consensus        82 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~--ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~  159 (314)
T cd08216          82 AYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKG--FIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQR  159 (314)
T ss_pred             CCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCcceEEEecCCceEEecCccceeecccccccc
Confidence            9999999987554556888899999999999999999998  99999999999999999999999998765421111   


Q ss_pred             -------hhcccccCCCCC--------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC----------
Q 007711          461 -------AATSKKLSSAPS--------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ----------  515 (592)
Q Consensus       461 -------~~~~~~~~~~~~--------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~----------  515 (592)
                             .......+.+|+        ++.++|||||||++|||++|+.||..... ....... ..+..          
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~-~~~~~~~-~~~~~~~~~~~~~~~  237 (314)
T cd08216         160 VVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPA-TQMLLEK-VRGTVPCLLDKSTYP  237 (314)
T ss_pred             ccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHH-HhccCccccccCchh
Confidence                   000111223333        57789999999999999999999953221 1111111 11000          


Q ss_pred             ----CCcc----ccCCCC-----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          516 ----PLQQ----FVDPTL-----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       516 ----~~~~----~~~~~~-----~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          ....    ..++..     ..........+.+++.+||+.||++|||++++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~  294 (314)
T cd08216         238 LYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLN  294 (314)
T ss_pred             hhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhc
Confidence                0000    000000     0112223457889999999999999999999986

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=2e-32  Score=275.79  Aligned_cols=250  Identities=18%  Similarity=0.258  Sum_probs=182.0

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||+|+||.||+|..+ ++..|++|.+......   ......+.+|++++++++|+||+++++++...+  ..++|
T Consensus         4 ~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~iv   78 (288)
T cd07833           4 EVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDD---EDVKKTALREVKVLRQLRHENIVNLKEAFRRKG--RLYLV   78 (288)
T ss_pred             eEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhccc---ccchhHHHHHHHHHHhcCCCCeeehhheEEECC--EEEEE
Confidence            45678999999999999975 5788999987543321   223467899999999999999999999998866  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||++++.+..+..  ....+++.....++.+++.|++|||+.+  ++||||+|+||++++++.+||+|||++.......
T Consensus        79 ~e~~~~~~l~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~  154 (288)
T cd07833          79 FEYVERTLLELLEA--SPGGLPPDAVRSYIWQLLQAIAYCHSHN--IIHRDIKPENILVSESGVLKLCDFGFARALRARP  154 (288)
T ss_pred             EecCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEECCCCCEEEEeeecccccCCCc
Confidence            99999877766554  2345889999999999999999999998  9999999999999999999999999987654332


Q ss_pred             h----------hhcccccCCCC-CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHH-HHHhcC-----------CCC
Q 007711          460 M----------AATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA-ADYLSG-----------VQP  516 (592)
Q Consensus       460 ~----------~~~~~~~~~~~-~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~-~~~~~~-----------~~~  516 (592)
                      .          .+.+++..... .++.++||||||+++|||++|+.||.........+. ......           ...
T Consensus       155 ~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (288)
T cd07833         155 ASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPR  234 (288)
T ss_pred             cccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCcc
Confidence            1          12223332222 567899999999999999999999853321111110 000000           000


Q ss_pred             Cc--cccCCCC-----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          517 LQ--QFVDPTL-----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       517 ~~--~~~~~~~-----~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..  ...+...     ..++...+.++.+++.+||..+|++||+++++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         235 FAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             ccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence            00  0000000     0112223577999999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.6e-32  Score=273.50  Aligned_cols=236  Identities=16%  Similarity=0.279  Sum_probs=179.8

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC---CCceeeeeEEEecCCCcceE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN---HKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~---H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.||+|+||.||+|.. .++..+++|.+.....    .....++.+|++++++++   |+|++++++++....  ..+
T Consensus         5 ~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~----~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~--~~~   78 (277)
T cd06917           5 RLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTP----DDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGP--RLW   78 (277)
T ss_pred             hhhheeccCCceEEEEEEcCCCcEEEEEEecCCCC----chhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCC--EEE
Confidence            346799999999999996 5688999998754322    223457888999999986   999999999998766  679


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +||||+++++|.++++.   ..+++.....++.+++.|+.|||+.+  ++|+||+|+||++++++.++|+|||++.....
T Consensus        79 lv~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~i~~~l~~lh~~~--i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06917          79 IIMEYAEGGSVRTLMKA---GPIAEKYISVIIREVLVALKYIHKVG--VIHRDIKAANILVTNTGNVKLCDFGVAALLNQ  153 (277)
T ss_pred             EEEecCCCCcHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCcCHHHEEEcCCCCEEEccCCceeecCC
Confidence            99999999999998853   36889999999999999999999998  99999999999999999999999999876532


Q ss_pred             hhh---------hhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          458 AEM---------AATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       458 ~~~---------~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      ...         .+.+++... ...++.++|||||||++|||++|+.||...  ......... ..      ...+.+..
T Consensus       154 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~--~~~~~~~~~-~~------~~~~~~~~  224 (277)
T cd06917         154 NSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDV--DAFRAMMLI-PK------SKPPRLED  224 (277)
T ss_pred             CccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCC--Chhhhhhcc-cc------CCCCCCCc
Confidence            211         112222221 122577899999999999999999999532  222211111 11      01111110


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        ...+..+.+++.+||+.||++||++.|++.
T Consensus       225 --~~~~~~~~~~i~~~l~~~p~~R~~~~~il~  254 (277)
T cd06917         225 --NGYSKLLREFVAACLDEEPKERLSAEELLK  254 (277)
T ss_pred             --ccCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence              113457889999999999999999999976

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=4.7e-32  Score=272.04  Aligned_cols=237  Identities=16%  Similarity=0.194  Sum_probs=173.5

Q ss_pred             ccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHH---hcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          305 VIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTL---SKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       305 ~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l---~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .||+|+||.||++.. .++..+|+|.+.......  ......+.+|..++   ...+|+||+.+++++...+  ..++||
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~lv~   76 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKM--KQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPD--KLCFIL   76 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEcccccc--chHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCC--eEEEEE
Confidence            489999999999996 458899999886543221  11223344454433   3447999999999988776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++..  ...+++.....++.|++.|++|||+.+  ++||||||+|||+++++.+||+|||++....... 
T Consensus        77 e~~~~~~L~~~i~~--~~~l~~~~~~~i~~qi~~al~~lH~~~--ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~  152 (279)
T cd05633          77 DLMNGGDLHYHLSQ--HGVFSEKEMRFYATEIILGLEHMHNRF--VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP  152 (279)
T ss_pred             ecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--cCCCCCCHHHEEECCCCCEEEccCCcceeccccCc
Confidence            99999999988863  346899999999999999999999998  9999999999999999999999999986543211 


Q ss_pred             ------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          460 ------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       460 ------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            ..+.+++... ...++.++|||||||++|||+||+.||.................       .+.   ..++..
T Consensus       153 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~-------~~~---~~~~~~  222 (279)
T cd05633         153 HASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT-------VNV---ELPDSF  222 (279)
T ss_pred             cCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHhhc-------CCc---CCcccc
Confidence                  1122233222 22357789999999999999999999964332222221111100       011   122334


Q ss_pred             HHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      +..+.+++.+||+.||++||     +++|+++
T Consensus       223 ~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~  254 (279)
T cd05633         223 SPELKSLLEGLLQRDVSKRLGCLGRGAQEVKE  254 (279)
T ss_pred             CHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHh
Confidence            46788999999999999999     5888876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=7e-32  Score=271.58  Aligned_cols=250  Identities=19%  Similarity=0.214  Sum_probs=180.0

Q ss_pred             hhcccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC---CCCceeeeeEEEecCCC---c
Q 007711          302 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV---NHKNFVNLIGFCEEEEP---F  374 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l---~H~niv~l~g~~~~~~~---~  374 (592)
                      +.+.||+|+||.||+|+.+. +..+|+|.+.......   .....+.+|++++.++   +|+|++++++++...+.   .
T Consensus         3 ~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~---~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~   79 (287)
T cd07838           3 ELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEE---GIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDREL   79 (287)
T ss_pred             EEEEecccCceEEEEEEECCCCCEEEEEEeccccccc---hhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCc
Confidence            45789999999999999864 8899999886543321   2234566777776655   69999999999987652   1


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..+++|||++ ++|.+++.......+++..+..++.+++.||+|||+.+  ++|+||+|+||++++++.+||+|||++..
T Consensus        80 ~~~l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~--i~h~~l~~~nili~~~~~~~l~dfg~~~~  156 (287)
T cd07838          80 KLTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHR--IVHRDLKPQNILVTSDGQVKIADFGLARI  156 (287)
T ss_pred             eeEEEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCChhhEEEccCCCEEEeccCccee
Confidence            2789999997 58988886544456899999999999999999999998  99999999999999999999999999876


Q ss_pred             hhhhhh--------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC-----c---
Q 007711          455 IAMAEM--------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL-----Q---  518 (592)
Q Consensus       455 ~~~~~~--------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~-----~---  518 (592)
                      ......        .+.+++......++.++|||||||++|||+||+.||...  ...+............     .   
T Consensus       157 ~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  234 (287)
T cd07838         157 YSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGT--SEADQLDKIFDVIGLPSEEEWPRNV  234 (287)
T ss_pred             ccCCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCC--ChHHHHHHHHHHcCCCChHhcCCCc
Confidence            532211        122233333334688999999999999999999998532  2222222222110000     0   


Q ss_pred             ----cccCCC----CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 ----QFVDPT----LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 ----~~~~~~----~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          ......    ...........+.+++.+||+.||++||++.|++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         235 SLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             ccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence                000000    00111223467789999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=5.5e-32  Score=279.26  Aligned_cols=250  Identities=20%  Similarity=0.247  Sum_probs=179.9

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.+.||+|+||.||+|... ++..+++|.+......   ......+.+|+.+++++ +|+||++++++|...+....+
T Consensus         9 y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~---~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   85 (337)
T cd07852           9 YEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRN---ATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIY   85 (337)
T ss_pred             HHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCc---chhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEE
Confidence            344578999999999999965 5788999987532211   12235677899999999 999999999998765433579


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +|+||++ ++|..++...   .++|..+..++.+++.||+|||+.+  |+||||||+||++++++.+||+|||+++....
T Consensus        86 lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~--i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~  159 (337)
T cd07852          86 LVFEYME-TDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHSGN--VIHRDLKPSNILLNSDCRVKLADFGLARSLSE  159 (337)
T ss_pred             EEecccc-cCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEcCCCcEEEeeccchhcccc
Confidence            9999997 5998887532   6789999999999999999999998  99999999999999999999999999886543


Q ss_pred             hhhh--------hcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC------
Q 007711          458 AEMA--------ATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP------  516 (592)
Q Consensus       458 ~~~~--------~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~------  516 (592)
                      ....        ......+++|+       .+.++||||||+++|||+||+.||.....  .+...........      
T Consensus       160 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~--~~~~~~~~~~~~~~~~~~~  237 (337)
T cd07852         160 LEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTST--LNQLEKIIEVIGPPSAEDI  237 (337)
T ss_pred             ccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHHHhCCCCHHHH
Confidence            2111        01111233343       56789999999999999999999953221  1111111100000      


Q ss_pred             -----------CccccCCC---CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          517 -----------LQQFVDPT---LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       517 -----------~~~~~~~~---~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                                 +..+....   ........+.++.+++.+||+.||++||++.++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         238 ESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             HHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence                       00000000   001111234678999999999999999999999974

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=3.5e-32  Score=270.17  Aligned_cols=238  Identities=21%  Similarity=0.316  Sum_probs=187.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|++|.||++... ++..+++|.+......    .....|.+|++.+.+++|+|++++++++....  ..++|+
T Consensus         5 ~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~   78 (264)
T cd06623           5 RVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDE----EFRKQLLRELKTLRSCESPYVVKCYGAFYKEG--EISIVL   78 (264)
T ss_pred             eeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcch----HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCC--eEEEEE
Confidence            4578999999999999976 4889999987654321    34578999999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      ||+++++|.+++...  ..+++..+..++.++++|++|||+ .+  ++||||+|+||+++.++.++|+|||++.......
T Consensus        79 e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lh~~~~--~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~  154 (264)
T cd06623          79 EYMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYLHTKRH--IIHRDIKPSNLLINSKGEVKIADFGISKVLENTL  154 (264)
T ss_pred             EecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhccCC--CccCCCCHHHEEECCCCCEEEccCccceecccCC
Confidence            999999999998643  568999999999999999999999 88  9999999999999999999999999987654222


Q ss_pred             h---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC-ChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          460 M---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       460 ~---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      .         .+.+++......++.++||||||+++|||+||+.||..... ...+.........  .        ...+
T Consensus       155 ~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~--~--------~~~~  224 (264)
T cd06623         155 DQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGP--P--------PSLP  224 (264)
T ss_pred             CcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcCC--C--------CCCC
Confidence            1         12233333333467899999999999999999999954431 2233232222111  0        1111


Q ss_pred             HH-HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EE-QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~-~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .. .+..+.+++.+||+.+|++||++.++++
T Consensus       225 ~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~  255 (264)
T cd06623         225 AEEFSPEFRDFISACLQKDPKKRPSAAELLQ  255 (264)
T ss_pred             cccCCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence            22 3457899999999999999999999986

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.2e-32  Score=267.24  Aligned_cols=242  Identities=17%  Similarity=0.169  Sum_probs=176.1

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHH-HhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDT-LSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~-l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||+|.. .++..+|+|.+.......  ......+..|..+ ....+|+|++++++++...+  ..++|+|
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--~~~lv~e   77 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIA--KNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKD--YLYLVME   77 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhH--HHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCC--eEEEEEe
Confidence            4589999999999986 458899999875432111  1122334455544 44558999999999998776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh--
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~--  459 (592)
                      |+++++|.+++...  ..+++.....++.|++.||.|||+.+  ++||||+|+||++++++.+||+|||+++......  
T Consensus        78 ~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  153 (260)
T cd05611          78 YLNGGDCASLIKTL--GGLPEDWAKQYIAEVVLGVEDLHQRG--IIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKF  153 (260)
T ss_pred             ccCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEECCCCcEEEeecccceeccccccC
Confidence            99999999998632  45788889999999999999999998  9999999999999999999999999987543211  


Q ss_pred             ---hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHH
Q 007711          460 ---MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETL  536 (592)
Q Consensus       460 ---~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  536 (592)
                         ..+.+++......++.++||||||+++|||+||+.||...  ...+.............    .   .....++..+
T Consensus       154 ~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~  224 (260)
T cd05611         154 VGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAE--TPDAVFDNILSRRINWP----E---EVKEFCSPEA  224 (260)
T ss_pred             CCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHhcccCCC----C---cccccCCHHH
Confidence               1122333333333688999999999999999999999532  23333333222211111    0   0111234578


Q ss_pred             HHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          537 GELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       537 ~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                      .+++.+||+.+|++||++.++.+.|.
T Consensus       225 ~~~i~~~l~~~p~~R~~~~~~~~~l~  250 (260)
T cd05611         225 VDLINRLLCMDPAKRLGANGYQEIKS  250 (260)
T ss_pred             HHHHHHHccCCHHHccCCCcHHHHHc
Confidence            99999999999999998766655443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=3.1e-33  Score=277.07  Aligned_cols=242  Identities=24%  Similarity=0.421  Sum_probs=182.6

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+++.. ++..+|+|.+.......   .......+|+.++++++|+||+++++++....  ..++||
T Consensus         3 ~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~---~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--~~~~v~   77 (260)
T PF00069_consen    3 LVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEE---EEREENIREIKILRRLRHPNIVQILDVFQDDN--YLYIVM   77 (260)
T ss_dssp             EEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHH---HHHHHHHHHHHHHHHHTBTTBCHEEEEEEESS--EEEEEE
T ss_pred             EeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccc---cccchhhhhhhccccccccccccccccccccc--cccccc
Confidence            4578999999999999975 45689999887554321   22234456999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh----
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA----  456 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~----  456 (592)
                      ||+++++|.+++.  ....+++..+..++.++++||+|||+.+  ++|+||||+||++++++.++|+|||.+....    
T Consensus        78 ~~~~~~~L~~~l~--~~~~~~~~~~~~~~~qi~~~L~~Lh~~~--i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~  153 (260)
T PF00069_consen   78 EYCPGGSLQDYLQ--KNKPLSEEEILKIAYQILEALAYLHSKG--IVHRDIKPENILLDENGEVKLIDFGSSVKLSENNE  153 (260)
T ss_dssp             EEETTEBHHHHHH--HHSSBBHHHHHHHHHHHHHHHHHHHHTT--EEESSBSGGGEEESTTSEEEESSGTTTEESTSTTS
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            9999999999987  3456799999999999999999999998  9999999999999999999999999986421    


Q ss_pred             -----hhhhhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCC-ChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          457 -----MAEMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       457 -----~~~~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                           .....+.+|+... ....+.++||||+|+++|||++|+.||..... +............  ..   ...  ...
T Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~--~~---~~~--~~~  226 (260)
T PF00069_consen  154 NFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRP--LP---SSS--QQS  226 (260)
T ss_dssp             EBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTH--HH---HHT--TSH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhccccc--cc---ccc--ccc
Confidence                 0112233444444 55678899999999999999999999954311 1111111111110  00   000  000


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ......+.+++.+||+.||++||++.++++
T Consensus       227 ~~~~~~l~~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  227 REKSEELRDLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             TTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred             chhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            011267999999999999999999999874

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=6e-32  Score=271.45  Aligned_cols=249  Identities=18%  Similarity=0.179  Sum_probs=176.8

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.+.||+|+||.||+|.. .++..+|+|.+......    .......+|+.++.++. |+|++++++++........++|
T Consensus         3 ~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~----~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv   78 (282)
T cd07831           3 ILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKS----LEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALV   78 (282)
T ss_pred             eEeeccccccceEEEEEEcCCCcEEEEEEehhccCC----chhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEE
Confidence            456799999999999995 46889999987543211    12234557888999885 9999999999987622267999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||++ |+|.+++... ...++|..+..++.+++.||+|||+.+  ++||||||+||+++. +.+||+|||+++......
T Consensus        79 ~e~~~-~~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~LH~~~--i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~  153 (282)
T cd07831          79 FELMD-MNLYELIKGR-KRPLPEKRVKSYMYQLLKSLDHMHRNG--IFHRDIKPENILIKD-DILKLADFGSCRGIYSKP  153 (282)
T ss_pred             EecCC-ccHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC--ceecccCHHHEEEcC-CCeEEEecccccccccCC
Confidence            99996 5888887643 346899999999999999999999998  999999999999999 999999999987653221


Q ss_pred             h--------hhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC-ChHHHHHHHhcCC----------CCCcc
Q 007711          460 M--------AATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGV----------QPLQQ  519 (592)
Q Consensus       460 ~--------~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~----------~~~~~  519 (592)
                      .        .+.+++.. .....+.++|||||||++|||++|+.||...+. +...+........          .....
T Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (282)
T cd07831         154 PYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMN  233 (282)
T ss_pred             CcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhccccccc
Confidence            1        12223321 222357789999999999999999999954321 1111111111000          00000


Q ss_pred             ccCCC-----CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          520 FVDPT-----LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       520 ~~~~~-----~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...+.     +.......+..+.+++.+||+.+|++||+++++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         234 YNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             ccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence            00000     00111234578999999999999999999999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=4.7e-32  Score=274.23  Aligned_cols=250  Identities=18%  Similarity=0.214  Sum_probs=178.2

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCC---cce
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEP---FTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~---~~~  376 (592)
                      ..+.||+|+||.||+|... ++..|++|.+......   ......+.+|++++++++ |+||+++++++...+.   ...
T Consensus         5 ~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~---~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~   81 (295)
T cd07837           5 KLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDE---EGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSL   81 (295)
T ss_pred             EeeEecccCCeEEEEEEECCCCcEEEEEeehhhccc---cCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceE
Confidence            4578999999999999964 6889999987554322   123456888999999995 6999999999876541   126


Q ss_pred             EEEEeeCCCCCchhhccccC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC-CCceEEecCCcc
Q 007711          377 MMVFEYAPNGTLFEHIHIKE---SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFW  452 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~---~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~-~~~~ki~DfGla  452 (592)
                      ++||||+++ +|.+++....   ...+++.....++.+|+.||+|||+.+  ++||||||+||+++. ++.+||+|||++
T Consensus        82 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~--i~H~dl~~~nil~~~~~~~~kl~dfg~~  158 (295)
T cd07837          82 YLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHG--VMHRDLKPQNLLVDKQKGLLKIADLGLG  158 (295)
T ss_pred             EEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCChHHEEEecCCCeEEEeecccc
Confidence            899999985 8888875432   346899999999999999999999998  999999999999998 899999999998


Q ss_pred             hhhhhhhh---------hhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-CCcccc
Q 007711          453 NEIAMAEM---------AATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-PLQQFV  521 (592)
Q Consensus       453 ~~~~~~~~---------~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~  521 (592)
                      +.......         .+.+++.. ....++.++|||||||++|||+||+.||.... .. +.......... ......
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~  236 (295)
T cd07837         159 RAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDS-EL-QQLLHIFKLLGTPTEQVW  236 (295)
T ss_pred             eecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCC-HH-HHHHHHHHHhCCCChhhC
Confidence            76532211         12223322 22335789999999999999999999995322 12 11111111100 000000


Q ss_pred             C-----------CC-----CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 D-----------PT-----LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ~-----------~~-----~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .           +.     .....+....++.+++.+||+.||++||++.|++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         237 PGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             cchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            0           00     00001123467889999999999999999999874

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=5.7e-32  Score=272.72  Aligned_cols=256  Identities=21%  Similarity=0.316  Sum_probs=190.5

Q ss_pred             hhcccCcCCCeEEEEEEe----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcce
Q 007711          302 FSNVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.+.||+|+||.||+++.    .++..++||.+....... .....+.+..|++++.++ +|+||+++++.+....  ..
T Consensus         4 ~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~-~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~--~~   80 (288)
T cd05583           4 LLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQ-KAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDT--KL   80 (288)
T ss_pred             EEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHh-hhhHHHHHHHHHHHHHhccCCcchhhhheeeecCC--EE
Confidence            457899999999999984    356789999876432111 122346788999999999 5999999999887766  67


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++||||+++|+|.+++..  ...+++.....++.++++||.|||+.+  ++||||||+||++++++.++|+|||+++...
T Consensus        81 ~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~ql~~~l~~lH~~~--~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  156 (288)
T cd05583          81 HLILDYVNGGELFTHLYQ--REHFTESEVRVYIAEIVLALDHLHQLG--IIYRDIKLENILLDSEGHVVLTDFGLSKEFL  156 (288)
T ss_pred             EEEEecCCCCcHHHHHhh--cCCcCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHeEECCCCCEEEEECccccccc
Confidence            899999999999998863  346888899999999999999999988  9999999999999999999999999987653


Q ss_pred             hhhhhh----cccccCCCCC--------CCCCCcchhhHHHHHHHHhCCCcccCCCC--ChHHHHHHHhcCCCCCccccC
Q 007711          457 MAEMAA----TSKKLSSAPS--------ASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQQFVD  522 (592)
Q Consensus       457 ~~~~~~----~~~~~~~~~~--------~s~ksDVwSfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~~~~~  522 (592)
                      ......    .....+.+|+        .+.++||||||+++|||+||+.||...+.  ...+...........      
T Consensus       157 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~------  230 (288)
T cd05583         157 AEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPP------  230 (288)
T ss_pred             cccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHccCCC------
Confidence            221110    1111222333        56789999999999999999999953221  122322222222111      


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCCCCccCcccHHHHH
Q 007711          523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIE  585 (592)
Q Consensus       523 ~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~~p~~~~~~~~~~~  585 (592)
                           .+......+.+++.+||+.||++|||+.++.+.|+.          |.+...+|++++
T Consensus       231 -----~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~----------~~~~~~~~~~~~  278 (288)
T cd05583         231 -----FPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNH----------PFFQGIDWDDLA  278 (288)
T ss_pred             -----CCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcC----------cccccCCHHHHh
Confidence                 112223468899999999999999999988877664          566666777664

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=7.6e-32  Score=271.23  Aligned_cols=249  Identities=18%  Similarity=0.225  Sum_probs=181.8

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. ++..+++|.+......   ......+.+|++++++++|+|++++++++........++|+
T Consensus         3 ~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   79 (287)
T cd07840           3 KIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEK---EGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVF   79 (287)
T ss_pred             eeEEeccCCCeEEEEEEECCCCeEEEEEEEeccccc---ccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEe
Confidence            3567999999999999975 4789999998755311   22346788999999999999999999999876212679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++ +|.+++... ...+++..+..++.++++|++|||+.+  ++|+||||+||++++++.+||+|||+++.......
T Consensus        80 e~~~~-~l~~~~~~~-~~~~~~~~~~~i~~~i~~al~~LH~~~--~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~  155 (287)
T cd07840          80 EYMDH-DLTGLLDSP-EVKFTESQIKCYMKQLLEGLQYLHSNG--ILHRDIKGSNILINNDGVLKLADFGLARPYTKRNS  155 (287)
T ss_pred             ccccc-cHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCcHHHeEEcCCCCEEEccccceeeccCCCc
Confidence            99974 888887533 246899999999999999999999998  99999999999999999999999999886643321


Q ss_pred             ----hhcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC-----Cccc----
Q 007711          461 ----AATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP-----LQQF----  520 (592)
Q Consensus       461 ----~~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~-----~~~~----  520 (592)
                          .......+.+|+       ++.++||||||+++|||+||+.||.....  .+...........     ....    
T Consensus       156 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (287)
T cd07840         156 ADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTE--LEQLEKIFELCGSPTDENWPGVSKLP  233 (287)
T ss_pred             ccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHHHhCCCchhhccccccch
Confidence                001112234444       47789999999999999999999954331  1211111110000     0000    


Q ss_pred             ----cCCC------CC-CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 ----VDPT------LS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ----~~~~------~~-~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          ..+.      +. .+...++..+.+++.+||+.+|++||+++++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         234 WFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             hhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence                0000      00 001112567889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.98  E-value=1.3e-31  Score=272.90  Aligned_cols=246  Identities=19%  Similarity=0.227  Sum_probs=182.0

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +..+.||+|+||.||+|+.. ++..+++|.+......  .....+++.+|+++++.++|+|++++++++....  ..++|
T Consensus        18 ~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   93 (308)
T cd06634          18 SDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQ--SNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH--TAWLV   93 (308)
T ss_pred             HHHHheeeCCCEEEEEEEEcCCCcEEEEEEEeccccc--ChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCC--eeEEE
Confidence            33467999999999999964 5778999887543221  1234467889999999999999999999998876  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||+. |++.+++... ...+++..+..++.+++.|+.|||+.+  ++||||||+||+++.++.+||+|||++.......
T Consensus        94 ~e~~~-~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~l~~LH~~~--i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~  169 (308)
T cd06634          94 MEYCL-GSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLHSHN--MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPAN  169 (308)
T ss_pred             EEccC-CCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHhEEECCCCcEEECCcccceeecCcc
Confidence            99996 6887776532 345889999999999999999999988  9999999999999999999999999987653221


Q ss_pred             h-----hhcccccC---CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 M-----AATSKKLS---SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 ~-----~~~~~~~~---~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                      .     .+.+++..   ....++.++|||||||++|||+||+.||....  ..+..........       +..  ....
T Consensus       170 ~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~--~~~~~~~~~~~~~-------~~~--~~~~  238 (308)
T cd06634         170 XFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN--AMSALYHIAQNES-------PAL--QSGH  238 (308)
T ss_pred             cccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCcccc--HHHHHHHHhhcCC-------CCc--Cccc
Confidence            1     12223221   11235778999999999999999999984322  1222222211110       000  0122


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      ....+.+++.+||+.+|++||++.+++..-....
T Consensus       239 ~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~  272 (308)
T cd06634         239 WSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR  272 (308)
T ss_pred             ccHHHHHHHHHHhhCCcccCCCHHHHhhCccccc
Confidence            3456889999999999999999999987644333

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=5.8e-33  Score=282.18  Aligned_cols=237  Identities=18%  Similarity=0.236  Sum_probs=184.1

Q ss_pred             hcccCcCCCeEEEEEEeCCCcEE-EEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLSNGVEI-AVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~~~~v-avk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      ...||.|+||.|||+..++...+ |.|++..+.     ....++|.-||++|..++||+||+|++.++..+  ..+++.|
T Consensus        37 iGELGDGAFGKVyKA~nket~~lAAaKvIetks-----eEELEDylVEIeILa~CdHP~ivkLl~ayy~en--kLwiliE  109 (1187)
T KOG0579|consen   37 IGELGDGAFGKVYKAVNKETKLLAAAKVIETKS-----EEELEDYLVEIEILAECDHPVIVKLLSAYYFEN--KLWILIE  109 (1187)
T ss_pred             HhhhcCccchhhhhhhcccchhhhhhhhhcccc-----hhHHhhhhhhhhhhhcCCChHHHHHHHHHhccC--ceEEEEe
Confidence            35699999999999997654433 445554333     234678999999999999999999999887776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh--
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~--  459 (592)
                      ||.||.....+-. -+..|...++.-++.+++.||.|||+.+  |+|||||+.|||+.-+|.++++|||.+.......  
T Consensus       110 FC~GGAVDaimlE-L~r~LtE~QIqvvc~q~ldALn~LHs~~--iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qk  186 (1187)
T KOG0579|consen  110 FCGGGAVDAIMLE-LGRVLTEDQIQVVCYQVLDALNWLHSQN--IIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQK  186 (1187)
T ss_pred             ecCCchHhHHHHH-hccccchHHHHHHHHHHHHHHHHHhhcc--hhhhhccccceEEEecCcEeeecccccccchhHHhh
Confidence            9999999877643 4567899999999999999999999999  9999999999999999999999999976543221  


Q ss_pred             -hhhcccccCCCCC-----------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          460 -MAATSKKLSSAPS-----------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       460 -~~~~~~~~~~~~~-----------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                       .....+.||++|+           |..++|||||||+|.||..+.+|..  +-++......+...       -+|.+ -
T Consensus       187 RDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHh--elnpMRVllKiaKS-------ePPTL-l  256 (1187)
T KOG0579|consen  187 RDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHH--ELNPMRVLLKIAKS-------EPPTL-L  256 (1187)
T ss_pred             hccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCcc--ccchHHHHHHHhhc-------CCCcc-c
Confidence             1222345676665           6889999999999999999999972  22233322222221       12222 2


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+..+...+.+++.+|+..+|..||++.++++
T Consensus       257 qPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~  288 (1187)
T KOG0579|consen  257 QPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLK  288 (1187)
T ss_pred             CcchhhhHHHHHHHHHHhcCCccCCCHHHHhh
Confidence            25566778999999999999999999998865

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.98  E-value=5.6e-32  Score=271.90  Aligned_cols=247  Identities=21%  Similarity=0.268  Sum_probs=179.6

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.+.||+|+||.||+|+.. ++..+++|.+......    .......+|+..+++++ |+|++++++++...+  ..++|
T Consensus         3 ~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~--~~~lv   76 (283)
T cd07830           3 VIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYS----WEECMNLREVKSLRKLNEHPNIVKLKEVFREND--ELYFV   76 (283)
T ss_pred             eheeeccCCceEEEEEEECCCCcEEEEEEehhhccc----hhHHHHHHHHHHHHhccCCCCchhHHHHhhcCC--cEEEE
Confidence            4578999999999999975 4778999987543221    12334567899999999 999999999998866  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+ +|+|.+++.......++|..+..++.+++.++.|||+++  ++|+||+|+||++++++.+||+|||+++......
T Consensus        77 ~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~--i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~  153 (283)
T cd07830          77 FEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHG--FFHRDLKPENLLVSGPEVVKIADFGLAREIRSRP  153 (283)
T ss_pred             EecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChhhEEEcCCCCEEEeecccceeccCCC
Confidence            9999 889999887555467899999999999999999999998  9999999999999999999999999987654321


Q ss_pred             hh--hcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhc---C------------CC
Q 007711          460 MA--ATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS---G------------VQ  515 (592)
Q Consensus       460 ~~--~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~---~------------~~  515 (592)
                      ..  ......+.+|+       ++.++||||||+++|||+||+.||.....  .+.......   .            ..
T Consensus       154 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (283)
T cd07830         154 PYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSE--IDQLYKICSVLGTPTKQDWPEGYKLAS  231 (283)
T ss_pred             CcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCCh--HHHHHHHHHhcCCCChhhhhhHhhhhc
Confidence            11  11112233333       57889999999999999999999843321  111111100   0            00


Q ss_pred             CCccccCCC----CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          516 PLQQFVDPT----LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       516 ~~~~~~~~~----~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .....+...    ...........+.+++.+||+.+|++||+++|++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         232 KLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             cccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence            000000000    00001111356889999999999999999999875

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=3.2e-32  Score=271.26  Aligned_cols=240  Identities=21%  Similarity=0.337  Sum_probs=191.0

Q ss_pred             HhhhhcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          299 CEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      .+++.+.||+|.|..|-.++ .-.|..||||++.+.....   .....+.+|+..|+-++|||||+|+.+.....  ..|
T Consensus        19 LYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~---~st~hlfqEVRCMKLVQHpNiVRLYEViDTQT--Kly   93 (864)
T KOG4717|consen   19 LYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDT---LSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQT--KLY   93 (864)
T ss_pred             eehhhhhhcCCceehhhhhhhhcccceeEEEEecccccch---hhhhHHHHHHHHHHHhcCcCeeeeeehhcccc--eEE
Confidence            34566789999999999888 3479999999998765543   33456889999999999999999999987766  789


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC-CCceEEecCCcchhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWNEIA  456 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~-~~~~ki~DfGla~~~~  456 (592)
                      ||+|.-.+|+|++|+- +....+......++..||..|+.|+|+..  +|||||||+|+.+-+ -|.+|+.|||++..+.
T Consensus        94 LiLELGD~GDl~DyIm-KHe~Gl~E~La~kYF~QI~~AI~YCHqLH--VVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~  170 (864)
T KOG4717|consen   94 LILELGDGGDLFDYIM-KHEEGLNEDLAKKYFAQIVHAISYCHQLH--VVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQ  170 (864)
T ss_pred             EEEEecCCchHHHHHH-hhhccccHHHHHHHHHHHHHHHHHHhhhh--hhcccCCcceeEEeeecCceEeeeccccccCC
Confidence            9999999999999985 34456888889999999999999999988  999999999998765 5789999999998875


Q ss_pred             hhhh--------hhcccccCCCCCC-CCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          457 MAEM--------AATSKKLSSAPSA-SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       457 ~~~~--------~~~~~~~~~~~~~-s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      .+..        ++.+|+...+-.| .+++||||+|||||-|++|+.||...+.+            +.+..+.|-.. .
T Consensus       171 PG~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDS------------ETLTmImDCKY-t  237 (864)
T KOG4717|consen  171 PGKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDS------------ETLTMIMDCKY-T  237 (864)
T ss_pred             CcchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccch------------hhhhhhhcccc-c
Confidence            4432        3333433322223 56799999999999999999999543321            12223333221 2


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .|.....+.++|+..|+..||++|.+.+||+.
T Consensus       238 vPshvS~eCrdLI~sMLvRdPkkRAslEeI~s  269 (864)
T KOG4717|consen  238 VPSHVSKECRDLIQSMLVRDPKKRASLEEIVS  269 (864)
T ss_pred             CchhhhHHHHHHHHHHHhcCchhhccHHHHhc
Confidence            46677788999999999999999999999985

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.98  E-value=8.5e-32  Score=271.86  Aligned_cols=247  Identities=18%  Similarity=0.202  Sum_probs=175.7

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|.. .++..+++|.+.......    ....+.+|++++++++|+||+++++++...+  ..++|+
T Consensus         9 ~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~----~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~--~~~lv~   82 (291)
T cd07870           9 NLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEG----VPFTAIREASLLKGLKHANIVLLHDIIHTKE--TLTFVF   82 (291)
T ss_pred             EEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCC----CcHHHHHHHHHHHhcCCCCEeEEEEEEecCC--eEEEEE
Confidence            347899999999999985 468899999886443221    2345778999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+. ++|.+++... ...+.+.....++.+++.||+|||+.+  ++|+||||+||+++.++++||+|||+++...... 
T Consensus        83 e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  158 (291)
T cd07870          83 EYMH-TDLAQYMIQH-PGGLHPYNVRLFMFQLLRGLAYIHGQH--ILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQ  158 (291)
T ss_pred             eccc-CCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCChHHEEEcCCCcEEEeccccccccCCCCC
Confidence            9996 6787766432 245788888899999999999999998  9999999999999999999999999987542211 


Q ss_pred             --------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhc--------------CCCC
Q 007711          460 --------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS--------------GVQP  516 (592)
Q Consensus       460 --------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~--------------~~~~  516 (592)
                              ..+.+++... ...++.++|||||||++|||+||+.||......... ......              ....
T Consensus       159 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  237 (291)
T cd07870         159 TYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQ-LEKIWTVLGVPTEDTWPGVSKLPN  237 (291)
T ss_pred             CCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHH-HHHHHHHcCCCChhhhhhhhhccc
Confidence                    1122233221 123567899999999999999999999543321111 111100              0000


Q ss_pred             Cc-cccCCC----CCCCC--HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          517 LQ-QFVDPT----LSSFD--EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       517 ~~-~~~~~~----~~~~~--~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .. ......    .....  ......+.+++.+|++.||.+|||+.|++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         238 YKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             ccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence            00 000000    00000  011356889999999999999999999864

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.98  E-value=9.2e-32  Score=272.37  Aligned_cols=241  Identities=18%  Similarity=0.285  Sum_probs=177.0

Q ss_pred             hhhcccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ++.+.||+|+||.||+|.+++ +..+|||.+......    ....++..|+.++.+.. |+||++++++|....  ..++
T Consensus        18 ~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~----~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--~~~~   91 (296)
T cd06618          18 ENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNK----EENKRILMDLDVVLKSHDCPYIVKCYGYFITDS--DVFI   91 (296)
T ss_pred             eeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCCh----HHHHHHHHHHHHHHhccCCCchHhhheeeecCC--eEEE
Confidence            346789999999999999864 889999988643221    23455677887777764 999999999998876  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +|||++ +++.++... ....+++..+.+++.+++.|++|||+ .+  |+||||+|+||++++++.+||+|||++.....
T Consensus        92 v~e~~~-~~l~~l~~~-~~~~l~~~~~~~i~~~i~~~l~~lH~~~~--i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~  167 (296)
T cd06618          92 CMELMS-TCLDKLLKR-IQGPIPEDILGKMTVAIVKALHYLKEKHG--VIHRDVKPSNILLDASGNVKLCDFGISGRLVD  167 (296)
T ss_pred             EeeccC-cCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhhCC--EecCCCcHHHEEEcCCCCEEECccccchhccC
Confidence            999985 467666543 23478999999999999999999997 46  99999999999999999999999999876532


Q ss_pred             hh--------hhhcccccCCC----CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          458 AE--------MAATSKKLSSA----PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       458 ~~--------~~~~~~~~~~~----~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ..        ..+.+++....    +.++.++||||||+++|||++|+.||...... .+...........       ..
T Consensus       168 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~~~~~~~~~~~-------~~  239 (296)
T cd06618         168 SKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTE-FEVLTKILQEEPP-------SL  239 (296)
T ss_pred             CCcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhH-HHHHHHHhcCCCC-------CC
Confidence            21        11223333222    22677899999999999999999999532221 2222222222110       00


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      . .......++.+++.+||+.||++||++.+++..
T Consensus       240 ~-~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  273 (296)
T cd06618         240 P-PNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQH  273 (296)
T ss_pred             C-CCCCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            0 011234578999999999999999999998753

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.98  E-value=8.1e-32  Score=274.53  Aligned_cols=249  Identities=17%  Similarity=0.175  Sum_probs=180.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... +|..||+|.+.......   .....+.+|++++++++|+||+++++++........++|+
T Consensus        11 ~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~   87 (309)
T cd07845          11 KLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERD---GIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFLVM   87 (309)
T ss_pred             EeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCC---CCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEEEE
Confidence            4578999999999999964 58899999886543222   1223467899999999999999999998765422578999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+. ++|.+++... ...+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++.......
T Consensus        88 e~~~-~~l~~~l~~~-~~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~  163 (309)
T cd07845          88 EYCE-QDLASLLDNM-PTPFSESQVKCLMLQLLRGLQYLHENF--IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAK  163 (309)
T ss_pred             ecCC-CCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEECCCCCEEECccceeeecCCccC
Confidence            9996 4788877532 356899999999999999999999999  99999999999999999999999999886643211


Q ss_pred             ---------hhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC-ccc---------
Q 007711          461 ---------AATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL-QQF---------  520 (592)
Q Consensus       461 ---------~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~-~~~---------  520 (592)
                               .+.+++.. ....++.++|||||||++|||++|+.||..  .+..+............ ...         
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
T cd07845         164 PMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPG--KSEIEQLDLIIQLLGTPNESIWPGFSDLPL  241 (309)
T ss_pred             CCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHHhcCCCChhhchhhhcccc
Confidence                     12223322 123357889999999999999999999953  22233322222110000 000         


Q ss_pred             -----cCCC-CCC---CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 -----VDPT-LSS---FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 -----~~~~-~~~---~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                           .... ...   ........+.+++.+|++.||++|||+.|++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~  289 (309)
T cd07845         242 VGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALE  289 (309)
T ss_pred             cccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                 0000 000   00112456789999999999999999999885

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.98  E-value=1.3e-31  Score=271.98  Aligned_cols=251  Identities=20%  Similarity=0.215  Sum_probs=180.0

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC------
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE------  372 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------  372 (592)
                      .++.+.||+|+||.||+|... +|..|++|.+.......   .....+.+|++++++++||||+++++++....      
T Consensus         9 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~---~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~   85 (302)
T cd07864           9 FDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKE---GFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFK   85 (302)
T ss_pred             hheeeeecccCCEEEEEEEECCCCcEEEEEEEeeccccc---CchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhcc
Confidence            345688999999999999975 58899999886543222   23456788999999999999999999987543      


Q ss_pred             --CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCC
Q 007711          373 --PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS  450 (592)
Q Consensus       373 --~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfG  450 (592)
                        ....++|+||+++ ++.+.+... ...+++.....++.+++.||+|||+.+  |+||||||+||++++++.+||+|||
T Consensus        86 ~~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~--i~H~dl~p~nili~~~~~~kl~dfg  161 (302)
T cd07864          86 KDKGAFYLVFEYMDH-DLMGLLESG-LVHFSEDHIKSFMKQLLEGLNYCHKKN--FLHRDIKCSNILLNNKGQIKLADFG  161 (302)
T ss_pred             ccCCcEEEEEcccCc-cHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEECCCCcEEeCccc
Confidence              1256899999976 676666532 446899999999999999999999998  9999999999999999999999999


Q ss_pred             cchhhhhhhh----------hhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHH---HHhcCCC-
Q 007711          451 FWNEIAMAEM----------AATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA---DYLSGVQ-  515 (592)
Q Consensus       451 la~~~~~~~~----------~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~---~~~~~~~-  515 (592)
                      ++........          .+.+++... ....+.++|||||||++|||++|+.||....  ..+...   ....... 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~--~~~~~~~~~~~~~~~~~  239 (302)
T cd07864         162 LARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQ--ELAQLELISRLCGSPCP  239 (302)
T ss_pred             ccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCCh
Confidence            9876532211          122233221 1235778999999999999999999995322  111111   1111100 


Q ss_pred             -CCcccc--------CC------CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          516 -PLQQFV--------DP------TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       516 -~~~~~~--------~~------~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       ....+.        ++      .........+..+.+++.+||+.||.+||++.+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         240 AVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             hhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence             000000        00      000001123467899999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.98  E-value=2e-31  Score=263.51  Aligned_cols=240  Identities=21%  Similarity=0.296  Sum_probs=186.1

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|++|.||+|... ++..+++|.+......   ....+.+.+|++.+++++|+||+++++++........++++|
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   81 (260)
T cd06606           5 GELLGRGSFGSVYLALDKDTGELMAVKSVELSGDS---EEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLE   81 (260)
T ss_pred             eeEeeecCceEEEEEEECCCCcEEEEEEeeccccc---hHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEE
Confidence            467999999999999976 6889999987654322   234678999999999999999999999998762126799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh-
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-  460 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~-  460 (592)
                      |+++++|.+++...  ..+++..+..++.++++|++|||+.+  ++|+||+|+||+++.++.+||+|||.+........ 
T Consensus        82 ~~~~~~L~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~~~--~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~  157 (260)
T cd06606          82 YVSGGSLSSLLKKF--GKLPEPVIRKYTRQILEGLAYLHSNG--IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETG  157 (260)
T ss_pred             ecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEEcCCCCEEEcccccEEeccccccc
Confidence            99999999998643  37899999999999999999999988  99999999999999999999999999876644321 


Q ss_pred             ----------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          461 ----------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       461 ----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                                .+.+++.......+.++||||||+++|||++|+.||.... ............         ......+.
T Consensus       158 ~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-~~~~~~~~~~~~---------~~~~~~~~  227 (260)
T cd06606         158 EGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELG-NPMAALYKIGSS---------GEPPEIPE  227 (260)
T ss_pred             ccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-chHHHHHhcccc---------CCCcCCCc
Confidence                      1122233333336889999999999999999999995433 111111111110         01112233


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+..+.+++.+||+.+|++||++.|++.
T Consensus       228 ~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         228 HLSEEAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             ccCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence            33567999999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.98  E-value=1.9e-31  Score=273.86  Aligned_cols=242  Identities=22%  Similarity=0.307  Sum_probs=191.5

Q ss_pred             hhhhcccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~  377 (592)
                      +++.+.||+|.||.||+++.+. |..+|+|.+.+.....  ......+.+|+.+|+++. |||||.+.+++....  ..+
T Consensus        37 Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~--~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~--~~~  112 (382)
T KOG0032|consen   37 YELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRG--KEDREDVRREVAILQQLSGHPNIVQLKDAFEDPD--SVY  112 (382)
T ss_pred             EEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccc--cccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCC--eEE
Confidence            4455789999999999999655 9999999997665443  223567899999999998 999999999999887  789


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC----CceEEecCCcch
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED----YAAKLSDLSFWN  453 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~----~~~ki~DfGla~  453 (592)
                      +|||++.+|.|++.+...   .++......++.+++.++.|||+.+  ++||||||+|+|+...    +.+|++|||++.
T Consensus       113 lvmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~~g--vvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~  187 (382)
T KOG0032|consen  113 LVMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHSLG--VVHRDLKPENLLLASKDEGSGRIKLIDFGLAK  187 (382)
T ss_pred             EEEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHhCC--ceeccCCHHHeeeccccCCCCcEEEeeCCCce
Confidence            999999999999998754   3899999999999999999999999  9999999999999744    479999999999


Q ss_pred             hhhhhhh--hhcccccCCCC------CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          454 EIAMAEM--AATSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       454 ~~~~~~~--~~~~~~~~~~~------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      .......  ......++.+|      .|+.++||||.||++|.|++|..||..+....  .......+..   .+.++  
T Consensus       188 ~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~--~~~~i~~~~~---~f~~~--  260 (382)
T KOG0032|consen  188 FIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFE--IFLAILRGDF---DFTSE--  260 (382)
T ss_pred             EccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhH--HHHHHHcCCC---CCCCC--
Confidence            8876221  11122334444      47889999999999999999999996544221  1223333321   11122  


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        ..+...+.+.+++..|+..||.+|+++.++++
T Consensus       261 --~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~  292 (382)
T KOG0032|consen  261 --PWDDISESAKDFIRKLLEFDPRKRLTAAQALQ  292 (382)
T ss_pred             --CccccCHHHHHHHHHhcccCcccCCCHHHHhc
Confidence              22334567899999999999999999999987

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.98  E-value=8.3e-32  Score=272.36  Aligned_cols=248  Identities=18%  Similarity=0.223  Sum_probs=178.0

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|++|.||+|... +++.+++|.+......   ......+.+|++++++++|+||+++++++....  ..++||
T Consensus         6 ~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   80 (294)
T PLN00009          6 KVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQED---EGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK--RLYLVF   80 (294)
T ss_pred             EEEEecCCCCEEEEEEEecCCCcEEEEEehhhcccc---ccchHHHHHHHHHHHhccCCCEeeEEEEEecCC--eEEEEE
Confidence            4578999999999999964 6889999987543221   123456889999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC-CCceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~-~~~~ki~DfGla~~~~~~~  459 (592)
                      ||++ ++|.+++.......+++.....++.+++.||+|||+.+  ++||||+|+||+++. ++.+||+|||+++......
T Consensus        81 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~--i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~  157 (294)
T PLN00009         81 EYLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHR--VLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPV  157 (294)
T ss_pred             eccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCCcceEEEECCCCEEEEcccccccccCCCc
Confidence            9996 58888775444445678888899999999999999998  999999999999985 5679999999987543221


Q ss_pred             ---------hhhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcC-CCCCcccc-------
Q 007711          460 ---------MAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG-VQPLQQFV-------  521 (592)
Q Consensus       460 ---------~~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~-------  521 (592)
                               ..+.+++.... ..++.++|||||||++|||+||+.||.... ...... ..... ........       
T Consensus       158 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~  235 (294)
T PLN00009        158 RTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDS-EIDELF-KIFRILGTPNEETWPGVTSLP  235 (294)
T ss_pred             cccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-HHHHHH-HHHHHhCCCChhhccccccch
Confidence                     11222332222 235778999999999999999999995322 111111 11100 00000000       


Q ss_pred             ----------CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 ----------DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ----------~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                .............++.+++.+|++.+|++||++.++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~  283 (294)
T PLN00009        236 DYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALE  283 (294)
T ss_pred             hhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence                      00000011123356889999999999999999999885

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.98  E-value=7.2e-32  Score=271.25  Aligned_cols=247  Identities=18%  Similarity=0.237  Sum_probs=180.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||.|++|.||+|+.. +|..+++|.+......    .....+.+|++++++++|+||+++++++...+  ..++||
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   77 (284)
T cd07836           4 QLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEE----GTPSTAIREISLMKELKHENIVRLHDVIHTEN--KLMLVF   77 (284)
T ss_pred             EeeeeccCCceEEEEEEECCCCeEEEEEEecccccc----cchHHHHHHHHHHHhhcCCCEeeeeeeEeeCC--cEEEEE
Confidence            4578999999999999974 5888999988654322    12346778999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      ||+++ +|.+++.... ...+++..+..++.+++.||+|||+.+  ++||||||+||++++++.+|++|||+++......
T Consensus        78 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~  154 (284)
T cd07836          78 EYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENR--VLHRDLKPQNLLINKRGELKLADFGLARAFGIPV  154 (284)
T ss_pred             ecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHHHEEECCCCcEEEeecchhhhhcCCc
Confidence            99984 8888875432 346899999999999999999999998  9999999999999999999999999987653221


Q ss_pred             h---------hhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhc--------------CCC
Q 007711          460 M---------AATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS--------------GVQ  515 (592)
Q Consensus       460 ~---------~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~--------------~~~  515 (592)
                      .         .+.+++.. ..+.++.++|||||||++|||+||+.||....  ..+.......              ...
T Consensus       155 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (284)
T cd07836         155 NTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTN--NEDQLLKIFRIMGTPTESTWPGISQLP  232 (284)
T ss_pred             cccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--cHHHHHHHHHHhCCCChhhHHHHhcCc
Confidence            1         12223322 12335778999999999999999999995332  1221111110              000


Q ss_pred             CCccccCC----CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          516 PLQQFVDP----TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       516 ~~~~~~~~----~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ........    ......+..+..+.+++.+||+.||.+||++.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         233 EYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             hhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            00000000    000011123456889999999999999999999874

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.98  E-value=3.4e-31  Score=260.69  Aligned_cols=237  Identities=20%  Similarity=0.330  Sum_probs=183.3

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|++|.||++... ++..+++|.+.....     .....+.+|++.+++++|+|++++++++....  ..++++|
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~l~~e   77 (253)
T cd05122           5 LEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK-----EKKEKIINEIQILKKCKHPNIVKYYGSYLKKD--ELWIVME   77 (253)
T ss_pred             eeeeccCCceEEEEEEECCCCcEEEEEEecccch-----hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC--eEEEEEe
Confidence            467999999999999975 688899998865432     23567999999999999999999999998776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh--
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~--  459 (592)
                      |+++++|.+++.... ..+++..+..++.+++.|++|||+.+  ++||||+|+||++++++.+||+|||.+.......  
T Consensus        78 ~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~--i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~  154 (253)
T cd05122          78 FCSGGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLHSNG--IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKAR  154 (253)
T ss_pred             cCCCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhcCC--EecCCCCHHHEEEccCCeEEEeeccccccccccccc
Confidence            999999999886432 57899999999999999999999988  9999999999999999999999999987765432  


Q ss_pred             h------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          460 M------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       460 ~------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                      .      .+.+++.......+.++||||||+++|||++|+.||....  ..........  ........      .....
T Consensus       155 ~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~--~~~~~~~~------~~~~~  224 (253)
T cd05122         155 NTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELP--PMKALFKIAT--NGPPGLRN------PEKWS  224 (253)
T ss_pred             cceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCc--hHHHHHHHHh--cCCCCcCc------ccccC
Confidence            1      1122232222336889999999999999999999995332  1221111111  11111111      11123


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+.+++.+||+.||++||++.|+++
T Consensus       225 ~~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         225 DEFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             HHHHHHHHHHccCChhhCCCHHHHhc
Confidence            56899999999999999999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.98  E-value=4.7e-32  Score=274.18  Aligned_cols=250  Identities=11%  Similarity=0.161  Sum_probs=165.5

Q ss_pred             hhhhcccCcCCCeEEEEEEeCCC----cEEEEEEeeecccCCCchh------HHHHHHHHHHHHhcCCCCceeeeeEEEe
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSNG----VEIAVASVSVASAKDWPKN------LEVQFRKKIDTLSKVNHKNFVNLIGFCE  369 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~~----~~vavk~~~~~~~~~~~~~------~~~~f~~e~~~l~~l~H~niv~l~g~~~  369 (592)
                      ..+.+.||+|+||.||+|.+.+.    ..+++|.............      .......+...+..++|+|++++++++.
T Consensus        14 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~   93 (294)
T PHA02882         14 WKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGCGS   93 (294)
T ss_pred             eEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEeee
Confidence            34567899999999999997543    3445554322211100000      0112233444566779999999999776


Q ss_pred             cCCC--cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEe
Q 007711          370 EEEP--FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS  447 (592)
Q Consensus       370 ~~~~--~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~  447 (592)
                      ....  ...++++|++.. ++.+.+..  ....++.....|+.+++.|++|||+.+  |+||||||+|||++.++.+||+
T Consensus        94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~--iiHrDiKp~Nill~~~~~~~l~  168 (294)
T PHA02882         94 FKRCRMYYRFILLEKLVE-NTKEIFKR--IKCKNKKLIKNIMKDMLTTLEYIHEHG--ISHGDIKPENIMVDGNNRGYII  168 (294)
T ss_pred             EecCCceEEEEEEehhcc-CHHHHHHh--hccCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCcEEEE
Confidence            5431  134677777643 55555432  223578888999999999999999998  9999999999999999999999


Q ss_pred             cCCcchhhhhhh----------------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChH--HHH-H
Q 007711          448 DLSFWNEIAMAE----------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE--DWA-A  508 (592)
Q Consensus       448 DfGla~~~~~~~----------------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~--~~~-~  508 (592)
                      |||+++.+....                ..+.+++......++.++|||||||++|||+||+.||........  ... .
T Consensus       169 DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~  248 (294)
T PHA02882        169 DYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKC  248 (294)
T ss_pred             EcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHH
Confidence            999987653111                112222333344478899999999999999999999964422111  000 0


Q ss_pred             HHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                      .....      +..+...  ...++..+.+++..||+.+|++||++.++.+.|+
T Consensus       249 ~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~~  294 (294)
T PHA02882        249 DFIKR------LHEGKIK--IKNANKFIYDFIECVTKLSYEEKPDYDALIKIFD  294 (294)
T ss_pred             HHHHH------hhhhhhc--cCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhhC
Confidence            11111      0001000  1123467899999999999999999999998763

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.98  E-value=1.1e-31  Score=269.52  Aligned_cols=246  Identities=17%  Similarity=0.237  Sum_probs=181.7

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|++|.||+|... ++..+++|.+......   ......+.+|++++++++|+||+++++++....  ..++|+|
T Consensus         4 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~e   78 (283)
T cd05118           4 LGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFES---EGIPKTALREIKLLKELNHPNIIKLLDVFRHKG--DLYLVFE   78 (283)
T ss_pred             ceeeecCCCceEEEEEcCCCCcEEEEEEecccccc---chhHHHHHHHHHHHHHhcCCCcchHHHhhccCC--CEEEEEe
Confidence            467999999999999864 6888999987644322   134567889999999999999999999998776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh--
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~--  459 (592)
                      |+++ +|.+++... ...+++..+..++.+++.|++|||+.+  ++|+||||+||++++++.+||+|||.+.......  
T Consensus        79 ~~~~-~l~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~  154 (283)
T cd05118          79 FMDT-DLYKLIKDR-QRGLPESLIKSYLYQLLQGLAFCHSHG--ILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRP  154 (283)
T ss_pred             ccCC-CHHHHHHhh-cccCCHHHHHHHHHHHHHHHHHHHHCC--eeecCcCHHHEEECCCCcEEEeeeeeeEecCCCccc
Confidence            9975 888877643 257899999999999999999999998  9999999999999999999999999987664322  


Q ss_pred             -------hhhcccccCCCC-CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC-----Ccccc-----
Q 007711          460 -------MAATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP-----LQQFV-----  521 (592)
Q Consensus       460 -------~~~~~~~~~~~~-~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----  521 (592)
                             ..+.+++..... ..+.++||||||+++|||+||+.||...+  ..+...........     .....     
T Consensus       155 ~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (283)
T cd05118         155 YTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKS--EIDQLFKIFRTLGTPDPEVWPKFTSLARN  232 (283)
T ss_pred             ccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHcCCCchHhcccchhhhhh
Confidence                   111222222222 46788999999999999999999994322  11111111110000     00000     


Q ss_pred             ---------CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 ---------DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ---------~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                               +.......+....++.+++.+||+.||.+||++++++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         233 YKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             hhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence                     00001112334578999999999999999999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.98  E-value=1.6e-31  Score=276.22  Aligned_cols=258  Identities=16%  Similarity=0.217  Sum_probs=182.6

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cceE
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTRM  377 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~~~  377 (592)
                      .+.||+|+||.||+|.. .+|..+|+|.+......   ......+.+|++++++++|+||+++++++.....    ...+
T Consensus        20 ~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~   96 (342)
T cd07879          20 LKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQS---EIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFY   96 (342)
T ss_pred             EEEeeecCCeEEEEEEeCCCCcEEEEEEecCcccc---ccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCceEE
Confidence            47899999999999995 46899999987643221   1234568899999999999999999999865431    1358


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +|+||+.. +|..+..    ..+++.....++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||+++....
T Consensus        97 lv~e~~~~-~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~--i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~  169 (342)
T cd07879          97 LVMPYMQT-DLQKIMG----HPLSEDKVQYLVYQMLCGLKYIHSAG--IIHRDLKPGNLAVNEDCELKILDFGLARHADA  169 (342)
T ss_pred             EEeccccc-CHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEEeeCCCCcCCCC
Confidence            99999964 6665542    35889999999999999999999998  99999999999999999999999999876532


Q ss_pred             hhh------hhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-C-------------
Q 007711          458 AEM------AATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-P-------------  516 (592)
Q Consensus       458 ~~~------~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-~-------------  516 (592)
                      ...      .+.+++.... ..++.++|||||||++|||++|+.||....  ............. .             
T Consensus       170 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (342)
T cd07879         170 EMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD--YLDQLTQILKVTGVPGPEFVQKLEDKAA  247 (342)
T ss_pred             CCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHhcCCCCHHHHHHhcccch
Confidence            221      1222332221 235778999999999999999999995322  1121111111000 0             


Q ss_pred             ------CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHhhhCCCCCCC
Q 007711          517 ------LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREITGITPDGA  572 (592)
Q Consensus       517 ------~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~--~L~~i~~~~~~~~  572 (592)
                            ...................+.+++.+||+.||++||++.+++.  .++.+....++..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~~~~~~~  311 (342)
T cd07879         248 KSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRDADEETE  311 (342)
T ss_pred             HHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhcccccccCC
Confidence                  0000000000000112346789999999999999999999995  4777766554443

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.98  E-value=2.9e-31  Score=266.26  Aligned_cols=237  Identities=15%  Similarity=0.188  Sum_probs=173.2

Q ss_pred             ccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHH---HHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          305 VIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKI---DTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       305 ~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~---~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .||+|+||.||++.. .+++.||+|.+.......  ......+..|.   ..++...|+||+++++++...+  ..++|+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~v~   76 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKM--KQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD--KLSFIL   76 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeecccccc--chhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCC--EEEEEE
Confidence            489999999999985 458899999886543221  11122334443   3445568999999999988776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++..  ...+++..+..++.++++|++|||+.+  ++||||||+||+++.++.+||+|||+++...... 
T Consensus        77 e~~~g~~L~~~l~~--~~~l~~~~~~~~~~ql~~~l~~lH~~~--i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~  152 (278)
T cd05606          77 DLMNGGDLHYHLSQ--HGVFSEAEMRFYAAEIILGLEHMHNRF--VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP  152 (278)
T ss_pred             ecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--EEcCCCCHHHEEECCCCCEEEccCcCccccCccCC
Confidence            99999999988753  356899999999999999999999988  9999999999999999999999999987543211 


Q ss_pred             ------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          460 ------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       460 ------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            ..+.+++... ...++.++|||||||++|||++|+.||.................       .++   ..+...
T Consensus       153 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~  222 (278)
T cd05606         153 HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT-------MAV---ELPDSF  222 (278)
T ss_pred             cCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhc-------cCC---CCCCcC
Confidence                  1122233222 22367889999999999999999999964322111111111110       011   112223


Q ss_pred             HHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      +..+.+++.+|+..+|.+||     ++.++++
T Consensus       223 s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~  254 (278)
T cd05606         223 SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  254 (278)
T ss_pred             CHHHHHHHHHHhhcCHHhccCCCCCCHHHHHh
Confidence            45789999999999999999     8888874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.98  E-value=6e-31  Score=268.58  Aligned_cols=237  Identities=19%  Similarity=0.248  Sum_probs=178.8

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      +.||+|+||.||+|+. .++..+++|.+.......  ....+.+.+|++++++++|+|++++++++....  ..++||||
T Consensus        27 ~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~  102 (313)
T cd06633          27 HEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQT--NEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEH--TAWLVMEY  102 (313)
T ss_pred             eeeccCCCeEEEEEEECCCCcEEEEEEEeccccCc--hHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCC--EEEEEEec
Confidence            5699999999999986 467889999876443221  234467889999999999999999999998876  67999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh---
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---  459 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~---  459 (592)
                      +. |++.+++.. ....+++..+..++.+++.|++|||+.+  ++|+||+|+||++++++.+||+|||++.......   
T Consensus       103 ~~-~~l~~~l~~-~~~~l~~~~~~~~~~qi~~al~~LH~~g--i~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~~~~~  178 (313)
T cd06633         103 CL-GSASDLLEV-HKKPLQEVEIAAITHGALQGLAYLHSHN--MIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSFV  178 (313)
T ss_pred             CC-CCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCChhhEEECCCCCEEEeecCCCcccCCCCCcc
Confidence            96 678777653 3356899999999999999999999998  9999999999999999999999999876532111   


Q ss_pred             --hhhcccccCC---CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 007711          460 --MAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  534 (592)
Q Consensus       460 --~~~~~~~~~~---~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (592)
                        ..+.+|+...   ...++.++|||||||++|||++|+.||...+  ............  .....       ......
T Consensus       179 ~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~--~~~~~~~~~~~~--~~~~~-------~~~~~~  247 (313)
T cd06633         179 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN--AMSALYHIAQND--SPTLQ-------SNEWTD  247 (313)
T ss_pred             ccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHhcC--CCCCC-------ccccCH
Confidence              1223333321   2336778999999999999999999985332  222222221111  11111       111234


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          535 TLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       535 ~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+.+++.+||+.+|.+||++.+++.
T Consensus       248 ~l~~li~~~l~~~P~~Rp~~~~~l~  272 (313)
T cd06633         248 SFRGFVDYCLQKIPQERPASAELLR  272 (313)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHhc
Confidence            6889999999999999999999885

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.97  E-value=3.2e-31  Score=267.81  Aligned_cols=234  Identities=19%  Similarity=0.291  Sum_probs=179.0

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      ..||+|+||.||++.. .++..+++|.+....     ......+.+|+.+++.++|+|++++++++...+  ..++||||
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~   98 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRK-----QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGD--ELWVVMEF   98 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccc-----hhHHHHHHHHHHHHHhcCCcchhheeeEEEeCC--EEEEEEec
Confidence            4699999999999986 468899999764322     123567899999999999999999999998877  67999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh---
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---  459 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~---  459 (592)
                      +++++|.+++..   ..+++.....++.+++.|++|||+.+  ++||||+|+||++++++.++|+|||++.......   
T Consensus        99 ~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~g--ivH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~  173 (292)
T cd06657          99 LEGGALTDIVTH---TRMNEEQIAAVCLAVLKALSVLHAQG--VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRR  173 (292)
T ss_pred             CCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEECCCCCEEEcccccceecccccccc
Confidence            999999988742   35789999999999999999999998  9999999999999999999999999876543211   


Q ss_pred             ------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          460 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       460 ------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                            ..+.+++......++.++|||||||++|||++|+.||...  ...+.........       ++.... ....+
T Consensus       174 ~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~--~~~~~~~~~~~~~-------~~~~~~-~~~~~  243 (292)
T cd06657         174 KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE--PPLKAMKMIRDNL-------PPKLKN-LHKVS  243 (292)
T ss_pred             cccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhhC-------CcccCC-cccCC
Confidence                  1122333333334578999999999999999999999532  2222222111110       011100 11223


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+.+++.+||+.+|.+||++.+++.
T Consensus       244 ~~l~~li~~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         244 PSLKGFLDRLLVRDPAQRATAAELLK  269 (292)
T ss_pred             HHHHHHHHHHHhCCcccCcCHHHHhc
Confidence            46889999999999999999999886

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.97  E-value=4.6e-31  Score=260.85  Aligned_cols=239  Identities=21%  Similarity=0.338  Sum_probs=186.9

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... ++..+++|.+......   ....+++.+|++++++++|+|++++++.+....  ..++|+
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~--~~~lv~   78 (258)
T cd08215           4 IIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMS---EKEREDALNEVKILKKLNHPNIIKYYESFEEKG--KLCIVM   78 (258)
T ss_pred             EEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCC---hHHHHHHHHHHHHHHhcCCCChhheEEEEecCC--EEEEEE
Confidence            3467999999999999964 5889999988654322   234567889999999999999999999988776  679999


Q ss_pred             eeCCCCCchhhccccC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          381 EYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~--~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||+++++|.+++....  ...+++.....++.+++.|++|||+.+  ++|+||+|+||++++++.+||+|||++......
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~--~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~  156 (258)
T cd08215          79 EYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRK--ILHRDIKPQNIFLTSNGLVKLGDFGISKVLSST  156 (258)
T ss_pred             EecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCC--EecccCChHHeEEcCCCcEEECCccceeecccC
Confidence            9999999999887542  467899999999999999999999998  999999999999999999999999998765432


Q ss_pred             hh---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          459 EM---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       459 ~~---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      ..         .+.+++......++.++||||||+++|||++|+.||...  +..+.........  .        ...+
T Consensus       157 ~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~--~~~~~~~~~~~~~--~--------~~~~  224 (258)
T cd08215         157 VDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGE--NLLELALKILKGQ--Y--------PPIP  224 (258)
T ss_pred             cceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCC--cHHHHHHHHhcCC--C--------CCCC
Confidence            20         112223222333678999999999999999999999433  2333333332221  1        1112


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ......+.+++.+||..+|++||++.++++
T Consensus       225 ~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         225 SQYSSELRNLVSSLLQKDPEERPSIAQILQ  254 (258)
T ss_pred             CCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            233457899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.97  E-value=2.6e-31  Score=262.67  Aligned_cols=239  Identities=23%  Similarity=0.305  Sum_probs=186.0

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... ++..+++|.+......   .....++.+|++++++++|+||+++++++....  ..++|+
T Consensus         4 ~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~   78 (256)
T cd08530           4 VLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMS---QKEREDAVNEIRILASVNHPNIISYKEAFLDGN--KLCIVM   78 (256)
T ss_pred             EeeeecCCCceeEEEEEECCCCCEEEEEEEehhhcc---HHHHHHHHHHHHHHHhCCCCCchhhhhhhccCC--EEEEEe
Confidence            4578999999999999854 6788999987643322   233567889999999999999999999988776  679999


Q ss_pred             eeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          381 EYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||+++++|.+++...  ....+++.....++.+++.|++|||+.+  ++|+||+|.||++++++.+|++|||+++.....
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~--i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~  156 (256)
T cd08530          79 EYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQK--ILHRDLKSANILLVANDLVKIGDLGISKVLKKN  156 (256)
T ss_pred             hhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCC--cccCCCCcceEEEecCCcEEEeeccchhhhccC
Confidence            999999999988642  2356899999999999999999999998  999999999999999999999999998766432


Q ss_pred             h-------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          459 E-------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       459 ~-------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                      .       ..+.+++......++.++||||||+++|||++|+.||...  +..+........  .        ....+..
T Consensus       157 ~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~--~~~~~~~~~~~~--~--------~~~~~~~  224 (256)
T cd08530         157 MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEAR--SMQDLRYKVQRG--K--------YPPIPPI  224 (256)
T ss_pred             CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHhcC--C--------CCCCchh
Confidence            1       1122333334445678999999999999999999999533  222222222211  1        1112234


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+.+++.+||+.+|++||++.|+++
T Consensus       225 ~~~~~~~li~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         225 YSQDLQNFIRSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             hCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            4567999999999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.97  E-value=1.4e-31  Score=273.51  Aligned_cols=252  Identities=16%  Similarity=0.225  Sum_probs=178.1

Q ss_pred             hhcccCcCCCeEEEEEEeC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.||+|+||.||+|...   ++..+|+|.+.......  ....+.+.+|++++.+++||||+++++++........++
T Consensus         4 ~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   81 (316)
T cd07842           4 IEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQY--TGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYL   81 (316)
T ss_pred             EEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccc--cCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEE
Confidence            4577999999999999964   47899999887533111  123456788999999999999999999998873336899


Q ss_pred             EEeeCCCCCchhhcccc---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC----CCceEEecCCc
Q 007711          379 VFEYAPNGTLFEHIHIK---ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE----DYAAKLSDLSF  451 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~---~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~----~~~~ki~DfGl  451 (592)
                      ||||+++ +|.+++...   ....++......++.|++.|++|||+.+  ++||||||+||+++.    ++.+||+|||+
T Consensus        82 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~  158 (316)
T cd07842          82 LFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNW--VLHRDLKPANILVMGEGPERGVVKIGDLGL  158 (316)
T ss_pred             EEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCC--EeeCCCCHHHEEEcCCCCccceEEECCCcc
Confidence            9999975 676665422   2236788899999999999999999998  999999999999999    99999999999


Q ss_pred             chhhhhhhh------------hhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCCh-----------HHHH
Q 007711          452 WNEIAMAEM------------AATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-----------EDWA  507 (592)
Q Consensus       452 a~~~~~~~~------------~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~-----------~~~~  507 (592)
                      ++.......            .+.+++.... ..++.++|||||||++|||++|+.||.......           .+++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (316)
T cd07842         159 ARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIF  238 (316)
T ss_pred             ccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHH
Confidence            886532211            1122222211 235778999999999999999999996433221           0000


Q ss_pred             HHHhc-----------CCCCCccccCC-CCCCCC---------H--HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          508 ADYLS-----------GVQPLQQFVDP-TLSSFD---------E--EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       508 ~~~~~-----------~~~~~~~~~~~-~~~~~~---------~--~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      . .+.           .........+. ....++         .  .....+.+++.+||+.||++|||+.|++.
T Consensus       239 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~  312 (316)
T cd07842         239 E-VLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALE  312 (316)
T ss_pred             H-HhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            0 000           00000000000 000001         0  22346889999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.2e-31  Score=270.31  Aligned_cols=237  Identities=24%  Similarity=0.338  Sum_probs=180.4

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+||.+.||++...+...+|+|++......   ......|..|++.|.++ .|.+||+|++|-..++  ..|+||
T Consensus       365 ilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D---~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~--~lYmvm  439 (677)
T KOG0596|consen  365 ILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEAD---NQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDG--YLYMVM  439 (677)
T ss_pred             HHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcC---HHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCc--eEEEEe
Confidence            34679999999999999887788888776543322   45677899999999999 5999999999988776  789999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||-+ -+|..+|+.+.....+| .+..+..+|..|+.+.|+.+  |||.||||.|+|+- +|.+||.|||+|..+.....
T Consensus       440 E~Gd-~DL~kiL~k~~~~~~~~-~lk~ywkqML~aV~~IH~~g--IVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTT  514 (677)
T KOG0596|consen  440 ECGD-IDLNKILKKKKSIDPDW-FLKFYWKQMLLAVKTIHQHG--IVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTT  514 (677)
T ss_pred             eccc-ccHHHHHHhccCCCchH-HHHHHHHHHHHHHHHHHHhc--eeecCCCcccEEEE-eeeEEeeeechhcccCcccc
Confidence            9874 49999998776666667 66678999999999999999  99999999999986 57899999999987643221


Q ss_pred             -----hhcccccCCCCC-----------------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCc
Q 007711          461 -----AATSKKLSSAPS-----------------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ  518 (592)
Q Consensus       461 -----~~~~~~~~~~~~-----------------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~  518 (592)
                           ....+.-|+.||                 ++.+|||||+|||||+|+.|+.||.    +.....       .++.
T Consensus       515 sI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~----~~~n~~-------aKl~  583 (677)
T KOG0596|consen  515 SIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFG----QIINQI-------AKLH  583 (677)
T ss_pred             ceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchH----HHHHHH-------HHHH
Confidence                 111112223332                 5788999999999999999999992    222111       1234


Q ss_pred             cccCCCCC-CCCHH-HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 QFVDPTLS-SFDEE-QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 ~~~~~~~~-~~~~~-~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+.+|... .|+.. ...++.++|+.|+++||++||+..++++
T Consensus       584 aI~~P~~~Iefp~~~~~~~li~~mK~CL~rdPkkR~si~eLLq  626 (677)
T KOG0596|consen  584 AITDPNHEIEFPDIPENDELIDVMKCCLARDPKKRWSIPELLQ  626 (677)
T ss_pred             hhcCCCccccccCCCCchHHHHHHHHHHhcCcccCCCcHHHhc
Confidence            44555321 22211 1123889999999999999999998875

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.97  E-value=1.5e-31  Score=265.36  Aligned_cols=242  Identities=18%  Similarity=0.210  Sum_probs=179.5

Q ss_pred             hhhcccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||++.... +..+++|.++.....+.......++..|+.++++++||||+++++++.+..  ..++|
T Consensus         3 ~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   80 (260)
T cd08222           3 ILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERD--AFCII   80 (260)
T ss_pred             eeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC--ceEEE
Confidence            345789999999999998643 344555555433322222233456778999999999999999999988766  57999


Q ss_pred             EeeCCCCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          380 FEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +||+++++|.++++.  .....+++..+..++.+++.|+.|||+.+  ++|+||||+||++++ ..+||+|||+++....
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~  157 (260)
T cd08222          81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRR--ILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMG  157 (260)
T ss_pred             EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcC--ccccCCChhheEeec-CCEeecccCceeecCC
Confidence            999999999988864  23457899999999999999999999988  999999999999986 5699999999876532


Q ss_pred             hhh---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          458 AEM---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       458 ~~~---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      ...         .+.+++......++.++||||||+++|||++|..||..  ....+.......+.          ....
T Consensus       158 ~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~----------~~~~  225 (260)
T cd08222         158 SCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEG--QNFLSVVLRIVEGP----------TPSL  225 (260)
T ss_pred             CcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHcCC----------CCCC
Confidence            211         11222322233357789999999999999999999942  23333333322211          1112


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      +...+.++.+++.+||+.+|++||++.|+++
T Consensus       226 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         226 PETYSRQLNSIMQSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             cchhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence            3344567899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=7.6e-31  Score=258.90  Aligned_cols=237  Identities=22%  Similarity=0.360  Sum_probs=184.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|++|.||++... ++..+++|.+......   ......+.+|++++++++|+|++++++++...+  ..++++
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~   78 (254)
T cd06627           4 LGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIK---EEALKSIMQEIDLLKNLKHPNIVKYIGSIETSD--SLYIIL   78 (254)
T ss_pred             eeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccC---HHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCC--EEEEEE
Confidence            4578999999999999864 5788999988654322   234568999999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++++|.+++...  ..+++..+..++.+++.|+.|||+.+  ++||||||+||+++.++.+||+|||++........
T Consensus        79 e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~  154 (254)
T cd06627          79 EYAENGSLRQIIKKF--GPFPESLVAVYVYQVLQGLAYLHEQG--VIHRDIKAANILTTKDGVVKLADFGVATKLNDVSK  154 (254)
T ss_pred             ecCCCCcHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhCC--cccCCCCHHHEEECCCCCEEEeccccceecCCCcc
Confidence            999999999988633  56899999999999999999999998  99999999999999999999999999886643221


Q ss_pred             ---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          461 ---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       461 ---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                               .+.+++.......+.++||||||+++|||++|+.||..... .... ......  ..        ...+..
T Consensus       155 ~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~-~~~~-~~~~~~--~~--------~~~~~~  222 (254)
T cd06627         155 DDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNP-MAAL-FRIVQD--DH--------PPLPEG  222 (254)
T ss_pred             cccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccH-HHHH-HHHhcc--CC--------CCCCCC
Confidence                     12223333233357889999999999999999999853321 1111 111111  11        111223


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+..+.+++.+||..+|++||++.+++.
T Consensus       223 ~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         223 ISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             CCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence            3457889999999999999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.97  E-value=4.5e-31  Score=274.20  Aligned_cols=247  Identities=19%  Similarity=0.296  Sum_probs=177.7

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cce
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~~  376 (592)
                      ..+.||+|+||.||+|.. .++..+|+|.+......   ......+.+|++++++++|+||+++++++.....    ...
T Consensus        20 ~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   96 (353)
T cd07850          20 NLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQN---VTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQDV   96 (353)
T ss_pred             EEEEeccCCCEEEEEEEECCCCCEEEEEecCccccC---hhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccCcE
Confidence            357899999999999995 46889999987532211   2234567889999999999999999998864431    146


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|+||+. ++|.+.+..    .+++.....++.|++.||+|||+.+  ++||||||+||+++.++.+||+|||+++...
T Consensus        97 ~lv~e~~~-~~l~~~~~~----~l~~~~~~~~~~ql~~aL~~LH~~g--i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  169 (353)
T cd07850          97 YLVMELMD-ANLCQVIQM----DLDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDCTLKILDFGLARTAG  169 (353)
T ss_pred             EEEEeccC-CCHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEECCCCCEEEccCccceeCC
Confidence            89999996 588877752    2788899999999999999999998  9999999999999999999999999988653


Q ss_pred             hhhh--------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHH--------------------
Q 007711          457 MAEM--------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA--------------------  508 (592)
Q Consensus       457 ~~~~--------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~--------------------  508 (592)
                      ....        .+.+++......++.++|||||||++|||++|+.||...+. ...+..                    
T Consensus       170 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (353)
T cd07850         170 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDH-IDQWNKIIEQLGTPSDEFMSRLQPTV  248 (353)
T ss_pred             CCCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHhcCCCCHHHHHHhhhhh
Confidence            3211        12223333334478899999999999999999999953321 111100                    


Q ss_pred             -HHhcCCC-----CCccccCCCC-----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          509 -DYLSGVQ-----PLQQFVDPTL-----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       509 -~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       .+.....     .+........     ..........+.+++.+||+.||++||++.|++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~  310 (353)
T cd07850         249 RNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQ  310 (353)
T ss_pred             hHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhc
Confidence             0000000     0001111000     0001123557889999999999999999999985

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.97  E-value=4.7e-31  Score=266.33  Aligned_cols=239  Identities=21%  Similarity=0.320  Sum_probs=178.6

Q ss_pred             hhcccCcCCCeEEEEEEe----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcce
Q 007711          302 FSNVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.+.||+|+||.||++..    .+|..+|+|.+....... .....+.+.+|++++.++ +|+||+++++++....  ..
T Consensus         4 ~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~--~~   80 (290)
T cd05613           4 LLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQ-KAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDT--KL   80 (290)
T ss_pred             eeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhh-cchHHHHHHHHHHHHHhcccCCChhceeeEeecCC--eE
Confidence            356899999999999985    368899999886432211 122346788899999999 5999999999887766  67


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|+||+++++|.+++...  ..+++.....++.+++.||+|||+.+  ++||||||+|||+++++.+||+|||+++...
T Consensus        81 ~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~~--i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  156 (290)
T cd05613          81 HLILDYINGGELFTHLSQR--ERFKEQEVQIYSGEIVLALEHLHKLG--IIYRDIKLENILLDSNGHVVLTDFGLSKEFH  156 (290)
T ss_pred             EEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHeEECCCCCEEEeeCccceecc
Confidence            8999999999999998643  45788888999999999999999988  9999999999999999999999999987653


Q ss_pred             hhhhh----hcccccCCCCC--------CCCCCcchhhHHHHHHHHhCCCcccCCC--CChHHHHHHHhcCCCCCccccC
Q 007711          457 MAEMA----ATSKKLSSAPS--------ASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLEDWAADYLSGVQPLQQFVD  522 (592)
Q Consensus       457 ~~~~~----~~~~~~~~~~~--------~s~ksDVwSfGvvl~El~tG~~P~~~~~--~~~~~~~~~~~~~~~~~~~~~~  522 (592)
                      .....    ......+.+|+        .+.++||||||+++|||+||+.||....  ....++..........      
T Consensus       157 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~------  230 (290)
T cd05613         157 EDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPP------  230 (290)
T ss_pred             cccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccCCC------
Confidence            32110    00112233333        4678999999999999999999995332  2233333332222111      


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHH
Q 007711          523 PTLSSFDEEQLETLGELIKSCVRADPEKRP-----TMRDIA  558 (592)
Q Consensus       523 ~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~ev~  558 (592)
                           .+......+.+++.+||+.||++||     +.+++.
T Consensus       231 -----~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~  266 (290)
T cd05613         231 -----YPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIK  266 (290)
T ss_pred             -----CCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHH
Confidence                 1222335688999999999999997     555553

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.97  E-value=4.9e-31  Score=268.59  Aligned_cols=252  Identities=17%  Similarity=0.220  Sum_probs=176.4

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC------
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP------  373 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~------  373 (592)
                      .+.+.||+|+||.||+|... ++..+|+|.+.......   .....+.+|++++++++||||++++++|...+.      
T Consensus        15 ~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   91 (310)
T cd07865          15 EKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKE---GFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYK   91 (310)
T ss_pred             EEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcC---CchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCC
Confidence            34578999999999999964 68899999876443221   223456789999999999999999999876431      


Q ss_pred             cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcch
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  453 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~  453 (592)
                      ...++|+||+. ++|.+++.. ....+++.....++.|++.|++|||+.+  ++|+||||+||+++.++.+||+|||++.
T Consensus        92 ~~~~lv~e~~~-~~l~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~~--i~H~dl~p~nil~~~~~~~kl~dfg~~~  167 (310)
T cd07865          92 GSFYLVFEFCE-HDLAGLLSN-KNVKFTLSEIKKVMKMLLNGLYYIHRNK--ILHRDMKAANILITKDGILKLADFGLAR  167 (310)
T ss_pred             ceEEEEEcCCC-cCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHEEECCCCcEEECcCCCcc
Confidence            13589999996 478777753 2346899999999999999999999998  9999999999999999999999999987


Q ss_pred             hhhhhhhh-------hcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCC-hHHHHHHHhcCC----
Q 007711          454 EIAMAEMA-------ATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDWAADYLSGV----  514 (592)
Q Consensus       454 ~~~~~~~~-------~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~-~~~~~~~~~~~~----  514 (592)
                      ........       ......+.+||       ++.++||||||+++|||+||+.||...... ............    
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (310)
T cd07865         168 AFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEV  247 (310)
T ss_pred             cccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhh
Confidence            65322111       00111233444       467899999999999999999998533211 011111111000    


Q ss_pred             ----CC---CccccCCC-CC-CC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          515 ----QP---LQQFVDPT-LS-SF-----DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       515 ----~~---~~~~~~~~-~~-~~-----~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          ..   ......+. .. ..     .......+.+++.+||+.||++||+++|+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~  306 (310)
T cd07865         248 WPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALN  306 (310)
T ss_pred             cccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence                00   00000000 00 00     0011245779999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.97  E-value=2e-31  Score=274.69  Aligned_cols=250  Identities=17%  Similarity=0.212  Sum_probs=178.2

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC--CcceEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE--PFTRMM  378 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~--~~~~~l  378 (592)
                      +.+.||+|+||.||+|.. .+|..|++|.+......   ....+.+.+|+.++++++|+||+++++++....  ....++
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l   85 (334)
T cd07855           9 PIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDV---PTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVYV   85 (334)
T ss_pred             eeeeeecCCCeEEEEEEEcCCCCEEEEEEecccccc---ccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEEE
Confidence            347899999999999995 46889999988643221   123456778999999999999999999875432  125789


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |+||+. |+|.+++...  ..+++.....++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++.....
T Consensus        86 v~e~~~-~~l~~~~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  160 (334)
T cd07855          86 VMDLME-SDLHHIIHSD--QPLTEEHIRYFLYQLLRGLKYIHSAN--VIHRDLKPSNLLVNEDCELRIGDFGMARGLSSS  160 (334)
T ss_pred             EEehhh-hhHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEcCCCcEEecccccceeeccc
Confidence            999995 6898888633  45899999999999999999999998  999999999999999999999999998765322


Q ss_pred             hh-------------hhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChH-HHHHHHhcCC---------
Q 007711          459 EM-------------AATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE-DWAADYLSGV---------  514 (592)
Q Consensus       459 ~~-------------~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~-~~~~~~~~~~---------  514 (592)
                      ..             .+.+++.. ....++.++|||||||++|||++|+.||...+.... ..........         
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~  240 (334)
T cd07855         161 PTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIG  240 (334)
T ss_pred             CcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhc
Confidence            11             11122221 123367899999999999999999999954321100 0000000000         


Q ss_pred             -CCCccc---cCCC----CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          515 -QPLQQF---VDPT----LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       515 -~~~~~~---~~~~----~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       ......   ....    ........+..+.+++.+||+.+|++||++.+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  293 (334)
T cd07855         241 SDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQ  293 (334)
T ss_pred             hhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence             000000   0000    00011223567999999999999999999999876

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.97  E-value=3.5e-31  Score=273.06  Aligned_cols=258  Identities=14%  Similarity=0.216  Sum_probs=182.0

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCch---------hHHHHHHHHHHHHhcCCCCceeeeeEEEecCC
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPK---------NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  372 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~---------~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  372 (592)
                      .+.||+|+||.||+|... ++..||+|.+..........         .....+.+|++++++++|+||+++++++...+
T Consensus        14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   93 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD   93 (335)
T ss_pred             hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence            467999999999999954 68899999886433221000         01225778999999999999999999998776


Q ss_pred             CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcc
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  452 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla  452 (592)
                        ..++||||++ |+|.+++..  ...+++.....++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||++
T Consensus        94 --~~~lv~e~~~-~~l~~~l~~--~~~~~~~~~~~~~~ql~~aL~~LH~~~--i~H~dl~~~nill~~~~~~kl~dfg~~  166 (335)
T PTZ00024         94 --FINLVMDIMA-SDLKKVVDR--KIRLTESQVKCILLQILNGLNVLHKWY--FMHRDLSPANIFINSKGICKIADFGLA  166 (335)
T ss_pred             --cEEEEEeccc-cCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eecccccHHHeEECCCCCEEECCccce
Confidence              6799999996 689888853  345888999999999999999999998  999999999999999999999999998


Q ss_pred             hhhhhhh--------------hh---hcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHH--
Q 007711          453 NEIAMAE--------------MA---ATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDW--  506 (592)
Q Consensus       453 ~~~~~~~--------------~~---~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~--  506 (592)
                      +......              ..   ......+.+||       ++.++|||||||++|||+||+.||...+. ....  
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~-~~~~~~  245 (335)
T PTZ00024        167 RRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENE-IDQLGR  245 (335)
T ss_pred             eecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHH
Confidence            7654110              00   00111233443       47789999999999999999999953321 1111  


Q ss_pred             HHHHhcCCCC--Cc------------cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCC
Q 007711          507 AADYLSGVQP--LQ------------QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  570 (592)
Q Consensus       507 ~~~~~~~~~~--~~------------~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~  570 (592)
                      +.........  +.            ....+............+.+++.+||+.+|++||+++|++.  .......+.
T Consensus       246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~--~~~~~~~~~  321 (335)
T PTZ00024        246 IFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALK--HEYFKSDPL  321 (335)
T ss_pred             HHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhc--CcccCCCCC
Confidence            1111110000  00            00000000111123456889999999999999999999986  444444333

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.97  E-value=8.1e-31  Score=258.30  Aligned_cols=230  Identities=23%  Similarity=0.305  Sum_probs=178.4

Q ss_pred             cCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeCC
Q 007711          306 IGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  384 (592)
Q Consensus       306 lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~~  384 (592)
                      ||+|+||.||++... ++..+++|.+.......  ......+..|++++++++|+||+++++.+....  ..++||||++
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~e~~~   76 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIK--RKEVEHTLTERNILSRINHPFIVKLHYAFQTEE--KLYLVLEYAP   76 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcc--hHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCC--eeEEEEecCC
Confidence            699999999999975 58899999876543322  234567899999999999999999999987766  6799999999


Q ss_pred             CCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-----
Q 007711          385 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-----  459 (592)
Q Consensus       385 ~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-----  459 (592)
                      +++|.+++...  ..+++.....++.+++.|+.|||+.+  ++|+||+|+||+++.++.++|+|||++.......     
T Consensus        77 ~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lh~~~--~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~  152 (250)
T cd05123          77 GGELFSHLSKE--GRFSEERARFYAAEIVLALEYLHSLG--IIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNT  152 (250)
T ss_pred             CCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccC
Confidence            99999998633  36899999999999999999999988  9999999999999999999999999987654321     


Q ss_pred             ----hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHH
Q 007711          460 ----MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET  535 (592)
Q Consensus       460 ----~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  535 (592)
                          ..+.+++.......+.++|+||||+++||+++|+.||...+  ..+..........           .++...+..
T Consensus       153 ~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~--~~~~~~~~~~~~~-----------~~~~~~~~~  219 (250)
T cd05123         153 FCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAED--RKEIYEKILKDPL-----------RFPEFLSPE  219 (250)
T ss_pred             CcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHhcCCC-----------CCCCCCCHH
Confidence                11222333222335778999999999999999999995332  2333333222111           112222456


Q ss_pred             HHHHHHHhcccCCCCCCCHHH
Q 007711          536 LGELIKSCVRADPEKRPTMRD  556 (592)
Q Consensus       536 l~~l~~~Cl~~dP~~RPs~~e  556 (592)
                      +.+++.+||..||++||++.+
T Consensus       220 l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         220 ARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             HHHHHHHHhcCCHhhCCCccc
Confidence            889999999999999999954

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.97  E-value=3e-31  Score=265.88  Aligned_cols=237  Identities=23%  Similarity=0.303  Sum_probs=181.5

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.+.||+|+||.||+|... ++..+++|++......  .....+.+.+|++++++++ |+||+++++++...+  ..++|
T Consensus         5 ~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~--~~~lv   80 (280)
T cd05581           5 FGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLI--KEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEE--NLYFV   80 (280)
T ss_pred             EeeeecCCCceEEEEEEEcCCCCEEEEEEechHhcc--chHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCc--eEEEE
Confidence            4578999999999999964 6889999987643221  1233567889999999998 999999999988776  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++++|.+++...  ..+++.....++.+++.|++|||+.+  ++|+||+|+||+++.++.++++|||++.......
T Consensus        81 ~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~ql~~~l~~Lh~~~--~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~  156 (280)
T cd05581          81 LEYAPNGELLQYIRKY--GSLDEKCTRFYAAEILLALEYLHSKG--IIHRDLKPENILLDKDMHIKITDFGTAKVLDPNS  156 (280)
T ss_pred             EcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHeEECCCCCEEecCCccccccCCcc
Confidence            9999999999998643  46899999999999999999999998  9999999999999999999999999987653221


Q ss_pred             h-----------------------------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHH
Q 007711          460 M-----------------------------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY  510 (592)
Q Consensus       460 ~-----------------------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~  510 (592)
                      .                             .+.+++.......+.++||||||+++||+++|+.||....  ........
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~--~~~~~~~~  234 (280)
T cd05581         157 SPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSN--EYLTFQKI  234 (280)
T ss_pred             ccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHH
Confidence            1                             0111221122236778999999999999999999995332  12222222


Q ss_pred             hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCH----HHHHH
Q 007711          511 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTM----RDIAA  559 (592)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~----~ev~~  559 (592)
                      .....           ..+...++.+.+++.+||+.+|.+||++    ++++.
T Consensus       235 ~~~~~-----------~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         235 LKLEY-----------SFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             HhcCC-----------CCCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence            21111           1122224578899999999999999999    66653

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=9.9e-31  Score=255.93  Aligned_cols=240  Identities=21%  Similarity=0.292  Sum_probs=182.7

Q ss_pred             hhcccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||.|.-|+||.+++++ +..+|+|++.+.....  .....+...|-++|+.++||.++.|++.+..++  ..|++|
T Consensus        81 llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~--rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~--~~cl~m  156 (459)
T KOG0610|consen   81 LLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLAS--RKKLKRAQTEREILSLLDHPFLPTLYASFETDK--YSCLVM  156 (459)
T ss_pred             HHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhh--hhHHHHHHHHHHHHHhcCCCccchhhheeeccc--eeEEEE
Confidence            34679999999999999865 4889999987654432  222345667888999999999999999999887  789999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      |||+||+|..+.+......++.....-+|.+|.-||+|||-.+  ||.|||||+||||-++|++-|+||.++........
T Consensus       157 eyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlG--ivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt  234 (459)
T KOG0610|consen  157 EYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLG--IVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPT  234 (459)
T ss_pred             ecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhc--eeeccCCcceeEEecCCcEEeeeccccccCCCCCe
Confidence            9999999999998778888999999999999999999999999  99999999999999999999999988654321000


Q ss_pred             ------------------------------hhc-----------------------------ccccCCCCCC------CC
Q 007711          461 ------------------------------AAT-----------------------------SKKLSSAPSA------SL  475 (592)
Q Consensus       461 ------------------------------~~~-----------------------------~~~~~~~~~~------s~  475 (592)
                                                    ...                             .++-|.+||+      +.
T Consensus       235 ~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgs  314 (459)
T KOG0610|consen  235 LVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGS  314 (459)
T ss_pred             eeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCc
Confidence                                          000                             0011223332      55


Q ss_pred             CCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCC--
Q 007711          476 ESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT--  553 (592)
Q Consensus       476 ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs--  553 (592)
                      ++|+|+|||++|||+.|+.||.+.+.  .+-...++.+.-.+        .. ..+.+..+.+||++-+.+||.+|..  
T Consensus       315 AVDWWtfGIflYEmLyG~TPFKG~~~--~~Tl~NIv~~~l~F--------p~-~~~vs~~akDLIr~LLvKdP~kRlg~~  383 (459)
T KOG0610|consen  315 AVDWWTFGIFLYEMLYGTTPFKGSNN--KETLRNIVGQPLKF--------PE-EPEVSSAAKDLIRKLLVKDPSKRLGSK  383 (459)
T ss_pred             hhhHHHHHHHHHHHHhCCCCcCCCCc--hhhHHHHhcCCCcC--------CC-CCcchhHHHHHHHHHhccChhhhhccc
Confidence            78999999999999999999954432  22233333221111        11 1244567999999999999999998  


Q ss_pred             --HHHHH
Q 007711          554 --MRDIA  558 (592)
Q Consensus       554 --~~ev~  558 (592)
                        +.||.
T Consensus       384 rGA~eIK  390 (459)
T KOG0610|consen  384 RGAAEIK  390 (459)
T ss_pred             cchHHhh
Confidence              55553

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.97  E-value=5e-31  Score=272.65  Aligned_cols=262  Identities=16%  Similarity=0.215  Sum_probs=185.6

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cce
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~~  376 (592)
                      +.+.||+|+||.||++.. .++..||||.+.....   .......+.+|++++++++|+||+++++++.....    ...
T Consensus        19 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   95 (343)
T cd07880          19 DLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQ---SELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDF   95 (343)
T ss_pred             EEEEeeecCCeEEEEEEECCCCcEEEEEEeccccc---chHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccccceE
Confidence            357899999999999985 4688999998753221   12345578899999999999999999998865432    134


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|+||+ +++|.+++.   ...+++..+..++.+++.|++|||+.+  |+||||||+||+++.++.+||+|||+++...
T Consensus        96 ~lv~e~~-~~~l~~~~~---~~~l~~~~~~~i~~qi~~al~~LH~~g--i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~  169 (343)
T cd07880          96 YLVMPFM-GTDLGKLMK---HEKLSEDRIQFLVYQMLKGLKYIHAAG--IIHRDLKPGNLAVNEDCELKILDFGLARQTD  169 (343)
T ss_pred             EEEEecC-CCCHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEeecccccccc
Confidence            8999999 678888775   246899999999999999999999998  9999999999999999999999999987654


Q ss_pred             hhhhhhcccccCCCC-------CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC-------------
Q 007711          457 MAEMAATSKKLSSAP-------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP-------------  516 (592)
Q Consensus       457 ~~~~~~~~~~~~~~~-------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~-------------  516 (592)
                      ...........+++|       .++.++|||||||++||+++|+.||....  ..............             
T Consensus       170 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (343)
T cd07880         170 SEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHD--HLDQLMEIMKVTGTPSKEFVQKLQSED  247 (343)
T ss_pred             cCccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHhcCCCCHHHHHhhcchh
Confidence            322111111122233       35778999999999999999999995332  11111111111000             


Q ss_pred             -------CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHH--HHHHhhhCCCCCCCCC
Q 007711          517 -------LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIA--AILREITGITPDGAIP  574 (592)
Q Consensus       517 -------~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~--~~L~~i~~~~~~~~~p  574 (592)
                             ...................+.+++.+|++.||++|||+.+++  ..++.......+...|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~~~~~~~~~~~  314 (343)
T cd07880         248 AKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHDPEDETEAP  314 (343)
T ss_pred             HHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhhcCcccccCCC
Confidence                   000000000011122345688999999999999999999998  4566665544444333

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=5.2e-31  Score=271.89  Aligned_cols=257  Identities=15%  Similarity=0.164  Sum_probs=181.7

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC---cceE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRM  377 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~---~~~~  377 (592)
                      ..+.||+|+||.||+|.. .++..|++|.+......   ......+.+|+.+++.++|+||+++++++.....   ...+
T Consensus         9 ~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~   85 (337)
T cd07858           9 PIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDN---RIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDVY   85 (337)
T ss_pred             EEEEeccCCCeEEEEEEecCCCCeEEEEEecccccc---cchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcEE
Confidence            346899999999999985 46889999987643211   1234567789999999999999999998864321   1469


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +|+||+. ++|.+++..  ...+++.....++.+++.||.|||+.+  ++||||||+||+++.++.+||+|||+++....
T Consensus        86 lv~e~~~-~~L~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~--i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~  160 (337)
T cd07858          86 IVYELMD-TDLHQIIRS--SQTLSDDHCQYFLYQLLRGLKYIHSAN--VLHRDLKPSNLLLNANCDLKICDFGLARTTSE  160 (337)
T ss_pred             EEEeCCC-CCHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEcCCCCEEECcCccccccCC
Confidence            9999996 688888753  346899999999999999999999998  99999999999999999999999999886533


Q ss_pred             hhh---------hhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCCh-HHHHHHHhcCC----------CC
Q 007711          458 AEM---------AATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-EDWAADYLSGV----------QP  516 (592)
Q Consensus       458 ~~~---------~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~-~~~~~~~~~~~----------~~  516 (592)
                      ...         .+.+++... ...++.++|||||||++|||++|+.||...+... ...........          ..
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (337)
T cd07858         161 KGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEK  240 (337)
T ss_pred             CcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchh
Confidence            211         112222211 1236788999999999999999999995332100 00000000000          00


Q ss_pred             -------CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhhhC
Q 007711          517 -------LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI--LREITG  566 (592)
Q Consensus       517 -------~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~--L~~i~~  566 (592)
                             .....++......+..+.++.+++.+||+.+|++||+++|+++.  ++.+..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~  299 (337)
T cd07858         241 ARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHD  299 (337)
T ss_pred             hhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcC
Confidence                   00000000001112344678899999999999999999999876  665533

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.97  E-value=7e-31  Score=267.58  Aligned_cols=249  Identities=18%  Similarity=0.173  Sum_probs=176.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC------c
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP------F  374 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~------~  374 (592)
                      +.+.||+|+||.||+|... ++..+++|.+......+   .....+.+|++++++++|+||+++++++.....      .
T Consensus        12 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   88 (311)
T cd07866          12 ILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKD---GFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRKRG   88 (311)
T ss_pred             EEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCC---CcchhHHHHHHHHHhcCCCCccchhhheecccccccccCc
Confidence            4578999999999999964 58899999886544332   123457789999999999999999998754331      1


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..++|+||+.. +|...+.. ....+++.....++.++++||+|||+.+  ++||||||+||++++++.+||+|||+++.
T Consensus        89 ~~~lv~~~~~~-~l~~~~~~-~~~~~~~~~~~~i~~~l~~al~~lH~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~  164 (311)
T cd07866          89 SVYMVTPYMDH-DLSGLLEN-PSVKLTESQIKCYMLQLLEGINYLHENH--ILHRDIKAANILIDNQGILKIADFGLARP  164 (311)
T ss_pred             eEEEEEecCCc-CHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEECCCCCEEECcCccchh
Confidence            36899999965 67666643 3346899999999999999999999998  99999999999999999999999999876


Q ss_pred             hhhhhhhhc--------------ccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcC
Q 007711          455 IAMAEMAAT--------------SKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG  513 (592)
Q Consensus       455 ~~~~~~~~~--------------~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~  513 (592)
                      .........              ....+.+||       ++.++|||||||++|||++|+.||....  ...........
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~--~~~~~~~~~~~  242 (311)
T cd07866         165 YDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKS--DIDQLHLIFKL  242 (311)
T ss_pred             ccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHH
Confidence            532211000              011233443       5778999999999999999999995322  11211111110


Q ss_pred             CC-----------CCcccc----CCCCCC----CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          514 VQ-----------PLQQFV----DPTLSS----FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       514 ~~-----------~~~~~~----~~~~~~----~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..           ......    ......    ........+.+++.+|++.||++|||+.|++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         243 CGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             hCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence            00           000000    000000    00112246889999999999999999998864

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.97  E-value=5.6e-31  Score=264.32  Aligned_cols=246  Identities=18%  Similarity=0.228  Sum_probs=180.4

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|+||.||+|+.. ++..+++|.+......   ....+.+..|++++++++|+|++++++++...+  ..++|+|
T Consensus         4 ~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~~v~e   78 (282)
T cd07829           4 LEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEE---EGIPSTALREISLLKELKHPNIVKLLDVIHTER--KLYLVFE   78 (282)
T ss_pred             ehcccccCcceEEEeeecCCCcEEEEEEecccccc---ccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCC--ceEEEec
Confidence            467999999999999965 4889999988754311   223467888999999999999999999998776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh-
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-  460 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~-  460 (592)
                      |++ ++|.+++.... ..+++..+.+++.+++.|++|||+.+  ++||||+|+||++++++.+||+|||.++....... 
T Consensus        79 ~~~-~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~  154 (282)
T cd07829          79 YCD-MDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHSHR--ILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRT  154 (282)
T ss_pred             CcC-cCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChheEEEcCCCCEEEecCCcccccCCCccc
Confidence            997 58999986432 46899999999999999999999998  99999999999999999999999999876543221 


Q ss_pred             --------hhcccccCCCC-CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcC-----------CCCC---
Q 007711          461 --------AATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG-----------VQPL---  517 (592)
Q Consensus       461 --------~~~~~~~~~~~-~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~-----------~~~~---  517 (592)
                              .+.+++..... .++.++|||||||++||+++|+.||....  ..+........           ....   
T Consensus       155 ~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (282)
T cd07829         155 YTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDS--EIDQLFKIFQILGTPTEESWPGVTKLPDY  232 (282)
T ss_pred             cCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHHHhCCCcHHHHHhhcccccc
Confidence                    11222222222 46778999999999999999999995332  11111111100           0000   


Q ss_pred             ccccCCCCC----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          518 QQFVDPTLS----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       518 ~~~~~~~~~----~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .........    .........+.+++.+||+.+|++||++.+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         233 KPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             cccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence            000000000    000112457899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.97  E-value=3.9e-31  Score=272.77  Aligned_cols=254  Identities=18%  Similarity=0.230  Sum_probs=180.5

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC---cceE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRM  377 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~---~~~~  377 (592)
                      +.+.||+|+||.||+|.. .+|..||+|.+.....    ......+.+|+.++++++|+||+++++++.....   ...+
T Consensus         9 i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   84 (336)
T cd07849           9 NLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEH----QTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDVY   84 (336)
T ss_pred             EEEEEEecCCeEEEEEEEcCCCCeEEEEEeccccc----chhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceEE
Confidence            457899999999999985 4688999998753221    2235668889999999999999999998765431   2468


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +|+||++ ++|.+++.   ...+++.....++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....
T Consensus        85 lv~e~~~-~~l~~~~~---~~~l~~~~~~~i~~ql~~aL~~LH~~~--ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~  158 (336)
T cd07849          85 IVQELME-TDLYKLIK---TQHLSNDHIQYFLYQILRGLKYIHSAN--VLHRDLKPSNLLLNTNCDLKICDFGLARIADP  158 (336)
T ss_pred             EEehhcc-cCHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHEEECCCCCEEECcccceeeccc
Confidence            9999996 47877764   346899999999999999999999998  99999999999999999999999999876532


Q ss_pred             hhhh------hcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHH---HHhcCC--CCCcc
Q 007711          458 AEMA------ATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA---DYLSGV--QPLQQ  519 (592)
Q Consensus       458 ~~~~------~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~---~~~~~~--~~~~~  519 (592)
                      ....      ......+++|+       ++.++|||||||++|||+||+.||...+  ......   ..+...  +....
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~  236 (336)
T cd07849         159 EHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKD--YLHQLNLILGVLGTPSQEDLNC  236 (336)
T ss_pred             cccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHcCCCCHHHHHH
Confidence            2110      01112233443       5778999999999999999999995322  111111   101000  00000


Q ss_pred             ccC----------CCCCCC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhhhCC
Q 007711          520 FVD----------PTLSSF-----DEEQLETLGELIKSCVRADPEKRPTMRDIAAI--LREITGI  567 (592)
Q Consensus       520 ~~~----------~~~~~~-----~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~--L~~i~~~  567 (592)
                      +.+          +.....     ......++.+++.+||+.||++||++.|+++.  ++.....
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~~~  301 (336)
T cd07849         237 IISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYHDP  301 (336)
T ss_pred             hhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccCCC
Confidence            000          000000     01123568899999999999999999999885  5555443

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=1.9e-32  Score=249.96  Aligned_cols=241  Identities=20%  Similarity=0.273  Sum_probs=184.5

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||+|.|+.||++.. +.|+.+|+|++..+....   ...+++.+|+.+-+.++|||||+|...+.+..  ..++|
T Consensus        14 ~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~---~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~--~~ylv   88 (355)
T KOG0033|consen   14 DVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSA---RDFQKLEREARICRKLQHPNIVRLHDSIQEES--FHYLV   88 (355)
T ss_pred             hHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhcc---ccHHHHHHHHHHHHhcCCCcEeehhhhhcccc--eeEEE
Confidence            3456799999999999874 578999999887654332   35678899999999999999999998887766  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC---CceEEecCCcchhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED---YAAKLSDLSFWNEIA  456 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~---~~~ki~DfGla~~~~  456 (592)
                      +|+|.+|+|..-+-.+  ..++....-...+|+..+|.|+|..+  |||||+||.|+|+...   --+|++|||++..+.
T Consensus        89 Fe~m~G~dl~~eIV~R--~~ySEa~aSH~~rQiLeal~yCH~n~--IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~  164 (355)
T KOG0033|consen   89 FDLVTGGELFEDIVAR--EFYSEADASHCIQQILEALAYCHSNG--IVHRDLKPENLLLASKAKGAAVKLADFGLAIEVN  164 (355)
T ss_pred             EecccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC--ceeccCChhheeeeeccCCCceeecccceEEEeC
Confidence            9999999997665433  34566667788999999999999999  9999999999999744   357999999999887


Q ss_pred             hhhhhh--cccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          457 MAEMAA--TSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       457 ~~~~~~--~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      .+..+.  .....+++|+      |+..+|||+-||||+-|+.|+.||..++  -.+..+.+..+...+..   +.    
T Consensus       165 ~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~--~~rlye~I~~g~yd~~~---~~----  235 (355)
T KOG0033|consen  165 DGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED--QHRLYEQIKAGAYDYPS---PE----  235 (355)
T ss_pred             CccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCcc--HHHHHHHHhccccCCCC---cc----
Confidence            333221  1123344444      7888999999999999999999996533  33444455544332221   12    


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+...++..+++++|+..||.+|.|+.|.+.
T Consensus       236 w~~is~~Ak~LvrrML~~dP~kRIta~EAL~  266 (355)
T KOG0033|consen  236 WDTVTPEAKSLIRRMLTVNPKKRITADEALK  266 (355)
T ss_pred             cCcCCHHHHHHHHHHhccChhhhccHHHHhC
Confidence            2334467899999999999999999987653

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.97  E-value=2e-30  Score=258.45  Aligned_cols=226  Identities=16%  Similarity=0.221  Sum_probs=168.3

Q ss_pred             cCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEEEeeC
Q 007711          306 IGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFEYA  383 (592)
Q Consensus       306 lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv~Ey~  383 (592)
                      ||+|+||.||++.. .++..+++|.+.......          .|+.....+ +|+||+++++++...+  ..++||||+
T Consensus        24 lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~----------~e~~~~~~~~~h~~iv~~~~~~~~~~--~~~iv~e~~   91 (267)
T PHA03390         24 LIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA----------IEPMVHQLMKDNPNFIKLYYSVTTLK--GHVLIMDYI   91 (267)
T ss_pred             ecCCCceEEEEEEEcCCCcEEEEEEEehhhcch----------hhHHHHHHhhcCCCEEEEEEEEecCC--eeEEEEEcC
Confidence            59999999999985 467788888875432111          122222222 6999999999998877  679999999


Q ss_pred             CCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC-ceEEecCCcchhhhhhh---
Q 007711          384 PNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAMAE---  459 (592)
Q Consensus       384 ~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~-~~ki~DfGla~~~~~~~---  459 (592)
                      ++|+|.+++...  ..++|.....++.|+++|+.|||+.+  ++||||||+||+++.++ .++|+|||+++......   
T Consensus        92 ~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~  167 (267)
T PHA03390         92 KDGDLFDLLKKE--GKLSEAEVKKIIRQLVEALNDLHKHN--IIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSCYD  167 (267)
T ss_pred             CCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEEeCCCCeEEEecCccceecCCCccCC
Confidence            999999998643  37899999999999999999999998  99999999999999998 99999999987654321   


Q ss_pred             --hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCCh---HHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 007711          460 --MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL---EDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  534 (592)
Q Consensus       460 --~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (592)
                        ..+.+++......++.++|||||||++|||+||+.||.......   ..+.... ..  ..         ......+.
T Consensus       168 ~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~--~~---------~~~~~~~~  235 (267)
T PHA03390        168 GTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQ-QK--KL---------PFIKNVSK  235 (267)
T ss_pred             CCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhh-cc--cC---------CcccccCH
Confidence              12233443333346788999999999999999999996433221   2222111 10  00         11123445


Q ss_pred             HHHHHHHHhcccCCCCCCC-HHHHHH
Q 007711          535 TLGELIKSCVRADPEKRPT-MRDIAA  559 (592)
Q Consensus       535 ~l~~l~~~Cl~~dP~~RPs-~~ev~~  559 (592)
                      .+.+++.+||+.+|.+||+ ++|+++
T Consensus       236 ~~~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        236 NANDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             HHHHHHHHHhccChhhCCchHHHHhc
Confidence            7899999999999999995 688763

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.97  E-value=1.7e-30  Score=268.85  Aligned_cols=246  Identities=17%  Similarity=0.193  Sum_probs=175.4

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cceE
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTRM  377 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~~~  377 (592)
                      .+.||+|+||.||+|.. .++..||+|++......   ....+.+.+|++++++++|+||+++++++.....    ...+
T Consensus        22 ~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   98 (345)
T cd07877          22 LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS---IIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY   98 (345)
T ss_pred             EEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchh---hHHHHHHHHHHHHHHHcCCCcccceeeeeeecccccccccEE
Confidence            47899999999999985 56889999987543211   2234568889999999999999999998864321    1357


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      ++++++ +++|.+++..   ..+++..+..++.++++|++|||+.+  ++||||||+||++++++.+||+|||+++....
T Consensus        99 lv~~~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~  172 (345)
T cd07877          99 LVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSAD--IIHRDLKPSNLAVNEDCELKILDFGLARHTDD  172 (345)
T ss_pred             EEehhc-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCChHHEEEcCCCCEEEecccccccccc
Confidence            888877 7899887753   35899999999999999999999998  99999999999999999999999999876533


Q ss_pred             hhhhhcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC--------------
Q 007711          458 AEMAATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP--------------  516 (592)
Q Consensus       458 ~~~~~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~--------------  516 (592)
                      ..........+.+|+       ++.++|||||||++|||++|+.||....  ..............              
T Consensus       173 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (345)
T cd07877         173 EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTD--HIDQLKLILRLVGTPGAELLKKISSESA  250 (345)
T ss_pred             cccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHhhcccHhH
Confidence            222111122233333       5778999999999999999999994322  11111111110000              


Q ss_pred             ------CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          517 ------LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       517 ------~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                            +..................+.+++.+|++.||.+||++.+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  299 (345)
T cd07877         251 RNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  299 (345)
T ss_pred             HHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhc
Confidence                  0000000000000112346889999999999999999999876

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=7.8e-31  Score=283.59  Aligned_cols=256  Identities=14%  Similarity=0.166  Sum_probs=168.4

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCC--CcEEEEEEeee------------cccCCCchhHHHHHHHHHHHHhcCCCCceeee
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSN--GVEIAVASVSV------------ASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL  364 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~--~~~vavk~~~~------------~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l  364 (592)
                      .+.+.+.||+|+||+||++.++.  +...++|.+..            .............|.+|++++++++|+||+++
T Consensus       149 ~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l  228 (501)
T PHA03210        149 HFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENILKI  228 (501)
T ss_pred             ccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcCcE
Confidence            34456889999999999987542  22222221100            00001112345678899999999999999999


Q ss_pred             eEEEecCCCcceEEEEeeCCCCCchhhccccC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC
Q 007711          365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE---SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED  441 (592)
Q Consensus       365 ~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~---~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~  441 (592)
                      ++++...+  ..++|+|++. ++|.+++....   ...........|+.|++.||+|||+++  |+||||||+|||++.+
T Consensus       229 ~~~~~~~~--~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~g--IiHrDLKP~NILl~~~  303 (501)
T PHA03210        229 EEILRSEA--NTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKK--LIHRDIKLENIFLNCD  303 (501)
T ss_pred             eEEEEECC--eeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEECCC
Confidence            99998877  6789999985 57777664321   122334566789999999999999998  9999999999999999


Q ss_pred             CceEEecCCcchhhhhhh----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCc-ccCCCCChHHHHHHH
Q 007711          442 YAAKLSDLSFWNEIAMAE----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLP-YLVDNGSLEDWAADY  510 (592)
Q Consensus       442 ~~~ki~DfGla~~~~~~~----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P-~~~~~~~~~~~~~~~  510 (592)
                      +.+||+|||+++.+....          ..+.+++......++.++|||||||++|||++|+.+ +..............
T Consensus       304 ~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~  383 (501)
T PHA03210        304 GKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKI  383 (501)
T ss_pred             CCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHH
Confidence            999999999997654221          112233333333468899999999999999998754 433222222222222


Q ss_pred             hcCCCCC-ccccCC-----------CCC----CCC-----HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          511 LSGVQPL-QQFVDP-----------TLS----SFD-----EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       511 ~~~~~~~-~~~~~~-----------~~~----~~~-----~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      +...... ..+.+.           ...    ..+     ......+.+++.+|++.||++|||+.|++.
T Consensus       384 ~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~  453 (501)
T PHA03210        384 IDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLA  453 (501)
T ss_pred             HHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhh
Confidence            2111000 000000           000    000     011235678899999999999999999975

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=4.1e-31  Score=271.01  Aligned_cols=236  Identities=22%  Similarity=0.335  Sum_probs=182.2

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +...||+|.|+.|..|+. ..+..||+|.+......   ....+.+.+|+++|..++|||||+++.+.....  ..++||
T Consensus        60 i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln---~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~--~lylV~  134 (596)
T KOG0586|consen   60 IIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLN---PSKRQKLGREVDIMKSLNHPNIVKLFSVIETEA--TLYLVM  134 (596)
T ss_pred             eeeeeccceeEEEEeeEecCCCceEEEEEehhcccC---hHHHHHHHHHHHHHHhcCCcceeeeeeeeeecc--eeEEEE
Confidence            457899999999999994 46899999988654432   233455889999999999999999999998777  789999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+.+|.+++++...  ..........+..|+..+++|||++.  |||||||++||||+.++++||+|||++..+.....
T Consensus       135 eya~~ge~~~yl~~~--gr~~e~~ar~~F~q~vsaveYcH~k~--ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~  210 (596)
T KOG0586|consen  135 EYASGGELFDYLVKH--GRMKEKEARAKFRQIVSAVEYCHSKN--IVHRDLKAENILLDENMNIKIADFGFSTFFDYGLM  210 (596)
T ss_pred             EeccCchhHHHHHhc--ccchhhhhhhhhHHHHHHHHHHhhcc--eeccccchhhcccccccceeeeccccceeeccccc
Confidence            999999999999632  33344677788899999999999999  99999999999999999999999999998864432


Q ss_pred             --------hhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          461 --------AATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       461 --------~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                              .+.+++.+. ..+.++++|+||+||++|-|+.|..||++..  +.+.-...+.+...+           +--
T Consensus       211 lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~--lk~Lr~rvl~gk~rI-----------p~~  277 (596)
T KOG0586|consen  211 LQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQN--LKELRPRVLRGKYRI-----------PFY  277 (596)
T ss_pred             ccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcc--cccccchheeeeecc-----------cce
Confidence                    223334333 3345889999999999999999999995432  222212222221111           111


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...+..+++++.+-.+|.+|++++++.+
T Consensus       278 ms~dce~lLrk~lvl~Pskr~~~dqim~  305 (596)
T KOG0586|consen  278 MSCDCEDLLRKFLVLNPSKRGPCDQIMK  305 (596)
T ss_pred             eechhHHHHHHhhccCccccCCHHHhhh
Confidence            1124568999999999999999999876

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.97  E-value=2.1e-30  Score=266.16  Aligned_cols=246  Identities=15%  Similarity=0.196  Sum_probs=176.7

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... ++..+++|.+......   ....+.+.+|++++++++||||+++++++..... ..++++
T Consensus        14 ~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~-~~~lv~   89 (328)
T cd07856          14 DLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFST---PVLAKRTYRELKLLKHLRHENIISLSDIFISPLE-DIYFVT   89 (328)
T ss_pred             EEEeecccCCeEEEEEEECCCCCEEEEEEecccccc---cchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCC-cEEEEe
Confidence            3478999999999999854 7889999987543221   2234678899999999999999999998865332 578999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+ +++|.++++.   ..+++.....++.+++.||+|||+.+  ++||||+|+||++++++.+||+|||+++.......
T Consensus        90 e~~-~~~L~~~~~~---~~~~~~~~~~~~~ql~~aL~~LH~~~--iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~~  163 (328)
T cd07856          90 ELL-GTDLHRLLTS---RPLEKQFIQYFLYQILRGLKYVHSAG--VVHRDLKPSNILINENCDLKICDFGLARIQDPQMT  163 (328)
T ss_pred             ehh-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEeECCCCCEEeCccccccccCCCcC
Confidence            999 5688887752   35788888899999999999999998  99999999999999999999999999875432211


Q ss_pred             ------hhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCC-------------ChHHHHHHHhcCCCCCccc
Q 007711          461 ------AATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNG-------------SLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       461 ------~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-------------~~~~~~~~~~~~~~~~~~~  520 (592)
                            .+.+++.... ..++.++|||||||++|||+||+.||.....             ...++....... ... .+
T Consensus       164 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~  241 (328)
T cd07856         164 GYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSE-NTL-RF  241 (328)
T ss_pred             CCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccch-hhH-HH
Confidence                  1222332221 3467789999999999999999999953321             011111111100 000 00


Q ss_pred             cCC--CCCCC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 VDP--TLSSF-----DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ~~~--~~~~~-----~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...  .....     .......+.+++.+||+.+|++||++.+++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~  287 (328)
T cd07856         242 VQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALA  287 (328)
T ss_pred             HhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            000  00000     1123467899999999999999999998865

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.97  E-value=5.3e-31  Score=272.51  Aligned_cols=247  Identities=16%  Similarity=0.198  Sum_probs=178.0

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cce
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~~  376 (592)
                      +.+.||+|+||.||+|... ++..+++|.+......   ......+.+|+.++++++|+|++++++++...+.    ...
T Consensus        19 ~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   95 (343)
T cd07851          19 NLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQS---AIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQDV   95 (343)
T ss_pred             EEEEeccCCceEEEEEEECCCCcEEEEEecccccch---hhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccccE
Confidence            3578999999999999975 5788999987543211   2234567889999999999999999987765442    136


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|+||+ +++|.+++..   ..+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+||+|||++....
T Consensus        96 ~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~ql~~aL~~LH~~g--i~H~dlkp~Nill~~~~~~kL~dfg~~~~~~  169 (343)
T cd07851          96 YLVTHLM-GADLNNIVKC---QKLSDDHIQFLVYQILRGLKYIHSAG--IIHRDLKPSNIAVNEDCELKILDFGLARHTD  169 (343)
T ss_pred             EEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEECCCCCEEEcccccccccc
Confidence            8999999 6699888853   46899999999999999999999998  9999999999999999999999999988654


Q ss_pred             hhhhhhcccccCCCC-------CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCc-cc--------
Q 007711          457 MAEMAATSKKLSSAP-------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ-QF--------  520 (592)
Q Consensus       457 ~~~~~~~~~~~~~~~-------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~-~~--------  520 (592)
                      ...........+.+|       .++.++|||||||++||++||+.||....  ..+............. .+        
T Consensus       170 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~  247 (343)
T cd07851         170 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSD--HIDQLKRIMNLVGTPDEELLQKISSES  247 (343)
T ss_pred             ccccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHhcCCCCHHHHhhccchh
Confidence            321111111222333       35778999999999999999999995322  2222222111100000 00        


Q ss_pred             -----------cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 -----------VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 -----------~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                 ..+............+.+++.+||+.+|++|||+.||+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~  297 (343)
T cd07851         248 ARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALA  297 (343)
T ss_pred             HHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence                       000000000112457889999999999999999999875

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.97  E-value=5.6e-31  Score=273.49  Aligned_cols=258  Identities=22%  Similarity=0.326  Sum_probs=186.8

Q ss_pred             cccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC----CcceEE
Q 007711          304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE----PFTRMM  378 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~----~~~~~l  378 (592)
                      +.||+|+||.||+|+ -..|..||||.+......    ...+...+|+++|++++|+|||++++.-....    .....+
T Consensus        19 e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~----r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vl   94 (732)
T KOG4250|consen   19 ERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSL----RPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVL   94 (732)
T ss_pred             hhhcCCccceeeeecccccccchhHHhhhhhccc----chHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceE
Confidence            569999999999999 457999999988764422    23556788999999999999999998765443    224689


Q ss_pred             EEeeCCCCCchhhcccc-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc--CCC--ceEEecCCcch
Q 007711          379 VFEYAPNGTLFEHIHIK-ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT--EDY--AAKLSDLSFWN  453 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~-~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~--~~~--~~ki~DfGla~  453 (592)
                      |||||++|||+..+... ....|+....+.+..+++.||.|||+++  |+||||||.||++-  +++  .-||+|||.||
T Consensus        95 vmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~--IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Ar  172 (732)
T KOG4250|consen   95 VMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENG--IVHRDLKPGNIVLQIGEDGQSIYKLTDFGAAR  172 (732)
T ss_pred             EEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcC--ceeccCCCCcEEEeecCCCceEEeeecccccc
Confidence            99999999999999753 4567999999999999999999999999  99999999999984  334  35999999999


Q ss_pred             hhhhhhh--------hhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCC--hHHHHHHHhcCCCCCccc-c
Q 007711          454 EIAMAEM--------AATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGS--LEDWAADYLSGVQPLQQF-V  521 (592)
Q Consensus       454 ~~~~~~~--------~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~--~~~~~~~~~~~~~~~~~~-~  521 (592)
                      .......        .+-.|+.+. ...|+.-+|.|||||++||.+||..||....+.  ..+.+.....+...-..+ .
T Consensus       173 el~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~pk~~~~~~~~~~tkkp~~v~i~~  252 (732)
T KOG4250|consen  173 ELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGPKNNKEIMWHIITKKPSGVAIGA  252 (732)
T ss_pred             cCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCccccchhhhhhhccCCCceeEee
Confidence            8865442        122233333 355788899999999999999999999754432  223332222221110000 0


Q ss_pred             C-----C----CCCC----CCHHHHHHHHHHHHHhcccCCCCCC--CHHHHHHHHHhhhCC
Q 007711          522 D-----P----TLSS----FDEEQLETLGELIKSCVRADPEKRP--TMRDIAAILREITGI  567 (592)
Q Consensus       522 ~-----~----~~~~----~~~~~~~~l~~l~~~Cl~~dP~~RP--s~~ev~~~L~~i~~~  567 (592)
                      +     |    ...+    ........+-.++...+..+|++|-  .+.+....+.+|++.
T Consensus       253 ~~~eNgpv~~s~~lP~p~~Ls~~l~~~~~kwLa~~L~~~~~~~~~~~~~~~Fa~~~dIL~~  313 (732)
T KOG4250|consen  253 QEEENGPVEWSSTLPQPNHLSRGLATRLTKWLASMLEWNPRKRGHEGFDRFFAEVDDILNL  313 (732)
T ss_pred             ecccCCceeeeccCCCcccccHHHHhhhhHHHHHHHhhhHHHhCCCCcchHHHHHHHHHhh
Confidence            0     0    0001    1223334556666777777888888  777777777777654

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.6e-32  Score=298.37  Aligned_cols=236  Identities=20%  Similarity=0.319  Sum_probs=183.5

Q ss_pred             cccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      ..||.|.||.||-|. .++|.-.|+|-++.....   ........+|+.++..+.|||+|+++|+-.+++  ..+|.|||
T Consensus      1241 ~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~---~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRe--kv~IFMEy 1315 (1509)
T KOG4645|consen 1241 NFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSD---HKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHRE--KVYIFMEY 1315 (1509)
T ss_pred             cccCCcceeeeEEeecCCccchhhhhhhhcCccc---cccCcchHHHHHHHHhccCccccccCceeecHH--HHHHHHHH
Confidence            689999999999998 567888999987654433   223456788999999999999999999998887  77999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh---
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---  459 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~---  459 (592)
                      |++|+|.+.+..  +...+......+..|++.|++|||+.+  |||||+||.||+++.++.+|.+|||.|+.+....   
T Consensus      1316 C~~GsLa~ll~~--gri~dE~vt~vyt~qll~gla~LH~~g--IVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~ 1391 (1509)
T KOG4645|consen 1316 CEGGSLASLLEH--GRIEDEMVTRVYTKQLLEGLAYLHEHG--IVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTM 1391 (1509)
T ss_pred             hccCcHHHHHHh--cchhhhhHHHHHHHHHHHHHHHHHhcC--ceecCCCccceeeecCCcEEeecccceeEecCchhcC
Confidence            999999999863  334555555667889999999999999  9999999999999999999999999998764321   


Q ss_pred             ----hhhcccccCCCCCC---------CCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          460 ----MAATSKKLSSAPSA---------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       460 ----~~~~~~~~~~~~~~---------s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                          .....+..|++||.         ..+.||||+|||++||+||++||..-+.   +|+--+-        +.-...+
T Consensus      1392 ~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dn---e~aIMy~--------V~~gh~P 1460 (1509)
T KOG4645|consen 1392 PGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDN---EWAIMYH--------VAAGHKP 1460 (1509)
T ss_pred             CHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccc---hhHHHhH--------HhccCCC
Confidence                12233456677774         3357999999999999999999943222   2221111        1111223


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+|+....+-.+++..|++.||++|-++.|+++
T Consensus      1461 q~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1461 QIPERLSSEGRDFLEHCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred             CCchhhhHhHHHHHHHHHhcCchhhhHHHHHHH
Confidence            456666778899999999999999988876654

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.97  E-value=1.3e-30  Score=268.13  Aligned_cols=256  Identities=16%  Similarity=0.190  Sum_probs=185.6

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC---Ccce
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE---PFTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~---~~~~  376 (592)
                      .+.+.||+|+||.||+|+.. ++..+++|.+......   ....+.+.+|+++++.++|+||+++++++....   ....
T Consensus         3 ~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~   79 (330)
T cd07834           3 ELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDD---LIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDV   79 (330)
T ss_pred             eeeeeecCCCCeEEEEEEeCCCCcEEEEEeecccccc---chhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccce
Confidence            34578999999999999965 4889999988643321   234567899999999999999999999987653   1146


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      +++|||++ ++|.+++...  ..+++..+..++.+++.||+|||+.+  ++||||||.||+++.++.++|+|||++....
T Consensus        80 ~lv~e~~~-~~l~~~l~~~--~~l~~~~~~~i~~~l~~~l~~LH~~g--i~H~dlkp~nili~~~~~~~L~dfg~~~~~~  154 (330)
T cd07834          80 YIVTELME-TDLHKVIKSP--QPLTDDHIQYFLYQILRGLKYLHSAN--VIHRDLKPSNILVNSNCDLKICDFGLARGVD  154 (330)
T ss_pred             EEEecchh-hhHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEcccCceEeec
Confidence            89999997 5888888633  37899999999999999999999998  9999999999999999999999999988664


Q ss_pred             hhhh------------hhcccccCCCC-CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC------
Q 007711          457 MAEM------------AATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL------  517 (592)
Q Consensus       457 ~~~~------------~~~~~~~~~~~-~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~------  517 (592)
                      ....            .+.+++..... .++.++||||||+++|||+||+.||....  ..+............      
T Consensus       155 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~  232 (330)
T cd07834         155 PDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRD--YIDQLNLIVEVLGTPSEEDLK  232 (330)
T ss_pred             ccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCC--HHHHHHHHHHhcCCCChhHhh
Confidence            3321            11222222222 46788999999999999999999995332  222221111110000      


Q ss_pred             -------ccccC---C----CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhhhC
Q 007711          518 -------QQFVD---P----TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI--LREITG  566 (592)
Q Consensus       518 -------~~~~~---~----~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~--L~~i~~  566 (592)
                             ...+.   .    .........+..+.+++.+||+.+|++||++++++..  ++++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~  297 (330)
T cd07834         233 FITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHD  297 (330)
T ss_pred             hccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhcc
Confidence                   00000   0    0000111234578899999999999999999999973  665544

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.97  E-value=2e-30  Score=268.10  Aligned_cols=246  Identities=15%  Similarity=0.161  Sum_probs=174.4

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC------
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP------  373 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~------  373 (592)
                      .+.+.||.|+||.||+|.. .+|..|++|.+.....     ...+.+.+|++++++++|+||+++++++.....      
T Consensus         8 ~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~-----~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (342)
T cd07854           8 MDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDP-----QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDV   82 (342)
T ss_pred             EEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCC-----chHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccc
Confidence            3457899999999999986 4688999998865432     234668899999999999999999987654321      


Q ss_pred             ------cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc-CCCceEE
Q 007711          374 ------FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKL  446 (592)
Q Consensus       374 ------~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~-~~~~~ki  446 (592)
                            ...++|+||++ ++|.+++..   ..+++.....++.|++.|+.|||+.+  ++||||||+||+++ ++..+|+
T Consensus        83 ~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~g--ivH~dikp~Nili~~~~~~~kl  156 (342)
T cd07854          83 GSLTELNSVYIVQEYME-TDLANVLEQ---GPLSEEHARLFMYQLLRGLKYIHSAN--VLHRDLKPANVFINTEDLVLKI  156 (342)
T ss_pred             ccccccceEEEEeeccc-ccHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEcCCCceEEE
Confidence                  13589999997 588887742   35889999999999999999999998  99999999999998 4568899


Q ss_pred             ecCCcchhhhhhh------------hhhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcC
Q 007711          447 SDLSFWNEIAMAE------------MAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG  513 (592)
Q Consensus       447 ~DfGla~~~~~~~------------~~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~  513 (592)
                      +|||+++......            ..+.+++.. ....++.++|||||||++|||++|+.||....  ..+........
T Consensus       157 ~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~--~~~~~~~~~~~  234 (342)
T cd07854         157 GDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAH--ELEQMQLILES  234 (342)
T ss_pred             CCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHh
Confidence            9999987542111            112223321 12235778999999999999999999995322  11111111110


Q ss_pred             CCC------------Ccc-----ccCCCC--CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          514 VQP------------LQQ-----FVDPTL--SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       514 ~~~------------~~~-----~~~~~~--~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...            ...     ...+..  .........++.+++.+||+.||++||++.|++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~  299 (342)
T cd07854         235 VPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALM  299 (342)
T ss_pred             cCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence            000            000     000000  0001122356889999999999999999999984

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-30  Score=242.00  Aligned_cols=239  Identities=18%  Similarity=0.277  Sum_probs=173.3

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEEE
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ...||.|..|.|+|.+++ .|...|||......-    ++..+.+...++++.+- +.|.||+.+||+....  .+++-|
T Consensus        97 l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~N----kee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~--dV~IcM  170 (391)
T KOG0983|consen   97 LGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGN----KEENKRILMDLDVVLKSHDCPYIVQCFGYFITNT--DVFICM  170 (391)
T ss_pred             HHhhcCCCccceEEEEEcccceEEEEEeecccCC----HHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCc--hHHHHH
Confidence            356999999999999965 588899998754332    23455677778877766 4899999999998876  567888


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      |.|.. .+..+++ +-...++..-.-++...+.+||.||.++. .|+|||+||+|||+|+.|++|++|||++..+..+..
T Consensus       171 elMs~-C~ekLlk-rik~piPE~ilGk~tva~v~AL~YLKeKH-~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkA  247 (391)
T KOG0983|consen  171 ELMST-CAEKLLK-RIKGPIPERILGKMTVAIVKALYYLKEKH-GVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKA  247 (391)
T ss_pred             HHHHH-HHHHHHH-HhcCCchHHhhhhhHHHHHHHHHHHHHhc-ceeecccCccceEEccCCCEEeecccccceeecccc
Confidence            98843 3444443 33456777777788999999999996542 399999999999999999999999999877643321


Q ss_pred             h--hcccccCCC---------CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          461 A--ATSKKLSSA---------PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       461 ~--~~~~~~~~~---------~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      .  .+....+++         +.|..++|||||||+++||.||+.||...+.+.+-. ...+.++       .|.+.. .
T Consensus       248 htrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~l-tkvln~e-------PP~L~~-~  318 (391)
T KOG0983|consen  248 HTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVL-TKVLNEE-------PPLLPG-H  318 (391)
T ss_pred             cccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHH-HHHHhcC-------CCCCCc-c
Confidence            1  111122333         347888999999999999999999997666554432 2233221       122211 1


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..-+..+.+++..|+++|+.+||...++++
T Consensus       319 ~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~  348 (391)
T KOG0983|consen  319 MGFSPDFQSFVKDCLTKDHRKRPKYNKLLE  348 (391)
T ss_pred             cCcCHHHHHHHHHHhhcCcccCcchHHHhc
Confidence            112346889999999999999999988764

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.97  E-value=6.4e-30  Score=263.27  Aligned_cols=248  Identities=16%  Similarity=0.174  Sum_probs=174.7

Q ss_pred             hhcccCcCCCeEEEEEEeC-C--CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecC--CCcc
Q 007711          302 FSNVIGSSPIGTVYKGTLS-N--GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEE--EPFT  375 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~--~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~--~~~~  375 (592)
                      +.+.||+|+||.||++... .  +..+|+|.+......   ....+.+.+|++++.++ +|+||+++++++...  ....
T Consensus         4 ~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           4 LIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSK---KILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             EEEEccccCCeEEEEEEeCCCCcCceEEEEEecccccc---chhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            4578999999999999964 3  678999987543211   22356788899999999 599999999976432  1124


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++++||+. ++|.+++..  ...+++..+..++.|++.||+|||+.+  ++||||||+||++++++.+||+|||+++..
T Consensus        81 ~~~~~e~~~-~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~g--ivH~dlkp~Nili~~~~~~kl~Dfg~a~~~  155 (332)
T cd07857          81 LYLYEELME-ADLHQIIRS--GQPLTDAHFQSFIYQILCGLKYIHSAN--VLHRDLKPGNLLVNADCELKICDFGLARGF  155 (332)
T ss_pred             EEEEEeccc-CCHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHeEEcCCCCEEeCcCCCceec
Confidence            678889886 689888753  356899999999999999999999998  999999999999999999999999998765


Q ss_pred             hhhhhh-------hcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC-----
Q 007711          456 AMAEMA-------ATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP-----  516 (592)
Q Consensus       456 ~~~~~~-------~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~-----  516 (592)
                      ......       ......+.+|+       ++.++|||||||++||+++|+.||...+  ..............     
T Consensus       156 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~  233 (332)
T cd07857         156 SENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKD--YVDQLNQILQVLGTPDEET  233 (332)
T ss_pred             ccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCC--HHHHHHHHHHHhCCCCHHH
Confidence            321110       01112233444       5678999999999999999999985322  11111111100000     


Q ss_pred             ---------------CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          517 ---------------LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       517 ---------------~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                     ...................+.+++.+|++.||++||++.+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~  291 (332)
T cd07857         234 LSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALE  291 (332)
T ss_pred             HHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence                           0000000000011112457889999999999999999999874

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.97  E-value=4.5e-30  Score=223.90  Aligned_cols=245  Identities=17%  Similarity=0.232  Sum_probs=179.6

Q ss_pred             cccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      ++||+|.||+||||+ ++.+..||+|.+......+.   .-....+|+-++++++|.|||+++++...++  ..-+|+||
T Consensus         8 ekigegtygtvfkarn~~t~eivalkrvrlddddeg---vpssalreicllkelkhknivrl~dvlhsdk--kltlvfe~   82 (292)
T KOG0662|consen    8 EKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEG---VPSSALREICLLKELKHKNIVRLHDVLHSDK--KLTLVFEF   82 (292)
T ss_pred             HhhcCCcceeeEecccCCccceEEEEEEeccCCCCC---CcHHHHHHHHHHHHhhhcceeehhhhhccCc--eeEEeHHH
Confidence            569999999999999 55688899999987655442   2345678999999999999999999988777  67899999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhhhh
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA  462 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~~~  462 (592)
                      |.. +|..+... -...++......++.|+.+|+.|+|+.+  +.||||||.|.||+.+++.|++|||+++.++.....+
T Consensus        83 cdq-dlkkyfds-lng~~d~~~~rsfmlqllrgl~fchshn--vlhrdlkpqnllin~ngelkladfglarafgipvrcy  158 (292)
T KOG0662|consen   83 CDQ-DLKKYFDS-LNGDLDPEIVRSFMLQLLRGLGFCHSHN--VLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCY  158 (292)
T ss_pred             hhH-HHHHHHHh-cCCcCCHHHHHHHHHHHHhhhhhhhhhh--hhhccCCcceEEeccCCcEEecccchhhhcCCceEee
Confidence            965 77666643 3456888889999999999999999999  9999999999999999999999999999887655433


Q ss_pred             ccc---ccCC-------CCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCc--------cccCC
Q 007711          463 TSK---KLSS-------APSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQ--------QFVDP  523 (592)
Q Consensus       463 ~~~---~~~~-------~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~  523 (592)
                      .+.   .+++       +.-|++..|+||-||++.|+.. |++-|.  +.+..+....+....+...        ++-|.
T Consensus       159 saevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfp--g~dvddqlkrif~~lg~p~ed~wps~t~lpdy  236 (292)
T KOG0662|consen  159 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP--GNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDY  236 (292)
T ss_pred             eceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCC--CCcHHHHHHHHHHHhCCCccccCCccccCCCC
Confidence            322   2333       3337889999999999999998 776663  3334444433332211111        11111


Q ss_pred             CC-CCCC---------HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          524 TL-SSFD---------EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       524 ~~-~~~~---------~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .. +.++         +.....=++++...+.-+|.+|.++++.++
T Consensus       237 k~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalq  282 (292)
T KOG0662|consen  237 KPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQ  282 (292)
T ss_pred             cccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhc
Confidence            10 0111         111223457777777889999999987654

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.97  E-value=5.5e-30  Score=250.67  Aligned_cols=214  Identities=18%  Similarity=0.224  Sum_probs=162.2

Q ss_pred             CCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeCCCCC
Q 007711          309 SPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGT  387 (592)
Q Consensus       309 G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~~~gs  387 (592)
                      |.||.||+++. .+++.+|+|.+....          .+.+|...+....||||+++++++...+  ..++||||+++|+
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~lv~e~~~~~~   71 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS----------EYSRERLTIIPHCVPNMVCLHKYIVSED--SVFLVLQHAEGGK   71 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh----------hhhhHHHHHHhcCCCceeehhhheecCC--eEEEEEecCCCCC
Confidence            89999999995 468899999875432          2334555555667999999999988776  6799999999999


Q ss_pred             chhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh------h
Q 007711          388 LFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM------A  461 (592)
Q Consensus       388 L~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~------~  461 (592)
                      |.+++...  ..+++.....++.+++.||+|||+.+  ++||||||+||+++.++.++++|||.+........      .
T Consensus        72 L~~~l~~~--~~l~~~~~~~~~~ql~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~  147 (237)
T cd05576          72 LWSHISKF--LNIPEECVKRWAAEMVVALDALHREG--IVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENM  147 (237)
T ss_pred             HHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHEEEcCCCCEEEecccchhccccccccCCcCcc
Confidence            99988632  35899999999999999999999998  99999999999999999999999998765543211      1


Q ss_pred             hcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q 007711          462 ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIK  541 (592)
Q Consensus       462 ~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  541 (592)
                      +.+++......++.++||||||+++|||++|+.|+......        ...   ...      ...+......+.+++.
T Consensus       148 y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~--------~~~---~~~------~~~~~~~~~~~~~li~  210 (237)
T cd05576         148 YCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSG--------INT---HTT------LNIPEWVSEEARSLLQ  210 (237)
T ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchh--------ccc---ccc------cCCcccCCHHHHHHHH
Confidence            22333333333677899999999999999999887321100        000   000      0112223457889999


Q ss_pred             HhcccCCCCCCCHH
Q 007711          542 SCVRADPEKRPTMR  555 (592)
Q Consensus       542 ~Cl~~dP~~RPs~~  555 (592)
                      +|++.||++||++.
T Consensus       211 ~~l~~dp~~R~~~~  224 (237)
T cd05576         211 QLLQFNPTERLGAG  224 (237)
T ss_pred             HHccCCHHHhcCCC
Confidence            99999999999974

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.96  E-value=1e-30  Score=246.32  Aligned_cols=252  Identities=18%  Similarity=0.224  Sum_probs=178.3

Q ss_pred             hhhcccCcCCCeEEEEEEeCC-----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          301 DFSNVIGSSPIGTVYKGTLSN-----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~-----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +....||+|.||.|||+.-.+     .+.+|+|+++......   .......+|+.++++++|+||+.|..++...+. .
T Consensus        27 e~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~t---GiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~-~  102 (438)
T KOG0666|consen   27 EGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGT---GISMSACREIALLRELKHPNVISLVKVFLSHDK-K  102 (438)
T ss_pred             hccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCC---CcCHHHHHHHHHHHHhcCCcchhHHHHHhccCc-e
Confidence            345789999999999996432     2368888886554322   234556789999999999999999988876322 6


Q ss_pred             eEEEEeeCCCCCchhhccc---cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC----CceEEec
Q 007711          376 RMMVFEYAPNGTLFEHIHI---KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED----YAAKLSD  448 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~---~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~----~~~ki~D  448 (592)
                      +++++||.+. +|.+.++.   .....++..+...|..|+..|+.|||+.-  |.||||||.|||+..+    |.+||+|
T Consensus       103 v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NW--vlHRDLKPaNIlvmgdgperG~VKIaD  179 (438)
T KOG0666|consen  103 VWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNW--VLHRDLKPANILVMGDGPERGRVKIAD  179 (438)
T ss_pred             EEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhh--eeeccCCcceEEEeccCCccCeeEeec
Confidence            8999999987 88887763   23467888999999999999999999999  9999999999999877    9999999


Q ss_pred             CCcchhhhhhhhh------hcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCCh-------HHHHH
Q 007711          449 LSFWNEIAMAEMA------ATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-------EDWAA  508 (592)
Q Consensus       449 fGla~~~~~~~~~------~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~-------~~~~~  508 (592)
                      ||++|.+...-..      ...+.++++||       ||.+.|||+.|||+.||+|-++-|......+       .+...
T Consensus       180 lGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~  259 (438)
T KOG0666|consen  180 LGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLD  259 (438)
T ss_pred             ccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHH
Confidence            9999988543211      11123444444       8999999999999999999877774322111       11111


Q ss_pred             HHhcCCCCCccccCCCCCCCCH--------------H------------HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          509 DYLSGVQPLQQFVDPTLSSFDE--------------E------------QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~--------------~------------~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .++.-.+-..+-.-|.+..+++              .            .....++|+..+++.||-+|.|+++.++
T Consensus       260 rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAle  336 (438)
T KOG0666|consen  260 RIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALE  336 (438)
T ss_pred             HHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhc
Confidence            1111100000001111111111              0            1124789999999999999999998765

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.96  E-value=4e-29  Score=278.59  Aligned_cols=144  Identities=24%  Similarity=0.297  Sum_probs=125.6

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... ++..||+|++.......  ......+.+|++++..++|+||+++++++....  ..++||
T Consensus         8 i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~--~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~--~~~lVm   83 (669)
T cd05610           8 IVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMIN--KNMVHQVQAERDALALSKSPFIVHLYYSLQSAN--NVYLVM   83 (669)
T ss_pred             EEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccC--HHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECC--EEEEEE
Confidence            4578999999999999975 68899999886543221  334567889999999999999999999888776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcch
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  453 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~  453 (592)
                      ||+++|+|.++++.  ...+++...++|+.+|+.||+|||.++  |+||||||+|||++.++.+||+|||+++
T Consensus        84 Ey~~g~~L~~li~~--~~~l~~~~~~~i~~qil~aL~yLH~~g--IiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          84 EYLIGGDVKSLLHI--YGYFDEEMAVKYISEVALALDYLHRHG--IIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             eCCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--EEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            99999999999863  345788899999999999999999998  9999999999999999999999999986

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.96  E-value=6.2e-31  Score=242.85  Aligned_cols=238  Identities=22%  Similarity=0.325  Sum_probs=174.7

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc-CCCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK-VNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~-l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      ..||.|+||+|+|-.. +.|+..|||.+.....    ...+++|+.|.+...+ -+.||||+++|.+...+  ..++-||
T Consensus        70 g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~----~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EG--dcWiCME  143 (361)
T KOG1006|consen   70 GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNI----EKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEG--DCWICME  143 (361)
T ss_pred             HHhcCCcchhhhhhhcCccCcEEEEEEeeeccc----hHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCC--ceeeeHH
Confidence            3599999999999885 4699999999876543    2346788889886544 57999999999998877  7899999


Q ss_pred             eCCCCCchh---hccccCCCCCCHHHHHHHHHHHHHHHHHhh-cCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          382 YAPNGTLFE---HIHIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       382 y~~~gsL~~---~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH-~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      .|.- ||..   +++......++..-.-.|+.-..+||.||- ..+  |+|||+||+|||+|..|.+|++|||++..+..
T Consensus       144 LMd~-SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lk--iIHRDvKPSNILldr~G~vKLCDFGIcGqLv~  220 (361)
T KOG1006|consen  144 LMDI-SLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELK--IIHRDVKPSNILLDRHGDVKLCDFGICGQLVD  220 (361)
T ss_pred             HHhh-hHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhh--hhhccCChhheEEecCCCEeeecccchHhHHH
Confidence            9953 5533   333334566777777788888999999994 456  99999999999999999999999999877643


Q ss_pred             hhh--hhcccccCCCCC--------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          458 AEM--AATSKKLSSAPS--------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       458 ~~~--~~~~~~~~~~~~--------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      +-.  ......-+++||        |..+|||||+|++|+|+.||+.||..=+ +..+.+.....+        ||....
T Consensus       221 SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~-svfeql~~Vv~g--------dpp~l~  291 (361)
T KOG1006|consen  221 SIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWD-SVFEQLCQVVIG--------DPPILL  291 (361)
T ss_pred             HHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHH-HHHHHHHHHHcC--------CCCeec
Confidence            211  111112334443        6788999999999999999999994211 122223333322        222212


Q ss_pred             CCHH---HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          528 FDEE---QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       528 ~~~~---~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+.+   ....+..++.-|+.+|-.+||.+.++.+
T Consensus       292 ~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  292 FDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKK  326 (361)
T ss_pred             CcccccccCHHHHHHHHHHhhcccccCcchhhhhc
Confidence            2222   3356889999999999999999998765

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.96  E-value=8.6e-30  Score=262.74  Aligned_cols=228  Identities=20%  Similarity=0.309  Sum_probs=176.8

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +...+|.|+|+.|-++.. ..++..+||++.....         +-.+|+.++... +|+||+++.+++.+..  ..++|
T Consensus       326 ~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~---------~~~~e~~~~~~~~~h~niv~~~~v~~~~~--~~~~v  394 (612)
T KOG0603|consen  326 FREELGEGSFSAVKYCESSPTDQEPAVKIISKRAD---------DNQDEIPISLLVRDHPNIVKSHDVYEDGK--EIYLV  394 (612)
T ss_pred             cccccCCCCccceeeeeccccccchhheecccccc---------ccccccchhhhhcCCCcceeecceecCCc--eeeee
Confidence            445699999999999884 5688889998865421         223566666555 6999999999999887  78999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE-cCCCceEEecCCcchhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL-TEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl-~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||++.+|-+.+.+....  ... ..+.+|+++++.++.|||+++  +|||||||+|||+ ++.++++|+|||.++.....
T Consensus       395 ~e~l~g~ell~ri~~~~--~~~-~e~~~w~~~lv~Av~~LH~~g--vvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~  469 (612)
T KOG0603|consen  395 MELLDGGELLRRIRSKP--EFC-SEASQWAAELVSAVDYLHEQG--VVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS  469 (612)
T ss_pred             ehhccccHHHHHHHhcc--hhH-HHHHHHHHHHHHHHHHHHhcC--eeecCCChhheeecCCCCcEEEEEechhhhCchh
Confidence            99999998887775332  222 667789999999999999998  9999999999999 58999999999999987654


Q ss_pred             h------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          459 E------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       459 ~------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                      -      ..+.+|+.....++++++|+|||||+||||++|+.||...... .+.......          +   .+.+..
T Consensus       470 ~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~-~ei~~~i~~----------~---~~s~~v  535 (612)
T KOG0603|consen  470 CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG-IEIHTRIQM----------P---KFSECV  535 (612)
T ss_pred             hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch-HHHHHhhcC----------C---cccccc
Confidence            1      1234456656667999999999999999999999999533222 111111111          1   122455


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ++.+.+|+.+|++.||.+||+|.++..
T Consensus       536 S~~AKdLl~~LL~~dP~~Rl~~~~i~~  562 (612)
T KOG0603|consen  536 SDEAKDLLQQLLQVDPALRLGADEIGA  562 (612)
T ss_pred             CHHHHHHHHHhccCChhhCcChhhhcc
Confidence            678999999999999999999999865

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=5.9e-30  Score=250.99  Aligned_cols=246  Identities=18%  Similarity=0.268  Sum_probs=180.3

Q ss_pred             hhcccCcCCCeEEEEEE-eCCCcEEEEEEeeecc--cCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          302 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVAS--AKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~--~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.++||+|+|++|||+. +...+.||||+-....  .........+...+|-++.+.++||.||++++|+.-+.. ..|-
T Consensus       467 lLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtd-sFCT  545 (775)
T KOG1151|consen  467 LLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTD-SFCT  545 (775)
T ss_pred             HHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccc-ccee
Confidence            34789999999999998 5677889998754321  111123445567789999999999999999999975543 4589


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC---CCceEEecCCcchhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEI  455 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~---~~~~ki~DfGla~~~  455 (592)
                      |+|||++.+|.-+|+.  ...++......|+.+|..||.||.+..|||+|-||||.|||+-.   -|.+||+|||+++.+
T Consensus       546 VLEYceGNDLDFYLKQ--hklmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIM  623 (775)
T KOG1151|consen  546 VLEYCEGNDLDFYLKQ--HKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIM  623 (775)
T ss_pred             eeeecCCCchhHHHHh--hhhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhc
Confidence            9999999999888863  45678888999999999999999999999999999999999964   478999999999987


Q ss_pred             hhhhh----------------hhcccccC----CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC
Q 007711          456 AMAEM----------------AATSKKLS----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ  515 (592)
Q Consensus       456 ~~~~~----------------~~~~~~~~----~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~  515 (592)
                      .....                ++..++.+    ..|..+.|+||||.|||+|..+.|+.||..+ .+-.+    ++... 
T Consensus       624 dddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhn-qsQQd----ILqeN-  697 (775)
T KOG1151|consen  624 DDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHN-QSQQD----ILQEN-  697 (775)
T ss_pred             cCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCc-hhHHH----HHhhh-
Confidence            53221                11122211    2455799999999999999999999999422 12111    11110 


Q ss_pred             CCccccCCCCCCCC--HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          516 PLQQFVDPTLSSFD--EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       516 ~~~~~~~~~~~~~~--~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                         -++...-..|+  +.+..+..+++++|++.--++|....++..
T Consensus       698 ---TIlkAtEVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA~  740 (775)
T KOG1151|consen  698 ---TILKATEVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLAC  740 (775)
T ss_pred             ---chhcceeccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHcc
Confidence               01111101111  223356889999999999999988777653

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.96  E-value=1e-29  Score=238.53  Aligned_cols=237  Identities=19%  Similarity=0.295  Sum_probs=180.5

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCC--cceEEE
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEP--FTRMMV  379 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~--~~~~lv  379 (592)
                      ++||-|-.|.|-.+..+ .|..+|+|++.-          ....++|++..-.. .|+|||.+++++...-.  ...++|
T Consensus        68 qvLG~GinGkV~~C~~k~T~ekfALKvL~D----------s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiV  137 (400)
T KOG0604|consen   68 QVLGAGINGKVVQCVHKRTQEKFALKVLLD----------SPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIV  137 (400)
T ss_pred             hhhccccCCceEEEEeccchhhhHHHHHhc----------CHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEee
Confidence            67999999999999854 688888887632          23467888886666 69999999998865321  145789


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC---CCceEEecCCcchhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEIA  456 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~---~~~~ki~DfGla~~~~  456 (592)
                      ||.|++|.|++.+..+..+.++....-+|..+|+.|+.|||+.+  |.||||||+|+|...   |-..|++|||+|+.-.
T Consensus       138 mE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~n--IAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~  215 (400)
T KOG0604|consen  138 MECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMN--IAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQ  215 (400)
T ss_pred             eecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcc--hhhccCChhheeeecCCCCcceEecccccccccC
Confidence            99999999999999888889999999999999999999999999  999999999999974   4578999999999765


Q ss_pred             hhh--hhhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCC--hHHHHHHHhcCCCCCccccCCCCC
Q 007711          457 MAE--MAATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGS--LEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       457 ~~~--~~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      ...  .....+.|+.+|+      |...+|+||+||++|-|+.|.+||....+.  ....-..+..+...+.   +    
T Consensus       216 ~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP---~----  288 (400)
T KOG0604|consen  216 EPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFP---E----  288 (400)
T ss_pred             CCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCC---C----
Confidence            221  1222234554444      677899999999999999999999754331  1111122222211111   1    


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ......++...++++..+..+|.+|.|+.+++.
T Consensus       289 pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~  321 (400)
T KOG0604|consen  289 PEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMD  321 (400)
T ss_pred             hhHhHHHHHHHHHHHHHhcCCchhheeHHHhhc
Confidence            113456778999999999999999999999875

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.96  E-value=1.3e-28  Score=240.49  Aligned_cols=231  Identities=23%  Similarity=0.334  Sum_probs=177.3

Q ss_pred             CCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeCCCCCc
Q 007711          310 PIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL  388 (592)
Q Consensus       310 ~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~~~gsL  388 (592)
                      +||.||+|... ++..+++|.+.......    ..+.|.+|++.+++++|+|++++++++....  ..++++||+++++|
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~----~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--~~~l~~e~~~~~~L   74 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKK----KRERILREISILKKLKHPNIVRLYDVFEDED--KLYLVMEYCDGGDL   74 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEeccccccc----HHHHHHHHHHHHHhCCCCcHHHHHhheeeCC--EEEEEEeCCCCCCH
Confidence            58999999976 48899999886543321    1578999999999999999999999998766  67999999999999


Q ss_pred             hhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh--------h
Q 007711          389 FEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--------M  460 (592)
Q Consensus       389 ~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~--------~  460 (592)
                      .+++....  .+++..+..++.+++++++|||+.+  ++|+||+|+||++++++.++|+|||.+.......        .
T Consensus        75 ~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~  150 (244)
T smart00220       75 FDLLKKRG--RLSEDEARFYARQILSALEYLHSNG--IIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTP  150 (244)
T ss_pred             HHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHcC--eecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCc
Confidence            99886432  3889999999999999999999998  9999999999999999999999999988765421        1


Q ss_pred             hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q 007711          461 AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELI  540 (592)
Q Consensus       461 ~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  540 (592)
                      .+.+++.......+.++||||||+++||+++|+.||... ..................        ......+.++.+++
T Consensus       151 ~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i  221 (244)
T smart00220      151 EYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGD-DQLLELFKKIGKPKPPFP--------PPEWKISPEAKDLI  221 (244)
T ss_pred             CCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC-CcHHHHHHHHhccCCCCc--------cccccCCHHHHHHH
Confidence            122233333344678999999999999999999999532 222222222211111100        00000335788999


Q ss_pred             HHhcccCCCCCCCHHHHHH
Q 007711          541 KSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       541 ~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+||..+|++||++.++++
T Consensus       222 ~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      222 RKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             HHHccCCchhccCHHHHhh
Confidence            9999999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.3e-29  Score=276.28  Aligned_cols=238  Identities=20%  Similarity=0.319  Sum_probs=164.2

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC----------
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE----------  372 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~----------  372 (592)
                      ..||+||||.|||++.+ ||..+|||++.....    ........+|+..+++++|||||+++..+.+..          
T Consensus       485 ~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s----~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~~ei~~  560 (1351)
T KOG1035|consen  485 ELLGKGGFGSVVKVRNKLDGREYAIKKIPLKAS----DKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTVLEIVA  560 (1351)
T ss_pred             HHhcCCCCceEEEEeecccchhhhhhhccCchH----HHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccccccccc
Confidence            57999999999999964 899999999876541    234566788999999999999999853221100          


Q ss_pred             --------------------------------------------------------------------------------
Q 007711          373 --------------------------------------------------------------------------------  372 (592)
Q Consensus       373 --------------------------------------------------------------------------------  372 (592)
                                                                                                      
T Consensus       561 ~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~~e~~~  640 (1351)
T KOG1035|consen  561 SDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSDSEGSV  640 (1351)
T ss_pred             cchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccccccCCcc
Confidence                                                                                            


Q ss_pred             ---------------------------CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 007711          373 ---------------------------PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP  425 (592)
Q Consensus       373 ---------------------------~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~  425 (592)
                                                 +...||-||||+.-.|.++++.+.... .-....++.++|+.||+|+|+.+  
T Consensus       641 ~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~-~~d~~wrLFreIlEGLaYIH~~g--  717 (1351)
T KOG1035|consen  641 ILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNS-QRDEAWRLFREILEGLAYIHDQG--  717 (1351)
T ss_pred             ccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccch-hhHHHHHHHHHHHHHHHHHHhCc--
Confidence                                       012466777777777776665432211 23344578999999999999999  


Q ss_pred             eEeeCcCCCCeEEcCCCceEEecCCcchhhhhh---------------------------hhhhcccccCCC-C--CCCC
Q 007711          426 IAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---------------------------EMAATSKKLSSA-P--SASL  475 (592)
Q Consensus       426 ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~---------------------------~~~~~~~~~~~~-~--~~s~  475 (592)
                      ||||||||.||++|++..+||+|||+++.....                           +..|++|+.... .  .|+.
T Consensus       718 iIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~  797 (1351)
T KOG1035|consen  718 IIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNS  797 (1351)
T ss_pred             eeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccc
Confidence            999999999999999999999999999873210                           011222322211 1  3889


Q ss_pred             CCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHH
Q 007711          476 ESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMR  555 (592)
Q Consensus       476 ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~  555 (592)
                      |+|+||+|||++||+.   ||... ++-...... ++. ..+..-     ..+..+....-..++.+++++||.+|||+.
T Consensus       798 KiDmYSLGIVlFEM~y---PF~Ts-MERa~iL~~-LR~-g~iP~~-----~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~  866 (1351)
T KOG1035|consen  798 KIDMYSLGIVLFEMLY---PFGTS-MERASILTN-LRK-GSIPEP-----ADFFDPEHPEEASLIRWLLSHDPSKRPTAT  866 (1351)
T ss_pred             hhhhHHHHHHHHHHhc---cCCch-HHHHHHHHh-ccc-CCCCCC-----cccccccchHHHHHHHHHhcCCCccCCCHH
Confidence            9999999999999985   56322 111111111 111 111111     222333334456899999999999999999


Q ss_pred             HHHH
Q 007711          556 DIAA  559 (592)
Q Consensus       556 ev~~  559 (592)
                      |++.
T Consensus       867 eLL~  870 (1351)
T KOG1035|consen  867 ELLN  870 (1351)
T ss_pred             HHhh
Confidence            9875

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.96  E-value=3.8e-29  Score=236.43  Aligned_cols=248  Identities=21%  Similarity=0.338  Sum_probs=185.6

Q ss_pred             CHHHHHHHHhhhhcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEE
Q 007711          291 KRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFC  368 (592)
Q Consensus       291 ~~~el~~~~~~~~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~  368 (592)
                      +++|+-+.|   .+.||+|+|+.|--++ +.+|.++|||++.+..     ...+....+|++++...+ |+||+.|+.|+
T Consensus        74 ~F~d~YkLt---~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~-----gHsR~RvfREVe~f~~Cqgh~nilqLiefF  145 (463)
T KOG0607|consen   74 KFEDMYKLT---SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQP-----GHSRSRVFREVETFYQCQGHKNILQLIEFF  145 (463)
T ss_pred             hHHHHHHhH---HHHhcCccceeeeeeeeeccchhhhhhhhhcCC-----chHHHHHHHHHHHHHHhcCCccHHHHHHHh
Confidence            355555554   3579999999999888 6789999999986543     345677889999999995 99999999999


Q ss_pred             ecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC---ceE
Q 007711          369 EEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAK  445 (592)
Q Consensus       369 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~---~~k  445 (592)
                      .+..  ..|||||-|.+|+|..+++.  ...++.....++..+||.||.|||.++  |.||||||+|||-.+-.   -+|
T Consensus       146 Edd~--~FYLVfEKm~GGplLshI~~--~~~F~E~EAs~vvkdia~aLdFlH~kg--IAHRDlKPENiLC~~pn~vsPvK  219 (463)
T KOG0607|consen  146 EDDT--RFYLVFEKMRGGPLLSHIQK--RKHFNEREASRVVKDIASALDFLHTKG--IAHRDLKPENILCESPNKVSPVK  219 (463)
T ss_pred             cccc--eEEEEEecccCchHHHHHHH--hhhccHHHHHHHHHHHHHHHHHHhhcC--cccccCCccceeecCCCCcCcee
Confidence            9888  55999999999999999874  356888899999999999999999999  99999999999986443   479


Q ss_pred             EecCCcchhhhhhhh--hhccc--------ccCCCCC-----------CCCCCcchhhHHHHHHHHhCCCcccCCCCChH
Q 007711          446 LSDLSFWNEIAMAEM--AATSK--------KLSSAPS-----------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE  504 (592)
Q Consensus       446 i~DfGla~~~~~~~~--~~~~~--------~~~~~~~-----------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~  504 (592)
                      |+||.+.........  -...+        .-+++|+           |..++|.||+|||||-|+.|..||.+.-+..-
T Consensus       220 iCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dC  299 (463)
T KOG0607|consen  220 ICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADC  299 (463)
T ss_pred             eeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcC
Confidence            999987654321110  00111        1235555           67889999999999999999999964332222


Q ss_pred             HH-------------HHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          505 DW-------------AADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       505 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .|             +..+..+...+.   |    .-....+.+..+++..-+..|+.+|.++.+++.
T Consensus       300 GWdrGe~Cr~CQ~~LFesIQEGkYeFP---d----kdWahIS~eakdlisnLlvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  300 GWDRGEVCRVCQNKLFESIQEGKYEFP---D----KDWAHISSEAKDLISNLLVRDAKQRLSAAQVLN  360 (463)
T ss_pred             CccCCCccHHHHHHHHHHHhccCCcCC---h----hhhHHhhHHHHHHHHHHHhccHHhhhhhhhccC
Confidence            22             222222211111   0    011234567889999999999999999998876

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.96  E-value=1.4e-28  Score=260.42  Aligned_cols=239  Identities=20%  Similarity=0.314  Sum_probs=190.9

Q ss_pred             hhhcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCC---Ccc
Q 007711          301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE---PFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~---~~~  375 (592)
                      +|.+.||.|.||.||+++ .++++..|+|+.......      .++...|.++++.. .|||++.++|++...+   +..
T Consensus        22 ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~------deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~Dq   95 (953)
T KOG0587|consen   22 EIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDE------EEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQ   95 (953)
T ss_pred             EEEEEEeeccceeEEEEeeeecCceeeeEeecCCccc------cHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCe
Confidence            356889999999999999 567889999988765544      35667788888877 6999999999987543   236


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .+||||||.+||..|+++...+..+.|.....|+++++.|+.+||...  ++|||+|-.|||+++++.+|+.|||.+..+
T Consensus        96 LWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nk--viHRDikG~NiLLT~e~~VKLvDFGvSaQl  173 (953)
T KOG0587|consen   96 LWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNK--VIHRDIKGQNVLLTENAEVKLVDFGVSAQL  173 (953)
T ss_pred             EEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcc--eeeecccCceEEEeccCcEEEeeeeeeeee
Confidence            899999999999999998767888999999999999999999999998  999999999999999999999999999877


Q ss_pred             hhhhh---hhcccccCCCCC-----------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCcccc
Q 007711          456 AMAEM---AATSKKLSSAPS-----------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  521 (592)
Q Consensus       456 ~~~~~---~~~~~~~~~~~~-----------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (592)
                      +....   ......+|++|+           |+..+|+||+|++..||.-|.+|+.  +..+.          ..+..+.
T Consensus       174 dsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~--DmHPm----------raLF~Ip  241 (953)
T KOG0587|consen  174 DSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLC--DMHPM----------RALFLIP  241 (953)
T ss_pred             ecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCcc--Ccchh----------hhhccCC
Confidence            54321   122335666665           5678999999999999999999983  22111          1111111


Q ss_pred             -CC-CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 -DP-TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 -~~-~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       .| .....+..+.+++-+++..|+..|-++||++.++++
T Consensus       242 RNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  242 RNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             CCCCccccchhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence             11 112346778899999999999999999999988764

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.96  E-value=5.3e-29  Score=245.57  Aligned_cols=235  Identities=22%  Similarity=0.267  Sum_probs=183.2

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      ++||+|+||.||-++.+ .|+-+|.|.+.++..+.  ...+.....|-.++.+++.+.||.+--.+...+  ..++|+..
T Consensus       191 RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKk--r~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd--~LClVLtl  266 (591)
T KOG0986|consen  191 RVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKK--RKGETMALNEKQILEKVSSPFIVSLAYAFETKD--ALCLVLTL  266 (591)
T ss_pred             EEEecccccceeEEEEecchhhHHHHHHHHHHHHH--hhhhHHhhHHHHHHHHhccCcEEEEeeeecCCC--ceEEEEEe
Confidence            78999999999999854 68888888876655443  234556778999999999999998866666666  68999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh--
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM--  460 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~--  460 (592)
                      |.+|+|.-+|.......++..+.+-+|.+|+-||++||...  ||.|||||+|||+|+.|+++|+|.|+|..+..+..  
T Consensus       267 MNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~--iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~~~  344 (591)
T KOG0986|consen  267 MNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRR--IVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKPIR  344 (591)
T ss_pred             ecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcc--eeeccCChhheeeccCCCeEeeccceEEecCCCCccc
Confidence            99999998887656678999999999999999999999998  99999999999999999999999999998764432  


Q ss_pred             hhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCC--hHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          461 AATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGS--LEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       461 ~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                      ....+..+++|+      |+...|.||+||+||||+.|+.||......  -++.-+..+...           ..+++.-
T Consensus       345 ~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~~-----------~ey~~kF  413 (591)
T KOG0986|consen  345 GRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLEDP-----------EEYSDKF  413 (591)
T ss_pred             cccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcch-----------hhccccc
Confidence            113334555555      788899999999999999999999422211  111111111111           1234445


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMR  555 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~  555 (592)
                      ++++.++...-++.||++|...+
T Consensus       414 S~eakslc~~LL~Kdp~~RLGcr  436 (591)
T KOG0986|consen  414 SEEAKSLCEGLLTKDPEKRLGCR  436 (591)
T ss_pred             CHHHHHHHHHHHccCHHHhccCC
Confidence            56788999999999999998554

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.95  E-value=4.3e-28  Score=263.82  Aligned_cols=242  Identities=17%  Similarity=0.223  Sum_probs=146.8

Q ss_pred             hhcccCcCCCeEEEEEEeC-C----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEE------Eec
Q 007711          302 FSNVIGSSPIGTVYKGTLS-N----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGF------CEE  370 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~------~~~  370 (592)
                      +.+.||+|+||.||+|++. +    +..||+|.+.....       .+.+..|  .+....+.+++.++..      +..
T Consensus       136 l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~-------~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~~  206 (566)
T PLN03225        136 LGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA-------VEIWMNE--RVRRACPNSCADFVYGFLEPVSSKK  206 (566)
T ss_pred             EeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch-------hHHHHHH--HHHhhchhhHHHHHHhhhccccccc
Confidence            4588999999999999975 4    68899997643211       1111111  1122222222222211      122


Q ss_pred             CCCcceEEEEeeCCCCCchhhccccCCC------------------CCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcC
Q 007711          371 EEPFTRMMVFEYAPNGTLFEHIHIKESE------------------HLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN  432 (592)
Q Consensus       371 ~~~~~~~lv~Ey~~~gsL~~~l~~~~~~------------------~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk  432 (592)
                      ..  ..++|+||+++++|.+++......                  .........|+.|++.||+|||+.+  |+|||||
T Consensus       207 ~~--~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~g--IiHRDLK  282 (566)
T PLN03225        207 ED--EYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTG--IVHRDVK  282 (566)
T ss_pred             CC--ceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCC--EEeCcCC
Confidence            23  579999999999999988643210                  0112334578999999999999988  9999999


Q ss_pred             CCCeEEcC-CCceEEecCCcchhhhhhhhh----hcccccCCCCC----------------------------CCCCCcc
Q 007711          433 SSAVHLTE-DYAAKLSDLSFWNEIAMAEMA----ATSKKLSSAPS----------------------------ASLESNV  479 (592)
Q Consensus       433 ~~NiLl~~-~~~~ki~DfGla~~~~~~~~~----~~~~~~~~~~~----------------------------~s~ksDV  479 (592)
                      |+|||+++ ++.+||+|||+++........    ......+++||                            ++.++||
T Consensus       283 P~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DV  362 (566)
T PLN03225        283 PQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDI  362 (566)
T ss_pred             HHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCccc
Confidence            99999996 589999999999754321100    00011222222                            3456799


Q ss_pred             hhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC---ccccCCCCC-------CCCHHHHHHHHHHHHHhcccCCC
Q 007711          480 YNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL---QQFVDPTLS-------SFDEEQLETLGELIKSCVRADPE  549 (592)
Q Consensus       480 wSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~l~~l~~~Cl~~dP~  549 (592)
                      |||||+||||+++..|++..   ...+...........   .....+...       ...+.......+|+.+|++.||+
T Consensus       363 wSlGviL~el~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~  439 (566)
T PLN03225        363 YSAGLIFLQMAFPNLRSDSN---LIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGR  439 (566)
T ss_pred             HHHHHHHHHHHhCcCCCchH---HHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcc
Confidence            99999999999987765321   111111111000000   000111000       00001123456899999999999


Q ss_pred             CCCCHHHHHH
Q 007711          550 KRPTMRDIAA  559 (592)
Q Consensus       550 ~RPs~~ev~~  559 (592)
                      +|||+.|+++
T Consensus       440 kR~ta~e~L~  449 (566)
T PLN03225        440 QRISAKAALA  449 (566)
T ss_pred             cCCCHHHHhC
Confidence            9999999986

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1e-28  Score=233.88  Aligned_cols=231  Identities=20%  Similarity=0.244  Sum_probs=173.4

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +|.++||+|.||.|-.++- ..|+.+|+|++++.....  ......-..|-++|...+||.+..|--.+...+  ..|.|
T Consensus       171 dfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviia--kdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~d--rlCFV  246 (516)
T KOG0690|consen  171 DFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIA--KDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQD--RLCFV  246 (516)
T ss_pred             hHHHHhcCCccceEEEEeecccCceeehhhhhhhheee--hHHhhhhhhHHHHHHhccCcHHHHhhhhhccCc--eEEEE
Confidence            3568899999999999984 468999999987654332  222344567888999999999988866666555  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      |||..+|.|+-+|.  ....++..+..-+-..|..||.|||+.+  ||.||||.+|.|+|.||++||+|||+++.--.. 
T Consensus       247 MeyanGGeLf~HLs--rer~FsE~RtRFYGaEIvsAL~YLHs~~--ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g  322 (516)
T KOG0690|consen  247 MEYANGGELFFHLS--RERVFSEDRTRFYGAEIVSALGYLHSRN--IVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYG  322 (516)
T ss_pred             EEEccCceEeeehh--hhhcccchhhhhhhHHHHHHhhhhhhCC--eeeeechhhhheeccCCceEeeecccchhccccc
Confidence            99999999987775  4566787777778889999999999998  999999999999999999999999999864211 


Q ss_pred             --------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          459 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       459 --------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                              ...+.+|+....-.|..+.|.|..|||+|||++|+.||...+.  ...+.-++.+.-           .++.
T Consensus       323 ~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh--~kLFeLIl~ed~-----------kFPr  389 (516)
T KOG0690|consen  323 DTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDH--EKLFELILMEDL-----------KFPR  389 (516)
T ss_pred             ceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccch--hHHHHHHHhhhc-----------cCCc
Confidence                    1111222333333478899999999999999999999964331  222222222211           2333


Q ss_pred             HHHHHHHHHHHHhcccCCCCCC
Q 007711          531 EQLETLGELIKSCVRADPEKRP  552 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RP  552 (592)
                      ....+...++...+.+||.+|.
T Consensus       390 ~ls~eAktLLsGLL~kdP~kRL  411 (516)
T KOG0690|consen  390 TLSPEAKTLLSGLLKKDPKKRL  411 (516)
T ss_pred             cCCHHHHHHHHHHhhcChHhhc
Confidence            3445688899999999999996

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.95  E-value=1.1e-27  Score=254.27  Aligned_cols=246  Identities=15%  Similarity=0.209  Sum_probs=163.1

Q ss_pred             hhcccCcCCCeEEEEEEe-----------------CCCcEEEEEEeeecccCCCc---------hhHHHHHHHHHHHHhc
Q 007711          302 FSNVIGSSPIGTVYKGTL-----------------SNGVEIAVASVSVASAKDWP---------KNLEVQFRKKIDTLSK  355 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-----------------~~~~~vavk~~~~~~~~~~~---------~~~~~~f~~e~~~l~~  355 (592)
                      +.++||+|+||.||+|.+                 ..++.||||.+.........         ....+.+..|+.++.+
T Consensus       149 i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~~~l~~  228 (507)
T PLN03224        149 LRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEAYMCAK  228 (507)
T ss_pred             EeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHHHHHHH
Confidence            458899999999999964                 23567999987643221100         0012234457777788


Q ss_pred             CCCCce-----eeeeEEEecCC------CcceEEEEeeCCCCCchhhccccC----------------------CCCCCH
Q 007711          356 VNHKNF-----VNLIGFCEEEE------PFTRMMVFEYAPNGTLFEHIHIKE----------------------SEHLDW  402 (592)
Q Consensus       356 l~H~ni-----v~l~g~~~~~~------~~~~~lv~Ey~~~gsL~~~l~~~~----------------------~~~l~~  402 (592)
                      ++|.++     ++++|+|....      ....+|||||+++|+|.++++...                      ...++|
T Consensus       229 l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~  308 (507)
T PLN03224        229 IKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDI  308 (507)
T ss_pred             hhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCH
Confidence            876654     67888876421      114689999999999999886421                      123567


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh----------hhhcccccCCCCC
Q 007711          403 GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE----------MAATSKKLSSAPS  472 (592)
Q Consensus       403 ~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~----------~~~~~~~~~~~~~  472 (592)
                      ..+..++.+++.|++|||+.+  |+||||||+|||++.++.+||+|||+++......          ..+.++|....+.
T Consensus       309 ~~~~~i~~ql~~aL~~lH~~~--ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~  386 (507)
T PLN03224        309 NVIKGVMRQVLTGLRKLHRIG--IVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQ  386 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHCC--eecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhcCCC
Confidence            888999999999999999998  9999999999999999999999999987543211          1122222211110


Q ss_pred             ----------------------CCCCCcchhhHHHHHHHHhCCC-cccCCC----------CChHHHHHHHhcCCCCCcc
Q 007711          473 ----------------------ASLESNVYNFGVLLFEMVTGRL-PYLVDN----------GSLEDWAADYLSGVQPLQQ  519 (592)
Q Consensus       473 ----------------------~s~ksDVwSfGvvl~El~tG~~-P~~~~~----------~~~~~~~~~~~~~~~~~~~  519 (592)
                                            ...+.||||+||+++||++|.. ||....          .+...|.. +...  .   
T Consensus       387 ~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~-~~~~--~---  460 (507)
T PLN03224        387 SCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRM-YKGQ--K---  460 (507)
T ss_pred             CCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHh-hccc--C---
Confidence                                  1124699999999999999875 663211          01111110 0000  0   


Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhcccCC---CCCCCHHHHHH
Q 007711          520 FVDPTLSSFDEEQLETLGELIKSCVRADP---EKRPTMRDIAA  559 (592)
Q Consensus       520 ~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP---~~RPs~~ev~~  559 (592)
                       .+  . ...+.......+++.+++..+|   .+|+|++|+++
T Consensus       461 -~~--~-~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~  499 (507)
T PLN03224        461 -YD--F-SLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALS  499 (507)
T ss_pred             -CC--c-ccccccChHHHHHHHHHhccCCCCcccCCCHHHHhC
Confidence             00  0 1122234578899999999766   68999999874

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.95  E-value=2.3e-28  Score=244.46  Aligned_cols=235  Identities=23%  Similarity=0.339  Sum_probs=182.3

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      +.||+|.||+||-|+. ++|+.||||++.+..   ++...+.+.+.|+.+|.+++||.||.|.-.|...+  ..++|||-
T Consensus       570 evLGSGQFG~VYgg~hRktGrdVAvKvIdKlr---Fp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~e--rvFVVMEK  644 (888)
T KOG4236|consen  570 EVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLR---FPTKQESQLRNEVAILQNLHHPGIVNLECMFETPE--RVFVVMEK  644 (888)
T ss_pred             hhccCCcceeeecceecccCceeeeeeeeccc---CCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCc--eEEEEehh
Confidence            7899999999999995 579999999987654   33455678999999999999999999999998877  78999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC---CceEEecCCcchhhhhhh
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED---YAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~---~~~ki~DfGla~~~~~~~  459 (592)
                      + +|+..+.+-..+..+++.....-+..||..||.|||.++  |||+||||+|||+.+.   -.+||+|||+||.+....
T Consensus       645 l-~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~kn--IvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks  721 (888)
T KOG4236|consen  645 L-HGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKN--IVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS  721 (888)
T ss_pred             h-cchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcc--eeeccCCchheeeccCCCCCceeeccccceeecchhh
Confidence            9 567666666667788888888888999999999999999  9999999999999754   379999999999886543


Q ss_pred             h--------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 M--------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 ~--------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                      .        ++.+++......|...-|+||.|||+|--++|..||. ++.++.+.++.       ..-+..+.   -..+
T Consensus       722 FRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFN-EdEdIndQIQN-------AaFMyPp~---PW~e  790 (888)
T KOG4236|consen  722 FRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFN-EDEDINDQIQN-------AAFMYPPN---PWSE  790 (888)
T ss_pred             hhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCC-CccchhHHhhc-------cccccCCC---chhh
Confidence            2        2333444444457888899999999999999999994 34444443321       11111211   1234


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDI  557 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev  557 (592)
                      ......+++..-++..-.+|-+....
T Consensus       791 is~~AidlIn~LLqVkm~kRysvdk~  816 (888)
T KOG4236|consen  791 ISPEAIDLINNLLQVKMRKRYSVDKS  816 (888)
T ss_pred             cCHHHHHHHHHHHHHHHHHhcchHhh
Confidence            44567788888888888888777644

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.95  E-value=2.4e-28  Score=237.03  Aligned_cols=254  Identities=17%  Similarity=0.235  Sum_probs=186.6

Q ss_pred             HHHHHHhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-C-C----ceeeeeE
Q 007711          294 ELEAACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-H-K----NFVNLIG  366 (592)
Q Consensus       294 el~~~~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H-~----niv~l~g  366 (592)
                      ++...++.+...+|+|.||.|-++... .+..||||+++.-.      ...+.-+-|++++.++. + |    -+|.+.+
T Consensus        85 D~l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~------kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~  158 (415)
T KOG0671|consen   85 DILTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVD------KYREAALIEIEVLQKINESDPNGKFRCVQMRD  158 (415)
T ss_pred             cccccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHH------HHhhHHHHHHHHHHHHHhcCCCCceEEEeeeh
Confidence            444445556678999999999999743 46889999875432      23455667899999983 2 2    2777888


Q ss_pred             EEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC------
Q 007711          367 FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE------  440 (592)
Q Consensus       367 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~------  440 (592)
                      ++...+  ..|||+|.+ +-|+++++..+....++......|+.|++++++|||+.+  ++|-||||+|||+-+      
T Consensus       159 wFdyrg--hiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~k--l~HTDLKPENILfvss~~~~~  233 (415)
T KOG0671|consen  159 WFDYRG--HICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLK--LTHTDLKPENILFVSSEYFKT  233 (415)
T ss_pred             hhhccC--ceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcc--eeecCCChheEEEeccceEEE
Confidence            887777  679999998 569999999888888999999999999999999999999  999999999999842      


Q ss_pred             --------------CCceEEecCCcchhhhhhhhhhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCC
Q 007711          441 --------------DYAAKLSDLSFWNEIAMAEMAATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDN  500 (592)
Q Consensus       441 --------------~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~  500 (592)
                                    +..+||.|||.|+..........++.-|++||      .+..+||||+||||.|++||..-|...+
T Consensus       234 ~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHe  313 (415)
T KOG0671|consen  234 YNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHE  313 (415)
T ss_pred             eccCCccceeccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCC
Confidence                          34589999999988765554444555566666      5899999999999999999999886433


Q ss_pred             CChHH--HHHHHhcC--------C--------CCC-----------ccccCCCC-----CCCCHHHHHHHHHHHHHhccc
Q 007711          501 GSLED--WAADYLSG--------V--------QPL-----------QQFVDPTL-----SSFDEEQLETLGELIKSCVRA  546 (592)
Q Consensus       501 ~~~~~--~~~~~~~~--------~--------~~~-----------~~~~~~~~-----~~~~~~~~~~l~~l~~~Cl~~  546 (592)
                       +.+.  ..+.++..        .        ..+           ..+.++..     ....+.+..++++|+.+++..
T Consensus       314 -n~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~f  392 (415)
T KOG0671|consen  314 -NLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEF  392 (415)
T ss_pred             -cHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHcc
Confidence             1111  11111110        0        000           00111110     011234556799999999999


Q ss_pred             CCCCCCCHHHHHH
Q 007711          547 DPEKRPTMRDIAA  559 (592)
Q Consensus       547 dP~~RPs~~ev~~  559 (592)
                      ||.+|+|+.|++.
T Consensus       393 DP~~RiTl~EAL~  405 (415)
T KOG0671|consen  393 DPARRITLREALS  405 (415)
T ss_pred             CccccccHHHHhc
Confidence            9999999999874

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=4.7e-29  Score=228.65  Aligned_cols=246  Identities=19%  Similarity=0.297  Sum_probs=175.2

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC------Ccce
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE------PFTR  376 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------~~~~  376 (592)
                      .+||+|.||+||+++.+ .|+.||+|++.....+.   ..-..-.+|++++..+.|+|++.++..|....      ....
T Consensus        23 ~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKe---GfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~   99 (376)
T KOG0669|consen   23 AKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKE---GFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRATF   99 (376)
T ss_pred             HhcCCchHHHHHHHhhcCccchhHHHHHHHhcccc---CCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccccccee
Confidence            57999999999999954 57788888765543332   12344678999999999999999998886432      1136


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|+++|+. +|..++. +....++.....+++.++..||.|+|...  |+|||+||.|+||+.++..||+|||++|.+.
T Consensus       100 ylVf~~ceh-DLaGlLs-n~~vr~sls~Ikk~Mk~Lm~GL~~iHr~k--ilHRDmKaaNvLIt~dgilklADFGlar~fs  175 (376)
T KOG0669|consen  100 YLVFDFCEH-DLAGLLS-NRKVRFSLSEIKKVMKGLMNGLYYIHRNK--ILHRDMKAANVLITKDGILKLADFGLARAFS  175 (376)
T ss_pred             eeeHHHhhh-hHHHHhc-CccccccHHHHHHHHHHHHHHHHHHHHhh--HHhhcccHhhEEEcCCceEEeecccccccee
Confidence            899999987 8888875 44567899999999999999999999998  9999999999999999999999999998875


Q ss_pred             hhhhhh----cc---cccCC-------CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHH-HHHhcCCCCCcccc
Q 007711          457 MAEMAA----TS---KKLSS-------APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA-ADYLSGVQPLQQFV  521 (592)
Q Consensus       457 ~~~~~~----~~---~~~~~-------~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~-~~~~~~~~~~~~~~  521 (592)
                      ......    +.   +.++.       ..+++.+.|||.-|||+.||+||.+-+... .+..... -..+.+  .+..-+
T Consensus       176 ~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgn-teqqql~~Is~LcG--s~tkev  252 (376)
T KOG0669|consen  176 TSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGN-TEQQQLHLISQLCG--SITKEV  252 (376)
T ss_pred             cccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCC-hHHHHHHHHHHHhc--cCCccc
Confidence            433211    11   12233       334899999999999999999987766322 2111110 001111  000000


Q ss_pred             CCCC-----------CCCCH-------HH------HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 DPTL-----------SSFDE-------EQ------LETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ~~~~-----------~~~~~-------~~------~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      -|..           .+.++       +.      ..+..+++...+..||.+|+.+.+++.
T Consensus       253 WP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~aln  314 (376)
T KOG0669|consen  253 WPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALN  314 (376)
T ss_pred             CCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhc
Confidence            0100           00000       01      136789999999999999999998764

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=6.9e-28  Score=260.82  Aligned_cols=252  Identities=20%  Similarity=0.277  Sum_probs=187.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.++||+|+||.|...+.+ .++.+|.|++.+...-.  .....-|++|-++|..-+.+-|+.++-.+.+..  +.|+||
T Consensus        79 ilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlK--r~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~--~LYlVM  154 (1317)
T KOG0612|consen   79 ILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLK--RAETACFREERDIMVFGNSEWIVQLHYAFQDER--YLYLVM  154 (1317)
T ss_pred             HHHHhcccccceeEEEEeeccccchhHHHhhHHHHhh--chhHHHHHHHhHHHHcCCcHHHHHHHHHhcCcc--ceEEEE
Confidence            3588999999999999964 57788988886532111  112456999999999999999999988887777  789999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      |||+||+|..++..-.  .++..+..-++..|.-||.-||+.+  +|||||||.|||||..|++|++|||.+-.+.... 
T Consensus       155 dY~pGGDlltLlSk~~--~~pE~~ArFY~aEiVlAldslH~mg--yVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~  230 (1317)
T KOG0612|consen  155 DYMPGGDLLTLLSKFD--RLPEDWARFYTAEIVLALDSLHSMG--YVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGT  230 (1317)
T ss_pred             ecccCchHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHHhcc--ceeccCCcceeEecccCcEeeccchhHHhcCCCCc
Confidence            9999999999986332  6888888888999999999999999  9999999999999999999999999876664221 


Q ss_pred             ----hhhcccccC----------CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          460 ----MAATSKKLS----------SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       460 ----~~~~~~~~~----------~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                          .+..+|-|.          ...+|+..+|+||+||++|||+.|..||..  .++.+-...++.....+        
T Consensus       231 V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYa--dslveTY~KIm~hk~~l--------  300 (1317)
T KOG0612|consen  231 VRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYA--DSLVETYGKIMNHKESL--------  300 (1317)
T ss_pred             EEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchH--HHHHHHHHHHhchhhhc--------
Confidence                111122111          125689999999999999999999999953  23344334444332221        


Q ss_pred             CCCC--HHHHHHHHHHHHHhcccCCCCCCC---HHHHHHHHHhhhCCCCCCCCCccCcccHHHHHh
Q 007711          526 SSFD--EEQLETLGELIKSCVRADPEKRPT---MRDIAAILREITGITPDGAIPKLSPLWWAEIEI  586 (592)
Q Consensus       526 ~~~~--~~~~~~l~~l~~~Cl~~dP~~RPs---~~ev~~~L~~i~~~~~~~~~p~~~~~~~~~~~~  586 (592)
                       .||  ...++++.+||.+-+ -+|+.|..   .+++.             ..|.+....|+.+..
T Consensus       301 -~FP~~~~VSeeakdLI~~ll-~~~e~RLgrngiedik-------------~HpFF~g~~W~~iR~  351 (1317)
T KOG0612|consen  301 -SFPDETDVSEEAKDLIEALL-CDREVRLGRNGIEDIK-------------NHPFFEGIDWDNIRE  351 (1317)
T ss_pred             -CCCcccccCHHHHHHHHHHh-cChhhhcccccHHHHH-------------hCccccCCChhhhhh
Confidence             122  224567888888766 56888887   66664             356666666655544

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.95  E-value=1.2e-27  Score=213.40  Aligned_cols=187  Identities=20%  Similarity=0.259  Sum_probs=146.9

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc-CCCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK-VNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~-l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      ..||+|+||.|-+-++ .+|...|||.+.....    .+..++...|+++..+ ...|.+|.++|...+..  ..++.||
T Consensus        52 ~elGrGayG~vekmrh~~sg~imAvKri~~tvn----~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~reg--dvwIcME  125 (282)
T KOG0984|consen   52 EELGRGAYGVVEKMRHIQSGTIMAVKRIRATVN----SQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREG--DVWICME  125 (282)
T ss_pred             hhhcCCccchhhheeeccCCeEEEEeeehhhcC----hHHHHHHHHhhhhhccCCCCCeEEEeehhhhccc--cEEEeHH
Confidence            4599999999988774 5799999999875442    3456677788887554 57999999999887766  6799999


Q ss_pred             eCCCCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          382 YAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       382 y~~~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      .|.. ||..+-+.  ..+..++....-+||..|..||.|||++- .++|||+||+|||++.+|++|++|||.+..+..+-
T Consensus       126 ~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL-~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSi  203 (282)
T KOG0984|consen  126 LMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKL-SVIHRDVKPSNILINYDGQVKICDFGISGYLVDSI  203 (282)
T ss_pred             Hhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHh-hhhhccCCcceEEEccCCcEEEcccccceeehhhh
Confidence            9954 77655432  35567888888999999999999999862 39999999999999999999999999987664321


Q ss_pred             h-h-hcccccCCCC----------CCCCCCcchhhHHHHHHHHhCCCcccC
Q 007711          460 M-A-ATSKKLSSAP----------SASLESNVYNFGVLLFEMVTGRLPYLV  498 (592)
Q Consensus       460 ~-~-~~~~~~~~~~----------~~s~ksDVwSfGvvl~El~tG~~P~~~  498 (592)
                      . . .+...-+++|          .|+-||||||+|+++.||.+++.||+.
T Consensus       204 Akt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~  254 (282)
T KOG0984|consen  204 AKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYES  254 (282)
T ss_pred             HHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccc
Confidence            1 1 1111223333          378899999999999999999999953

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.94  E-value=1.5e-27  Score=251.46  Aligned_cols=230  Identities=20%  Similarity=0.325  Sum_probs=167.2

Q ss_pred             cccCcCCCe-EEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIG-TVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g-~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.+|.|+.| .||+|.+ +|++||||.+....        ..-..+||..++.- +|||||++++.-.++.  ..||..|
T Consensus       515 eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e~--------~~~A~rEi~lL~eSD~H~NviRyyc~E~d~q--F~YIalE  583 (903)
T KOG1027|consen  515 EILGYGSNGTVVFRGVY-EGREVAVKRLLEEF--------FDFAQREIQLLQESDEHPNVIRYYCSEQDRQ--FLYIALE  583 (903)
T ss_pred             HHcccCCCCcEEEEEee-CCceehHHHHhhHh--------HHHHHHHHHHHHhccCCCceEEEEeeccCCc--eEEEEeh
Confidence            678999987 5899999 67899999875332        22346899999888 5999999976555544  7899999


Q ss_pred             eCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC---C--CceEEecCCcchh
Q 007711          382 YAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---D--YAAKLSDLSFWNE  454 (592)
Q Consensus       382 y~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~---~--~~~ki~DfGla~~  454 (592)
                      .|. .+|.+++...  ......-.....+..|++.|+++||+++  ||||||||.||||+.   +  .+++|+|||+++.
T Consensus       584 LC~-~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~--iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKk  660 (903)
T KOG1027|consen  584 LCA-CSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLK--IVHRDLKPQNILISVPSADGTLRAKISDFGLSKK  660 (903)
T ss_pred             Hhh-hhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcc--cccccCCCceEEEEccCCCcceeEEecccccccc
Confidence            995 5999998752  1111111334567889999999999999  999999999999985   2  5799999999998


Q ss_pred             hhhhhhh------hcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCcccc
Q 007711          455 IAMAEMA------ATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFV  521 (592)
Q Consensus       455 ~~~~~~~------~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (592)
                      +......      ......|.+||      -+.++||+|+|||+|+.+| |+.||.    +..+....++.+...+..+.
T Consensus       661 l~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFG----d~~~R~~NIl~~~~~L~~L~  736 (903)
T KOG1027|consen  661 LAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFG----DSLERQANILTGNYTLVHLE  736 (903)
T ss_pred             cCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCC----chHHhhhhhhcCccceeeec
Confidence            7643321      12235667776      3567899999999999999 699993    22222222333333222211


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      +      .+++  +..+|+.+++..||..||++.+|+.
T Consensus       737 ~------~~d~--eA~dLI~~ml~~dP~~RPsa~~VL~  766 (903)
T KOG1027|consen  737 P------LPDC--EAKDLISRMLNPDPQLRPSATDVLN  766 (903)
T ss_pred             c------CchH--HHHHHHHHhcCCCcccCCCHHHHhC
Confidence            1      1122  7889999999999999999999863

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=3.2e-27  Score=213.79  Aligned_cols=242  Identities=15%  Similarity=0.256  Sum_probs=176.1

Q ss_pred             hhcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.+++|+|.|++||.|. ..+...++||+++...        .+.+.+|+++|..++ ||||++|++...+.......||
T Consensus        42 ivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk--------kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLi  113 (338)
T KOG0668|consen   42 IVRKVGRGKYSEVFEGINITNNEKCVIKILKPVK--------KKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLI  113 (338)
T ss_pred             HHHHHcCccHhhHhcccccCCCceEEEeeechHH--------HHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhH
Confidence            34679999999999998 5677888999887543        346889999999997 9999999999988765566899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC-CceEEecCCcchhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~-~~~ki~DfGla~~~~~~  458 (592)
                      +||+.+-+...+-     ..++-........++.+||.|+|+.+  |.|||+||.|++||.. -..++.|+|+|.++..+
T Consensus       114 FE~v~n~Dfk~ly-----~tl~d~dIryY~~elLkALdyCHS~G--ImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~  186 (338)
T KOG0668|consen  114 FEYVNNTDFKQLY-----PTLTDYDIRYYIYELLKALDYCHSMG--IMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG  186 (338)
T ss_pred             hhhhccccHHHHh-----hhhchhhHHHHHHHHHHHHhHHHhcC--cccccCCcceeeechhhceeeeeecchHhhcCCC
Confidence            9999987665433     34555667778899999999999999  9999999999999954 57899999999887654


Q ss_pred             hhhh--cccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHH--HhcCC------CCCcccc
Q 007711          459 EMAA--TSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAAD--YLSGV------QPLQQFV  521 (592)
Q Consensus       459 ~~~~--~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~--~~~~~------~~~~~~~  521 (592)
                      ....  .+..++.+|+       +...-|+|||||++.+|+..+.||........+.++.  .+...      .+..-..
T Consensus       187 ~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~L  266 (338)
T KOG0668|consen  187 KEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDL  266 (338)
T ss_pred             ceeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCC
Confidence            3321  2234445554       6777899999999999999999996444333332210  11000      0000011


Q ss_pred             CCCCCC------------C----CH-HHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 007711          522 DPTLSS------------F----DE-EQLETLGELIKSCVRADPEKRPTMRDIA  558 (592)
Q Consensus       522 ~~~~~~------------~----~~-~~~~~l~~l~~~Cl~~dP~~RPs~~ev~  558 (592)
                      ||...+            +    .. -...++.+++...+..|-++|+|++|.+
T Consensus       267 dp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam  320 (338)
T KOG0668|consen  267 DPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAM  320 (338)
T ss_pred             ChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHh
Confidence            111100            0    00 1125688999999999999999999875

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.94  E-value=1.4e-25  Score=213.62  Aligned_cols=202  Identities=28%  Similarity=0.448  Sum_probs=167.3

Q ss_pred             cCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeCC
Q 007711          306 IGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  384 (592)
Q Consensus       306 lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~~  384 (592)
                      ||+|.+|.||++...+ +..+++|.+.......    ..+.+.+|++.++.++|++++++++++....  ..++++||++
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~----~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--~~~~~~e~~~   74 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS----LLEELLREIEILKKLNHPNIVKLYGVFEDEN--HLYLVMEYCE   74 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh----HHHHHHHHHHHHHhcCCCCeeeEeeeeecCC--eEEEEEecCC
Confidence            6899999999999754 8899999886543221    3467999999999999999999999998765  6799999999


Q ss_pred             CCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC-CCceEEecCCcchhhhhhh---h
Q 007711          385 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWNEIAMAE---M  460 (592)
Q Consensus       385 ~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~-~~~~ki~DfGla~~~~~~~---~  460 (592)
                      +++|.+++.... ..+++..+..++.+++++++|||+.+  ++|+||+|.||+++. +..++|+|||.+.......   .
T Consensus        75 ~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~~--~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~  151 (215)
T cd00180          75 GGSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHSNG--IIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLK  151 (215)
T ss_pred             CCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhh
Confidence            999999986432 46889999999999999999999998  999999999999999 8999999999987664331   1


Q ss_pred             ------hhcccccCCCC-CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          461 ------AATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       461 ------~~~~~~~~~~~-~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                            .+.+++..... ..+.++|+|++|++++|+                                            
T Consensus       152 ~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l--------------------------------------------  187 (215)
T cd00180         152 TIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL--------------------------------------------  187 (215)
T ss_pred             cccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH--------------------------------------------
Confidence                  11122222222 567889999999999999                                            


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      ..+.+++.+|++.+|++||++.++++.
T Consensus       188 ~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         188 PELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence            357889999999999999999998864

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.6e-27  Score=220.74  Aligned_cols=248  Identities=24%  Similarity=0.436  Sum_probs=183.9

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ++..+|.+...|+.|+|+|. |..+++|++.+..   .+....++|.+|.-.++.+.||||..++|.|....  ...++.
T Consensus       193 nl~tkl~e~hsgelwrgrwq-gndivakil~vr~---~t~risrdfneefp~lrifshpnilpvlgacnspp--nlv~is  266 (448)
T KOG0195|consen  193 NLITKLAESHSGELWRGRWQ-GNDIVAKILNVRE---VTARISRDFNEEFPALRIFSHPNILPVLGACNSPP--NLVIIS  266 (448)
T ss_pred             hhhhhhccCCCccccccccc-Ccchhhhhhhhhh---cchhhcchhhhhCcceeeecCCchhhhhhhccCCC--CceEee
Confidence            34567899999999999995 4556667766543   34456688999999999999999999999998865  678999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEe--cCCcchh--hh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS--DLSFWNE--IA  456 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~--DfGla~~--~~  456 (592)
                      .||+.|+|+..+++.....++-.+..++|.+||+|++|||+..|-|..-.|.+..+++|++.+++|+  |--++..  -.
T Consensus       267 q~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltarismad~kfsfqe~gr  346 (448)
T KOG0195|consen  267 QYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQEVGR  346 (448)
T ss_pred             eeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhheecccceeeeecccc
Confidence            9999999999999887777888999999999999999999998766666799999999999999985  3222111  11


Q ss_pred             hhhhhhcccc-cCCCCCC--CCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          457 MAEMAATSKK-LSSAPSA--SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       457 ~~~~~~~~~~-~~~~~~~--s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                      .-..++.+++ ....|+.  -.++|+|||.|++||+.|+..||.  +-+..+.-.+..  .+.+...+.       +...
T Consensus       347 ~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfa--dlspmecgmkia--leglrv~ip-------pgis  415 (448)
T KOG0195|consen  347 AYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFA--DLSPMECGMKIA--LEGLRVHIP-------PGIS  415 (448)
T ss_pred             ccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccc--cCCchhhhhhhh--hccccccCC-------CCcc
Confidence            1111222222 2233332  346899999999999999999994  222222111111  112222233       3334


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      ..+.++|.-|..+||.+||.|..|+-.|+++.
T Consensus       416 ~hm~klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  416 RHMNKLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             HHHHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence            56889999999999999999999999999874

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.2e-26  Score=226.05  Aligned_cols=263  Identities=18%  Similarity=0.191  Sum_probs=185.8

Q ss_pred             HHHHHhhhhcccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCC
Q 007711          295 LEAACEDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE  372 (592)
Q Consensus       295 l~~~~~~~~~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~  372 (592)
                      +.....+|..+||+|+||.|..|.-++ ...+|||+++.......  ...+--+.|-++|.-- +-|.+++++.++..-+
T Consensus       346 i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQd--DDvectm~EKrvLAL~~kppFL~qlHScFQTmD  423 (683)
T KOG0696|consen  346 IKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQD--DDVECTMVEKRVLALPGKPPFLVQLHSCFQTMD  423 (683)
T ss_pred             eeecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeec--CcccceehhhhheecCCCCchHHHHHHHhhhhh
Confidence            344445677899999999999998643 56789998875443221  1111123344555544 5678888888887766


Q ss_pred             CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcc
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  452 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla  452 (592)
                        ..|.||||+.+|+|--+++.  -..+..+...-+|..||-||-|||+++  |+.||||..|||+|.++.+||+|||++
T Consensus       424 --RLyFVMEyvnGGDLMyhiQQ--~GkFKEp~AvFYAaEiaigLFFLh~kg--IiYRDLKLDNvmLd~eGHiKi~DFGmc  497 (683)
T KOG0696|consen  424 --RLYFVMEYVNGGDLMYHIQQ--VGKFKEPVAVFYAAEIAIGLFFLHSKG--IIYRDLKLDNVMLDSEGHIKIADFGMC  497 (683)
T ss_pred             --heeeEEEEecCchhhhHHHH--hcccCCchhhhhhHHHHHHhhhhhcCC--eeeeeccccceEeccCCceEeeecccc
Confidence              67999999999999777753  345667778889999999999999999  999999999999999999999999999


Q ss_pred             hhhhhhhh---hhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          453 NEIAMAEM---AATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       453 ~~~~~~~~---~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      +.--....   .-..+.-+.+|+      |+..+|+|||||+||||+.|+.||+++  +..+..+.+....-        
T Consensus       498 KEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGe--DE~elF~aI~ehnv--------  567 (683)
T KOG0696|consen  498 KENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE--DEDELFQAIMEHNV--------  567 (683)
T ss_pred             cccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCC--CHHHHHHHHHHccC--------
Confidence            86532221   111122344444      788999999999999999999999544  34455555443321        


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCCCCccCcccHHHHHh
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEI  586 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~~p~~~~~~~~~~~~  586 (592)
                         .++...+.+..++...-+...|.+|....--        ....-...|.+.-..|..+|.
T Consensus       568 ---syPKslSkEAv~ickg~ltK~P~kRLGcg~~--------ge~di~~H~FFR~iDWek~E~  619 (683)
T KOG0696|consen  568 ---SYPKSLSKEAVAICKGLLTKHPGKRLGCGPE--------GERDIREHPFFRRIDWEKLER  619 (683)
T ss_pred             ---cCcccccHHHHHHHHHHhhcCCccccCCCCc--------cccchhhCcchhhccHHHHhh
Confidence               2344455678888899999999999643210        001124456666777777764

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.8e-26  Score=213.83  Aligned_cols=187  Identities=16%  Similarity=0.216  Sum_probs=147.5

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC---cceEE
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRMM  378 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~---~~~~l  378 (592)
                      .+.||-|+||.||..+. ++|+.|+.|++......   -...+.+.+|++++..++|.|++..++...-...   .+.|+
T Consensus        58 DRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~---L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV  134 (449)
T KOG0664|consen   58 DRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQN---LASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYV  134 (449)
T ss_pred             CCcccccceeEEEeccCCCCccchhHhhcchHHHH---HHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHH
Confidence            36799999999999885 57899998876432211   2345678899999999999999998876643321   14688


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ++|.|. .+|...+-  ..+.++.....-+..||.+||.|||+.+  |.||||||.|.|++.+-..||+|||++|.....
T Consensus       135 ~TELmQ-SDLHKIIV--SPQ~Ls~DHvKVFlYQILRGLKYLHsA~--ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d  209 (449)
T KOG0664|consen  135 LTELMQ-SDLHKIIV--SPQALTPDHVKVFVYQILRGLKYLHTAN--ILHRDIKPGNLLVNSNCILKICDFGLARTWDQR  209 (449)
T ss_pred             HHHHHH-hhhhheec--cCCCCCcchhhhhHHHHHhhhHHHhhcc--hhhccCCCccEEeccCceEEecccccccccchh
Confidence            999995 48887774  4567888888889999999999999999  999999999999999999999999999976432


Q ss_pred             h----------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCccc
Q 007711          459 E----------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYL  497 (592)
Q Consensus       459 ~----------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~  497 (592)
                      .          .++.+++..+ +..|+.+.||||.||++.|++.++.-|.
T Consensus       210 ~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQ  259 (449)
T KOG0664|consen  210 DRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQ  259 (449)
T ss_pred             hhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhh
Confidence            2          2233333332 3348999999999999999999888774

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=2.5e-26  Score=229.31  Aligned_cols=231  Identities=18%  Similarity=0.204  Sum_probs=180.2

Q ss_pred             cccCcCCCeEEEEEEeCCCc-EEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTLSNGV-EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~-~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      ..||-|+||.|=....+... .+|+|++++...-+  ...++....|-.+|.+.+.|.||+++--+.+.+  ++|++||-
T Consensus       426 aTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVd--tkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~k--yvYmLmEa  501 (732)
T KOG0614|consen  426 ATLGVGGFGRVELVKVNSQKATFALKILKKKHIVD--TKQQEHVFSERNIMMECRSDFIVRLYRTFRDSK--YVYMLMEA  501 (732)
T ss_pred             hhcccCccceEEEEEecccchHHHHHHHhHhhccc--hhHHHHHHhHHHHHHhcCchHHHHHHHHhccch--hhhhhHHh
Confidence            46999999999998875433 37777776544333  234567888999999999999999998888777  78999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhhhh
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA  462 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~~~  462 (592)
                      |-+|.|...++.+  ..++.....-++..+.+|++|||.++  ||.|||||+|+++|.+|-+||.|||+|+.+..+...+
T Consensus       502 ClGGElWTiLrdR--g~Fdd~tarF~~acv~EAfeYLH~k~--iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KTw  577 (732)
T KOG0614|consen  502 CLGGELWTILRDR--GSFDDYTARFYVACVLEAFEYLHRKG--IIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKTW  577 (732)
T ss_pred             hcCchhhhhhhhc--CCcccchhhhhHHHHHHHHHHHHhcC--ceeccCChhheeeccCCceEEeehhhHHHhccCCcee
Confidence            9999999999743  45777777778999999999999999  9999999999999999999999999999998766544


Q ss_pred             cc--cccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 007711          463 TS--KKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  534 (592)
Q Consensus       463 ~~--~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (592)
                      +.  +.-|.+|+      -..++|.||+|+.++||+||++||..  .++......++++.+.+         .+|.....
T Consensus       578 TFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~--~dpmktYn~ILkGid~i---------~~Pr~I~k  646 (732)
T KOG0614|consen  578 TFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSG--VDPMKTYNLILKGIDKI---------EFPRRITK  646 (732)
T ss_pred             eecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCC--CchHHHHHHHHhhhhhh---------hcccccch
Confidence            42  22334555      35679999999999999999999943  33333344445543322         22333445


Q ss_pred             HHHHHHHHhcccCCCCCCC
Q 007711          535 TLGELIKSCVRADPEKRPT  553 (592)
Q Consensus       535 ~l~~l~~~Cl~~dP~~RPs  553 (592)
                      ...+++++....+|.+|..
T Consensus       647 ~a~~Lik~LCr~~P~ERLG  665 (732)
T KOG0614|consen  647 TATDLIKKLCRDNPTERLG  665 (732)
T ss_pred             hHHHHHHHHHhcCcHhhhc
Confidence            6778898888899999986

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.92  E-value=2.1e-24  Score=208.54  Aligned_cols=187  Identities=24%  Similarity=0.359  Sum_probs=154.0

Q ss_pred             hhcccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|++|.||++...+ +..+++|.+......    ...+.+.+|++.+.+++|+|++++++++....  ..++++
T Consensus         3 ~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~----~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~--~~~~v~   76 (225)
T smart00221        3 LGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE----KQREEFLREIRILKKLKHPNIVKLYGVFEDPE--PLYLVM   76 (225)
T ss_pred             eeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch----HHHHHHHHHHHHHHhCCCCChhhheeeeecCC--ceEEEE
Confidence            45779999999999999765 889999988654322    24568899999999999999999999988766  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++++|.+++..... .+++.....++.+++.++.|||+++  ++|+|++++||+++.++.++|+|||.+....... 
T Consensus        77 e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~  153 (225)
T smart00221       77 EYCEGGDLFDYLRKKGG-KLSEEEARFYLRQILEALEYLHSLG--IVHRDLKPENILLGMDGLVKLADFGLARFIHRDLA  153 (225)
T ss_pred             eccCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEeeCceeeEecCccc
Confidence            99999999999864321 2789999999999999999999998  9999999999999999999999999988764432 


Q ss_pred             ---h------hhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCccc
Q 007711          460 ---M------AATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYL  497 (592)
Q Consensus       460 ---~------~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~  497 (592)
                         .      .+.+++.. .....+.++|||+||++++||++|+.||.
T Consensus       154 ~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~  201 (225)
T smart00221      154 ALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFS  201 (225)
T ss_pred             ccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCcc
Confidence               1      11222222 33345679999999999999999999994

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=4.1e-25  Score=225.55  Aligned_cols=187  Identities=17%  Similarity=0.293  Sum_probs=145.5

Q ss_pred             cccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      +.||-|+||+|+.++ .+....+|.|.+.++..-.  .......+.|-++|.+.+.+-||+|+-.+.+.+  ..|+||||
T Consensus       635 k~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~--rnQvaHVKAERDILAEADn~WVVrLyySFQDkd--nLYFVMdY  710 (1034)
T KOG0608|consen  635 KTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLM--RNQVAHVKAERDILAEADNEWVVRLYYSFQDKD--NLYFVMDY  710 (1034)
T ss_pred             eeecccccceeEEEeecchhhHHHHhhhHHHHHHh--hhhhhhhhhhhhhHhhcCCcceEEEEEEeccCC--ceEEEEec
Confidence            679999999999998 4455667777775443221  234556788999999999999999998888777  78999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh--hh
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--EM  460 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~--~~  460 (592)
                      +++|++-.+|-.  ...|......-++.++..|+++.|..+  +|||||||.|||||.+|.+||+|||++.-+.=.  ..
T Consensus       711 IPGGDmMSLLIr--mgIFeE~LARFYIAEltcAiesVHkmG--FIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdsk  786 (1034)
T KOG0608|consen  711 IPGGDMMSLLIR--MGIFEEDLARFYIAELTCAIESVHKMG--FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSK  786 (1034)
T ss_pred             cCCccHHHHHHH--hccCHHHHHHHHHHHHHHHHHHHHhcc--ceecccCccceEEccCCceeeeeccccccceeccccc
Confidence            999999887742  345666666667779999999999999  999999999999999999999999998754200  00


Q ss_pred             hh-------------------------------------------cccccCCCCC------CCCCCcchhhHHHHHHHHh
Q 007711          461 AA-------------------------------------------TSKKLSSAPS------ASLESNVYNFGVLLFEMVT  491 (592)
Q Consensus       461 ~~-------------------------------------------~~~~~~~~~~------~s~ksDVwSfGvvl~El~t  491 (592)
                      ++                                           ..+..+.+||      ++.-+|+||.||||+||+.
T Consensus       787 YYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~  866 (1034)
T KOG0608|consen  787 YYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLV  866 (1034)
T ss_pred             cccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhh
Confidence            00                                           0011233444      5777999999999999999


Q ss_pred             CCCcccC
Q 007711          492 GRLPYLV  498 (592)
Q Consensus       492 G~~P~~~  498 (592)
                      |+.||..
T Consensus       867 g~~pf~~  873 (1034)
T KOG0608|consen  867 GQPPFLA  873 (1034)
T ss_pred             CCCCccC
Confidence            9999953

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.92  E-value=5.7e-25  Score=204.01  Aligned_cols=241  Identities=15%  Similarity=0.281  Sum_probs=166.6

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +++.+.+|+|.||.+-.++.+ ....+++|.+....      ...++|.+|...=-.+ .|.||+.-+.+..+... ...
T Consensus        26 y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~------tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d-~Yv   98 (378)
T KOG1345|consen   26 YTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ------TTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSD-AYV   98 (378)
T ss_pred             hhHHHHhcccceeeEEeeeccCCceEEEeeccCcch------hhHHHHHHHhccceeeccchhhhHHHHHHhhcCc-eEE
Confidence            445678999999999999975 46678888775432      2367899988765555 59999988766544332 357


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc--CCCceEEecCCcchhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT--EDYAAKLSDLSFWNEI  455 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~--~~~~~ki~DfGla~~~  455 (592)
                      +++||+|.|+|.+.+..   ..+......+++.|++.|+.|||+++  +||||||.+||||-  +..++|++|||..+..
T Consensus        99 F~qE~aP~gdL~snv~~---~GigE~~~K~v~~ql~SAi~fMHskn--lVHRdlK~eNiLif~~df~rvKlcDFG~t~k~  173 (378)
T KOG1345|consen   99 FVQEFAPRGDLRSNVEA---AGIGEANTKKVFAQLLSAIEFMHSKN--LVHRDLKAENILIFDADFYRVKLCDFGLTRKV  173 (378)
T ss_pred             EeeccCccchhhhhcCc---ccccHHHHHHHHHHHHHHHHHhhccc--hhhcccccceEEEecCCccEEEeeeccccccc
Confidence            89999999999887742   45677778899999999999999999  99999999999985  3458999999998876


Q ss_pred             hhhhhhhcccccCCCCC-----------CCCCCcchhhHHHHHHHHhCCCcccCC---CCChHHHHHHHhcCCCCCcccc
Q 007711          456 AMAEMAATSKKLSSAPS-----------ASLESNVYNFGVLLFEMVTGRLPYLVD---NGSLEDWAADYLSGVQPLQQFV  521 (592)
Q Consensus       456 ~~~~~~~~~~~~~~~~~-----------~s~ksDVwSfGvvl~El~tG~~P~~~~---~~~~~~~~~~~~~~~~~~~~~~  521 (592)
                      +..........-+..|+           +...+|||.||++++.++||+.||..+   +....+|.+..-+........ 
T Consensus       174 g~tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~~P~~-  252 (378)
T KOG1345|consen  174 GTTVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNPALPKK-  252 (378)
T ss_pred             CceehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCccCchh-
Confidence            43221111111111221           456789999999999999999999532   223333333222221111111 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          522 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       522 ~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                         ...+.    +.+..+.++-+..++++|=...++.++
T Consensus       253 ---F~~fs----~~a~r~Fkk~lt~~~~drcki~~~kk~  284 (378)
T KOG1345|consen  253 ---FNPFS----EKALRLFKKSLTPRFKDRCKIWTAKKM  284 (378)
T ss_pred             ---hcccC----HHHHHHHHHhcCCcccccchhHHHHHH
Confidence               12222    356777888888999999544444443

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=2.2e-24  Score=214.97  Aligned_cols=141  Identities=21%  Similarity=0.214  Sum_probs=113.5

Q ss_pred             CCHHHHHH-HHhhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-----C---C
Q 007711          290 LKRSELEA-ACEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-----H---K  359 (592)
Q Consensus       290 ~~~~el~~-~~~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-----H---~  359 (592)
                      ....|.-. .++-..++||-|.|++||.+-. .+.+.||+|+++...      ...+.-..||++|++++     |   .
T Consensus        69 V~IGD~F~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAq------hYtEaAlDEIklL~~v~~~Dp~~~~~~  142 (590)
T KOG1290|consen   69 VRIGDVFNGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQ------HYTEAALDEIKLLQQVREGDPNDPGKK  142 (590)
T ss_pred             eeccccccCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhh------HHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence            33334333 4555568999999999999974 457789999876432      35566788999999884     3   3


Q ss_pred             ceeeeeEEEecCCC--cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCe
Q 007711          360 NFVNLIGFCEEEEP--FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAV  436 (592)
Q Consensus       360 niv~l~g~~~~~~~--~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~Ni  436 (592)
                      +||+|++++...++  .++|+|+|++ +-+|..+|.....+.++.....+|+.||..||.|||. |+  |+|-||||+||
T Consensus       143 ~VV~LlD~FkhsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecg--IIHTDlKPENv  219 (590)
T KOG1290|consen  143 CVVQLLDHFKHSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECG--IIHTDLKPENV  219 (590)
T ss_pred             eeeeeeccceecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcC--ccccCCCccee
Confidence            69999999976543  3689999999 6689899887778889999999999999999999995 67  99999999999


Q ss_pred             EEc
Q 007711          437 HLT  439 (592)
Q Consensus       437 Ll~  439 (592)
                      |+.
T Consensus       220 Ll~  222 (590)
T KOG1290|consen  220 LLC  222 (590)
T ss_pred             eee
Confidence            993

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.91  E-value=8.6e-25  Score=225.08  Aligned_cols=238  Identities=21%  Similarity=0.305  Sum_probs=181.2

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +...+|.|.||.|||++. ..+...|||+++.....++     .-..+|+-+++..+|+|||.++|-+...+  ..++.|
T Consensus        19 llqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~-----~~iqqei~~~~dc~h~nivay~gsylr~d--klwicM   91 (829)
T KOG0576|consen   19 LLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDF-----SGIQQEIGMLRDCRHPNIVAYFGSYLRRD--KLWICM   91 (829)
T ss_pred             heeeecCCcccchhhhcccccCchhhheeeeccCCccc-----cccccceeeeecCCCcChHHHHhhhhhhc--CcEEEE
Confidence            346799999999999995 4688889999987665442     34567899999999999999999988777  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      |||.+|+|.+.-+.  ...++..+...+++...+|++|||+.+  -+|||||-.|||+.+.+.+|++|||.+..++..- 
T Consensus        92 EycgggslQdiy~~--TgplselqiayvcRetl~gl~ylhs~g--k~hRdiKGanilltd~gDvklaDfgvsaqitati~  167 (829)
T KOG0576|consen   92 EYCGGGSLQDIYHV--TGPLSELQIAYVCRETLQGLKYLHSQG--KIHRDIKGANILLTDEGDVKLADFGVSAQITATIA  167 (829)
T ss_pred             EecCCCcccceeee--cccchhHHHHHHHhhhhccchhhhcCC--cccccccccceeecccCceeecccCchhhhhhhhh
Confidence            99999999987763  356888888899999999999999998  8999999999999999999999999987765321 


Q ss_pred             --hhhcccccCCCCC---------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          460 --MAATSKKLSSAPS---------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       460 --~~~~~~~~~~~~~---------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                        .....+.+|++|+         |..++|||+.|++..|+---+.|..    ++.....-++.....   +..|.+. -
T Consensus       168 KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplf----dlhpmr~l~LmTkS~---~qpp~lk-D  239 (829)
T KOG0576|consen  168 KRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLF----DLHPMRALFLMTKSG---FQPPTLK-D  239 (829)
T ss_pred             hhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCccc----ccchHHHHHHhhccC---CCCCccc-C
Confidence              1122345777776         6789999999999999977666631    111111111111111   1112222 1


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIA  558 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~  558 (592)
                      ...+.+.+.++++.|+..+|++||+++.++
T Consensus       240 k~kws~~fh~fvK~altknpKkRptaeklL  269 (829)
T KOG0576|consen  240 KTKWSEFFHNFVKGALTKNPKKRPTAEKLL  269 (829)
T ss_pred             CccchHHHHHHHHHHhcCCCccCCChhhhe
Confidence            334556789999999999999999987654

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.89  E-value=1.8e-23  Score=198.83  Aligned_cols=244  Identities=18%  Similarity=0.260  Sum_probs=171.7

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cceEE
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTRMM  378 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~~~l  378 (592)
                      ..+|.|.- .|..+.. -.++.|++|++.... ..  ....+...+|..++..+.|+||++++.+++-.+.    ...|+
T Consensus        23 ~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf-~n--~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~   98 (369)
T KOG0665|consen   23 KPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPF-QN--QTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYL   98 (369)
T ss_pred             cccCCCCc-eEEecchhhccCceehhhhcCcc-cc--CccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHH
Confidence            34777776 5555542 247788888775542 22  2234566789999999999999999999875431    24689


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |||||. ++|...++    ..++-.+...|..|++.|+.|||+.+  |+||||||+||++..+...||.|||+++...+.
T Consensus        99 v~e~m~-~nl~~vi~----~elDH~tis~i~yq~~~~ik~lhs~~--IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~  171 (369)
T KOG0665|consen   99 VMELMD-ANLCQVIL----MELDHETISYILYQMLCGIKHLHSAG--IIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD  171 (369)
T ss_pred             HHHhhh-hHHHHHHH----HhcchHHHHHHHHHHHHHHHHHHhcc--eeecccCcccceecchhheeeccchhhcccCcc
Confidence            999994 58887776    34566778899999999999999999  999999999999999999999999999876544


Q ss_pred             -h-hhhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHH--------------------
Q 007711          459 -E-MAATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY--------------------  510 (592)
Q Consensus       459 -~-~~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~--------------------  510 (592)
                       . .-+....++++|+      +.+.+||||.||++.||++|+.-|.+ ...+.+|.+..                    
T Consensus       172 ~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g-~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~  250 (369)
T KOG0665|consen  172 FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPG-KDHIDQWNKIIEQLGTPDPSFMKQLQPTVRN  250 (369)
T ss_pred             cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecC-chHHHHHHHHHHHhcCCCHHHHHHhhHHHHH
Confidence             1 1122234666665      67889999999999999999988842 22233333211                    


Q ss_pred             -hcCC-----CCCccccCCCC----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          511 -LSGV-----QPLQQFVDPTL----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       511 -~~~~-----~~~~~~~~~~~----~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       ....     ..+.+.+....    ...+.-....+.+++.+++-.+|++|.+.++++.
T Consensus       251 yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~  309 (369)
T KOG0665|consen  251 YVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALR  309 (369)
T ss_pred             HhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhc
Confidence             1100     01111111110    0111112345789999999999999999999875

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-23  Score=200.61  Aligned_cols=233  Identities=19%  Similarity=0.239  Sum_probs=168.5

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.++||+|+|.+|..+++ +..+.+|+|++++.-..+  .+...-...|-.+.... +||.+|.+..++....  ..++|
T Consensus       254 ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nd--dedidwvqtek~vfe~asn~pflvglhscfqtes--rlffv  329 (593)
T KOG0695|consen  254 LLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVND--DEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTES--RLFFV  329 (593)
T ss_pred             eeeeecCcchhhhhheehcccceeeehhhHHHHhcCC--cccchhHHhhHHHHHhccCCCeEEehhhhhcccc--eEEEE
Confidence            347899999999999986 457788998886544332  11122233444455444 7999999998887665  67899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      .||+++|+|--+++  ....++.....-+...|.-||.|||+.+  |+.||||..|+|+|..+.+|++|||+++.--.. 
T Consensus       330 ieyv~ggdlmfhmq--rqrklpeeharfys~ei~lal~flh~rg--iiyrdlkldnvlldaeghikltdygmcke~l~~g  405 (593)
T KOG0695|consen  330 IEYVNGGDLMFHMQ--RQRKLPEEHARFYSAEICLALNFLHERG--IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPG  405 (593)
T ss_pred             EEEecCcceeeehh--hhhcCcHHHhhhhhHHHHHHHHHHhhcC--eeeeeccccceEEccCCceeecccchhhcCCCCC
Confidence            99999999966554  4456788888888899999999999999  999999999999999999999999998864211 


Q ss_pred             --------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCC-----CChHHHHHHHhcCCCCCccccCCCC
Q 007711          459 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN-----GSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       459 --------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                              ...+.+++..+..+|....|+|++||+++||+.|+.||+.-+     ..-+++.-..+-+         ..+
T Consensus       406 d~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvile---------kqi  476 (593)
T KOG0695|consen  406 DTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILE---------KQI  476 (593)
T ss_pred             cccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhh---------hcc
Confidence                    112233455566678999999999999999999999997322     2223333222211         100


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCC
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRP  552 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RP  552 (592)
                       ..+...+.+...+++.-+.+||.+|.
T Consensus       477 -riprslsvkas~vlkgflnkdp~erl  502 (593)
T KOG0695|consen  477 -RIPRSLSVKASHVLKGFLNKDPKERL  502 (593)
T ss_pred             -cccceeehhhHHHHHHhhcCCcHHhc
Confidence             11222223466788888999999986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.89  E-value=9e-24  Score=241.38  Aligned_cols=186  Identities=16%  Similarity=0.178  Sum_probs=127.7

Q ss_pred             CCC-CceeeeeEEEecCC-----CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEee
Q 007711          356 VNH-KNFVNLIGFCEEEE-----PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHN  429 (592)
Q Consensus       356 l~H-~niv~l~g~~~~~~-----~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~  429 (592)
                      ++| .||++++++|....     ....+.++||+ .++|+++++.. ...+++..++.++.||++||+|||+++  |+||
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~g--IvHr  104 (793)
T PLN00181         29 LSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNP-DRSVDAFECFHVFRQIVEIVNAAHSQG--IVVH  104 (793)
T ss_pred             hhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcc-cccccHHHHHHHHHHHHHHHHHHHhCC--eeec
Confidence            445 58888888772211     01346778887 56999999632 356899999999999999999999999  9999


Q ss_pred             CcCCCCeEEc-------------------CCCceEEecCCcchhhhhh-------------------------hhhhccc
Q 007711          430 YLNSSAVHLT-------------------EDYAAKLSDLSFWNEIAMA-------------------------EMAATSK  465 (592)
Q Consensus       430 dLk~~NiLl~-------------------~~~~~ki~DfGla~~~~~~-------------------------~~~~~~~  465 (592)
                      ||||+||||+                   .++.+|++|||+++.....                         ...+.+|
T Consensus       105 DlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  184 (793)
T PLN00181        105 NVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSP  184 (793)
T ss_pred             cCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceECh
Confidence            9999999994                   4556778888887643210                         0112333


Q ss_pred             ccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcc
Q 007711          466 KLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVR  545 (592)
Q Consensus       466 ~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~  545 (592)
                      |......++.++|||||||+||||++|..|+.....    ........      ..++..    ........+++.+||+
T Consensus       185 E~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~----~~~~~~~~------~~~~~~----~~~~~~~~~~~~~~L~  250 (793)
T PLN00181        185 EEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSR----TMSSLRHR------VLPPQI----LLNWPKEASFCLWLLH  250 (793)
T ss_pred             hhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHH----HHHHHHHh------hcChhh----hhcCHHHHHHHHHhCC
Confidence            333333368999999999999999999888742111    11111100      011111    0112345688899999


Q ss_pred             cCCCCCCCHHHHHH
Q 007711          546 ADPEKRPTMRDIAA  559 (592)
Q Consensus       546 ~dP~~RPs~~ev~~  559 (592)
                      .+|.+||+|.|+++
T Consensus       251 ~~P~~Rps~~eil~  264 (793)
T PLN00181        251 PEPSCRPSMSELLQ  264 (793)
T ss_pred             CChhhCcChHHHhh
Confidence            99999999999975

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.89  E-value=3e-23  Score=207.96  Aligned_cols=198  Identities=16%  Similarity=0.201  Sum_probs=157.1

Q ss_pred             CCCHHHHHHHHhhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC------CCce
Q 007711          289 KLKRSELEAACEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN------HKNF  361 (592)
Q Consensus       289 ~~~~~el~~~~~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~------H~ni  361 (592)
                      .+...|+...++......|+|-|++|.+|.. ..|..||||++......      .+.=.+|+++|.+++      .-|+
T Consensus       423 rv~igE~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M------~KtGl~EleiLkKL~~AD~Edk~Hc  496 (752)
T KOG0670|consen  423 RVRIGELLDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVM------HKTGLKELEILKKLNDADPEDKFHC  496 (752)
T ss_pred             EEehhhhhcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHH------hhhhhHHHHHHHHhhccCchhhhHH
Confidence            4556777777777778899999999999984 45889999999765433      344567999999984      3478


Q ss_pred             eeeeEEEecCCCcceEEEEeeCCCCCchhhccc-cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC
Q 007711          362 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHI-KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE  440 (592)
Q Consensus       362 v~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~  440 (592)
                      ++|+-.+...+  +.|||+|-+. .+|.+.|.. +....|.......++.|+.-||..|-.|+  |+|.||||.|||+++
T Consensus       497 lrl~r~F~hkn--HLClVFE~Ls-lNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~--vlHaDIKPDNiLVNE  571 (752)
T KOG0670|consen  497 LRLFRHFKHKN--HLCLVFEPLS-LNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCG--VLHADIKPDNILVNE  571 (752)
T ss_pred             HHHHHHhhhcc--eeEEEehhhh-chHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcC--eeecccCccceEecc
Confidence            88888887777  7899999874 588888864 23455677788889999999999999999  999999999999997


Q ss_pred             CC-ceEEecCCcchhhhhhhh-------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCccc
Q 007711          441 DY-AAKLSDLSFWNEIAMAEM-------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYL  497 (592)
Q Consensus       441 ~~-~~ki~DfGla~~~~~~~~-------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~  497 (592)
                      .- ..||||||.|........       .+.+|+...+-.|...-|+||.||+||||+||+.-|.
T Consensus       572 ~k~iLKLCDfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFp  636 (752)
T KOG0670|consen  572 SKNILKLCDFGSASFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFP  636 (752)
T ss_pred             CcceeeeccCccccccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecC
Confidence            64 679999999877654332       2333444444447889999999999999999999884

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.88  E-value=1.3e-22  Score=210.24  Aligned_cols=230  Identities=20%  Similarity=0.336  Sum_probs=170.5

Q ss_pred             HhcCCCCceeeeeEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcC
Q 007711          353 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN  432 (592)
Q Consensus       353 l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk  432 (592)
                      |+.+.|.|+.+++|.|..+.  ..++|.+||..|+|.|.+.. ....++|.....+..+++.||+|||.... .+|+.|+
T Consensus         1 l~~l~h~n~~~f~g~~~~~~--~~~~i~~~c~rGsl~D~i~~-~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i-~~hg~l~   76 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGP--EMIVIWEYCSRGSLLDILSN-EDIKLDYFFILSFIRDISKGLAYLHNSPI-GYHGALK   76 (484)
T ss_pred             CcccchhhhhhheeeEecCC--ceEEEEeeecCccHHhHHhc-cccCccHHHHHHHHHHHHHHHHHHhcCcc-eeeeeec
Confidence            45688999999999999886  67999999999999999964 56789999999999999999999997652 3999999


Q ss_pred             CCCeEEcCCCceEEecCCcchhhhh-----------hhhhhcccccCCC-------CCCCCCCcchhhHHHHHHHHhCCC
Q 007711          433 SSAVHLTEDYAAKLSDLSFWNEIAM-----------AEMAATSKKLSSA-------PSASLESNVYNFGVLLFEMVTGRL  494 (592)
Q Consensus       433 ~~NiLl~~~~~~ki~DfGla~~~~~-----------~~~~~~~~~~~~~-------~~~s~ksDVwSfGvvl~El~tG~~  494 (592)
                      ++||++|..+.+||+|||+......           ....+.+|+..+.       +..+.++||||||++++|+++.+.
T Consensus        77 s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~  156 (484)
T KOG1023|consen   77 SSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSG  156 (484)
T ss_pred             cccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccC
Confidence            9999999999999999999776631           1112233332221       124778999999999999999999


Q ss_pred             cccCCC--CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC--C
Q 007711          495 PYLVDN--GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP--D  570 (592)
Q Consensus       495 P~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~--~  570 (592)
                      ||....  .+..+.+.....+   ......|.+.... +...++..++.+||..+|.+||+++++...++.+.....  .
T Consensus       157 ~~~~~~~~~~~~eii~~~~~~---~~~~~rP~i~~~~-e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~~~~~~  232 (484)
T KOG1023|consen  157 PFDLRNLVEDPDEIILRVKKG---GSNPFRPSIELLN-ELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINKGGSSKG  232 (484)
T ss_pred             ccccccccCChHHHHHHHHhc---CCCCcCcchhhhh-hcchHHHHHHHHhcccChhhCccHHHHHhhhhhhcccccccc
Confidence            997533  2333444443321   1222333333222 444578999999999999999999999999999988753  2


Q ss_pred             CCCC---ccCcccHHHHHhhhcc
Q 007711          571 GAIP---KLSPLWWAEIEILSTE  590 (592)
Q Consensus       571 ~~~p---~~~~~~~~~~~~~~~~  590 (592)
                      +.++   +..+.+-..+|.++.|
T Consensus       233 nl~D~m~~~le~Y~~nLe~~v~e  255 (484)
T KOG1023|consen  233 NLMDSLFRMLESYADNLEKLVDE  255 (484)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHH
Confidence            3333   4455555556655543

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.87  E-value=3.6e-22  Score=185.83  Aligned_cols=164  Identities=18%  Similarity=0.224  Sum_probs=117.0

Q ss_pred             CCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh----hh
Q 007711          386 GTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE----MA  461 (592)
Q Consensus       386 gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~----~~  461 (592)
                      |+|.++++. ....++|..+..|+.|++.||+|||+.+        ||+|||+++++.+|+  ||+++......    ..
T Consensus         1 GsL~~~l~~-~~~~l~~~~~~~i~~qi~~~L~~lH~~~--------kp~Nil~~~~~~~~~--fG~~~~~~~~~~~g~~~   69 (176)
T smart00750        1 VSLADILEV-RGRPLNEEEIWAVCLQCLRALRELHRQA--------KSGNILLTWDGLLKL--DGSVAFKTPEQSRVDPY   69 (176)
T ss_pred             CcHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHhcC--------CcccEeEcCccceee--ccceEeeccccCCCccc
Confidence            688888864 2456999999999999999999999875        999999999999999  99987654321    22


Q ss_pred             hcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH--HHHHH
Q 007711          462 ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE--TLGEL  539 (592)
Q Consensus       462 ~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l  539 (592)
                      +.+||......++.++|||||||++|||+||+.||..... ...............    ++...........  ++.++
T Consensus        70 y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  144 (176)
T smart00750       70 FMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERE-LSAILEILLNGMPAD----DPRDRSNLESVSAARSFADF  144 (176)
T ss_pred             ccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccch-hcHHHHHHHHHhccC----CccccccHHHHHhhhhHHHH
Confidence            3334444444478899999999999999999999953321 122222222211111    0100111222223  68999


Q ss_pred             HHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          540 IKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       540 ~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      +.+||+.+|++||++.|+++.+..+.
T Consensus       145 i~~cl~~~p~~Rp~~~~ll~~~~~~~  170 (176)
T smart00750      145 MRVCASRLPQRREAANHYLAHCRALF  170 (176)
T ss_pred             HHHHHhcccccccCHHHHHHHHHHHH
Confidence            99999999999999999999887664

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.86  E-value=2.8e-22  Score=203.45  Aligned_cols=188  Identities=18%  Similarity=0.273  Sum_probs=147.4

Q ss_pred             cccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCC--Cc-hhHHHHHHHHHHHHhcCC---CCceeeeeEEEecCCCcce
Q 007711          304 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKD--WP-KNLEVQFRKKIDTLSKVN---HKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~--~~-~~~~~~f~~e~~~l~~l~---H~niv~l~g~~~~~~~~~~  376 (592)
                      ..+|+|+||.|+.+.++. ..+|+||.+.+.+.-.  |- ..-.-....||++|..++   |+||++++.++.+.+  ..
T Consensus       567 q~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEddd--~y  644 (772)
T KOG1152|consen  567 QPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFEDDD--YY  644 (772)
T ss_pred             eeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeecCC--ee
Confidence            679999999999999754 5678888875432110  00 000112446999999997   999999999999988  66


Q ss_pred             EEEEeeC-CCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          377 MMVFEYA-PNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       377 ~lv~Ey~-~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      ||+||-. ++-+|++++..  ...++.....-|..||+.|+++||+.+  |||||||-+|+.+|.+|-+||.|||.+...
T Consensus       645 yl~te~hg~gIDLFd~IE~--kp~m~E~eAk~IFkQV~agi~hlh~~~--ivhrdikdenvivd~~g~~klidfgsaa~~  720 (772)
T KOG1152|consen  645 YLETEVHGEGIDLFDFIEF--KPRMDEPEAKLIFKQVVAGIKHLHDQG--IVHRDIKDENVIVDSNGFVKLIDFGSAAYT  720 (772)
T ss_pred             EEEecCCCCCcchhhhhhc--cCccchHHHHHHHHHHHhccccccccC--ceecccccccEEEecCCeEEEeeccchhhh
Confidence            8999974 56688999863  456888899999999999999999999  999999999999999999999999998765


Q ss_pred             hhh-------hhhhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCccc
Q 007711          456 AMA-------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYL  497 (592)
Q Consensus       456 ~~~-------~~~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~  497 (592)
                      ..+       ...+++|+...+ +......|||++||+||.++....||.
T Consensus       721 ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  721 KSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             cCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            432       233445554433 334667899999999999999988883

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.86  E-value=1.6e-21  Score=192.27  Aligned_cols=241  Identities=18%  Similarity=0.281  Sum_probs=171.1

Q ss_pred             hcccCcCCCeEEEEEEeC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceE
Q 007711          303 SNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~  377 (592)
                      .++||+|.|++||++...    ....||+|.+......       .....|+++|..+ .|.||+++.++....+  .+.
T Consensus        41 v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p-------~ri~~El~~L~~~gG~~ni~~~~~~~rnnd--~v~  111 (418)
T KOG1167|consen   41 VNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSP-------SRILNELEMLYRLGGSDNIIKLNGCFRNND--QVA  111 (418)
T ss_pred             hccccccchhhhhhhhHhhhccccceEeeeecccccCc-------hHHHHHHHHHHHhccchhhhcchhhhccCC--eeE
Confidence            478999999999999853    4678999988665433       3578899999999 5999999999998877  789


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC-CceEEecCCcchhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIA  456 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~-~~~ki~DfGla~~~~  456 (592)
                      +|+||++.-.-.++..     .++......+...+.+||+++|..+  |||||+||+|+|.+.. +.-.|.|||++....
T Consensus       112 ivlp~~~H~~f~~l~~-----~l~~~~i~~Yl~~ll~Al~~~h~~G--IvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d  184 (418)
T KOG1167|consen  112 IVLPYFEHDRFRDLYR-----SLSLAEIRWYLRNLLKALAHLHKNG--IVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYD  184 (418)
T ss_pred             EEecccCccCHHHHHh-----cCCHHHHHHHHHHHHHHhhhhhccC--ccccCCCccccccccccCCceEEechhHHHHH
Confidence            9999999988877765     3567778889999999999999999  9999999999999854 567899999987321


Q ss_pred             hhh------h------hh--------------c---------------------ccccCCCCC-------CCCCCcchhh
Q 007711          457 MAE------M------AA--------------T---------------------SKKLSSAPS-------ASLESNVYNF  482 (592)
Q Consensus       457 ~~~------~------~~--------------~---------------------~~~~~~~~~-------~s~ksDVwSf  482 (592)
                      ...      .      ..              .                     .+..+++||       .+++.||||-
T Consensus       185 ~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~  264 (418)
T KOG1167|consen  185 GYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSA  264 (418)
T ss_pred             hhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeec
Confidence            000      0      00              0                     001223344       4788999999


Q ss_pred             HHHHHHHHhCCCcccCCCCC---hHHHHH----------HHhcCC------CC----------Cccc----cCC--C---
Q 007711          483 GVLLFEMVTGRLPYLVDNGS---LEDWAA----------DYLSGV------QP----------LQQF----VDP--T---  524 (592)
Q Consensus       483 Gvvl~El~tG~~P~~~~~~~---~~~~~~----------~~~~~~------~~----------~~~~----~~~--~---  524 (592)
                      |||++-+++++.||.....+   +.+.+-          ..+.+.      ..          +..+    +.+  .   
T Consensus       265 GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~  344 (418)
T KOG1167|consen  265 GVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNT  344 (418)
T ss_pred             cceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhcccccccce
Confidence            99999999999999543322   222110          011111      00          0000    000  0   


Q ss_pred             -CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 -LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 -~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       .....+.-+..+++++.+|+..||.+|.|++|.++
T Consensus       345 ~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALk  380 (418)
T KOG1167|consen  345 EREIGSDVFPALLLDLLDKCLELNPQKRITAEDALK  380 (418)
T ss_pred             eeccccccccHHHHHHHHHHccCChhhcccHHHHhc
Confidence             00011112346889999999999999999998874

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.83  E-value=2.8e-20  Score=189.70  Aligned_cols=140  Identities=16%  Similarity=0.062  Sum_probs=107.7

Q ss_pred             hhhcccCcCCCeEEEEEEeC--CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS--NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~--~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      .+.+.||+|+||+||+|...  ++..+|||++.............+.|.+|+++|++++|+|+++.+..+   +  ..++
T Consensus        21 ~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~---~--~~~L   95 (365)
T PRK09188         21 VETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT---G--KDGL   95 (365)
T ss_pred             eEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc---C--CcEE
Confidence            34678999999999999864  577789987652211001123456799999999999999998533222   2  4589


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCc-CCCCeEEcCCCceEEecCCcchhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL-NSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dL-k~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ||||+++++|... .  ...      ...++.+++++|+|||+.+  |+|||| ||+|||++.++.+||+|||+++.+.
T Consensus        96 VmE~~~G~~L~~~-~--~~~------~~~~~~~i~~aL~~lH~~g--IiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~  163 (365)
T PRK09188         96 VRGWTEGVPLHLA-R--PHG------DPAWFRSAHRALRDLHRAG--ITHNDLAKPQNWLMGPDGEAAVIDFQLASVFR  163 (365)
T ss_pred             EEEccCCCCHHHh-C--ccc------hHHHHHHHHHHHHHHHHCC--CeeCCCCCcceEEEcCCCCEEEEECccceecc
Confidence            9999999999632 1  111      1457889999999999998  999999 9999999999999999999998653

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.81  E-value=4.9e-19  Score=180.97  Aligned_cols=250  Identities=16%  Similarity=0.189  Sum_probs=173.6

Q ss_pred             hhhhcccCcCCCeEEEEEEeCCC--cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCC----CceeeeeEEEe-cCC
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSNG--VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH----KNFVNLIGFCE-EEE  372 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~~--~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H----~niv~l~g~~~-~~~  372 (592)
                      ..+.+.||+|+||.||++.....  ..+|+|.........     ...+..|+.++..+.+    .++..++.... ...
T Consensus        20 ~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~-----~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~   94 (322)
T KOG1164|consen   20 YKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSK-----PSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTED   94 (322)
T ss_pred             eEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCC-----CccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCc
Confidence            34568899999999999996543  467777765433221     1146678888888763    57777777763 333


Q ss_pred             CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC-----CceEEe
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-----YAAKLS  447 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~-----~~~ki~  447 (592)
                        ..++||+.+ +.+|.++........++..+.++|+.|+..+|++||+.+  ++||||||.|++++..     ..+.+.
T Consensus        95 --~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G--~iHRDiKp~N~~~g~~~~~~~~~~~ll  169 (322)
T KOG1164|consen   95 --FNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKG--FIHRDIKPENFVVGQSSRSEVRTLYLL  169 (322)
T ss_pred             --eeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcC--cccCCcCHHHeeecCCCCcccceEEEE
Confidence              568999988 779998775444578999999999999999999999999  9999999999999865     468999


Q ss_pred             cCCcchhhh--hhhhh----h-c------------ccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChH-HHH
Q 007711          448 DLSFWNEIA--MAEMA----A-T------------SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE-DWA  507 (592)
Q Consensus       448 DfGla~~~~--~~~~~----~-~------------~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~-~~~  507 (592)
                      |||+++.+.  .....    . .            +.......+.+.+.|+||++.++.|++.|..||........ ...
T Consensus       170 DfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~  249 (322)
T KOG1164|consen  170 DFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKF  249 (322)
T ss_pred             ecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHH
Confidence            999999332  11110    0 0            00111233467889999999999999999999953332111 111


Q ss_pred             HHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      ...... ..    ...    .....+.++.+++..+-..+..++|....+...|+......
T Consensus       250 ~~~~~~-~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~~~  301 (322)
T KOG1164|consen  250 EKDPRK-LL----TDR----FGDLKPEEFAKILEYIDSLDYEDKPDYEKLAELLKDVFDSE  301 (322)
T ss_pred             HHHhhh-hc----ccc----ccCCChHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHhc
Confidence            111111 00    000    11222345666777777789999999999999998887654

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.81  E-value=1.8e-19  Score=168.99  Aligned_cols=143  Identities=13%  Similarity=0.096  Sum_probs=108.0

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCch---------------------hHHHHHHHHHHHHhcCCCCcee
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPK---------------------NLEVQFRKKIDTLSKVNHKNFV  362 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~---------------------~~~~~f~~e~~~l~~l~H~niv  362 (592)
                      ..||+|+||.||+|...+|..||||++..........                     ........|++.+.++.|+++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v~   82 (190)
T cd05147           3 GCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIP   82 (190)
T ss_pred             CccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            5799999999999998889999999987643211000                     0012234589999999887764


Q ss_pred             eeeEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCeEeeCcCCCCeEEcCC
Q 007711          363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYLNSSAVHLTED  441 (592)
Q Consensus       363 ~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yL-H~~~~~ivH~dLk~~NiLl~~~  441 (592)
                      ....+...    ..++||||++++++.....  ....+++....+++.+++.+|.|+ |+.+  |+||||||+|||++ +
T Consensus        83 ~p~~~~~~----~~~iVmE~i~g~~l~~~~~--~~~~~~~~~~~~i~~qi~~~L~~l~H~~g--iiHrDlkP~NIli~-~  153 (190)
T cd05147          83 CPEPILLK----SHVLVMEFIGDDGWAAPRL--KDAPLSESKARELYLQVIQIMRILYQDCR--LVHADLSEYNLLYH-D  153 (190)
T ss_pred             CCcEEEec----CCEEEEEEeCCCCCcchhh--hcCCCCHHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEE-C
Confidence            43332222    2379999999887754432  234688899999999999999999 6888  99999999999998 4


Q ss_pred             CceEEecCCcchhh
Q 007711          442 YAAKLSDLSFWNEI  455 (592)
Q Consensus       442 ~~~ki~DfGla~~~  455 (592)
                      +.++|+|||++...
T Consensus       154 ~~v~LiDFG~a~~~  167 (190)
T cd05147         154 GKLYIIDVSQSVEH  167 (190)
T ss_pred             CcEEEEEccccccC
Confidence            78999999998754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.80  E-value=4.9e-19  Score=166.66  Aligned_cols=144  Identities=14%  Similarity=0.083  Sum_probs=110.1

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCC---------------------CchhHHHHHHHHHHHHhcCCCCcee
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKD---------------------WPKNLEVQFRKKIDTLSKVNHKNFV  362 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~---------------------~~~~~~~~f~~e~~~l~~l~H~niv  362 (592)
                      ..||+|+||.||+|...+|..||||++.......                     ........+..|.+.+.+++|+++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   82 (190)
T cd05145           3 GCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGVP   82 (190)
T ss_pred             ceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            5799999999999997789999999987643110                     0001122346789999999999875


Q ss_pred             eeeEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCC
Q 007711          363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTED  441 (592)
Q Consensus       363 ~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~  441 (592)
                      ....+...    ..++||||++++++.....  ....++.....+++.+++.++.++|+ .+  |+||||||+||+++ +
T Consensus        83 ~p~~~~~~----~~~lVmE~~~g~~~~~~~l--~~~~~~~~~~~~i~~~l~~~l~~lH~~~g--ivHrDlkP~NIll~-~  153 (190)
T cd05145          83 VPEPILLK----KNVLVMEFIGDDGSPAPRL--KDVPLEEEEAEELYEQVVEQMRRLYQEAG--LVHGDLSEYNILYH-D  153 (190)
T ss_pred             CceEEEec----CCEEEEEEecCCCchhhhh--hhccCCHHHHHHHHHHHHHHHHHHHHhCC--EecCCCChhhEEEE-C
Confidence            54444332    2379999999886543321  12346777889999999999999999 88  99999999999999 8


Q ss_pred             CceEEecCCcchhhh
Q 007711          442 YAAKLSDLSFWNEIA  456 (592)
Q Consensus       442 ~~~ki~DfGla~~~~  456 (592)
                      +.++|+|||+++...
T Consensus       154 ~~~~liDFG~a~~~~  168 (190)
T cd05145         154 GKPYIIDVSQAVELD  168 (190)
T ss_pred             CCEEEEEcccceecC
Confidence            899999999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.78  E-value=3.9e-19  Score=168.69  Aligned_cols=171  Identities=12%  Similarity=0.116  Sum_probs=125.3

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHH------HHHHHHHHhcCCCCceeeeeEEEecCC--
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ------FRKKIDTLSKVNHKNFVNLIGFCEEEE--  372 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~------f~~e~~~l~~l~H~niv~l~g~~~~~~--  372 (592)
                      ...+.+|.|+||.||.... ++..+++|.+.......  ......      |.+|+..+.+++|++|.....+.....  
T Consensus        34 ~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~--~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~~  110 (232)
T PRK10359         34 KTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRT--ERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAERK  110 (232)
T ss_pred             EEEEEecCCCceEEEEEec-CCCcEEEEEechhcCch--HHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecccc
Confidence            3458899999999999765 56789999886544322  122222      679999999999999999888754321  


Q ss_pred             ----CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEec
Q 007711          373 ----PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD  448 (592)
Q Consensus       373 ----~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~D  448 (592)
                          ....++||||+++.+|.++..      ++.    ....+++.++..+|+.+  ++|||+||+||+++.++ +++.|
T Consensus       111 ~~~~~~~~~lvmEyi~G~tL~~~~~------~~~----~~~~~i~~~l~~lH~~g--i~H~Dikp~Nili~~~g-i~liD  177 (232)
T PRK10359        111 TLRYAHTYIMLIEYIEGVELNDMPE------ISE----DVKAKIKASIESLHQHG--MVSGDPHKGNFIVSKNG-LRIID  177 (232)
T ss_pred             cccccCCeEEEEEEECCccHHHhhh------ccH----HHHHHHHHHHHHHHHcC--CccCCCChHHEEEeCCC-EEEEE
Confidence                114689999999999977632      222    24568999999999999  99999999999999988 99999


Q ss_pred             CCcchhhhhhhhhhcccccCCCCCCCCCCcchhhHHHHHHHH
Q 007711          449 LSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMV  490 (592)
Q Consensus       449 fGla~~~~~~~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~  490 (592)
                      ||..+........   ..+.....+..++|+|||||++.-+.
T Consensus       178 fg~~~~~~e~~a~---d~~vler~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        178 LSGKRCTAQRKAK---DRIDLERHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             CCCcccccchhhH---HHHHHHhHhcccccccceeEeehHHH
Confidence            9987765321110   11222223556899999999987654

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.78  E-value=1.6e-17  Score=169.28  Aligned_cols=247  Identities=22%  Similarity=0.287  Sum_probs=177.5

Q ss_pred             hcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCC-ceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK-NFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~-niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      ...||.|+||.||++...  ..+++|.+.......  ......|.+|+..++.+.|+ +++++..++....  ..+++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~   78 (384)
T COG0515           5 LRKLGEGSFGEVYLARDR--KLVALKVLAKKLESK--SKEVERFLREIQILASLNHPPNIVKLYDFFQDEG--SLYLVME   78 (384)
T ss_pred             EEeecCCCCeEEEEEEec--cEEEEEeechhhccc--hhHHHHHHHHHHHHHHccCCcceeeEEEEEecCC--EEEEEEe
Confidence            467899999999999976  677888876544332  12467899999999999988 7999999996555  4689999


Q ss_pred             eCCCCCchhhccccCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC-ceEEecCCcchhhhhhh
Q 007711          382 YAPNGTLFEHIHIKES-EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~-~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~-~~ki~DfGla~~~~~~~  459 (592)
                      |+.++++.+++..... ..+.......+..+++.++.|+|..+  ++|||+||+||+++... .++++|||.++......
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~--~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~  156 (384)
T COG0515          79 YVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKG--IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPG  156 (384)
T ss_pred             cCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHeeecCCCCeEEEeccCcceecCCCC
Confidence            9999999966653221 26788889999999999999999999  99999999999999988 79999999987543221


Q ss_pred             ---------------hhhcccccCCC---CCCCCCCcchhhHHHHHHHHhCCCcccCCCCC--hHHHHHHHhcCCCC-Cc
Q 007711          460 ---------------MAATSKKLSSA---PSASLESNVYNFGVLLFEMVTGRLPYLVDNGS--LEDWAADYLSGVQP-LQ  518 (592)
Q Consensus       460 ---------------~~~~~~~~~~~---~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~--~~~~~~~~~~~~~~-~~  518 (592)
                                     ..+.+++....   ..+....|+||+|++++++++|..||......  .............. ..
T Consensus       157 ~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (384)
T COG0515         157 STSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLA  236 (384)
T ss_pred             ccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCcccc
Confidence                           11122222222   35677899999999999999999997543321  12222211111111 00


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       519 ~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      .....   .........+.+++..|+..+|..|.+..+....
T Consensus       237 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         237 SPLSP---SNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             cccCc---cccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence            00000   0001223467899999999999999999887764

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.77  E-value=1.1e-18  Score=159.94  Aligned_cols=250  Identities=14%  Similarity=0.170  Sum_probs=174.4

Q ss_pred             hhhhcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCC-CceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-KNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H-~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.++||.|+||.+|.|. ..+|.+||+|.-......       .++..|.++.+.++| ..|..+.-|..+..  .-.
T Consensus        17 y~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~h-------pqL~yEskvY~iL~~g~GiP~i~~y~~e~~--ynv   87 (341)
T KOG1163|consen   17 YKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKH-------PQLLYESKVYRILQGGVGIPHIRHYGTEKD--YNV   87 (341)
T ss_pred             eEEEEeecCCchhheeeeeeccCCceEEEEeecccCCC-------cchhHHHHHHHHhccCCCCchhhhhccccc--cce
Confidence            3456889999999999999 678999999976543322       246778888888876 34555555555555  558


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC---CceEEecCCcchh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED---YAAKLSDLSFWNE  454 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~---~~~ki~DfGla~~  454 (592)
                      +|||.+ +.+|.++.. -....++..+.+-+|-|+..-++|+|.++  ++||||||.|+|.+-+   ..+.+.|||+++.
T Consensus        88 lVMdLL-GPsLEdLfn-fC~R~ftmkTvLMLaDQml~RiEyvH~r~--fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKk  163 (341)
T KOG1163|consen   88 LVMDLL-GPSLEDLFN-FCSRRFTMKTVLMLADQMLSRIEYVHLRN--FIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKK  163 (341)
T ss_pred             eeeecc-CccHHHHHH-HHhhhhhHHhHHHHHHHHHHHHHHHHhhc--cccccCCccceeeccccccceEEEEeccchhh
Confidence            999998 779988764 35567889999999999999999999998  9999999999999844   4578999999998


Q ss_pred             hhhhhhhhcc----------c------ccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCc
Q 007711          455 IAMAEMAATS----------K------KLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ  518 (592)
Q Consensus       455 ~~~~~~~~~~----------~------~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~  518 (592)
                      +........-          +      .....-+.+.+.|+=|.|.||.+.--|..||.+-...-...-...+.+. ++.
T Consensus       164 y~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~tk~QKyEkI~Ek-K~s  242 (341)
T KOG1163|consen  164 YRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQKYEKISEK-KMS  242 (341)
T ss_pred             hccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchhhHHHHHHHHHHh-hcC
Confidence            7533211100          0      0011234577889999999999999999999532221111111111110 110


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       519 ~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      .    .+...+...+.++...+..|-..--++-|...-+.+.+.-++..
T Consensus       243 ~----~ie~LC~G~P~EF~myl~Y~R~L~F~E~Pdy~ylrqlFriLfr~  287 (341)
T KOG1163|consen  243 T----PIEVLCKGFPAEFAMYLNYCRGLGFEEKPDYMYLRQLFRILFRT  287 (341)
T ss_pred             C----CHHHHhCCCcHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHhh
Confidence            0    00111223346788889999999999999988877777666543

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.74  E-value=3.4e-17  Score=156.82  Aligned_cols=249  Identities=13%  Similarity=0.165  Sum_probs=174.3

Q ss_pred             hhcccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ..++||+|+||+++.|+ +-+++.||||.-..+..       .-+++.|-...+.+ ..++|...+-|-..+.  +-.||
T Consensus        32 VGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~-------APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~--~NiLV  102 (449)
T KOG1165|consen   32 VGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSE-------APQLRDEYRTYKLLGGTEGIPQVYYFGQEGK--YNILV  102 (449)
T ss_pred             eccccccCcceeeecccccccCceEEEEeccccCC-------cchHHHHHHHHHHHcCCCCCCceeeeccccc--hhhhh
Confidence            35789999999999999 56889999986543321       23466676666666 4677777655444443  45799


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC-----CceEEecCCcchh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-----YAAKLSDLSFWNE  454 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~-----~~~ki~DfGla~~  454 (592)
                      +|.+ +-||+|+.. -.++.++..+...||.|+..-++|+|++.  +|.|||||.|+||+.-     ..++|.|||+|+.
T Consensus       103 idLL-GPSLEDLFD-~CgR~FSvKTV~miA~Qmi~rie~vH~k~--LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~  178 (449)
T KOG1165|consen  103 IDLL-GPSLEDLFD-LCGRRFSVKTVAMIAKQMITRIEYVHEKD--LIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKE  178 (449)
T ss_pred             hhhh-CcCHHHHHH-HhcCcccHHhHHHHHHHHHHHHHHHHhcc--eeecccCccceeecCCCCCCCceEEEEeccchhh
Confidence            9998 778888764 45678999999999999999999999999  9999999999999843     4589999999998


Q ss_pred             hhhhhhhhc------------c----cccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCc
Q 007711          455 IAMAEMAAT------------S----KKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ  518 (592)
Q Consensus       455 ~~~~~~~~~------------~----~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~  518 (592)
                      +........            +    ..-..+.|.+.+.|.=|+|-|+++.+-|..||.+-...-...-...+.+.....
T Consensus       179 YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKIGe~Kr~T  258 (449)
T KOG1165|consen  179 YRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKIGETKRST  258 (449)
T ss_pred             hcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHhccccccC
Confidence            854332111            1    011134566888999999999999999999995433221111111111111000


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       519 ~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      .     +...++..++++...+.-.-..+-++-|..+-+...+.+++...
T Consensus       259 ~-----i~~Lc~g~P~efa~Yl~yvR~L~F~E~PDYdylr~Lf~dvldr~  303 (449)
T KOG1165|consen  259 P-----IEVLCEGFPEEFATYLRYVRRLDFFETPDYDYLRKLFDDVLDRL  303 (449)
T ss_pred             C-----HHHHHhcCHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHhc
Confidence            0     11223334566777777777778899999998888888876543

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=7.3e-19  Score=191.11  Aligned_cols=246  Identities=17%  Similarity=0.182  Sum_probs=163.5

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecc-cCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVAS-AKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~-~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+|.|++|.|+.... ......+.|...... ..+........+..|.-+-..+.|+|++..+..+.+..  ...-+|
T Consensus       323 ~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~--~~~~~m  400 (601)
T KOG0590|consen  323 GRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEID--GILQSM  400 (601)
T ss_pred             cceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcc--cchhhh
Confidence            46799999997777663 233334444333210 11111112222556777778889999988777666554  223449


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      |||++ +|+.++...  ..+....+..+..|+..|+.|+|+.+  +.|||+|++|+++..++.+||+|||.+..+..+..
T Consensus       401 E~~~~-Dlf~~~~~~--~~~~~~e~~c~fKqL~~Gv~y~h~~G--iahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e  475 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSN--GKLTPLEADCFFKQLLRGVKYLHSMG--LAHRDLKLENLLVTENGILKIIDFGAASVFRYPWE  475 (601)
T ss_pred             hcccH-HHHHHHhcc--cccchhhhhHHHHHHHHHHHHHHhcC--ceeccCccccEEEecCCceEEeecCcceeeccCcc
Confidence            99999 999988532  34666777889999999999999999  99999999999999999999999999877654332


Q ss_pred             h-------------hcccccCCCCCC-CCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          461 A-------------ATSKKLSSAPSA-SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       461 ~-------------~~~~~~~~~~~~-s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      .             +.++|.....+| ....||||-||++..|++|+.||.....+.....  ....  ....-+.....
T Consensus       476 ~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~--~~~~--~~~~~~~~~~~  551 (601)
T KOG0590|consen  476 KNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFK--TNNY--SDQRNIFEGPN  551 (601)
T ss_pred             hhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccchh--hhcc--ccccccccChH
Confidence            1             112233222233 3458999999999999999999965443322210  0000  00000000111


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ......+.+-+.++.++++.||.+|.|+++|++
T Consensus       552 ~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~  584 (601)
T KOG0590|consen  552 RLLSLLPRETRIIIYRMLQLDPTKRITIEQILN  584 (601)
T ss_pred             HHHHhchhhHHHHHHHHccCChhheecHHHHhh
Confidence            112334566788999999999999999999976

>PRK10345 hypothetical protein; Provisional

Probab=99.73  E-value=2.4e-17  Score=156.09  Aligned_cols=136  Identities=10%  Similarity=0.069  Sum_probs=101.3

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-----CCCceeeeeEEEecCCC-cc-e
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-----NHKNFVNLIGFCEEEEP-FT-R  376 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-----~H~niv~l~g~~~~~~~-~~-~  376 (592)
                      +.||+|+||.||. .-.++.. +||++.....     ...+++.+|+++++.+     +||||++++|++..... .. .
T Consensus         8 ~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~-----~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~   80 (210)
T PRK10345          8 SPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGD-----GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVY   80 (210)
T ss_pred             ceecCCCceEEEE-CCCCcCe-EEEEEecccc-----chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEE
Confidence            5799999999996 2223333 5777654321     1346789999999999     57999999999987631 12 2


Q ss_pred             EEEEee--CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHH-HHhhcCCCCeEeeCcCCCCeEEcC----CCceEEecC
Q 007711          377 MMVFEY--APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL-EHMHQLNPPIAHNYLNSSAVHLTE----DYAAKLSDL  449 (592)
Q Consensus       377 ~lv~Ey--~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl-~yLH~~~~~ivH~dLk~~NiLl~~----~~~~ki~Df  449 (592)
                      .+|+||  +++|+|.+++...   .++..  ..++.++..++ +|||+.+  |+||||||+|||++.    +..++|+||
T Consensus        81 ~~I~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L~~l~~yLh~~~--IvhrDlKp~NILl~~~~~~~~~~~LiDg  153 (210)
T PRK10345         81 DVIADFDGKPSITLTEFAEQC---RYEED--VAQLRQLLKKLKRYLLDNR--IVTMELKPQNILCQRISESEVIPVVCDN  153 (210)
T ss_pred             EEEecCCCCcchhHHHHHHcc---cccHh--HHHHHHHHHHHHHHHHHCC--EeecCCCHHHEEEeccCCCCCcEEEEEC
Confidence            378999  6689999999642   35554  34567777777 9999999  999999999999974    348999995


Q ss_pred             Ccch
Q 007711          450 SFWN  453 (592)
Q Consensus       450 Gla~  453 (592)
                      +.++
T Consensus       154 ~G~~  157 (210)
T PRK10345        154 IGES  157 (210)
T ss_pred             CCCc
Confidence            4443

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.71  E-value=4.4e-17  Score=159.33  Aligned_cols=227  Identities=19%  Similarity=0.323  Sum_probs=138.7

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCC----------CceeeeeEEEe-c
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH----------KNFVNLIGFCE-E  370 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H----------~niv~l~g~~~-~  370 (592)
                      .+.||.|+++.||.++.. .++++|||+.....  +......+++++|.-....+.+          -.++.-+.... .
T Consensus        17 ~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~--~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i~   94 (288)
T PF14531_consen   17 GRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPA--DASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRIP   94 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEEEESS--TTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEET
T ss_pred             ccccccCCceEEEEEEEccCCceEEEEEEeccc--ccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEEc
Confidence            467999999999999964 58999999987765  3334456778877766555433          12222122211 1


Q ss_pred             CCC-----------c---ceEEEEeeCCCCCchhhccc---cCC--CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCc
Q 007711          371 EEP-----------F---TRMMVFEYAPNGTLFEHIHI---KES--EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL  431 (592)
Q Consensus       371 ~~~-----------~---~~~lv~Ey~~~gsL~~~l~~---~~~--~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dL  431 (592)
                      +.+           .   ..+++|+-+ .++|.+++..   ...  ..+....++.+..|+.+.+++||+.+  +||+||
T Consensus        95 ~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~G--lVHgdi  171 (288)
T PF14531_consen   95 GKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYG--LVHGDI  171 (288)
T ss_dssp             TS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT--EEEST-
T ss_pred             CCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcc--eEeccc
Confidence            100           0   235677777 5688776542   111  12344567788899999999999999  999999


Q ss_pred             CCCCeEEcCCCceEEecCCcchhhhhhhh------hhcccccC--------CCCCCCCCCcchhhHHHHHHHHhCCCccc
Q 007711          432 NSSAVHLTEDYAAKLSDLSFWNEIAMAEM------AATSKKLS--------SAPSASLESNVYNFGVLLFEMVTGRLPYL  497 (592)
Q Consensus       432 k~~NiLl~~~~~~ki~DfGla~~~~~~~~------~~~~~~~~--------~~~~~s~ksDVwSfGvvl~El~tG~~P~~  497 (592)
                      ||+|++++.+|.++|+||+.....+....      ...+++..        ..-.++.+.|.|++|+++|.|++|+.||.
T Consensus       172 ~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~  251 (288)
T PF14531_consen  172 KPENFLLDQDGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFG  251 (288)
T ss_dssp             SGGGEEE-TTS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STC
T ss_pred             ceeeEEEcCCCCEEEcChHHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCC
Confidence            99999999999999999987654432111      11111111        11126788999999999999999999994


Q ss_pred             CCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCC
Q 007711          498 VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKR  551 (592)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~R  551 (592)
                      .....            ....    .....+. +.++.+..|+...++.+|.+|
T Consensus       252 ~~~~~------------~~~~----~~f~~C~-~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  252 LSSPE------------ADPE----WDFSRCR-DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             CCGGG------------STSG----GGGTTSS----HHHHHHHHHHT-SSGGGS
T ss_pred             CCCcc------------cccc----ccchhcC-CcCHHHHHHHHHHccCCcccC
Confidence            22100            0000    0122223 567789999999999999988

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.71  E-value=1.2e-16  Score=148.36  Aligned_cols=175  Identities=15%  Similarity=0.146  Sum_probs=123.5

Q ss_pred             hcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCch-hHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEEEE
Q 007711          303 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPK-NLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~-~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ...|++|+||+||.+.- ++.+++.+.+.....  +.. -....|.+|+++|++++ |+++++++++.      ..+++|
T Consensus         7 ~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~--~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~------~~~lvm   77 (218)
T PRK12274          7 NEPLKSDTFGRILLVRG-GERKFVRRDLSAAPW--WLRGVAWWLARREALALRQLDGLPRTPRLLHWD------GRHLDR   77 (218)
T ss_pred             ceeecCCCcceEEEeec-CCceeeecccccchh--hhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEc------CEEEEE
Confidence            35799999999997665 566666555432221  111 11235889999999995 58899998862      358999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCc-CCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL-NSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dL-k~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      ||+++.+|...+..         ....+..++++++.++|+.+  |+|||| ||.|||++.++.++|+|||++.......
T Consensus        78 eyI~G~~L~~~~~~---------~~~~~~~qi~~~L~~lH~~G--IvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~  146 (218)
T PRK12274         78 SYLAGAAMYQRPPR---------GDLAYFRAARRLLQQLHRCG--VAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRA  146 (218)
T ss_pred             eeecCccHHhhhhh---------hhHHHHHHHHHHHHHHHHCc--CccCCCCCcceEEEcCCCCEEEEECCCceecCCcc
Confidence            99999888654321         12346788999999999999  999999 7999999999999999999998543211


Q ss_pred             h-----hh------------cccccCCCCC-------CC-CCCcchhhHHHHHHHHhCCCcccC
Q 007711          460 M-----AA------------TSKKLSSAPS-------AS-LESNVYNFGVLLFEMVTGRLPYLV  498 (592)
Q Consensus       460 ~-----~~------------~~~~~~~~~~-------~s-~ksDVwSfGvvl~El~tG~~P~~~  498 (592)
                      .     ..            .++++. .|.       .+ ...+.++-|.-+|.++||+.+...
T Consensus       147 ~~~r~L~~rDl~~llk~~~~y~~~~l-~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~  209 (218)
T PRK12274        147 RWMRLLAREDLRHLLKHKRMYCPAAL-TPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWE  209 (218)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCC-CHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccc
Confidence            0     00            011111 111       11 235899999999999999988743

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.70  E-value=1.1e-16  Score=153.58  Aligned_cols=139  Identities=15%  Similarity=0.189  Sum_probs=111.0

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCC---chhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDW---PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~---~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.||+|++|.||+|.+ .|..+++|..........   .......+.+|++++..++|+++.....++....  ..+++|
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~--~~~lv~   78 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPE--NFIIVM   78 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCC--CCEEEE
Confidence            4689999999999998 667788887543322110   0112346788999999999999887777765555  458999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ||+++++|.+++...     .+ .+..++.+++.++.++|+.+  ++|||++|.|||++ ++.++|+|||.++.
T Consensus        79 e~~~G~~L~~~~~~~-----~~-~~~~i~~~i~~~l~~lH~~~--i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         79 EYIEGEPLKDLINSN-----GM-EELELSREIGRLVGKLHSAG--IIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             EEeCCcCHHHHHHhc-----cH-HHHHHHHHHHHHHHHHHhCC--cccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            999999999887532     22 78899999999999999998  99999999999999 78899999998764

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.69  E-value=1.6e-16  Score=150.96  Aligned_cols=135  Identities=16%  Similarity=0.218  Sum_probs=104.6

Q ss_pred             ccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCc---hhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          305 VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP---KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       305 ~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~---~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .||+|+||.||+|.+ +|..+++|...........   ......+.+|++++..++|+++.....++....  ..++|||
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~--~~~lv~e   77 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPD--NKTIVME   77 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCEEEEE
Confidence            489999999999996 5678888875533221110   112356788999999999887655444444444  4589999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      |+++++|.+++....        . .++.+++.++++||+.+  ++|||++|.||+++ ++.+++.|||+++.
T Consensus        78 ~~~g~~l~~~~~~~~--------~-~~~~~i~~~l~~lH~~g--i~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        78 YIEGKPLKDVIEEGN--------D-ELLREIGRLVGKLHKAG--IVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             EECCccHHHHHhhcH--------H-HHHHHHHHHHHHHHHCC--eecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            999999988774221        0 78999999999999998  99999999999999 88999999998765

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.68  E-value=1.6e-16  Score=173.54  Aligned_cols=137  Identities=15%  Similarity=0.155  Sum_probs=108.1

Q ss_pred             hcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCC---chhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          303 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDW---PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~---~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.||+|+||.||+|.+.+.. +++|+.........   .....+.+.+|++++.+++|++++....++....  ..++|
T Consensus       338 ~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~--~~~lv  414 (535)
T PRK09605        338 DHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPE--EKTIV  414 (535)
T ss_pred             cceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCC--CCEEE
Confidence            478999999999999985543 44443322211110   1122456889999999999999988877777655  45899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      |||+++++|.+++.          ....++.++++++.|||+.+  ++|||+||+|||+ +++.++|+|||+++..
T Consensus       415 ~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~g--iiHrDlkp~NILl-~~~~~~liDFGla~~~  477 (535)
T PRK09605        415 MEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKAG--IVHGDLTTSNFIV-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             EEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhCC--CccCCCChHHEEE-ECCcEEEEeCcccccC
Confidence            99999999988774          35678999999999999998  9999999999999 6789999999998764

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.68  E-value=2.4e-16  Score=149.53  Aligned_cols=139  Identities=14%  Similarity=0.163  Sum_probs=105.9

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccC--C---------------CchhHHHHHHHHHHHHhcCCCCc--ee
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK--D---------------WPKNLEVQFRKKIDTLSKVNHKN--FV  362 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~--~---------------~~~~~~~~f~~e~~~l~~l~H~n--iv  362 (592)
                      +.+.||+|+||.||++..++|..+|||++......  .               ........+..|...+.++.|++  +.
T Consensus        19 ~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~v~   98 (198)
T cd05144          19 LGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFPVP   98 (198)
T ss_pred             cCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCCCC
Confidence            45789999999999999888999999986543210  0               00011234677888999988874  44


Q ss_pred             eeeEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC
Q 007711          363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY  442 (592)
Q Consensus       363 ~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~  442 (592)
                      ..++.    .  ..++||||+++++|......        ....+++.+++.++.++|+.+  ++||||||+||++++++
T Consensus        99 ~~~~~----~--~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh~~g--i~H~Dl~p~Nill~~~~  162 (198)
T cd05144          99 KPIDW----N--RHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAYKHG--IIHGDLSEFNILVDDDE  162 (198)
T ss_pred             ceeec----C--CceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHHHCC--CCcCCCCcccEEEcCCC
Confidence            44432    2  34899999999998765421        234578889999999999988  99999999999999999


Q ss_pred             ceEEecCCcchhhh
Q 007711          443 AAKLSDLSFWNEIA  456 (592)
Q Consensus       443 ~~ki~DfGla~~~~  456 (592)
                      .++|+|||++....
T Consensus       163 ~~~liDfg~~~~~~  176 (198)
T cd05144         163 KIYIIDWPQMVSTD  176 (198)
T ss_pred             cEEEEECCccccCC
Confidence            99999999986554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>smart00090 RIO RIO-like kinase

Probab=99.67  E-value=4.8e-16  Score=150.86  Aligned_cols=145  Identities=14%  Similarity=0.117  Sum_probs=107.9

Q ss_pred             hhcccCcCCCeEEEEEE--eCCCcEEEEEEeeecccCC-------------------CchhHHHHHHHHHHHHhcCCCCc
Q 007711          302 FSNVIGSSPIGTVYKGT--LSNGVEIAVASVSVASAKD-------------------WPKNLEVQFRKKIDTLSKVNHKN  360 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~--~~~~~~vavk~~~~~~~~~-------------------~~~~~~~~f~~e~~~l~~l~H~n  360 (592)
                      +.+.||+|+||.||+|.  ..+|..||+|.+.......                   ........+..|++.+.++.|..
T Consensus        32 i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~~~  111 (237)
T smart00090       32 IGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYEAG  111 (237)
T ss_pred             hCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45789999999999998  5689999999987543110                   00012234678999999997633


Q ss_pred             --eeeeeEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE
Q 007711          361 --FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL  438 (592)
Q Consensus       361 --iv~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl  438 (592)
                        +.+.+++   .   ..++||||+++++|......  ...+.......++.+++.+++|||+.+ .++||||||+||++
T Consensus       112 i~~p~~~~~---~---~~~lV~E~~~g~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~g-~iiH~Dikp~NIli  182 (237)
T smart00090      112 VPVPKPIAW---R---RNVLVMEFIGGDGLPAPRLK--DVEPEEEEEFELYDDILEEMRKLYKEG-ELVHGDLSEYNILV  182 (237)
T ss_pred             CCCCeeeEe---c---CceEEEEEecCCcccccccc--cCCcchHHHHHHHHHHHHHHHHHHhcC-CEEeCCCChhhEEE
Confidence              3444443   2   23799999999888765421  223455566789999999999999876 49999999999999


Q ss_pred             cCCCceEEecCCcchhhh
Q 007711          439 TEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       439 ~~~~~~ki~DfGla~~~~  456 (592)
                      + ++.++|+|||.+....
T Consensus       183 ~-~~~i~LiDFg~a~~~~  199 (237)
T smart00090      183 H-DGKVVIIDVSQSVELD  199 (237)
T ss_pred             E-CCCEEEEEChhhhccC
Confidence            9 8899999999877543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.67  E-value=2.3e-17  Score=179.29  Aligned_cols=240  Identities=18%  Similarity=0.260  Sum_probs=159.7

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.+.+|++.|=+|.+|+.++|. |+||++.+.... ..-....+-.+|++ ...++|||.+++.-+-...+  ..|+|=+
T Consensus        27 ~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~-~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~k--AAylvRq  101 (1431)
T KOG1240|consen   27 YVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPT-ISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDK--AAYLVRQ  101 (1431)
T ss_pred             eecccCchhhhhhhhccCCCce-EEEEEEeccCCC-CCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhH--HHHHHHH
Confidence            4567999999999999988886 888887654422 12122222333444 44558999998765544444  4578888


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh---
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~---  458 (592)
                      |..+ +|+|.+.-+  .-+......=||.|+..|+.-+|..+  |+|||||.+||||..=..+.|+||---+...-+   
T Consensus       102 yvkh-nLyDRlSTR--PFL~~iEKkWiaFQLL~al~qcH~~g--VcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDN  176 (1431)
T KOG1240|consen  102 YVKH-NLYDRLSTR--PFLVLIEKKWIAFQLLKALSQCHKLG--VCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDN  176 (1431)
T ss_pred             HHhh-hhhhhhccc--hHHHHHHHHHHHHHHHHHHHHHHHcC--ccccccccceEEEeeechhhhhcccccCCccCCCCC
Confidence            8865 899988633  23445556669999999999999999  999999999999998778899999654432110   


Q ss_pred             -------------hhhhcccccC-----------CCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcC
Q 007711          459 -------------EMAATSKKLS-----------SAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG  513 (592)
Q Consensus       459 -------------~~~~~~~~~~-----------~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~  513 (592)
                                   ..++-+||.+           .+|..+.+.||||.|||+.||++ |++||.     +.+... +.++
T Consensus       177 Padf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~-----LSQL~a-Yr~~  250 (1431)
T KOG1240|consen  177 PADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFT-----LSQLLA-YRSG  250 (1431)
T ss_pred             cccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCccc-----HHHHHh-Hhcc
Confidence                         1122222211           12336788999999999999999 899983     222111 1111


Q ss_pred             CCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      .....+..   +....+   ..+++++..|++.||.+|.++++.++.-++
T Consensus       251 ~~~~~e~~---Le~Ied---~~~Rnlil~Mi~rdPs~RlSAedyL~~yrG  294 (1431)
T KOG1240|consen  251 NADDPEQL---LEKIED---VSLRNLILSMIQRDPSKRLSAEDYLQKYRG  294 (1431)
T ss_pred             CccCHHHH---HHhCcC---ccHHHHHHHHHccCchhccCHHHHHHhhhc
Confidence            00000000   000111   257899999999999999999999887443

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.66  E-value=1.7e-16  Score=155.28  Aligned_cols=191  Identities=19%  Similarity=0.238  Sum_probs=128.9

Q ss_pred             CCCceeeeeEEEecCC-------------------------CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHH
Q 007711          357 NHKNFVNLIGFCEEEE-------------------------PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMG  411 (592)
Q Consensus       357 ~H~niv~l~g~~~~~~-------------------------~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~  411 (592)
                      +|||||++.+++.+.-                         +...|+||.-.+. +|.+++..   +..+.....-|..|
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~---~~~s~r~~~~~laQ  349 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWT---RHRSYRTGRVILAQ  349 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhc---CCCchHHHHHHHHH
Confidence            5999999998776531                         1235677776644 77777753   33455566678889


Q ss_pred             HHHHHHHhhcCCCCeEeeCcCCCCeEEc--CCC--ceEEecCCcchhhhhhhh--hhcc-------cccCCCCCC-----
Q 007711          412 MAYCLEHMHQLNPPIAHNYLNSSAVHLT--EDY--AAKLSDLSFWNEIAMAEM--AATS-------KKLSSAPSA-----  473 (592)
Q Consensus       412 ia~gl~yLH~~~~~ivH~dLk~~NiLl~--~~~--~~ki~DfGla~~~~~~~~--~~~~-------~~~~~~~~~-----  473 (592)
                      +.+|+.|||.++  +.|||+|+.|||+.  +|.  ...|+|||.+---.....  -+.+       ....++||+     
T Consensus       350 lLEav~hL~~hg--vAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~P  427 (598)
T KOG4158|consen  350 LLEAVTHLHKHG--VAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVP  427 (598)
T ss_pred             HHHHHHHHHHcc--chhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCC
Confidence            999999999999  99999999999984  454  457899997543221000  0000       011233332     


Q ss_pred             -------CCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccc
Q 007711          474 -------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRA  546 (592)
Q Consensus       474 -------s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~  546 (592)
                             -.|+|.|+.|-+.||+++...||...+.-..+.        ..   .-...++..++.++.-+.+++...++.
T Consensus       428 Gp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~--------r~---Yqe~qLPalp~~vpp~~rqlV~~lL~r  496 (598)
T KOG4158|consen  428 GPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDT--------RT---YQESQLPALPSRVPPVARQLVFDLLKR  496 (598)
T ss_pred             CCceeeccchhhhhhhhhhHHHHhccCCcccccchheech--------hh---hhhhhCCCCcccCChHHHHHHHHHhcC
Confidence                   357999999999999999999996533211110        11   112234445666777899999999999


Q ss_pred             CCCCCCCHHHHHHHHHhh
Q 007711          547 DPEKRPTMRDIAAILREI  564 (592)
Q Consensus       547 dP~~RPs~~ev~~~L~~i  564 (592)
                      ||.+|++..-....|.--
T Consensus       497 ~pskRvsp~iAANvl~Ls  514 (598)
T KOG4158|consen  497 DPSKRVSPNIAANVLNLS  514 (598)
T ss_pred             CccccCCccHHHhHHHHH
Confidence            999999987766666543

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.64  E-value=1.5e-16  Score=165.16  Aligned_cols=223  Identities=22%  Similarity=0.275  Sum_probs=161.3

Q ss_pred             ccCcCCCeEEEEEE----eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEEE
Q 007711          305 VIGSSPIGTVYKGT----LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       305 ~lG~G~~g~Vy~g~----~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+|+|+||.|+..+    .+.|..++.|.++.........   .....|..++..++ ||.+|++.-.+..+.  ..+++
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~---~~t~~er~il~~~~~~~f~v~lhyafqt~~--kl~l~   75 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDR---THTKQERIILAFVHNTPFLVKLHYAFQTDG--KLYLI   75 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccc---cccccHHHHHhhccCCCceeeeeeeecccc--chhHh
Confidence            37999999998654    2346677777766544333111   14456777888886 999999987776655  67899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      .+|..+|+|...+.  ....++..........++-+++++|+.+  ++|||+|++||+++.+|.+|+.|||+++..-...
T Consensus        76 ld~~rgg~lft~l~--~~~~f~~~~~~~~~aelaLald~lh~l~--iiyrd~k~enilld~~Ghi~~tdfglske~v~~~  151 (612)
T KOG0603|consen   76 LDFLRGGDLFTRLS--KEVMFDELDVAFYLAELALALDHLHKLG--IAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEK  151 (612)
T ss_pred             hhhcccchhhhccc--cCCchHHHHHHHHHHHHHHHHhhcchhH--HHHhcccccceeecccCccccCCchhhhHhHhhh
Confidence            99999999987765  3344555555666778888999999999  9999999999999999999999999999875444


Q ss_pred             hhhcccccCCCCC----CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHH
Q 007711          460 MAATSKKLSSAPS----ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET  535 (592)
Q Consensus       460 ~~~~~~~~~~~~~----~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  535 (592)
                      .. .....+++|+    ....+|.|||||+++||+||..||..      +....++...           ..++.+....
T Consensus       152 ~~-cgt~eymApEI~~gh~~a~D~ws~gvl~felltg~~pf~~------~~~~~Il~~~-----------~~~p~~l~~~  213 (612)
T KOG0603|consen  152 IA-CGTYEYRAPEIINGHLSAADWWSFGVLAFELLTGTLPFGG------DTMKRILKAE-----------LEMPRELSAE  213 (612)
T ss_pred             hc-ccchhhhhhHhhhccCCcccchhhhhhHHHHhhCCCCCch------HHHHHHhhhc-----------cCCchhhhHH
Confidence            33 2233455555    35689999999999999999999943      2222222211           1224445556


Q ss_pred             HHHHHHHhcccCCCCCCCH
Q 007711          536 LGELIKSCVRADPEKRPTM  554 (592)
Q Consensus       536 l~~l~~~Cl~~dP~~RPs~  554 (592)
                      +.+++......+|..|.-.
T Consensus       214 a~~~~~~l~~r~p~nrLg~  232 (612)
T KOG0603|consen  214 ARSLFRQLFKRNPENRLGA  232 (612)
T ss_pred             HHHHHHHHHhhCHHHHhcc
Confidence            7777777777888888654

>PLN03150 hypothetical protein; Provisional

Probab=99.58  E-value=9.1e-15  Score=161.47  Aligned_cols=90  Identities=28%  Similarity=0.459  Sum_probs=83.3

Q ss_pred             CCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCEEECC
Q 007711           26 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVD  105 (592)
Q Consensus        26 ~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~  105 (592)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|+|+|.+|..++.+++|+.|+|++|+|+|.+|..++++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccc
Q 007711          106 EGQLSSAAKK  115 (592)
Q Consensus       106 ~n~l~g~~p~  115 (592)
                      +|+|+|.+|.
T Consensus       499 ~N~l~g~iP~  508 (623)
T PLN03150        499 GNSLSGRVPA  508 (623)
T ss_pred             CCcccccCCh
Confidence            9999999884

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.58  E-value=1e-14  Score=136.95  Aligned_cols=141  Identities=13%  Similarity=0.124  Sum_probs=97.0

Q ss_pred             hcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhH-------------------HHHHHHHHHHHhcCCCCc--e
Q 007711          303 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNL-------------------EVQFRKKIDTLSKVNHKN--F  361 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~-------------------~~~f~~e~~~l~~l~H~n--i  361 (592)
                      .+.||+|+||.||+|...++..||||+.............                   ......|.+.+.++.+..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            3579999999999999888999999987643221100000                   001134555566654432  4


Q ss_pred             eeeeEEEecCCCcceEEEEeeCCCCCchhh-ccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEc
Q 007711          362 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEH-IHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLT  439 (592)
Q Consensus       362 v~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~-l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~  439 (592)
                      .+.+++.      ..++||||++++.+... +....   .. ....+++.+++.++.++|. .+  |+||||||+||+++
T Consensus        82 ~~~~~~~------~~~lv~e~~~g~~~~~~~l~~~~---~~-~~~~~~~~~~~~~l~~lh~~~~--ivH~Dl~p~Nili~  149 (187)
T cd05119          82 PKPIDLN------RHVLVMEFIGGDGIPAPRLKDVR---LL-EDPEELYDQILELMRKLYREAG--LVHGDLSEYNILVD  149 (187)
T ss_pred             CceEecC------CCEEEEEEeCCCCccChhhhhhh---hc-ccHHHHHHHHHHHHHHHhhccC--cCcCCCChhhEEEE
Confidence            4444431      34899999999654321 11100   01 4567899999999999998 88  99999999999999


Q ss_pred             CCCceEEecCCcchhhh
Q 007711          440 EDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       440 ~~~~~ki~DfGla~~~~  456 (592)
                       ++.++++|||.+....
T Consensus       150 -~~~~~liDfg~a~~~~  165 (187)
T cd05119         150 -DGKVYIIDVPQAVEID  165 (187)
T ss_pred             -CCcEEEEECccccccc
Confidence             8999999999987553

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=1.7e-14  Score=160.35  Aligned_cols=234  Identities=16%  Similarity=0.266  Sum_probs=152.0

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC---CCceeeeeEEEecCCCcceEE
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN---HKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~---H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.||+|+||.||+|...+|+.||+|+=+....=+        |.=-.+++.+|+   -+-|..+..++.-.+  ..+|
T Consensus       702 I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WE--------fYI~~q~~~RLk~~~~~~~~~~~~a~~~~~--~S~l  771 (974)
T KOG1166|consen  702 ISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWE--------FYICLQVMERLKPQMLPSIMHISSAHVFQN--ASVL  771 (974)
T ss_pred             EEeeeccccceEEEEeecCCCcEEEEEeecCCCcee--------eeehHHHHHhhchhhhcchHHHHHHHccCC--ccee
Confidence            347899999999999998889999999765433211        111122333333   122333333333333  4589


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc-------CCCceEEecCCc
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-------EDYAAKLSDLSF  451 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~-------~~~~~ki~DfGl  451 (592)
                      |+||.+.|+|.+++.  ..+.++|.....++.++++-+++||.++  |||+||||.|+||.       ++..++|.|||.
T Consensus       772 v~ey~~~Gtlld~~N--~~~~m~e~lv~~~~~qml~ive~lH~~~--IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~  847 (974)
T KOG1166|consen  772 VSEYSPYGTLLDLIN--TNKVMDEYLVMFFSCQMLRIVEHLHAMG--IIHGDIKPDNFLLRREICADSDSKGLYLIDFGR  847 (974)
T ss_pred             eeeccccccHHHhhc--cCCCCCchhhhHHHHHHHHHHHHHHhcc--eecccCCcceeEeecccCCCCcccceEEEeccc
Confidence            999999999999986  5677899999999999999999999999  99999999999994       345689999998


Q ss_pred             chhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          452 WNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       452 a~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      +-.+..-..           .-.+.+...+...+.+.|-|.+.-+++-|+.|+.-=             ...+   ....
T Consensus       848 siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~q-------------~~~g---~~~~  911 (974)
T KOG1166|consen  848 SIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYME-------------VKNG---SSWM  911 (974)
T ss_pred             ceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHH-------------hcCC---ccee
Confidence            764421110           001122333445688999999999999999886421             1111   1111


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ++..+..+...  +-..++....|..|-..=|...++...|++++..
T Consensus       912 ~~~~~~Ry~~~--~~W~~~F~~lLN~~~~~~p~l~~lr~~~~~~~~~  956 (974)
T KOG1166|consen  912 VKTNFPRYWKR--DMWNKFFDLLLNPDCDTLPNLQELRTELEEVLAE  956 (974)
T ss_pred             ccccchhhhhH--HHHHHHHHHHhCcCcccchhHHHHHHHHHHHHHH
Confidence            12212211111  1122344444555555558888888888887644

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.54  E-value=7.1e-14  Score=125.85  Aligned_cols=133  Identities=14%  Similarity=0.129  Sum_probs=108.6

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCC--CceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH--KNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H--~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|.++.||++...+ ..+++|.......       ...+.+|+..+..++|  .++.+++++....+  ..++++|
T Consensus         4 ~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~-------~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~--~~~~v~e   73 (155)
T cd05120           4 KLLKGGLTNRVYLLGTKD-EDYVLKINPSREK-------GADREREVAILQLLARKGLPVPKVLASGESDG--WSYLLME   73 (155)
T ss_pred             eecccccccceEEEEecC-CeEEEEecCCCCc-------hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--ccEEEEE
Confidence            569999999999999855 6788887643221       3568899999999976  58889888877655  5699999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCC-CCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN-PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~-~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      |++++.+..+         ++.....++.+++.+++++|... ..++|+|++|+||++++++.+++.|||.++..
T Consensus        74 ~~~g~~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~  139 (155)
T cd05120          74 WIEGETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG  139 (155)
T ss_pred             ecCCeecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC
Confidence            9998777543         55677788999999999999752 34999999999999999899999999987643

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.52  E-value=1.1e-13  Score=134.61  Aligned_cols=143  Identities=13%  Similarity=0.090  Sum_probs=106.4

Q ss_pred             cccC-cCCCeEEEEEEeCCCcEEEEEEeeeccc------CC--CchhHHHHHHHHHHHHhcCCCCce--eeeeEEEecCC
Q 007711          304 NVIG-SSPIGTVYKGTLSNGVEIAVASVSVASA------KD--WPKNLEVQFRKKIDTLSKVNHKNF--VNLIGFCEEEE  372 (592)
Q Consensus       304 ~~lG-~G~~g~Vy~g~~~~~~~vavk~~~~~~~------~~--~~~~~~~~f~~e~~~l~~l~H~ni--v~l~g~~~~~~  372 (592)
                      ..|| .|+.|+||+.... +..++||.......      ..  +.......+.+|++++..++|+++  ++.+++.....
T Consensus        37 ~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~  115 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRH  115 (239)
T ss_pred             ceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeec
Confidence            5687 8999999998874 67788887753211      11  111234568889999999998875  67777754432


Q ss_pred             Cc--ceEEEEeeCCC-CCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecC
Q 007711          373 PF--TRMMVFEYAPN-GTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  449 (592)
Q Consensus       373 ~~--~~~lv~Ey~~~-gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~Df  449 (592)
                      ..  ..++|+||+++ .+|.+++..   ..++..    .+.+++.++.+||+.+  |+||||||.|||++.++.++|+||
T Consensus       116 ~~~~~~~lV~e~l~G~~~L~~~l~~---~~l~~~----~~~~i~~~l~~lH~~G--I~HrDlkp~NILv~~~~~v~LIDf  186 (239)
T PRK01723        116 GLFYRADILIERIEGARDLVALLQE---APLSEE----QWQAIGQLIARFHDAG--VYHADLNAHNILLDPDGKFWLIDF  186 (239)
T ss_pred             CcceeeeEEEEecCCCCCHHHHHhc---CCCCHH----HHHHHHHHHHHHHHCC--CCCCCCCchhEEEcCCCCEEEEEC
Confidence            21  23599999997 688888753   234433    3567899999999999  999999999999999899999999


Q ss_pred             Ccchhhh
Q 007711          450 SFWNEIA  456 (592)
Q Consensus       450 Gla~~~~  456 (592)
                      |.++...
T Consensus       187 g~~~~~~  193 (239)
T PRK01723        187 DRGELRT  193 (239)
T ss_pred             CCcccCC
Confidence            9887643

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.47  E-value=3.2e-13  Score=142.73  Aligned_cols=147  Identities=18%  Similarity=0.227  Sum_probs=101.3

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCc-----------------------------hh------HHHHHHH
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP-----------------------------KN------LEVQFRK  348 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~-----------------------------~~------~~~~f~~  348 (592)
                      +.||.|++|.||+|++++|+.||||+......+...                             ..      .+-+|..
T Consensus       123 ~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~  202 (437)
T TIGR01982       123 KPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRR  202 (437)
T ss_pred             cceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHHH
Confidence            579999999999999999999999997543211100                             00      0123556


Q ss_pred             HHHHHhcC----CCCceeeeeEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHH-HHHHhhcCC
Q 007711          349 KIDTLSKV----NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAY-CLEHMHQLN  423 (592)
Q Consensus       349 e~~~l~~l----~H~niv~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~-gl~yLH~~~  423 (592)
                      |++.+.++    +|.+-+.+-.++.+-.. ..+|||||+++++|.+....... ..   .+.+++..++. .+..+|..+
T Consensus       203 Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~-~~vLvmE~i~G~~L~~~~~~~~~-~~---~~~~ia~~~~~~~l~ql~~~g  277 (437)
T TIGR01982       203 EAANASELGENFKNDPGVYVPEVYWDRTS-ERVLTMEWIDGIPLSDIAALDEA-GL---DRKALAENLARSFLNQVLRDG  277 (437)
T ss_pred             HHHHHHHHHHhcCCCCCEEeCCEehhhcC-CceEEEEeECCcccccHHHHHhc-CC---CHHHHHHHHHHHHHHHHHhCC
Confidence            66655555    23333443333332111 35899999999999887643211 12   24456776666 367778888


Q ss_pred             CCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          424 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       424 ~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                        ++|+|++|.||++++++.+++.|||++..+..
T Consensus       278 --~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       278 --FFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             --ceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence              99999999999999999999999999887653

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.44  E-value=8.7e-14  Score=163.63  Aligned_cols=112  Identities=28%  Similarity=0.445  Sum_probs=80.9

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|.+.|.+|..+ .+++|+.|+|++|+++|.+|..+.++++|+.|+|++|++.|.+|..+..+++|+.|+|++
T Consensus       454 L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  532 (968)
T PLN00113        454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH  532 (968)
T ss_pred             CcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCC
Confidence            5667777777777776554 346677777777777777777777777777777777777777777777777777777777


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      |.++|.+|..+..+++|+.|+|++|+++|.+|.
T Consensus       533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             CcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence            777777777777777777777777777777664

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.38  E-value=4.3e-13  Score=128.82  Aligned_cols=192  Identities=20%  Similarity=0.290  Sum_probs=126.1

Q ss_pred             HHHhcCCCCceeeeeEEEecCCC---cceEEEEeeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 007711          351 DTLSKVNHKNFVNLIGFCEEEEP---FTRMMVFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPP  425 (592)
Q Consensus       351 ~~l~~l~H~niv~l~g~~~~~~~---~~~~lv~Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~  425 (592)
                      +-+-.+.|.|||+++.|+.+.+.   ....++.|||..|++..+|+..  ....+......+++.||..||.|||++.|+
T Consensus       119 dnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~Pp  198 (458)
T KOG1266|consen  119 DNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPP  198 (458)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCc
Confidence            33445579999999999876531   2467899999999999999853  334455555678999999999999999999


Q ss_pred             eEeeCcCCCCeEEcCCCceEEecCCcchhhh---hhhhhh----cccccCCCCC------CCCCCcchhhHHHHHHHHhC
Q 007711          426 IAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA---MAEMAA----TSKKLSSAPS------ASLESNVYNFGVLLFEMVTG  492 (592)
Q Consensus       426 ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~---~~~~~~----~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG  492 (592)
                      |+|+++..+-|.+..++-+||+----.....   ......    ++-.++.+|+      .+..+|||+||+..+||..+
T Consensus       199 iihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemail  278 (458)
T KOG1266|consen  199 IIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAIL  278 (458)
T ss_pred             cccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHh
Confidence            9999999999999999999986321111100   000011    1112233333      46679999999999999886


Q ss_pred             CCc-ccCCCC-ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          493 RLP-YLVDNG-SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       493 ~~P-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..- -..+.. ..++-.....      ...-++           .=++++..|++-+|..||+|++++.
T Consensus       279 Eiq~tnseS~~~~ee~ia~~i------~~len~-----------lqr~~i~kcl~~eP~~rp~ar~llf  330 (458)
T KOG1266|consen  279 EIQSTNSESKVEVEENIANVI------IGLENG-----------LQRGSITKCLEGEPNGRPDARLLLF  330 (458)
T ss_pred             eeccCCCcceeehhhhhhhhe------eeccCc-----------cccCcCcccccCCCCCCcchhhhhc
Confidence            543 211111 0111111111      111111           1125788999999999999998753

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=1.1e-13  Score=141.52  Aligned_cols=162  Identities=18%  Similarity=0.281  Sum_probs=115.5

Q ss_pred             ceEEEEeeCCCCCchhhccc-cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcch
Q 007711          375 TRMMVFEYAPNGTLFEHIHI-KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  453 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~  453 (592)
                      +.++.|++|...+|.+|+.. ......+|...+.++.+++.|+.|   ++  .+|+|+||.||....+..+||.|||+..
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k~--~ihrdlkp~nif~~~d~q~kIgDFgl~t  404 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---KG--LIHRDLKPSNIFFSDDDQLKIGDFGLVT  404 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---cc--chhhhccccccccccchhhhhhhhhhee
Confidence            36799999999999999963 345567888999999999999999   66  9999999999999999999999999977


Q ss_pred             hhhhhh---------hhhcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCC
Q 007711          454 EIAMAE---------MAATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL  517 (592)
Q Consensus       454 ~~~~~~---------~~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~  517 (592)
                      ......         .....+..|+.|+      |+.|+||||+|++|+|+++ =..+++...     ...+ +++    
T Consensus       405 s~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er~~-----t~~d-~r~----  474 (516)
T KOG1033|consen  405 SQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFERIA-----TLTD-IRD----  474 (516)
T ss_pred             ecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHHHH-----hhhh-hhc----
Confidence            654322         1222335666665      8999999999999999998 334431000     0000 011    


Q ss_pred             ccccCCC-CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 007711          518 QQFVDPT-LSSFDEEQLETLGELIKSCVRADPEKRPTMRDI  557 (592)
Q Consensus       518 ~~~~~~~-~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev  557 (592)
                       ..++|. +.+++     .-+.++.+.+...|.+||++.++
T Consensus       475 -g~ip~~~~~d~p-----~e~~ll~~lls~~p~~RP~~~~~  509 (516)
T KOG1033|consen  475 -GIIPPEFLQDYP-----EEYTLLQQLLSPSPEERPSAIEV  509 (516)
T ss_pred             -CCCChHHhhcCc-----HHHHHHHHhcCCCcccCchHHHH
Confidence             111211 11222     23478899999999999955443

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.31  E-value=4.9e-12  Score=138.36  Aligned_cols=128  Identities=20%  Similarity=0.286  Sum_probs=94.2

Q ss_pred             HHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh------------------hhcccccCCCCC--
Q 007711          413 AYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM------------------AATSKKLSSAPS--  472 (592)
Q Consensus       413 a~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~------------------~~~~~~~~~~~~--  472 (592)
                      +.+++|||+.+  |+|||+||.|.+|..-|.+|++|||+.+..-+...                  .......|.+|+  
T Consensus       153 vla~Eylh~yg--ivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVi  230 (1205)
T KOG0606|consen  153 VLAVEYLHSYG--IVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVI  230 (1205)
T ss_pred             hHHhHhhccCC--eecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhh
Confidence            77899999999  99999999999999999999999999876532210                  001123344554  


Q ss_pred             ----CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCC
Q 007711          473 ----ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADP  548 (592)
Q Consensus       473 ----~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP  548 (592)
                          |...+|+|++|+|+||.+.|+.||.+  ...++.+..++.+...+.+-        ++....++.+++.+-++.+|
T Consensus       231 lrqgygkpvdwwamGiIlyeFLVgcvpffG--dtpeelfg~visd~i~wpE~--------dea~p~Ea~dli~~LL~qnp  300 (1205)
T KOG0606|consen  231 LRQGYGKPVDWWAMGIILYEFLVGCVPFFG--DTPEELFGQVISDDIEWPEE--------DEALPPEAQDLIEQLLRQNP  300 (1205)
T ss_pred             hhhccCCCccHHHHHHHHHHHheeeeeccC--CCHHHHHhhhhhhhcccccc--------CcCCCHHHHHHHHHHHHhCh
Confidence                57789999999999999999999953  33555555555543322221        22233568899999999999


Q ss_pred             CCCC
Q 007711          549 EKRP  552 (592)
Q Consensus       549 ~~RP  552 (592)
                      .+|-
T Consensus       301 ~~Rl  304 (1205)
T KOG0606|consen  301 LCRL  304 (1205)
T ss_pred             Hhhc
Confidence            9995

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=1.1e-12  Score=142.95  Aligned_cols=242  Identities=18%  Similarity=0.252  Sum_probs=161.3

Q ss_pred             hcccCcCCCeEEEEEEeCCCc--EEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEEE
Q 007711          303 SNVIGSSPIGTVYKGTLSNGV--EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~~~--~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.||+|+|+.|-........  .+++|.+.... +.  .........|..+-..+. |.|++++++...+.+  ..+++
T Consensus        25 ~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~-~~--~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~--~~~~~   99 (601)
T KOG0590|consen   25 SRSIGKGSFSSSALASNSRDPESSSATKPISIPP-KS--EDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPR--SYLLS   99 (601)
T ss_pred             cccccccccchhhhhhhcCCCcceeeccCCCCCC-Cc--cchhhhcCccccccccccccccccccCCccCCCc--ccccc
Confidence            455999999999887754333  44444443322 11  223334455777777776 999999999888777  67899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhh-cCCCCeEeeCcCCCCeEEcCCC-ceEEecCCcchhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAM  457 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH-~~~~~ivH~dLk~~NiLl~~~~-~~ki~DfGla~~~~~  457 (592)
                      .||..+|++.+.+........+......+..++..++.|+| .++  +.|+|+||+|.+++..+ ..|++|||+|..+..
T Consensus       100 ~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~--~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~  177 (601)
T KOG0590|consen  100 LSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENG--VTHRDIKPSNSLLDESGSALKIADFGLATAYRN  177 (601)
T ss_pred             cCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccc--cccCCCCCccchhccCCCcccCCCchhhccccc
Confidence            99999999998883222223444556667889999999999 777  99999999999999999 999999999987754


Q ss_pred             -hhhh-----hcc-cccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          458 -AEMA-----ATS-KKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       458 -~~~~-----~~~-~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                       ....     ... ...+.+||       .....|+||.|+++.-+++|..|+............. ... .      ..
T Consensus       178 ~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~-~~~-~------~~  249 (601)
T KOG0590|consen  178 KNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSW-KSN-K------GR  249 (601)
T ss_pred             cCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccccceee-ccc-c------cc
Confidence             1110     001 11223333       3556899999999999999999986433222111000 000 0      00


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..............++..+++..+|..|.+.+++..
T Consensus       250 ~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~~  285 (601)
T KOG0590|consen  250 FTQLPWNSISDQAHDLLHKILKENPSNRLSIEELKL  285 (601)
T ss_pred             cccCccccCChhhhhcccccccCCchhccccccccc
Confidence            000111122235678888899899999999887753

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.23  E-value=9.5e-13  Score=115.09  Aligned_cols=109  Identities=22%  Similarity=0.380  Sum_probs=87.8

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      ++.|-|++|+|+ .+|+.|..|.+|+.|++++|++. .+|..++++++|+.|+++-|.+. .+|.+|++++.|++|||+.
T Consensus        35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence            456778888887 67888888888888888888888 78888888888888888888887 7888888888888888888


Q ss_pred             cccc-cccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           83 NDFV-GSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        83 N~~~-g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      |+++ ..+|..|+-+..|+.|+|+.|.|.=..|
T Consensus       112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~  144 (264)
T KOG0617|consen  112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPP  144 (264)
T ss_pred             cccccccCCcchhHHHHHHHHHhcCCCcccCCh
Confidence            8877 4577778888888888888888764433

>PLN03150 hypothetical protein; Provisional

Probab=99.23  E-value=9.1e-12  Score=137.76  Aligned_cols=106  Identities=31%  Similarity=0.483  Sum_probs=96.6

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      ++.|+|++|+|+|.+|++|+.|++|+.|+|++|+|+|.+|..++.+++|+.|+|++|+|+|.+|..++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccChhhhcC-CCCCEEECCCCC
Q 007711           83 NDFVGSLSPEIYKL-QVLSESQVDEGQ  108 (592)
Q Consensus        83 N~~~g~ip~~~~~~-~~l~~l~l~~n~  108 (592)
                      |+|+|.+|..++.. .++..+++++|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            99999999988764 344555555543

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.22  E-value=5.8e-11  Score=109.48  Aligned_cols=129  Identities=15%  Similarity=0.108  Sum_probs=93.4

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCcee-eeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV-NLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv-~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      +.++.|.++.||+++.. +..+++|.......      ....+..|++.+..+.+.+++ +++++..  .  ..++||||
T Consensus         4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~------~~~~~~~E~~~l~~l~~~~~~P~~~~~~~--~--~~~lv~e~   72 (170)
T cd05151           4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE------LLINRENEAENSKLAAEAGIGPKLYYFDP--E--TGVLITEF   72 (170)
T ss_pred             eecCCcccCceEEEEEC-CeEEEEEeCCCCcc------cccCHHHHHHHHHHHHHhCCCCceEEEeC--C--CCeEEEEe
Confidence            46889999999999875 67888887643221      123467888888888665554 4554432  2  23799999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCC---CeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP---PIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~---~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      +++.++.+..       .   ....++.+++++++.||....   .++|+|+++.||+++ ++.+++.|||.+..
T Consensus        73 i~G~~l~~~~-------~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          73 IEGSELLTED-------F---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             cCCCcccccc-------c---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            9998875430       0   112356789999999998762   369999999999999 66899999998653

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.20  E-value=1.8e-11  Score=131.03  Aligned_cols=146  Identities=12%  Similarity=0.115  Sum_probs=90.5

Q ss_pred             cccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCC------------------------C-c----hhHHH------HHH
Q 007711          304 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKD------------------------W-P----KNLEV------QFR  347 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~------------------------~-~----~~~~~------~f~  347 (592)
                      +.||+|++|.||+|++++ |+.||||+......+.                        . .    .+..+      +|.
T Consensus       125 ~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~ElD~~  204 (537)
T PRK04750        125 KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHDELDLM  204 (537)
T ss_pred             hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHhhCHH
Confidence            579999999999999987 9999999987542110                        0 0    01122      344


Q ss_pred             HHHHHHhcC----CCCceeeeeEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHH-HHHhhcC
Q 007711          348 KKIDTLSKV----NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYC-LEHMHQL  422 (592)
Q Consensus       348 ~e~~~l~~l----~H~niv~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~g-l~yLH~~  422 (592)
                      +|+.-+.++    .+.+.+.+-.++.+-. ...+|||||++++.+.++-.... ...+   +..++...++. +.-++..
T Consensus       205 ~Ea~N~~~~~~~f~~~~~v~VP~v~~d~s-t~~VLvmE~i~G~~l~d~~~l~~-~g~d---~~~la~~~v~~~~~Qif~~  279 (537)
T PRK04750        205 REAANASQLRRNFEDSDMLYVPEVYWDYC-SETVMVMERMYGIPVSDVAALRA-AGTD---MKLLAERGVEVFFTQVFRD  279 (537)
T ss_pred             HHHHHHHHHHHHccCCCCeecceeecccC-CCceEEEeeecCccHHhHHHHHh-cCCC---HHHHHHHHHHHHHHHHHhC
Confidence            455444444    2444444333332211 14579999999999976432111 1122   12233332222 2223455


Q ss_pred             CCCeEeeCcCCCCeEEcCCC----ceEEecCCcchhhh
Q 007711          423 NPPIAHNYLNSSAVHLTEDY----AAKLSDLSFWNEIA  456 (592)
Q Consensus       423 ~~~ivH~dLk~~NiLl~~~~----~~ki~DfGla~~~~  456 (592)
                      +  ++|+|+||.||+++.++    .+++.|||+...+.
T Consensus       280 G--ffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~  315 (537)
T PRK04750        280 G--FFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLN  315 (537)
T ss_pred             C--eeeCCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence            6  99999999999999988    99999999987664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.15  E-value=1.9e-12  Score=113.16  Aligned_cols=107  Identities=33%  Similarity=0.492  Sum_probs=90.8

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCccccc-CCccccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP-LPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~-iP~~~~~~~~L~~l~l   80 (592)
                      .|+.|++.+|+++ .+|..|.++++|+.|+++-|++. .+|..||+++.|++|||.+|+++.. +|..|..++.|+.|+|
T Consensus        57 nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl  134 (264)
T KOG0617|consen   57 NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL  134 (264)
T ss_pred             hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence            3677888888887 68888888888999999888888 7888888888899999988888754 7888888888888889


Q ss_pred             cCcccccccChhhhcCCCCCEEECCCCCCCc
Q 007711           81 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        81 ~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      +.|.|. -+|+.++++++|+.|.+..|.+-.
T Consensus       135 ~dndfe-~lp~dvg~lt~lqil~lrdndll~  164 (264)
T KOG0617|consen  135 GDNDFE-ILPPDVGKLTNLQILSLRDNDLLS  164 (264)
T ss_pred             cCCCcc-cCChhhhhhcceeEEeeccCchhh
Confidence            888887 788888888888888888888764

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.03  E-value=3.1e-09  Score=99.00  Aligned_cols=141  Identities=12%  Similarity=0.137  Sum_probs=98.0

Q ss_pred             cccCcCCCeEEEEEEeCC-------CcEEEEEEeeeccc-----CCCc------------hhHHHHHH----HHHHHHhc
Q 007711          304 NVIGSSPIGTVYKGTLSN-------GVEIAVASVSVASA-----KDWP------------KNLEVQFR----KKIDTLSK  355 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~-------~~~vavk~~~~~~~-----~~~~------------~~~~~~f~----~e~~~l~~  355 (592)
                      ..||.|-=+.||.|.-.+       +..+|||+.+....     ..+.            ....+.+.    +|.+.|.+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999998543       47999998764221     0000            11233344    78999988


Q ss_pred             CCC--CceeeeeEEEecCCCcceEEEEeeCCCCCchh-hccccCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCeEeeCc
Q 007711          356 VNH--KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFE-HIHIKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYL  431 (592)
Q Consensus       356 l~H--~niv~l~g~~~~~~~~~~~lv~Ey~~~gsL~~-~l~~~~~~~l~~~~~~~ia~~ia~gl~yL-H~~~~~ivH~dL  431 (592)
                      +..  -++.+.+++  .    ..+|||||+.+..+.. .++   ...++.....++..++..++.+| |.++  +|||||
T Consensus        83 l~~~Gv~vP~pi~~--~----~~~lvME~Ig~~~~~~~~Lk---d~~~~~~~~~~i~~~i~~~l~~l~H~~g--lVHGDL  151 (197)
T cd05146          83 MQKAGIPCPEVVVL--K----KHVLVMSFIGDDQVPAPKLK---DAKLNDEEMKNAYYQVLSMMKQLYKECN--LVHADL  151 (197)
T ss_pred             HHHcCCCCCeEEEe--c----CCEEEEEEcCCCCccchhhh---ccccCHHHHHHHHHHHHHHHHHHHHhCC--eecCCC
Confidence            853  456666654  2    3479999997654422 121   11234445667788999999999 8888  999999


Q ss_pred             CCCCeEEcCCCceEEecCCcchhhh
Q 007711          432 NSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       432 k~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++.|||++ ++.++|.|||-+....
T Consensus       152 s~~NIL~~-~~~v~iIDF~qav~~~  175 (197)
T cd05146         152 SEYNMLWH-DGKVWFIDVSQSVEPT  175 (197)
T ss_pred             CHHHEEEE-CCcEEEEECCCceeCC
Confidence            99999997 4679999999876543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.03  E-value=3.1e-09  Score=102.45  Aligned_cols=144  Identities=14%  Similarity=0.150  Sum_probs=106.5

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCC--CceeeeeEEEecCCC-cceEEEE
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH--KNFVNLIGFCEEEEP-FTRMMVF  380 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H--~niv~l~g~~~~~~~-~~~~lv~  380 (592)
                      +.|+.|.++.||+++..+|..+++|........    ....++..|++++..+++  .++.++++++..... ...++||
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~----~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~   79 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALL----PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVM   79 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccC----cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEE
Confidence            458999999999999877778888876433221    123467889999999875  445677777765320 1347999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC--------------------------------------
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL--------------------------------------  422 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~--------------------------------------  422 (592)
                      ||+++.++.+.+..   ..++...+..++.++++++.+||+.                                      
T Consensus        80 e~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (223)
T cd05154          80 ERVDGRVLRDRLLR---PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPA  156 (223)
T ss_pred             EEeCCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHH
Confidence            99999888765531   3466777778888888888888842                                      


Q ss_pred             ----------------CCCeEeeCcCCCCeEEcC--CCceEEecCCcchh
Q 007711          423 ----------------NPPIAHNYLNSSAVHLTE--DYAAKLSDLSFWNE  454 (592)
Q Consensus       423 ----------------~~~ivH~dLk~~NiLl~~--~~~~ki~DfGla~~  454 (592)
                                      ...++|+|+.+.||+++.  +..+.|.||+.+..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         157 MERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             HHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                            134799999999999998  66789999998764

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.00  E-value=3.7e-10  Score=118.02  Aligned_cols=245  Identities=20%  Similarity=0.221  Sum_probs=158.9

Q ss_pred             HHHHHHhhhhcccCc--CCCeEEEEEEe---CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEE
Q 007711          294 ELEAACEDFSNVIGS--SPIGTVYKGTL---SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGF  367 (592)
Q Consensus       294 el~~~~~~~~~~lG~--G~~g~Vy~g~~---~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~  367 (592)
                      ++.+.+..+...+|.  |.+|.||++..   .++..+|+|.-+.....   ......=.+|+....++ .|+|.++....
T Consensus       110 s~~~~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~---p~~~~~k~~~~~s~~~i~~~~~~v~~~~~  186 (524)
T KOG0601|consen  110 SFFDQRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSP---PLDSKRKLREFLSHHKIDSHENPVRDSPA  186 (524)
T ss_pred             chhhhhcccccccccCCCCCceeecccCCcccCCcccccccccCCCCC---ccccccccchhhcccccCccccccccCcc
Confidence            344444555678999  99999999986   35677777763222211   01112234566666677 49999998777


Q ss_pred             EecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHH----HHHHhhcCCCCeEeeCcCCCCeEEcCC-C
Q 007711          368 CEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAY----CLEHMHQLNPPIAHNYLNSSAVHLTED-Y  442 (592)
Q Consensus       368 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~----gl~yLH~~~~~ivH~dLk~~NiLl~~~-~  442 (592)
                      +..++  ..++-+|++. .+|.++.+... ..+.......+..+..+    |+.++|...  ++|-|+||.||.+..+ .
T Consensus       187 ~e~~~--~lfiqtE~~~-~sl~~~~~~~~-~~~p~~~l~~~~~~~~~~~~~al~~~hs~~--~~~~~~kp~~i~~~~~~~  260 (524)
T KOG0601|consen  187 WEGSG--ILFIQTELCG-ESLQSYCHTPC-NFLPDNLLWNSLRDWLSRDVTALSHLHSNN--IVHDDLKPANIFTTSDWT  260 (524)
T ss_pred             cccCC--cceeeecccc-chhHHhhhccc-ccCCchhhhhHHhhhhhcccccccccCCCc--ccccccchhheecccccc
Confidence            77766  5688888885 68888776431 22333334444555555    999999998  9999999999999999 8


Q ss_pred             ceEEecCCcchhhhhhhhhhccc--------ccCCCCC-----CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHH
Q 007711          443 AAKLSDLSFWNEIAMAEMAATSK--------KLSSAPS-----ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAAD  509 (592)
Q Consensus       443 ~~ki~DfGla~~~~~~~~~~~~~--------~~~~~~~-----~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~  509 (592)
                      ..+++|||+...+..........        ..|..++     ++..+|+|++|.|.+|-.++.......  ....|.+ 
T Consensus       261 s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g--~~~~W~~-  337 (524)
T KOG0601|consen  261 SCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVG--KNSSWSQ-  337 (524)
T ss_pred             eeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCC--CCCCccc-
Confidence            89999999988776544222111        2233333     577899999999999999987665221  1111211 


Q ss_pred             HhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          510 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       ++.      ...+  .++.+.-..++...+..+++.+|-.|++.+.+..
T Consensus       338 -~r~------~~ip--~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~  378 (524)
T KOG0601|consen  338 -LRQ------GYIP--LEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTA  378 (524)
T ss_pred             -ccc------ccCc--hhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhc
Confidence             111      1100  0112222334556888899999999999877654

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.96  E-value=7.2e-09  Score=93.23  Aligned_cols=136  Identities=15%  Similarity=0.144  Sum_probs=93.6

Q ss_pred             ccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCc---hhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          305 VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP---KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       305 ~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~---~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+++|+=..+|.+.|.+. .+.+|.-..+......   .-....-.+|+.++.+++--.|..-.=+..+..  ...|+||
T Consensus         3 ~i~~GAEa~i~~~~~~g~-~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~--~~~I~me   79 (204)
T COG3642           3 LIKQGAEAIIYLTDFLGL-PAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPD--NGLIVME   79 (204)
T ss_pred             hhhCCcceeEEeeeccCc-ceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCC--CCEEEEE
Confidence            578999999999987543 3455543333222210   111334567888888876444332222333333  5579999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      |+++-.|.+.+...         +..++..+-.-+.-||..+  |+|+||.++||++..+. +.+.|||++..-
T Consensus        80 ~I~G~~lkd~l~~~---------~~~~~r~vG~~vg~lH~~g--ivHGDLTtsNiIl~~~~-i~~IDfGLg~~s  141 (204)
T COG3642          80 YIEGELLKDALEEA---------RPDLLREVGRLVGKLHKAG--IVHGDLTTSNIILSGGR-IYFIDFGLGEFS  141 (204)
T ss_pred             EeCChhHHHHHHhc---------chHHHHHHHHHHHHHHhcC--eecCCCccceEEEeCCc-EEEEECCccccc
Confidence            99998888887532         3557777778888899999  99999999999998665 899999998643

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.95  E-value=6.9e-09  Score=92.81  Aligned_cols=145  Identities=14%  Similarity=0.118  Sum_probs=97.1

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCC---chhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDW---PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~---~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+-+|+-+.|+++.+. |+...||.-..+.....   ..-..+...+|++.+.+++--.|.--.-++.+..  .-.|+|
T Consensus        13 ~likQGAEArv~~~~~~-Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~--~~~i~M   89 (229)
T KOG3087|consen   13 ELIKQGAEARVPRGSFS-GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTY--GGQIYM   89 (229)
T ss_pred             eeeeccceeeEeeeccC-CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecC--CCeEEE
Confidence            56889999999999984 55555554332222211   1123456778999998886444332222333333  347999


Q ss_pred             eeCCC-CCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC---ceEEecCCcch
Q 007711          381 EYAPN-GTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAKLSDLSFWN  453 (592)
Q Consensus       381 Ey~~~-gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~---~~ki~DfGla~  453 (592)
                      ||+++ -++.+++.........-.....++..+-+.+.-||..+  |+|+||.++||++..++   .+.+.|||++.
T Consensus        90 E~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~nd--iiHGDLTTSNill~~~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen   90 EFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDND--IIHGDLTTSNILLRSDGNQITPILIDFGLSS  164 (229)
T ss_pred             EeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCC--eecccccccceEEecCCCcCceEEEeecchh
Confidence            99976 36777776433222223333678888888999999999  99999999999997654   45899999864

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.91  E-value=6.9e-09  Score=109.66  Aligned_cols=159  Identities=16%  Similarity=0.165  Sum_probs=110.9

Q ss_pred             eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEeeCCCCCchhhccccCCC
Q 007711          319 LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE  398 (592)
Q Consensus       319 ~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~  398 (592)
                      ..++.+|.|...+....     .......+-++.|+.+|||||++++......+  ..|||+|-+.  -|..++....  
T Consensus        34 k~~~~~vsVF~~~~~~~-----~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~--~~ylvTErV~--Pl~~~lk~l~--  102 (690)
T KOG1243|consen   34 KADGGPVSVFVYKRSNG-----EVTELAKRAVKRLKTLRHPNILSYLDTTEEEG--TLYLVTERVR--PLETVLKELG--  102 (690)
T ss_pred             eccCCceEEEEEeCCCc-----hhhHHHHHHHHHhhhccCchhhhhhhhhcccC--ceEEEeeccc--cHHHHHHHhH--
Confidence            34677888776654432     12344667788999999999999999887776  6799999874  3545554222  


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhh-cCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh---hhcccccCCCCCCC
Q 007711          399 HLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM---AATSKKLSSAPSAS  474 (592)
Q Consensus       399 ~l~~~~~~~ia~~ia~gl~yLH-~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~---~~~~~~~~~~~~~s  474 (592)
                         -....-.+.||+.||.||| +++  ++|+++.-..|.+++.|+.||++|.++........   ....-..+..|..-
T Consensus       103 ---~~~v~~Gl~qIl~AL~FL~~d~~--lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~  177 (690)
T KOG1243|consen  103 ---KEEVCLGLFQILAALSFLNDDCN--LVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEI  177 (690)
T ss_pred             ---HHHHHHHHHHHHHHHHHHhccCC--eeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhc
Confidence               2223335679999999996 677  99999999999999999999999987654432111   00001112233322


Q ss_pred             CC----CcchhhHHHHHHHHhCC
Q 007711          475 LE----SNVYNFGVLLFEMVTGR  493 (592)
Q Consensus       475 ~k----sDVwSfGvvl~El~tG~  493 (592)
                      .+    .|.|-||+++||++.|.
T Consensus       178 ~~s~~s~D~~~Lg~li~el~ng~  200 (690)
T KOG1243|consen  178 DPSEWSIDSWGLGCLIEELFNGS  200 (690)
T ss_pred             CccccchhhhhHHHHHHHHhCcc
Confidence            23    49999999999999983

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.86  E-value=1.5e-09  Score=113.48  Aligned_cols=236  Identities=15%  Similarity=0.162  Sum_probs=155.1

Q ss_pred             hcccCcCCCeEEEEEEe--CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEE
Q 007711          303 SNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~--~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ...||.|.|+.||+...  .++..+++|.+.......   .....-..|+-+...+ .|.++++....+....  ..++-
T Consensus       270 v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~---~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r--~~~ip  344 (524)
T KOG0601|consen  270 VSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATF---ASDIFSLGEVILEAILGSHLPSVGKNSSWSQLR--QGYIP  344 (524)
T ss_pred             eEEccCCccccceeeeecCCCCceEeChhhhccccch---HhhhcchhhhhHhhHhhcccccCCCCCCccccc--cccCc
Confidence            36799999999998774  357788888765443322   1111122344444444 4888887665555544  35799


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC-CceEEecCCcchhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~-~~~ki~DfGla~~~~~~  458 (592)
                      -|||+++++...+  .....++...++++..+++.++.++|+..  ++|+|+||+||++..+ +..+++|||.+..++..
T Consensus       345 ~e~~~~~s~~l~~--~~~~~~d~~~~~~~~~q~~~~l~~i~s~~--~~~~d~~psni~i~~~~~~~~~~~~~~~t~~~~~  420 (524)
T KOG0601|consen  345 LEFCEGGSSSLRS--VTSQMLDEDPRLRLTAQILTALNVIHSKL--FVHLDVKPSNILISNDGFFSKLGDFGCWTRLAFS  420 (524)
T ss_pred             hhhhcCcchhhhh--HHHHhcCcchhhhhHHHHHhccccccchh--hhcccccccceeeccchhhhhcccccccccccee
Confidence            9999999987655  33456777788899999999999999888  9999999999999986 88899999998743211


Q ss_pred             hh--hhc------ccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          459 EM--AAT------SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       459 ~~--~~~------~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                      ..  ...      .+.....-+...+.|++|||..+.|.+|+..--..    ...|           ..+........+.
T Consensus       421 ~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~----~~~~-----------~~i~~~~~p~~~~  485 (524)
T KOG0601|consen  421 SGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSES----GVQS-----------LTIRSGDTPNLPG  485 (524)
T ss_pred             cccccccccccccchhhccccccccccccccccccccccccCcccCcc----cccc-----------eeeecccccCCCc
Confidence            11  000      11111122356789999999999999997543210    0111           1111111111122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      .. ..+..+.......++..||.+.++....+.
T Consensus       486 ~~-~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~  517 (524)
T KOG0601|consen  486 LK-LQLQVLLKVMINPDRKRRPSAVELSLHSEF  517 (524)
T ss_pred             hH-HhhhhhhhhhcCCccccchhhhhhcccchh
Confidence            22 556677888889999999999887655443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.85  E-value=3.9e-10  Score=116.81  Aligned_cols=108  Identities=18%  Similarity=0.356  Sum_probs=77.5

Q ss_pred             eeecccCCcccc-ccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            3 VMCRNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         3 ~~~l~l~~~~l~-g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      |+..|++.|.|+ +.+|.....+++++.|.|....|. .+|++++.|++|+.|.+++|+|. ++=..++.++.|+.+.+.
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R   86 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVR   86 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhh
Confidence            456789999998 567888888888888888888777 77888888888888888887776 455556666666666666


Q ss_pred             Ccccc-cccChhhhcCCCCCEEECCCCCCCcc
Q 007711           82 NNDFV-GSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        82 ~N~~~-g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      .|++. ..||+.++++..|+.||||+|+|...
T Consensus        87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev  118 (1255)
T KOG0444|consen   87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLREV  118 (1255)
T ss_pred             ccccccCCCCchhcccccceeeecchhhhhhc
Confidence            66664 34666666666666666666666643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.84  E-value=2.6e-10  Score=112.51  Aligned_cols=109  Identities=27%  Similarity=0.355  Sum_probs=94.0

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCcccc-CCCCCCeEecc
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG-INHSLTILLLD   81 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~-~~~~L~~l~l~   81 (592)
                      |+.||..+|-|+ ++|++++.+.+|..|+|..|.+. .+| +|++|..|..|.++.|++. .+|.+.. .+++|.+|||-
T Consensus       185 L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR  260 (565)
T KOG0472|consen  185 LKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR  260 (565)
T ss_pred             HHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence            456677777665 88999999999999999999998 788 7889999999999999988 8887775 78999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      .|++. ..|.+++.+++|..||+|+|.+++-.+..
T Consensus       261 dNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sL  294 (565)
T KOG0472|consen  261 DNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSL  294 (565)
T ss_pred             ccccc-cCchHHHHhhhhhhhcccCCccccCCccc
Confidence            99998 89999999999999999999999876644

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.83  E-value=3.4e-08  Score=91.73  Aligned_cols=131  Identities=15%  Similarity=0.195  Sum_probs=83.0

Q ss_pred             EEEEEEeCCCcEEEEEEeeeccc---------------------CCCchhHHHHHHHHHHHHhcCCCC--ceeeeeEEEe
Q 007711          313 TVYKGTLSNGVEIAVASVSVASA---------------------KDWPKNLEVQFRKKIDTLSKVNHK--NFVNLIGFCE  369 (592)
Q Consensus       313 ~Vy~g~~~~~~~vavk~~~~~~~---------------------~~~~~~~~~~f~~e~~~l~~l~H~--niv~l~g~~~  369 (592)
                      .||.|...+|..+|||.......                     ..+.........+|.+.|.++...  ++.+.+++- 
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~-   79 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN-   79 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE-
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe-
Confidence            48999988999999998764310                     011122345677899999999766  456666542 


Q ss_pred             cCCCcceEEEEeeCC--CCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCeEeeCcCCCCeEEcCCCceEE
Q 007711          370 EEEPFTRMMVFEYAP--NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYLNSSAVHLTEDYAAKL  446 (592)
Q Consensus       370 ~~~~~~~~lv~Ey~~--~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yL-H~~~~~ivH~dLk~~NiLl~~~~~~ki  446 (592)
                           ...|||||++  +..+..+....    ++......++.++...+..+ |..+  ++|+||.+.||+++++ .+.|
T Consensus        80 -----~~~ivME~I~~~G~~~~~l~~~~----~~~~~~~~~~~~il~~~~~~~~~~g--ivHGDLs~~NIlv~~~-~~~i  147 (188)
T PF01163_consen   80 -----RNVIVMEYIGEDGVPLPRLKDVD----LSPEEPKELLEEILEEIIKMLHKAG--IVHGDLSEYNILVDDG-KVYI  147 (188)
T ss_dssp             -----TTEEEEE--EETTEEGGCHHHCG----GGGSTHHHHHHHHHHHHHHHHHCTT--EEESS-STTSEEEETT-CEEE
T ss_pred             -----CCEEEEEecCCCccchhhHHhcc----ccchhHHHHHHHHHHHHHHHHHhcC--ceecCCChhhEEeecc-eEEE
Confidence                 2379999998  44443332211    11223455667777766665 7888  9999999999999988 9999


Q ss_pred             ecCCcchhhh
Q 007711          447 SDLSFWNEIA  456 (592)
Q Consensus       447 ~DfGla~~~~  456 (592)
                      .|||.+....
T Consensus       148 IDf~qav~~~  157 (188)
T PF01163_consen  148 IDFGQAVDSS  157 (188)
T ss_dssp             --GTTEEETT
T ss_pred             EecCcceecC
Confidence            9999876543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.83  E-value=5e-10  Score=115.37  Aligned_cols=114  Identities=18%  Similarity=0.146  Sum_probs=93.8

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      +++.|+|+.|++...--.++-+|++|+.|+||+|.|....+++|.-+++|+.|+|++|+++.--|.+|..+..|+.|+|+
T Consensus       270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs  349 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS  349 (873)
T ss_pred             ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence            35678888888876656677889999999999999999889999999999999999999985555677788889999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|+++-.--..|-.+++|++|||++|.+++.|-.
T Consensus       350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence            9998855445677889999999999999877653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.77  E-value=1.5e-09  Score=107.21  Aligned_cols=101  Identities=27%  Similarity=0.392  Sum_probs=72.6

Q ss_pred             cccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCc------------------
Q 007711            6 RNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN------------------   67 (592)
Q Consensus         6 l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~------------------   67 (592)
                      +.+++|.++ .+|..+..+++|..|+|++|-+. .+|.+++.+..|+.|++++|+|. .+|.                  
T Consensus       417 l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi  493 (565)
T KOG0472|consen  417 LVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQI  493 (565)
T ss_pred             HHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccc
Confidence            345555543 66777777777777777777776 57777777777777777776665 4443                  


Q ss_pred             -----c-ccCCCCCCeEeccCcccccccChhhhcCCCCCEEECCCCCCC
Q 007711           68 -----D-LGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS  110 (592)
Q Consensus        68 -----~-~~~~~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~  110 (592)
                           + +..+.+|.+|||.+|.+. .||+.+++|.+|++|++++|.|.
T Consensus       494 ~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  494 GSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence                 3 556777888888888887 78888888888888888888887

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.70  E-value=1.4e-07  Score=92.86  Aligned_cols=146  Identities=12%  Similarity=0.016  Sum_probs=97.6

Q ss_pred             cCcCCCeEEEEEEeCCCcEEEEEEeeecccC----CCc--hhHHHHHHHHHHHHhcCCCCc--eeeeeEEEecCC---Cc
Q 007711          306 IGSSPIGTVYKGTLSNGVEIAVASVSVASAK----DWP--KNLEVQFRKKIDTLSKVNHKN--FVNLIGFCEEEE---PF  374 (592)
Q Consensus       306 lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~----~~~--~~~~~~f~~e~~~l~~l~H~n--iv~l~g~~~~~~---~~  374 (592)
                      +-.-....|++..+ +|+.+.||........    ...  ......+.+|...+.++...+  ....+++.....   ..
T Consensus        30 v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~  108 (268)
T PRK15123         30 FRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPATR  108 (268)
T ss_pred             EecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccc
Confidence            33334445778777 5678888865332210    000  001124778888888874333  344555554321   12


Q ss_pred             ceEEEEeeCCCC-CchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC-------CCceEE
Q 007711          375 TRMMVFEYAPNG-TLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-------DYAAKL  446 (592)
Q Consensus       375 ~~~lv~Ey~~~g-sL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~-------~~~~ki  446 (592)
                      ..+||+|++++- +|.+++........+...+..++.+++..+.-||+.+  |+|+|++++|||++.       +..+.+
T Consensus       109 ~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~G--i~HgDL~~~NiLl~~~~~~~~~~~~~~L  186 (268)
T PRK15123        109 TSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAG--INHRDCYICHFLLHLPFPGREEDLKLSV  186 (268)
T ss_pred             eeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCc--CccCCCChhhEEEeccccCCCCCceEEE
Confidence            468999999876 7888874222233455667789999999999999999  999999999999985       578899


Q ss_pred             ecCCcchh
Q 007711          447 SDLSFWNE  454 (592)
Q Consensus       447 ~DfGla~~  454 (592)
                      .||+.++.
T Consensus       187 IDl~r~~~  194 (268)
T PRK15123        187 IDLHRAQI  194 (268)
T ss_pred             EECCcccc
Confidence            99998754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.69  E-value=3.3e-09  Score=110.09  Aligned_cols=105  Identities=24%  Similarity=0.342  Sum_probs=73.3

Q ss_pred             eeecccCCcccc-ccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccc-cCCCCCCeEec
Q 007711            3 VMCRNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDL-GINHSLTILLL   80 (592)
Q Consensus         3 ~~~l~l~~~~l~-g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~-~~~~~L~~l~l   80 (592)
                      |+.+.+..|+|. .-||++|-.|..|+.|+||.|+|. +.|..+..-+++-+|+||+|++. +||..+ -+++.|-+|+|
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcc
Confidence            444455555552 226777777777777777777777 67777777777777777777776 777654 46777777777


Q ss_pred             cCcccccccChhhhcCCCCCEEECCCCCCC
Q 007711           81 DNNDFVGSLSPEIYKLQVLSESQVDEGQLS  110 (592)
Q Consensus        81 ~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~  110 (592)
                      |+|++. .+|+.+-.+.+|++|+|++|-|.
T Consensus       158 S~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  158 SNNRLE-MLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             ccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence            777776 67777777777777777777553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.66  E-value=1.7e-08  Score=104.25  Aligned_cols=107  Identities=19%  Similarity=0.168  Sum_probs=84.8

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      .+.|||++|.|+..-+..|-++++|+.++|.+|.|. .||...+....|+.|+|.+|.++.--..++..++.|+.||||.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            356999999999888888999999999999999999 8998777777888888888888744445667777788888888


Q ss_pred             cccccccCh-hhhcCCCCCEEECCCCCCCc
Q 007711           83 NDFVGSLSP-EIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        83 N~~~g~ip~-~~~~~~~l~~l~l~~n~l~g  111 (592)
                      |.++ .||. .+-+-.++.+|+|++|.++.
T Consensus       159 N~is-~i~~~sfp~~~ni~~L~La~N~It~  187 (873)
T KOG4194|consen  159 NLIS-EIPKPSFPAKVNIKKLNLASNRITT  187 (873)
T ss_pred             chhh-cccCCCCCCCCCceEEeeccccccc
Confidence            8877 5554 34444677777777777764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.65  E-value=2.7e-08  Score=110.66  Aligned_cols=39  Identities=18%  Similarity=0.216  Sum_probs=18.0

Q ss_pred             CCeEeccCcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           75 LTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        75 L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      |+.|+|++|+++ .||..++++.+|..|+|++|.|+|.++
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence            333444444443 344444444555555555555554433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.65  E-value=2.1e-08  Score=91.56  Aligned_cols=104  Identities=21%  Similarity=0.276  Sum_probs=36.6

Q ss_pred             ceeecccCCccccccCchhhc-CCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccc-cCCCCCCeEe
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDL-GINHSLTILL   79 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~-~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~-~~~~~L~~l~   79 (592)
                      .++.|+|.+|.++ .| +.++ .+.+|+.|+|++|.++ .++ .+..++.|+.|++++|+++ .++..+ ..+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            4567778888776 33 3565 5777888888888887 454 3667788888888888887 565544 3577888888


Q ss_pred             ccCcccccc-cChhhhcCCCCCEEECCCCCCC
Q 007711           80 LDNNDFVGS-LSPEIYKLQVLSESQVDEGQLS  110 (592)
Q Consensus        80 l~~N~~~g~-ip~~~~~~~~l~~l~l~~n~l~  110 (592)
                      |++|++... --..+..+++|+.|+|.+|-++
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            888888632 1245667788888888877765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.55  E-value=1.5e-07  Score=104.70  Aligned_cols=96  Identities=21%  Similarity=0.211  Sum_probs=50.8

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCc---cccC--------------CCCCCeeeccCCcccccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE---GFGE--------------LEELEVLDFGHNNFSGPL   65 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~---~~~~--------------l~~L~~l~l~~N~l~g~i   65 (592)
                      |..|+|++|+|+ .+|.   .+++|+.|+|++|+|++ +|.   .+..              ..+|+.|+|++|+|+ .+
T Consensus       284 L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~L  357 (788)
T PRK15387        284 LCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SL  357 (788)
T ss_pred             cCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CC
Confidence            344555555555 3443   23556666666666654 232   1111              136777888888877 46


Q ss_pred             CccccCCCCCCeEeccCcccccccChhhhcCCCCCEEECCCCCCCc
Q 007711           66 PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        66 P~~~~~~~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      |...   .+|+.|++++|+++ .+|..   ..+|+.|++++|+|++
T Consensus       358 P~lp---~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~  396 (788)
T PRK15387        358 PTLP---SELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS  396 (788)
T ss_pred             CCCC---cccceehhhccccc-cCccc---ccccceEEecCCcccC
Confidence            6432   34555566666665 35532   2345566666666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.53  E-value=7.5e-08  Score=72.12  Aligned_cols=59  Identities=34%  Similarity=0.539  Sum_probs=28.7

Q ss_pred             CCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCcc
Q 007711           26 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND   84 (592)
Q Consensus        26 ~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~   84 (592)
                      +|+.|+|++|+|+..-+..|..+++|++|++++|+++.--|..|..+++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555553333344455555555555555543333344455555555555544

...

>PRK09902 hypothetical protein; Provisional

Probab=98.51  E-value=1.7e-06  Score=80.85  Aligned_cols=146  Identities=10%  Similarity=0.036  Sum_probs=103.6

Q ss_pred             cCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCc-hhHHHHHHHHHHHHhcCCCC--ceeeeeEEEec--CCCcceEEEE
Q 007711          306 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP-KNLEVQFRKKIDTLSKVNHK--NFVNLIGFCEE--EEPFTRMMVF  380 (592)
Q Consensus       306 lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~-~~~~~~f~~e~~~l~~l~H~--niv~l~g~~~~--~~~~~~~lv~  380 (592)
                      -|+||-+-|++-.+.+ ..+-+|.-.......+. ......|.+|...+.++...  .+.+...+...  +.....+||+
T Consensus        26 ~~rgG~SgV~r~~~~g-~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~rA~LVT  104 (216)
T PRK09902         26 YRRNGMSGVQCVERNG-KKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVT  104 (216)
T ss_pred             cCCCCcceEEEEEeCC-cEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceEEEEEE
Confidence            4678888899877744 46777766433333322 33567899999999888533  34444422212  2223468999


Q ss_pred             eeCCC-CCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc--eEEecCCcchh
Q 007711          381 EYAPN-GTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA--AKLSDLSFWNE  454 (592)
Q Consensus       381 Ey~~~-gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~--~ki~DfGla~~  454 (592)
                      |-+++ -+|.+++........+...+..+..++++.++-||+.+  +.|+|+-+.||+++.++.  +++.||.-++.
T Consensus       105 e~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~G--v~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        105 EDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVN--RQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             EeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCC--CcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            97753 47888875444445667778899999999999999999  999999999999986666  99999987654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.51  E-value=1.7e-08  Score=109.71  Aligned_cols=105  Identities=25%  Similarity=0.357  Sum_probs=89.3

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCcc-ccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~-~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      |+.|.|.+|.|+...=+-|.+..+|+.|+|++|+|. .+|.. +.++..|+.|+||+|.|+ .||..+..+..|++|...
T Consensus       361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAH  438 (1081)
T ss_pred             HHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence            567888899998887778888999999999999987 66654 567888999999999998 889888889999999998


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      +|++. ..| ++..++.|+.+|+|.|+|+-
T Consensus       439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  439 SNQLL-SFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             CCcee-ech-hhhhcCcceEEecccchhhh
Confidence            88887 666 88889999999999998874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.48  E-value=1.3e-07  Score=70.78  Aligned_cols=60  Identities=23%  Similarity=0.344  Sum_probs=54.3

Q ss_pred             CCCCeeeccCCcccccCC-ccccCCCCCCeEeccCcccccccChhhhcCCCCCEEECCCCCC
Q 007711           49 EELEVLDFGHNNFSGPLP-NDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQL  109 (592)
Q Consensus        49 ~~L~~l~l~~N~l~g~iP-~~~~~~~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l  109 (592)
                      ++|+.|++++|+++ .|| ..|..+++|++|++++|.++..-|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            47999999999999 555 6778999999999999999977777899999999999999986

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.46  E-value=3.8e-07  Score=102.01  Aligned_cols=99  Identities=23%  Similarity=0.304  Sum_probs=62.5

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCcccc------------
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG------------   70 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~------------   70 (592)
                      |+.|+|++|.+. .||..+.  .+|+.|+|++|+|+ .+|..+.  .+|+.|+|++|+|+ .+|..+.            
T Consensus       243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~  315 (754)
T PRK15370        243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNS  315 (754)
T ss_pred             ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCc
Confidence            456677777766 5666554  46667777777666 4565543  35666666666665 3443211            


Q ss_pred             -------CCCCCCeEeccCcccccccChhhhcCCCCCEEECCCCCCCc
Q 007711           71 -------INHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        71 -------~~~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                             ..++|+.|++++|.|++ +|..+.  ++|+.|++++|+|+.
T Consensus       316 Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~  360 (754)
T PRK15370        316 LTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV  360 (754)
T ss_pred             cccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc
Confidence                   12467788888888875 676553  578888888888873

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.46  E-value=1.2e-06  Score=83.71  Aligned_cols=139  Identities=17%  Similarity=0.175  Sum_probs=93.2

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecc-----------------cCCCchhHHHHHHHHHHHHhcCCCC--ce
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVAS-----------------AKDWPKNLEVQFRKKIDTLSKVNHK--NF  361 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~-----------------~~~~~~~~~~~f~~e~~~l~~l~H~--ni  361 (592)
                      .+++.||.|-=+.||.|..+.|.+++||.=....                 ..+|.-.......+|.+.|.++.-.  .+
T Consensus        94 ~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~V  173 (304)
T COG0478          94 AIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKV  173 (304)
T ss_pred             hhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCC
Confidence            3568899999999999999999999998533211                 0111122344567788888888544  56


Q ss_pred             eeeeEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC
Q 007711          362 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED  441 (592)
Q Consensus       362 v~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~  441 (592)
                      .+.+++-      ...+||||+++-.|...-       ++....-.|+..|..-+.-.-..+  +||+|+..-||++++|
T Consensus       174 P~P~~~n------RHaVvMe~ieG~eL~~~r-------~~~en~~~il~~il~~~~~~~~~G--iVHGDlSefNIlV~~d  238 (304)
T COG0478         174 PKPIAWN------RHAVVMEYIEGVELYRLR-------LDVENPDEILDKILEEVRKAYRRG--IVHGDLSEFNILVTED  238 (304)
T ss_pred             CCccccc------cceeeeehcccceeeccc-------CcccCHHHHHHHHHHHHHHHHHcC--ccccCCchheEEEecC
Confidence            6655542      347999999886664332       111222233444444443333556  9999999999999999


Q ss_pred             CceEEecCCcchh
Q 007711          442 YAAKLSDLSFWNE  454 (592)
Q Consensus       442 ~~~ki~DfGla~~  454 (592)
                      +.+.+.||--+..
T Consensus       239 g~~~vIDwPQ~v~  251 (304)
T COG0478         239 GDIVVIDWPQAVP  251 (304)
T ss_pred             CCEEEEeCccccc
Confidence            9999999975443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.43  E-value=7.8e-08  Score=99.40  Aligned_cols=103  Identities=28%  Similarity=0.399  Sum_probs=64.8

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCC------
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLT------   76 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~------   76 (592)
                      |++|||+.|+++ .+|..+..|+ |+.|.+++|++. .+|..++-+..|..||.+.|++. ++|..++.+.+|+      
T Consensus       123 lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrR  198 (722)
T KOG0532|consen  123 LTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRR  198 (722)
T ss_pred             HHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhh
Confidence            456677777776 5676666666 777777777776 67777776677777777777776 6666665555444      


Q ss_pred             ----------------eEeccCcccccccChhhhcCCCCCEEECCCCCCC
Q 007711           77 ----------------ILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS  110 (592)
Q Consensus        77 ----------------~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~  110 (592)
                                      .||+|+|+++ .||-.|.+|+.|++|.|.+|-|.
T Consensus       199 n~l~~lp~El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  199 NHLEDLPEELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhCCHHHhCCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence                            4455555554 45555555555555555555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.42  E-value=3.5e-07  Score=102.37  Aligned_cols=96  Identities=21%  Similarity=0.315  Sum_probs=44.1

Q ss_pred             eecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCc
Q 007711            4 MCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN   83 (592)
Q Consensus         4 ~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N   83 (592)
                      +.|+|++|+|+ .+|..+.  .+|+.|+|++|+|+ .||..+.  .+|+.|+|++|++. .||..+.  .+|+.|+|++|
T Consensus       202 ~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N  272 (754)
T PRK15370        202 TTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHN  272 (754)
T ss_pred             cEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCC
Confidence            34444444444 3443332  24444444444444 3443322  24445555555544 4444432  24555555555


Q ss_pred             ccccccChhhhcCCCCCEEECCCCCCCc
Q 007711           84 DFVGSLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        84 ~~~g~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      +++ .+|..+.  .+|+.|++++|+|++
T Consensus       273 ~L~-~LP~~l~--~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        273 KIS-CLPENLP--EELRYLSVYDNSIRT  297 (754)
T ss_pred             ccC-ccccccC--CCCcEEECCCCcccc
Confidence            555 3444332  245555555555553

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.41  E-value=1.5e-06  Score=89.54  Aligned_cols=168  Identities=15%  Similarity=0.218  Sum_probs=118.7

Q ss_pred             CeEEEEEE-eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecC--CCcceEEEEeeCCC-C
Q 007711          311 IGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE--EPFTRMMVFEYAPN-G  386 (592)
Q Consensus       311 ~g~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~~~lv~Ey~~~-g  386 (592)
                      ..+.||+. ..+|..+.+|++........     .....-+++++++.|.|+|++..++...  +....++||+|.|+ +
T Consensus       289 ~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~-----nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~  363 (655)
T KOG3741|consen  289 SITTYKATSNVDGNAYVLKRLHGDRDQST-----NKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSP  363 (655)
T ss_pred             cceeEeeeeccCCceeeeeeeccccccCc-----ccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCc
Confidence            35789988 45899999998844333221     1233457889999999999998877521  22257899999886 5


Q ss_pred             Cchhhcccc-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcch
Q 007711          387 TLFEHIHIK-------------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  453 (592)
Q Consensus       387 sL~~~l~~~-------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~  453 (592)
                      +|.++-...             ............++.|+..||.++|+.+  +.-+-|.+++||++.+.+++|+..|...
T Consensus       364 TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssG--LAck~L~~~kIlv~G~~RIriS~C~i~D  441 (655)
T KOG3741|consen  364 TLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSG--LACKTLDLKKILVTGKMRIRISGCGIMD  441 (655)
T ss_pred             hHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcC--ceeecccHhHeEeeCcceEEEeccccee
Confidence            666543211             1123455667788999999999999999  7779999999999999999999988765


Q ss_pred             hhhhhhhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCC
Q 007711          454 EIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGR  493 (592)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~  493 (592)
                      ......   ..+     -+.-.+-|.=-||.+++-|.||.
T Consensus       442 vl~~d~---~~~-----le~~Qq~D~~~lG~ll~aLAt~~  473 (655)
T KOG3741|consen  442 VLQEDP---TEP-----LESQQQNDLRDLGLLLLALATGT  473 (655)
T ss_pred             eecCCC---Ccc-----hhHHhhhhHHHHHHHHHHHhhcc
Confidence            543221   000     01123468888999999999884

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.41  E-value=2.8e-08  Score=107.95  Aligned_cols=103  Identities=18%  Similarity=0.275  Sum_probs=86.7

Q ss_pred             ceeecccCCccccccCch-hhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~-~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l   80 (592)
                      +|+.|+|+.|.|. ++|+ .+.++..|+.|+||+|.|. .||..+.+++.|++|...+|++. .+| .+..++.|+.+||
T Consensus       384 hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDL  459 (1081)
T ss_pred             ceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEec
Confidence            6788899999886 5674 4788899999999999998 78888889999999999999988 788 8888899999999


Q ss_pred             cCcccccccChhhhcCCCCCEEECCCCC
Q 007711           81 DNNDFVGSLSPEIYKLQVLSESQVDEGQ  108 (592)
Q Consensus        81 ~~N~~~g~ip~~~~~~~~l~~l~l~~n~  108 (592)
                      |.|+++-.+-+.....++|++|||++|.
T Consensus       460 S~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  460 SCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             ccchhhhhhhhhhCCCcccceeeccCCc
Confidence            9999986655555666889999998886

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.40  E-value=1.5e-06  Score=92.85  Aligned_cols=148  Identities=16%  Similarity=0.214  Sum_probs=95.7

Q ss_pred             hhh-cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCc-------------------------hh----------HHH
Q 007711          301 DFS-NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP-------------------------KN----------LEV  344 (592)
Q Consensus       301 ~~~-~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~-------------------------~~----------~~~  344 (592)
                      +|. +.|+.++-|.||+|++++|+.||||+..........                         ..          .+-
T Consensus       127 eF~~~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~El  206 (517)
T COG0661         127 EFEPEPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREEL  206 (517)
T ss_pred             HcCCCchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHh
Confidence            344 679999999999999999999999987653221110                         01          122


Q ss_pred             HHHHHHHHHhcCC----CCceeeeeEEEec-CCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHH-HH
Q 007711          345 QFRKKIDTLSKVN----HKNFVNLIGFCEE-EEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL-EH  418 (592)
Q Consensus       345 ~f~~e~~~l~~l~----H~niv~l~g~~~~-~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl-~y  418 (592)
                      +|.+|+.-+.+++    +..=+++-.++.+ ..  ...|+|||++|-.+.+....+. ..++   +..|+..++++. ..
T Consensus       207 Dy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~--~~VLtmE~i~Gi~i~d~~~l~~-~g~d---~k~ia~~~~~~f~~q  280 (517)
T COG0661         207 DYRREAANAERFRENFKDDPDVYVPKVYWEYTT--RRVLTMEWIDGIKISDIAALKS-AGID---RKELAELLVRAFLRQ  280 (517)
T ss_pred             CHHHHHHHHHHHHHHcCCCCCeEeceeehhccC--CcEEEEEeeCCEecccHHHHHh-cCCC---HHHHHHHHHHHHHHH
Confidence            3445555555542    2222333344432 12  3579999999988887753222 3444   334444444432 22


Q ss_pred             hhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          419 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       419 LH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      +-..+  ++|+|..|.||+++.+++.-+-|||+...+.
T Consensus       281 ~~~dg--ffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~  316 (517)
T COG0661         281 LLRDG--FFHADPHPGNILVRSDGRIVLLDFGIVGRLD  316 (517)
T ss_pred             HHhcC--ccccCCCccceEEecCCcEEEEcCcceecCC
Confidence            22345  9999999999999999999999999987664

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.40  E-value=3.4e-06  Score=80.26  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhcCCC--CceeeeeEEEecCCC--cceEEEEeeCCCC-CchhhccccCCCCCCHHHHHHHHHHHHHHHHH
Q 007711          344 VQFRKKIDTLSKVNH--KNFVNLIGFCEEEEP--FTRMMVFEYAPNG-TLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH  418 (592)
Q Consensus       344 ~~f~~e~~~l~~l~H--~niv~l~g~~~~~~~--~~~~lv~Ey~~~g-sL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~y  418 (592)
                      ....+|...+..+..  -.+.+.+++......  ...++|+|++++. +|.+++.....  .+...+..++.+++..++-
T Consensus        56 ~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~--~~~~~~~~ll~~l~~~i~~  133 (206)
T PF06293_consen   56 SRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ--LDPSQRRELLRALARLIAK  133 (206)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc--cchhhHHHHHHHHHHHHHH
Confidence            356778887777743  345566777665321  2358999999874 78888763221  4556678899999999999


Q ss_pred             hhcCCCCeEeeCcCCCCeEEcCCC---ceEEecCCcchhh
Q 007711          419 MHQLNPPIAHNYLNSSAVHLTEDY---AAKLSDLSFWNEI  455 (592)
Q Consensus       419 LH~~~~~ivH~dLk~~NiLl~~~~---~~ki~DfGla~~~  455 (592)
                      ||+.+  |+|+|++++|||++.+.   .+.+.||+.++..
T Consensus       134 lH~~g--i~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  134 LHDAG--IYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             HHHCc--CCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence            99999  99999999999999887   8899999976653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.33  E-value=3.9e-07  Score=100.85  Aligned_cols=166  Identities=20%  Similarity=0.220  Sum_probs=108.8

Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .+|+++|..+++|...++...  ..+..........+...++|||...  +.|+|++|.|++...++..+++|||.....
T Consensus       879 ~~L~~~~~~~~~~~Skl~~~~--~~saepaRs~i~~~vqs~e~L~s~~--r~h~~~~p~~~l~~~~gh~~l~~~~t~~~v  954 (1205)
T KOG0606|consen  879 LPLVGHYLNGGDLPSKLHNSG--CLSAEPARSPILERVQSLESLHSSL--RKHRDLKPDSLLIAYDGHRPLTDFGTLSKV  954 (1205)
T ss_pred             cchhhHHhccCCchhhhhcCC--CcccccccchhHHHHhhhhccccch--hhcccccccchhhcccCCcccCcccccccc
Confidence            479999999999999987532  2333223334456777899999887  899999999999999999999999844332


Q ss_pred             hhhh--------h--------------------------hhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCc
Q 007711          456 AMAE--------M--------------------------AATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLP  495 (592)
Q Consensus       456 ~~~~--------~--------------------------~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P  495 (592)
                      ....        .                          ....+.-+.+|+      -...+|+|++|++++|.++|..|
T Consensus       955 g~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp 1034 (1205)
T KOG0606|consen  955 GLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPP 1034 (1205)
T ss_pred             ccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCC
Confidence            1100        0                          000001112222      35568999999999999999999


Q ss_pred             ccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHH
Q 007711          496 YLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMR  555 (592)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~  555 (592)
                      |..  ....+.++.......+        ...-+.....+..+++..-+..+|.+|-.+.
T Consensus      1035 ~na--~tpq~~f~ni~~~~~~--------~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1035 FNA--ETPQQIFENILNRDIP--------WPEGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             CCC--cchhhhhhccccCCCC--------CCCCccccChhhhhhhhhhhccCchhccCcc
Confidence            942  2233333222222111        1122334445677888888899999997765

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.30  E-value=4.5e-08  Score=101.12  Aligned_cols=100  Identities=27%  Similarity=0.446  Sum_probs=50.7

Q ss_pred             cccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCccc
Q 007711            6 RNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF   85 (592)
Q Consensus         6 l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~   85 (592)
                      +.|.+|.+. .||..+.+|..|++|+|+.|+++ .+|..++.|+ |+.|-+++|+++ .+|..++....|..|+.+.|.+
T Consensus       103 liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  103 LILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI  178 (722)
T ss_pred             HHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhh
Confidence            334444443 34555555555555555555555 4455555444 555555555554 5555555555555555555555


Q ss_pred             ccccChhhhcCCCCCEEECCCCCCC
Q 007711           86 VGSLSPEIYKLQVLSESQVDEGQLS  110 (592)
Q Consensus        86 ~g~ip~~~~~~~~l~~l~l~~n~l~  110 (592)
                      . ++|+.++.+.+|+.|++..|++.
T Consensus       179 ~-slpsql~~l~slr~l~vrRn~l~  202 (722)
T KOG0532|consen  179 Q-SLPSQLGYLTSLRDLNVRRNHLE  202 (722)
T ss_pred             h-hchHHhhhHHHHHHHHHhhhhhh
Confidence            4 44555555555555555554444

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=98.29  E-value=1.4e-05  Score=74.64  Aligned_cols=103  Identities=21%  Similarity=0.240  Sum_probs=80.4

Q ss_pred             HHHHHHhcCCC-CceeeeeEEEecCCCcceEEEEeeCCCCCchhhccc-cCCCCCCHHHHHHHHHHHHHHHHHhhc-CCC
Q 007711          348 KKIDTLSKVNH-KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHI-KESEHLDWGMRLRIAMGMAYCLEHMHQ-LNP  424 (592)
Q Consensus       348 ~e~~~l~~l~H-~niv~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~  424 (592)
                      .|.-+|..+++ +++.+++|+|      ..++|.||...+++.+.-.. ..-..-+|..|.+||.++.+.+.+|++ ...
T Consensus         8 ~E~lll~~l~~~~~~pk~lG~C------G~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~   81 (188)
T PF12260_consen    8 NEPLLLQLLQGSEPFPKLLGSC------GRFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLG   81 (188)
T ss_pred             cHHHHHHHcCCCCCCCCeeeEC------CCEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            47778888876 6999999999      23789999998776532100 011245899999999999999999954 222


Q ss_pred             CeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          425 PIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       425 ~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      .+.-.|++++|+-+++++++|+.|...+....
T Consensus        82 ~~~lcDv~~~nfgv~~~~~lk~iDld~v~~~~  113 (188)
T PF12260_consen   82 FFYLCDVSPDNFGVNDDGRLKLIDLDDVFVED  113 (188)
T ss_pred             cEEEeecchHHeEEeCCCcEEEEechhcchhH
Confidence            48999999999999999999999998765543

Proteins in this uncharacterised family are described as transmembrane proteins.

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.27  E-value=2.5e-07  Score=94.49  Aligned_cols=109  Identities=17%  Similarity=0.126  Sum_probs=80.5

Q ss_pred             eeecccCCcccc------ccCchhhcCCCCCCEEEeeCCccccCCCccccCCCC---CCeeeccCCcccc----cCCccc
Q 007711            3 VMCRNLKDLCLE------GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEE---LEVLDFGHNNFSG----PLPNDL   69 (592)
Q Consensus         3 ~~~l~l~~~~l~------g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~---L~~l~l~~N~l~g----~iP~~~   69 (592)
                      ++.++++.+.+.      ..++..+..+++|+.|+|++|.+.+..+..+..+.+   |+.|++++|++++    .+...+
T Consensus        53 l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l  132 (319)
T cd00116          53 LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL  132 (319)
T ss_pred             ceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH
Confidence            667777777776      235566778888888888888888777777766665   8888888888873    233445


Q ss_pred             cCC-CCCCeEeccCcccccc----cChhhhcCCCCCEEECCCCCCCc
Q 007711           70 GIN-HSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        70 ~~~-~~L~~l~l~~N~~~g~----ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      ..+ ++|+.|+|++|.+++.    ++..+..+..|+.|++++|++++
T Consensus       133 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD  179 (319)
T ss_pred             HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence            556 7888888888888843    34445567788888888888885

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.23  E-value=3.3e-07  Score=93.59  Aligned_cols=111  Identities=24%  Similarity=0.329  Sum_probs=87.6

Q ss_pred             ceeecccCCccccccCchhhcCCCC---CCEEEeeCCcccc----CCCccccCC-CCCCeeeccCCccccc----CCccc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTH---IKSIILRNNSFSG----IIPEGFGEL-EELEVLDFGHNNFSGP----LPNDL   69 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~---L~~l~l~~n~l~g----~iP~~~~~l-~~L~~l~l~~N~l~g~----iP~~~   69 (592)
                      .|+.|+|++|.+.+..+..+..+.+   |+.|++++|++++    .+...+..+ ++|+.|+|++|.+++.    ++..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            4788999999998777777776666   9999999999983    444556667 8999999999999854    33455


Q ss_pred             cCCCCCCeEeccCcccccc----cChhhhcCCCCCEEECCCCCCCcc
Q 007711           70 GINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        70 ~~~~~L~~l~l~~N~~~g~----ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      ..+..|+.|++++|.+++.    ++..+..+++|+.|++++|.+++.
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence            6678899999999999853    444556677999999999998754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.22  E-value=2.3e-06  Score=101.92  Aligned_cols=109  Identities=20%  Similarity=0.201  Sum_probs=52.3

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|.+. .+|..+..+++|+.|+|++|..-+.+|. ++.+++|+.|+|++|..-..+|..+..+++|+.|++++
T Consensus       613 L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~  690 (1153)
T PLN03210        613 LVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR  690 (1153)
T ss_pred             CcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence            344444444443 3444444555555555554443344442 44455555555555444445555555555555555555


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      |...+.+|..+ ++++|+.|++++|...+.+|
T Consensus       691 c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        691 CENLEILPTGI-NLKSLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             CCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence            44444455433 44555555555544333333

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.21  E-value=3.5e-07  Score=87.49  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=73.7

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      ||+.+||+.|.++ .|..+..-++.++.|+||.|.+. .+-. +..+.+|+.||||+|.|+ .+-..-..+.+++.|.|+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            5677788888776 56777777788888888888887 3333 666778888888888877 444444567777888888


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCC
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLS  110 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~  110 (592)
                      .|.+. .+ +.++++-+|..||+++|++.
T Consensus       361 ~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  361 QNKIE-TL-SGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             hhhHh-hh-hhhHhhhhheeccccccchh
Confidence            88775 22 34566777778888888775

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.20  E-value=7.1e-06  Score=87.39  Aligned_cols=167  Identities=16%  Similarity=0.167  Sum_probs=103.6

Q ss_pred             hcCCCCCCHHHHHHHHh------------hhh-cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCc-----------
Q 007711          284 VTGVPKLKRSELEAACE------------DFS-NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP-----------  339 (592)
Q Consensus       284 ~~~~~~~~~~el~~~~~------------~~~-~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~-----------  339 (592)
                      ....|.++.+|+.+.-+            .|. +.||.-+.|.||+|++++|..||||+-+....+...           
T Consensus       134 qD~~Pp~~~ee~~~i~e~ElG~~ie~if~~f~~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~  213 (538)
T KOG1235|consen  134 QDQAPPFPWEEAFKIFEEELGAPIEDIFSEFDEEPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAK  213 (538)
T ss_pred             hccCCCCCHHHHHHHHHHHhCCCHHHHHHhcCcchhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHH
Confidence            34567777776554332            233 679999999999999999999999976543322110           


Q ss_pred             ---------------hh------HHHHHHHHHHHHhcC----CCCc---eeeeeEEEecCCCcceEEEEeeCCCCCchhh
Q 007711          340 ---------------KN------LEVQFRKKIDTLSKV----NHKN---FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEH  391 (592)
Q Consensus       340 ---------------~~------~~~~f~~e~~~l~~l----~H~n---iv~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~  391 (592)
                                     ++      .+-+|.+|++-..++    .|-+   =|+.-.++++-. ..+.|+||||+|..+.|.
T Consensus       214 ~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~~s-t~RVLtME~~~G~~i~Dl  292 (538)
T KOG1235|consen  214 VLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAKNAERFRENFKDFSLLTYVLVPKVYWDLS-TKRVLTMEYVDGIKINDL  292 (538)
T ss_pred             HHHHhCcCCchhhHHHHHHhhhHhhcchHHHHHhHHHHHHHHHhcccccceeCCeehhhcC-cceEEEEEecCCccCCCH
Confidence                           11      122355555543333    4555   122222332211 146899999999888765


Q ss_pred             ccccCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCeEeeCcCCCCeEEcC----CCceEEecCCcchhhhh
Q 007711          392 IHIKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYLNSSAVHLTE----DYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       392 l~~~~~~~l~~~~~~~ia~~ia~gl~yL-H~~~~~ivH~dLk~~NiLl~~----~~~~ki~DfGla~~~~~  457 (592)
                      .... ...++..   .|+..+.++...+ -..+  ++|+|=.|.||++..    ++++.+-|||+......
T Consensus       293 ~~i~-~~gi~~~---~i~~~l~~~~~~qIf~~G--ffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  293 DAID-KRGISPH---DILNKLVEAYLEQIFKTG--FFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             HHHH-HcCCCHH---HHHHHHHHHHHHHHHhcC--CccCCCCCCcEEEecCCCCCccEEEEcccccccccH
Confidence            4322 2233333   4444554443333 2345  999999999999994    67899999999877643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.20  E-value=1.2e-06  Score=80.10  Aligned_cols=87  Identities=30%  Similarity=0.416  Sum_probs=30.0

Q ss_pred             hhcCCCCCCEEEeeCCccccCCCcccc-CCCCCCeeeccCCcccccCCccccCCCCCCeEeccCcccccccChhh-hcCC
Q 007711           20 EIQSLTHIKSIILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEI-YKLQ   97 (592)
Q Consensus        20 ~~~~l~~L~~l~l~~n~l~g~iP~~~~-~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~~g~ip~~~-~~~~   97 (592)
                      .+.++.+++.|+|++|.|+ .|. .++ .+.+|+.|+|++|+++ .++ .+..++.|+.|+|++|+++ .+.+.+ ..++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp   88 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP   88 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred             ccccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence            4567778999999999999 454 576 5889999999999998 664 6888999999999999999 565555 3699


Q ss_pred             CCCEEECCCCCCCc
Q 007711           98 VLSESQVDEGQLSS  111 (592)
Q Consensus        98 ~l~~l~l~~n~l~g  111 (592)
                      +|+.|++++|++..
T Consensus        89 ~L~~L~L~~N~I~~  102 (175)
T PF14580_consen   89 NLQELYLSNNKISD  102 (175)
T ss_dssp             T--EEE-TTS---S
T ss_pred             cCCEEECcCCcCCC
Confidence            99999999999975

>PLN03210 Resistant to P

Probab=98.16  E-value=4.3e-06  Score=99.67  Aligned_cols=104  Identities=22%  Similarity=0.225  Sum_probs=70.6

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|...+.+|.++++|++|+.|+|++|..-+.+|..+ ++++|+.|+|++|..-..+|..   .++|+.|+|++
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~  855 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSR  855 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence            5566677776666677777777777777777765555677655 5777777777776555556543   25677777777


Q ss_pred             cccccccChhhhcCCCCCEEECCC-CCCCc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDE-GQLSS  111 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~-n~l~g  111 (592)
                      |.++ .+|..+..+++|+.|+|++ |+|.+
T Consensus       856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             CCCc-cChHHHhcCCCCCEEECCCCCCcCc
Confidence            7776 5777777777777777776 44443

syringae 6; Provisional

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.06  E-value=4.5e-05  Score=73.61  Aligned_cols=138  Identities=9%  Similarity=0.056  Sum_probs=79.9

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCc--eeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN--FVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~n--iv~l~g~~~~~~~~~~~lv~E  381 (592)
                      ..||+|..+.||+.   .+..+++|......       ......+|.+.++.+..-.  +.+.++++...+  ...+|||
T Consensus         7 ~~i~~G~t~~~y~~---~~~~~VlR~~~~~~-------~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~--~~glv~e   74 (226)
T TIGR02172         7 TQTGEGGNGESYTH---KTGKWMLKLYNPGF-------DKETIKREFDASRKVFSLGIPTPHPFDLVEDGG--RLGLIYE   74 (226)
T ss_pred             eeecCCCCcceeEe---cCCCEEEEeCCCCC-------CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCC--eeeeeee
Confidence            46899999999984   24455666653211       1234578898888876443  356677776555  3478999


Q ss_pred             eCCCCC-chhh---------------------ccccCCCCCCHHHHH-HHHH----------HHHH-HHHHhh--cCCCC
Q 007711          382 YAPNGT-LFEH---------------------IHIKESEHLDWGMRL-RIAM----------GMAY-CLEHMH--QLNPP  425 (592)
Q Consensus       382 y~~~gs-L~~~---------------------l~~~~~~~l~~~~~~-~ia~----------~ia~-gl~yLH--~~~~~  425 (592)
                      +++|.. +...                     +|.-.........+. ++..          .+.. ...+|.  ...+.
T Consensus        75 ~i~G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~  154 (226)
T TIGR02172        75 LIVGKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTST  154 (226)
T ss_pred             ecCCccchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCc
Confidence            998853 1111                     111100111111100 0000          1111 122232  23345


Q ss_pred             eEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          426 IAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       426 ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ++|+|+.|.||++++++ +.|.||+.+..
T Consensus       155 ~~HgD~~~~Nii~~~~~-~~iIDwe~a~~  182 (226)
T TIGR02172       155 CLHGDFQIGNLITSGKG-TYWIDLGDFGY  182 (226)
T ss_pred             eEecCCCCCcEEEcCCC-cEEEechhcCc
Confidence            88999999999999888 99999997653

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.04  E-value=3.9e-07  Score=77.45  Aligned_cols=105  Identities=21%  Similarity=0.220  Sum_probs=86.7

Q ss_pred             eeecccCCccccccCchh---hcCCCCCCEEEeeCCccccCCCccccCC-CCCCeeeccCCcccccCCccccCCCCCCeE
Q 007711            3 VMCRNLKDLCLEGTLAPE---IQSLTHIKSIILRNNSFSGIIPEGFGEL-EELEVLDFGHNNFSGPLPNDLGINHSLTIL   78 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~---~~~l~~L~~l~l~~n~l~g~iP~~~~~l-~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l   78 (592)
                      +-.++|++++|- .|+..   +.....|+.++|++|.|. .+|..|... +-+++|+|++|.++ .+|.++..++.|+.+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            345788888874 45544   455666777799999998 678877755 48999999999999 899999999999999


Q ss_pred             eccCcccccccChhhhcCCCCCEEECCCCCCCc
Q 007711           79 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        79 ~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      +++.|.|. ..|.-+..+.+|..|+..+|.+..
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e  137 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE  137 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCcccc
Confidence            99999998 678888889999999999888763

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.00  E-value=7.9e-05  Score=75.25  Aligned_cols=169  Identities=20%  Similarity=0.241  Sum_probs=105.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh--------hhhhcccccC
Q 007711          397 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--------EMAATSKKLS  468 (592)
Q Consensus       397 ~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~--------~~~~~~~~~~  468 (592)
                      ....+|...++.++.+|.+-+-||..+  .+-+|+.++|+|+++++.+.+.|-..-.....+        ....+.++.-
T Consensus       111 ~P~~~w~fllrvaRnlA~aFA~lH~~G--h~vGDVn~~~~lVsd~~~V~LVdsDsfqi~~ng~~~~cpVg~~eftPPElQ  188 (637)
T COG4248         111 YPHCAWDFLLRVARNLASAFATLHEHG--HVVGDVNQNSFLVSDDSKVVLVDSDSFQINANGTLHLCPVGVSEFTPPELQ  188 (637)
T ss_pred             CCccccHHHHHHHHHHHHHHHHHHhcC--CcccccCccceeeecCceEEEEcccceeeccCCceEecccCccccCCHHHh
Confidence            345789999999999999999999998  888999999999999999999874321111111        1112222221


Q ss_pred             -----CCCCCCCCCcchhhHHHHHHHHh-CCCcccCC-----C-CChH-HHHHHHhcCCCC-CccccCCCCCCCCHHHHH
Q 007711          469 -----SAPSASLESNVYNFGVLLFEMVT-GRLPYLVD-----N-GSLE-DWAADYLSGVQP-LQQFVDPTLSSFDEEQLE  534 (592)
Q Consensus       469 -----~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~-----~-~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  534 (592)
                           ..-+.+...|-|.+||+++|++. |+.||.+-     . ...+ +.+......... -.....+....-..-.+.
T Consensus       189 ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g~f~ya~~~~~g~~p~P~~~P~~~Lpp  268 (637)
T COG4248         189 TLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAHGRFAYASDQRRGLKPPPRSIPLSMLPP  268 (637)
T ss_pred             ccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhcceeeechhccCCCCCCCCCCChhhcCH
Confidence                 12235778999999999999998 59999631     1 1111 111111100000 000011100000122335


Q ss_pred             HHHHHHHHhcccC--CCCCCCHHHHHHHHHhhhCC
Q 007711          535 TLGELIKSCVRAD--PEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       535 ~l~~l~~~Cl~~d--P~~RPs~~ev~~~L~~i~~~  567 (592)
                      .+..+..+|+...  +.-||+++.-+..|.++...
T Consensus       269 ~vqAlF~qaF~~~~~~~~RP~a~aW~aAl~al~~~  303 (637)
T COG4248         269 DVQALFQQAFTESGVATPRPTAKAWVAALDALRQQ  303 (637)
T ss_pred             HHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHh
Confidence            6778888998763  56899999998888887544

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.95  E-value=3.3e-06  Score=90.14  Aligned_cols=137  Identities=20%  Similarity=0.270  Sum_probs=88.9

Q ss_pred             HHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhhhhccc-------------ccCCCCC-----
Q 007711          411 GMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK-------------KLSSAPS-----  472 (592)
Q Consensus       411 ~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~~~~~~-------------~~~~~~~-----  472 (592)
                      +++.|+.|+|..- .+||+++.|++|.++.++..||+.|+++........ +...             ..+.+||     
T Consensus       107 ~v~dgl~flh~sA-k~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~-~p~~~yd~~lp~~~~~~~~f~apE~~~~~  184 (700)
T KOG2137|consen  107 NVADGLAFLHRSA-KVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTE-YPFSEYDPPLPLLLQPHLNFLAPEYLLGT  184 (700)
T ss_pred             cccchhhhhccCc-ceeecccchhheeeccCcceeeccchhhhccCCCCc-cccccCCCCCChhhccCcccccchhhccc
Confidence            4558999999642 399999999999999999999999998765432111 1110             1123444     


Q ss_pred             -CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCC
Q 007711          473 -ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEK  550 (592)
Q Consensus       473 -~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~  550 (592)
                       .+.++|+||+||.+|-+.. |+.-+...+..+..-.....         .+.....+..+.+.++.+=+.+.+..++.-
T Consensus       185 ~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~~~---------~~~~~~~~s~~~p~el~~~l~k~l~~~~~~  255 (700)
T KOG2137|consen  185 TNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSRNL---------LNAGAFGYSNNLPSELRESLKKLLNGDSAV  255 (700)
T ss_pred             cccccccceeeeeEEEEEecCCcchhhccCCcchhhhhhcc---------cccccccccccCcHHHHHHHHHHhcCCccc
Confidence             4788999999999999995 55545333322211111110         111111223445567888888899999999


Q ss_pred             CCCHHHHH
Q 007711          551 RPTMRDIA  558 (592)
Q Consensus       551 RPs~~ev~  558 (592)
                      ||++.++.
T Consensus       256 rp~~~~l~  263 (700)
T KOG2137|consen  256 RPTLDLLL  263 (700)
T ss_pred             Ccchhhhh
Confidence            99776554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.91  E-value=3.9e-06  Score=88.52  Aligned_cols=103  Identities=28%  Similarity=0.342  Sum_probs=71.3

Q ss_pred             cccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCC-CCCeeeccCCcccccCCccccCCCCCCeEeccCcc
Q 007711            6 RNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELE-ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND   84 (592)
Q Consensus         6 l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~-~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~   84 (592)
                      +.++.|.+... +..+..++.++.|++.+|.++ .||...+.+. +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus        98 l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          98 LDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            45555555332 234555677777777777777 6677667664 7777777777777 676677777777777777777


Q ss_pred             cccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           85 FVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        85 ~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      ++ .+|...+.++.|..|++++|+++-.
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~~l  201 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKISDL  201 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccccC
Confidence            77 6666666777777777777777643

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.87  E-value=0.00018  Score=68.51  Aligned_cols=141  Identities=16%  Similarity=0.171  Sum_probs=88.4

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCc-------------------hhHHHHHHHHHHHHhcCC--CCcee
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP-------------------KNLEVQFRKKIDTLSKVN--HKNFV  362 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~-------------------~~~~~~f~~e~~~l~~l~--H~niv  362 (592)
                      ..|.+|.-..||+|.-.++..+|||+.......-..                   .....-..+|..-|.++.  +-.+.
T Consensus        54 g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVrvP  133 (268)
T COG1718          54 GCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVRVP  133 (268)
T ss_pred             eeecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            467888888999999878999999998754321100                   000111234555555542  33344


Q ss_pred             eeeEEEecCCCcceEEEEeeCCCCCc-hhhccccCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCeEeeCcCCCCeEEcC
Q 007711          363 NLIGFCEEEEPFTRMMVFEYAPNGTL-FEHIHIKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYLNSSAVHLTE  440 (592)
Q Consensus       363 ~l~g~~~~~~~~~~~lv~Ey~~~gsL-~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yL-H~~~~~ivH~dLk~~NiLl~~  440 (592)
                      +-+++.      .-.|||||+..... .-.|.   ...+.......+..++.+.+.-| +.++  +||+||..=|||++ 
T Consensus       134 ~Pi~~~------~nVLvMEfIg~~g~pAP~Lk---Dv~~e~~e~~~~~~~~v~~~~~l~~~a~--LVHgDLSEyNiL~~-  201 (268)
T COG1718         134 EPIAFR------NNVLVMEFIGDDGLPAPRLK---DVPLELEEAEGLYEDVVEYMRRLYKEAG--LVHGDLSEYNILVH-  201 (268)
T ss_pred             Cceeec------CCeEEEEeccCCCCCCCCcc---cCCcCchhHHHHHHHHHHHHHHHHHhcC--cccccchhhheEEE-
Confidence            444433      23799999965311 11111   11122224555666777777777 4577  99999999999999 


Q ss_pred             CCceEEecCCcchhhh
Q 007711          441 DYAAKLSDLSFWNEIA  456 (592)
Q Consensus       441 ~~~~ki~DfGla~~~~  456 (592)
                      ++.+.|.|||-+....
T Consensus       202 ~~~p~iID~~QaV~~~  217 (268)
T COG1718         202 DGEPYIIDVSQAVTID  217 (268)
T ss_pred             CCeEEEEECccccccC
Confidence            8899999999876554

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.80  E-value=0.00024  Score=66.93  Aligned_cols=66  Identities=12%  Similarity=0.154  Sum_probs=51.9

Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      .+++|||++|-.|.+...      ++.    .++..+..++.-||..+  ++|+|..|+|+++++++ +++.||+..+.
T Consensus       118 ~~ll~EYIeG~~l~d~~~------i~e----~~~~ki~~~ikqlH~~G--~~HGD~hpgNFlv~~~~-i~iID~~~k~~  183 (229)
T PF06176_consen  118 YVLLMEYIEGVELNDIED------IDE----DLAEKIVEAIKQLHKHG--FYHGDPHPGNFLVSNNG-IRIIDTQGKRM  183 (229)
T ss_pred             EEEEEEEecCeecccchh------cCH----HHHHHHHHHHHHHHHcC--CccCCCCcCcEEEECCc-EEEEECccccc
Confidence            468999999988866532      221    24566777889999999  99999999999999655 89999987653

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.78  E-value=0.00029  Score=68.96  Aligned_cols=138  Identities=10%  Similarity=0.081  Sum_probs=79.8

Q ss_pred             cCcCCC-eEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEEEEeeC
Q 007711          306 IGSSPI-GTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVFEYA  383 (592)
Q Consensus       306 lG~G~~-g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~lv~Ey~  383 (592)
                      |-.|.+ ..||+...+ +..+.||......        ..+..+|++++..+. +--+.+++++....+  ..++||||+
T Consensus         6 ~~~g~~~~~v~~~~~~-~~~~~vk~~~~~~--------~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~--~~~lv~e~i   74 (244)
T cd05150           6 VTEGQSGATVYRLDGK-NPGLYLKIAPSGP--------TYELEREAERLRWLAGKLPVPEVIDYGSDDG--RAWLLTSAV   74 (244)
T ss_pred             cCCCCCcCeEEEEcCC-CCcEEEEecCCCc--------ccchHHHHHHHHHHHhcCCCCeEEEEEecCC--ccEEEEEee
Confidence            445555 789998764 4566677653221        124567888877773 434556777765543  458999999


Q ss_pred             CCCCchhhc-------------------cccCC--CCCC--HHHHHHHHH--------------------HHHHHHHHhh
Q 007711          384 PNGTLFEHI-------------------HIKES--EHLD--WGMRLRIAM--------------------GMAYCLEHMH  420 (592)
Q Consensus       384 ~~gsL~~~l-------------------~~~~~--~~l~--~~~~~~ia~--------------------~ia~gl~yLH  420 (592)
                      ++.++....                   |....  ..+.  +..+.....                    .+......|-
T Consensus        75 ~G~~l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  154 (244)
T cd05150          75 PGVPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELE  154 (244)
T ss_pred             CCccHhHhhcccCHHHHHHHHHHHHHHHhcCCcccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHH
Confidence            987775331                   11000  0111  001110000                    0111222221


Q ss_pred             -----cCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          421 -----QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       421 -----~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                           ...+.++|+|+.+.|||++++....|.||+.+..
T Consensus       155 ~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~  193 (244)
T cd05150         155 ATRPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLGV  193 (244)
T ss_pred             hhCCCcCceEEECCCCCCccEEEeCCcEEEEEEcccccc
Confidence                 1234699999999999999988889999997653

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.78  E-value=3.7e-06  Score=80.63  Aligned_cols=107  Identities=18%  Similarity=0.145  Sum_probs=88.3

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .++.|+|+.|++. .+- ++..|++|+.|+||+|.++ .+-.+=..+.+..+|.|+.|.+. ++ .++..+-+|..||++
T Consensus       308 kir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~  382 (490)
T KOG1259|consen  308 KLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLS  382 (490)
T ss_pred             ceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheecccc
Confidence            4788999999997 333 4889999999999999998 56666678899999999999875 22 456777889999999


Q ss_pred             Cccccccc-ChhhhcCCCCCEEECCCCCCCccc
Q 007711           82 NNDFVGSL-SPEIYKLQVLSESQVDEGQLSSAA  113 (592)
Q Consensus        82 ~N~~~g~i-p~~~~~~~~l~~l~l~~n~l~g~~  113 (592)
                      +|++...= ...+|+++.|..+.|-+|-+.+..
T Consensus       383 ~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  383 SNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             ccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            99998432 346899999999999999998753

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.77  E-value=1.9e-05  Score=54.35  Aligned_cols=36  Identities=28%  Similarity=0.510  Sum_probs=19.1

Q ss_pred             CCCEEEeeCCccccCCCccccCCCCCCeeeccCCccc
Q 007711           26 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS   62 (592)
Q Consensus        26 ~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~   62 (592)
                      +|++|+|++|+|+ .||..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 45555555555555555555554

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.71  E-value=2.4e-05  Score=82.59  Aligned_cols=106  Identities=26%  Similarity=0.287  Sum_probs=69.1

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+++.|.++ .+|...+.++.|..|++++|+++ .+|..++.+..|+.|.+++|... .+|..+..+.++..+.+.
T Consensus       164 ~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~  240 (394)
T COG4886         164 NLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELS  240 (394)
T ss_pred             cccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccC
Confidence            3566777777777 56666667777777777777777 67766656666777777777533 455556666666666666


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      +|++. .+|..++.+..+++|++++|+++-
T Consensus       241 ~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         241 NNKLE-DLPESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             Cceee-eccchhccccccceeccccccccc
Confidence            66665 225555666666666666666653

>PLN02876 acyl-CoA dehydrogenase

Probab=97.71  E-value=0.00048  Score=79.46  Aligned_cols=81  Identities=11%  Similarity=0.213  Sum_probs=54.2

Q ss_pred             cccCcCCCeEEEEEEeCCC---cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCce--eeeeEEEecCCC-cce
Q 007711          304 NVIGSSPIGTVYKGTLSNG---VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNF--VNLIGFCEEEEP-FTR  376 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~---~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~ni--v~l~g~~~~~~~-~~~  376 (592)
                      ..++.|.++.+|+..+.++   ..+++|+.......    .....+.+|+++|+.+. |.++  .+++++|.+... ...
T Consensus        44 ~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~----~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~  119 (822)
T PLN02876         44 SQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLL----QSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTA  119 (822)
T ss_pred             EEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccC----ccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCc
Confidence            5688999999999887654   35555544221111    12346889999999985 6665  778888876421 135


Q ss_pred             EEEEeeCCCCCc
Q 007711          377 MMVFEYAPNGTL  388 (592)
Q Consensus       377 ~lv~Ey~~~gsL  388 (592)
                      ++||||+++..+
T Consensus       120 flVME~v~G~~~  131 (822)
T PLN02876        120 FYIMEYLEGRIF  131 (822)
T ss_pred             eEEEEecCCccc
Confidence            899999987543

>PRK10593 hypothetical protein; Provisional

Probab=97.68  E-value=0.00088  Score=67.53  Aligned_cols=77  Identities=14%  Similarity=0.113  Sum_probs=53.3

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCC---CceeeeeEEEecCC-CcceEEE
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH---KNFVNLIGFCEEEE-PFTRMMV  379 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H---~niv~l~g~~~~~~-~~~~~lv  379 (592)
                      +.||.|..+.||+-...+++ +.+|..+...       ....|..|.+.++.+..   -.+.+++++|.... ....++|
T Consensus        20 ~~i~~G~~~~vy~~~~~~~~-~~~k~~~~~~-------~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LV   91 (297)
T PRK10593         20 ECISEQPYAALWALYDSQGN-PMPLMARSFS-------TPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLL   91 (297)
T ss_pred             eecCCccceeEEEEEcCCCC-EEEEEecccc-------cchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEE
Confidence            56999999999998765554 5555532211       12468899999988853   36778888886431 1146899


Q ss_pred             EeeCCCCCc
Q 007711          380 FEYAPNGTL  388 (592)
Q Consensus       380 ~Ey~~~gsL  388 (592)
                      ||+++++++
T Consensus        92 mE~i~G~~~  100 (297)
T PRK10593         92 LERLRGVSV  100 (297)
T ss_pred             EeccCCEec
Confidence            999998765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.66  E-value=1.5e-05  Score=79.37  Aligned_cols=100  Identities=17%  Similarity=0.142  Sum_probs=86.6

Q ss_pred             ccccCch-hhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCcccccccCh
Q 007711           13 LEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSP   91 (592)
Q Consensus        13 l~g~~p~-~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~~g~ip~   91 (592)
                      ..+..|. .|..|++|+.|+|++|++++.=+.+|..+.+++.|.|..|++.----..|-.+..|++|+|++|+++-.-|.
T Consensus       261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence            4445553 489999999999999999999999999999999999999999733334567889999999999999999999


Q ss_pred             hhhcCCCCCEEECCCCCCCcc
Q 007711           92 EIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        92 ~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      .|..+.+|++|+|-.|-|...
T Consensus       341 aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             cccccceeeeeehccCcccCc
Confidence            999999999999999888754

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.66  E-value=0.00055  Score=63.73  Aligned_cols=129  Identities=19%  Similarity=0.259  Sum_probs=87.7

Q ss_pred             hhhcccCcCCC-eEEEEEEeCCCcEEEEEEeeecccCCC----------------chhHHHHHHHHHHHHhcCC---CCc
Q 007711          301 DFSNVIGSSPI-GTVYKGTLSNGVEIAVASVSVASAKDW----------------PKNLEVQFRKKIDTLSKVN---HKN  360 (592)
Q Consensus       301 ~~~~~lG~G~~-g~Vy~g~~~~~~~vavk~~~~~~~~~~----------------~~~~~~~f~~e~~~l~~l~---H~n  360 (592)
                      +|.+.||.|.. |.|||.+. +|..+|+|...--.....                .......|..|.+..++++   +.+
T Consensus        40 ~flefLg~g~~~~~V~kv~I-~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~~e~  118 (207)
T PF13095_consen   40 EFLEFLGHGSHDGYVFKVEI-DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAGREG  118 (207)
T ss_pred             eeeeecCCCCceeEEEEEEE-CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhccccC
Confidence            35678999999 99999998 577999998322110000                0123346888999888774   445


Q ss_pred             e--eeeeEEEecCC----------------CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 007711          361 F--VNLIGFCEEEE----------------PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL  422 (592)
Q Consensus       361 i--v~l~g~~~~~~----------------~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~  422 (592)
                      +  |+++||..-..                .....||.||++...           .+...    -+.+|.+-+..+|..
T Consensus       119 ~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~-----------~~~~~----~~~~~~~dl~~~~k~  183 (207)
T PF13095_consen  119 LWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP-----------PLQIR----DIPQMLRDLKILHKL  183 (207)
T ss_pred             ceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc-----------ccchh----HHHHHHHHHHHHHHC
Confidence            6  99999984321                112357888876532           12222    234566667778999


Q ss_pred             CCCeEeeCcCCCCeEEcCCCceEEecCCcc
Q 007711          423 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  452 (592)
Q Consensus       423 ~~~ivH~dLk~~NiLl~~~~~~ki~DfGla  452 (592)
                      +  |+-+|+++.|..     .-||+|||.+
T Consensus       184 g--I~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  184 G--IVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             C--eeeccCcccccc-----CCEEEecccC
Confidence            9  999999999997     4689999864

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.63  E-value=3.5e-05  Score=53.03  Aligned_cols=36  Identities=36%  Similarity=0.489  Sum_probs=16.6

Q ss_pred             CCCeeeccCCcccccCCccccCCCCCCeEeccCcccc
Q 007711           50 ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFV   86 (592)
Q Consensus        50 ~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~~   86 (592)
                      +|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555554 34444444444444444444444

...

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.57  E-value=0.00062  Score=61.36  Aligned_cols=126  Identities=17%  Similarity=0.102  Sum_probs=80.4

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceee-eeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN-LIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~-l~g~~~~~~~~~~~lv~Ey  382 (592)
                      +.|++|.+|.||.|.|.+ .++++|+-....       ....+..|++++..+.-.++.+ ++.|-      .-.+.|||
T Consensus        28 ~~L~KG~~s~Vyl~~~~~-~~~a~Kvrr~ds-------~r~~l~kEakiLeil~g~~~~p~vy~yg------~~~i~me~   93 (201)
T COG2112          28 KELAKGTTSVVYLGEWRG-GEVALKVRRRDS-------PRRNLEKEAKILEILAGEGVTPEVYFYG------EDFIRMEY   93 (201)
T ss_pred             hhhhcccccEEEEeeccC-ceEEEEEecCCc-------chhhHHHHHHHHHHhhhcCCCceEEEec------hhhhhhhh
Confidence            569999999999999954 577777543322       3467889999999887766654 33332      12466999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCeEeeCc-CCCCeEEcCCCceEEecCCcchhh
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYL-NSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yL-H~~~~~ivH~dL-k~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      +.+-.|.++-...     +-....+    ++.. +|. -..+  |-|+.| .|...++-.+..+.|.||..|+..
T Consensus        94 i~G~~L~~~~~~~-----~rk~l~~----vlE~-a~~LD~~G--I~H~El~~~~k~vlv~~~~~~iIDFd~At~k  156 (201)
T COG2112          94 IDGRPLGKLEIGG-----DRKHLLR----VLEK-AYKLDRLG--IEHGELSRPWKNVLVNDRDVYIIDFDSATFK  156 (201)
T ss_pred             hcCcchhhhhhcc-----cHHHHHH----HHHH-HHHHHHhc--cchhhhcCCceeEEecCCcEEEEEccchhhc
Confidence            9887876554311     2222333    3333 333 2334  777777 344444444559999999988743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	592
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		8e-22
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-21
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		8e-18
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		9e-18
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		3e-16
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		4e-16
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		4e-16
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		6e-14
3kmw_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		1e-13
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		4e-13
3kmu_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		3e-12
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		9e-12
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		9e-12
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		9e-12
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		9e-12
4h58_A	275	Braf In Complex With Compound 3 Length = 275		9e-12
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-11
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		1e-11
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		1e-11
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		1e-11
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		1e-11
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-11
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		1e-11
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		1e-11
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-11
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		4e-11
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		7e-11
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		3e-10
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		3e-10
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		3e-08
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		6e-08
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		6e-08
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		7e-08
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		9e-08
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		1e-07
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		1e-07
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		1e-07
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		1e-07
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		1e-07
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		2e-07
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		2e-07
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		2e-07
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		2e-07
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-07
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		2e-07
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		3e-07
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		3e-07
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		4e-07
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		8e-07
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		1e-06
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-06
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		2e-06
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		2e-06
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		2e-06
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		2e-06
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-06
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		3e-06
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		3e-06
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-06
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		4e-06
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		4e-06
3a4o_X	286	Lyn Kinase Domain Length = 286		6e-06
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		7e-06
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		7e-06
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		8e-06
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		1e-05
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		1e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		1e-05
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		1e-05
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		2e-05
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		2e-05
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		2e-05
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		2e-05
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		2e-05
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		3e-05
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		3e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		3e-05
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		3e-05
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-05
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		4e-05
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		4e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		4e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		5e-05
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		5e-05
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		5e-05
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		5e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		6e-05
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		6e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		6e-05
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		6e-05
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		6e-05
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		8e-05
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		9e-05
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		9e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		9e-05
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		9e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		1e-04
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		1e-04
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-04
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		1e-04
1fvr_A	327	Tie2 Kinase Domain Length = 327		1e-04
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-04
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		1e-04
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		1e-04
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		1e-04
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-04
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		1e-04
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		1e-04
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		2e-04
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-04
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		2e-04
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		2e-04
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		2e-04
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		2e-04
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		2e-04
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		2e-04
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		3e-04
3fpq_A	290	Crystal Structure Of The Kinase Domain Of Wnk1 Leng		3e-04
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		3e-04
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		3e-04
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		3e-04
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		3e-04
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		3e-04
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		3e-04
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		3e-04
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		3e-04
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		3e-04
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		3e-04
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		4e-04
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		4e-04
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		4e-04
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		4e-04
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		5e-04
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		6e-04
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		8e-04
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		8e-04
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		9e-04
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		9e-04
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 142/298 (47%), Gaps = 32/298 (10%)
Query: 289 KLKR---SELEAACEDFSN--VIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLE 343
           +LKR    EL+ A ++FSN  ++G    G VYKG L++G  +          ++  +  E
Sbjct: 24  QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLK----EERXQGGE 79
Query: 344 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH--LD 401
           +QF+ +++ +S   H+N + L GFC    P  R++V+ Y  NG++   +  +      LD
Sbjct: 80  LQFQTEVEMISMAVHRNLLRLRGFC--MTPTERLLVYPYMANGSVASCLRERPESQPPLD 137
Query: 402 WGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE- 459
           W  R RIA+G A  L ++H   +P I H  + ++ + L E++ A + D      +   + 
Sbjct: 138 WPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDX 197
Query: 460 ---------MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLV------DNGSLE 504
                    +                 +V+ +GV+L E++TG+  + +      D+  L 
Sbjct: 198 HVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLL 257
Query: 505 DWAADYLSGVQPLQQFVDPTLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
           DW    L   + L+  VD  L  ++ +E++E L ++   C ++ P +RP M ++  +L
Sbjct: 258 DWVKGLLKE-KKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 314

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 32/298 (10%)
Query: 289 KLKR---SELEAACEDF--SNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLE 343
           +LKR    EL+ A ++F   N++G    G VYKG L++G  +          ++  +  E
Sbjct: 16  QLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLK----EERTQGGE 71
Query: 344 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH--LD 401
           +QF+ +++ +S   H+N + L GFC    P  R++V+ Y  NG++   +  +      LD
Sbjct: 72  LQFQTEVEMISMAVHRNLLRLRGFC--MTPTERLLVYPYMANGSVASCLRERPESQPPLD 129
Query: 402 WGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN------- 453
           W  R RIA+G A  L ++H   +P I H  + ++ + L E++ A + D            
Sbjct: 130 WPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDX 189
Query: 454 ---EIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLV------DNGSLE 504
                    +                 +V+ +GV+L E++TG+  + +      D+  L 
Sbjct: 190 HVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLL 249
Query: 505 DWAADYLSGVQPLQQFVDPTL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
           DW    L   + L+  VD  L  ++ +E++E L ++   C ++ P +RP M ++  +L
Sbjct: 250 DWVKGLLKE-KKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 306

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 128/286 (44%), Gaps = 34/286 (11%)
Query: 294 ELEAACEDFSN--VIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKID 351
           +LE A  +F +  +IG    G VYKG L +G ++          +        +F  +I+
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQG-----IEEFETEIE 87
Query: 352 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIA 409
           TLS   H + V+LIGFC+E      +++++Y  NG L  H++  +  +  + W  RL I 
Sbjct: 88  TLSFCRHPHLVSLIGFCDERNEM--ILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEIC 145
Query: 410 MGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE-----------IAMA 458
           +G A  L ++H     I H  + S  + L E++  K++D     +           +   
Sbjct: 146 IGAARGLHYLH--TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKG 203
Query: 459 EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR------LPYLVDNGSLEDWAADYLS 512
            +                 +VY+FGV+LFE++  R      LP  + N  L +WA +  +
Sbjct: 204 TLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVN--LAEWAVESHN 261
Query: 513 GVQPLQQFVDPTLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             Q L+Q VDP L+     E L   G+    C+    E RP+M D+
Sbjct: 262 NGQ-LEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDV 306

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 128/286 (44%), Gaps = 34/286 (11%)
Query: 294 ELEAACEDFSN--VIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKID 351
           +LE A  +F +  +IG    G VYKG L +G ++          +        +F  +I+
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQG-----IEEFETEIE 87
Query: 352 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIA 409
           TLS   H + V+LIGFC+E      +++++Y  NG L  H++  +  +  + W  RL I 
Sbjct: 88  TLSFCRHPHLVSLIGFCDERNEM--ILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEIC 145
Query: 410 MGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE-----------IAMA 458
           +G A  L ++H     I H  + S  + L E++  K++D     +           +   
Sbjct: 146 IGAARGLHYLH--TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKG 203
Query: 459 EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR------LPYLVDNGSLEDWAADYLS 512
            +                 +VY+FGV+LFE++  R      LP  + N  L +WA +  +
Sbjct: 204 TLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVN--LAEWAVESHN 261
Query: 513 GVQPLQQFVDPTLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             Q L+Q VDP L+     E L   G+    C+    E RP+M D+
Sbjct: 262 NGQ-LEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDV 306

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 126/277 (45%), Gaps = 21/277 (7%)
Query: 304 NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
           N +G    G VYKG ++N                  + L+ QF ++I  ++K  H+N V 
Sbjct: 37  NKMGEGGFGVVYKGYVNNTT--VAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVE 94
Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWGMRLRIAMGMAYCLEHMHQL 422
           L+GF  + +     +V+ Y PNG+L + +  +  +  L W MR +IA G A  +  +H+ 
Sbjct: 95  LLGFSSDGDDLC--LVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE- 151
Query: 423 NPPIAHNYLNSSAVHLTEDYAAKLSDL-------SFWNEIAMAEMXXXXXXXXXXXXXXX 475
           N  I H  + S+ + L E + AK+SD         F   +  + +               
Sbjct: 152 NHHI-HRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAPEALRGE 210
Query: 476 ---XXNVYNFGVLLFEMVTGRLPYLVDNGS---LEDWAADYLSGVQPLQQFVDPTLSSFD 529
                ++Y+FGV+L E++TG LP + ++     L D   +     + ++ ++D  ++  D
Sbjct: 211 ITPKSDIYSFGVVLLEIITG-LPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDAD 269
Query: 530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG 566
              +E +  +   C+     KRP ++ +  +L+E+T 
Sbjct: 270 STSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 127/277 (45%), Gaps = 21/277 (7%)
Query: 304 NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
           N +G    G VYKG ++N                  + L+ QF ++I  ++K  H+N V 
Sbjct: 37  NKMGEGGFGVVYKGYVNNTT--VAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVE 94
Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWGMRLRIAMGMAYCLEHMHQL 422
           L+GF  + +     +V+ Y PNG+L + +  +  +  L W MR +IA G A  +  +H+ 
Sbjct: 95  LLGFSSDGDDLC--LVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE- 151
Query: 423 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN---EIAMAEMXXXXXXXXXXXXXXX---- 475
           N  I H  + S+ + L E + AK+SD        + A   M                   
Sbjct: 152 NHHI-HRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXXRIVGTTAYMAPEALRGE 210
Query: 476 ---XXNVYNFGVLLFEMVTGRLPYLVDNGS---LEDWAADYLSGVQPLQQFVDPTLSSFD 529
                ++Y+FGV+L E++TG LP + ++     L D   +     + ++ ++D  ++  D
Sbjct: 211 ITPKSDIYSFGVVLLEIITG-LPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDAD 269
Query: 530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG 566
              +E +  +   C+     KRP ++ +  +L+E+T 
Sbjct: 270 STSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 127/277 (45%), Gaps = 21/277 (7%)
Query: 304 NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
           N +G    G VYKG ++N                  + L+ QF ++I  ++K  H+N V 
Sbjct: 31  NKMGEGGFGVVYKGYVNNTT--VAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVE 88
Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWGMRLRIAMGMAYCLEHMHQL 422
           L+GF  + +     +V+ Y PNG+L + +  +  +  L W MR +IA G A  +  +H+ 
Sbjct: 89  LLGFSSDGDDLC--LVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE- 145
Query: 423 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN---EIAMAEMXXXXXXXXXXXXXXX---- 475
           N  I H  + S+ + L E + AK+SD        + A   M                   
Sbjct: 146 NHHI-HRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXXRIVGTTAYMAPEALRGE 204
Query: 476 ---XXNVYNFGVLLFEMVTGRLPYLVDNGS---LEDWAADYLSGVQPLQQFVDPTLSSFD 529
                ++Y+FGV+L E++TG LP + ++     L D   +     + ++ ++D  ++  D
Sbjct: 205 ITPKSDIYSFGVVLLEIITG-LPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDAD 263
Query: 530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG 566
              +E +  +   C+     KRP ++ +  +L+E+T 
Sbjct: 264 STSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 300

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 121/277 (43%), Gaps = 21/277 (7%)
Query: 304 NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
           N  G    G VYKG ++N                  + L+ QF ++I   +K  H+N V 
Sbjct: 28  NKXGEGGFGVVYKGYVNNTT--VAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVE 85
Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWGMRLRIAMGMAYCLEHMHQL 422
           L+GF  + +     +V+ Y PNG+L + +  +  +  L W  R +IA G A  +  +H+ 
Sbjct: 86  LLGFSSDGDDLC--LVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKIAQGAANGINFLHE- 142
Query: 423 NPPIAHNYLNSSAVHLTEDYAAKLSDLS-------FWNEIAMAEMXXXXXXXXXXXXXXX 475
           N  I H  + S+ + L E + AK+SD         F   +  + +               
Sbjct: 143 NHHI-HRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAPEALRGE 201
Query: 476 ---XXNVYNFGVLLFEMVTGRLPYLVDNGS---LEDWAADYLSGVQPLQQFVDPTLSSFD 529
                ++Y+FGV+L E++TG LP + ++     L D   +     + ++ ++D   +  D
Sbjct: 202 ITPKSDIYSFGVVLLEIITG-LPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKXNDAD 260
Query: 530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG 566
              +E    +   C+     KRP ++ +  +L+E T 
Sbjct: 261 STSVEAXYSVASQCLHEKKNKRPDIKKVQQLLQEXTA 297

>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 18/236 (7%)
Query: 336 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK 395
           +DW       F ++   L   +H N + ++G C+        ++  + P G+L+  +H  
Sbjct: 44  RDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEG 103
Query: 396 ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS--DLSFWN 453
            +  +D    ++ A+ MA  +  +H L P I  + LNS +V + ED  A++S  D+ F  
Sbjct: 104 TNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSF 163
Query: 454 E-----IAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA 508
           +      A A +                 ++++F VLL+E+VT  +P+  D  ++E    
Sbjct: 164 QSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPF-ADLSNMEIGMK 222
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
             L G++P    + P +S         + +L+K C+  DP KRP    I  IL ++
Sbjct: 223 VALEGLRPT---IPPGISPH-------VSKLMKICMNEDPAKRPKFDMIVPILEKM 268

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 119/278 (42%), Gaps = 32/278 (11%)
Query: 294 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTL 353
           E+EA+    S  IGS   GTVYKG     V +             P+  +  FR ++  L
Sbjct: 32  EIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPT----PEQFQA-FRNEVAVL 86
Query: 354 SKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMA 413
            K  H N +  +G+  ++      +V ++    +L++H+H++E++   + + + IA   A
Sbjct: 87  RKTRHVNILLFMGYMTKD---NLAIVTQWCEGSSLYKHLHVQETKFQMFQL-IDIARQTA 142
Query: 414 YCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE-------- 459
             ++++H  N  I H  + S+ + L E    K+ D       S W+     E        
Sbjct: 143 QGMDYLHAKN--IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLW 200
Query: 460 MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ 519
           M                 +VY++G++L+E++TG LPY   N   +     ++ G    + 
Sbjct: 201 MAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQ---IIFMVG----RG 253
Query: 520 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
           +  P LS   +   + +  L+  CV+   E+RP    I
Sbjct: 254 YASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQI 291

>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Apo) Length = 271

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 99/235 (42%), Gaps = 18/235 (7%)
Query: 336 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK 395
           +DW       F ++   L   +H N + ++G C+        ++  + P G+L+  +H  
Sbjct: 44  RDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWXPYGSLYNVLHEG 103
Query: 396 ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS--DLSF-- 451
            +  +D    ++ A+  A     +H L P I  + LNS +V + ED  A++S  D+ F  
Sbjct: 104 TNFVVDQSQAVKFALDXARGXAFLHTLEPLIPRHALNSRSVXIDEDXTARISXADVKFSF 163
Query: 452 ---WNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA 508
                  A A +                 + ++F VLL+E+VT  +P+  D  + E    
Sbjct: 164 QSPGRXYAPAWVAPEALQKKPEDTNRRSADXWSFAVLLWELVTREVPF-ADLSNXEIGXK 222
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
             L G++P    + P +S         + +L K C   DP KRP    I  IL +
Sbjct: 223 VALEGLRPT---IPPGISPH-------VSKLXKICXNEDPAKRPKFDXIVPILEK 267

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 32/268 (11%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 21  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 75
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 425
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H  +  
Sbjct: 76  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKS-- 129
Query: 426 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 471
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 130 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 189
Query: 472 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 190 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 242
Query: 532 QLETLGELIKSCVRADPEKRPTMRDIAA 559
             + +  L+  C++   ++RP    I A
Sbjct: 243 CPKAMKRLMAECLKKKRDERPLFPQILA 270

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 32/268 (11%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 18  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 72
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 425
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H  +  
Sbjct: 73  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKS-- 126
Query: 426 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 471
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 127 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 186
Query: 472 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 187 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 239
Query: 532 QLETLGELIKSCVRADPEKRPTMRDIAA 559
             + +  L+  C++   ++RP    I A
Sbjct: 240 CPKAMKRLMAECLKKKRDERPLFPQILA 267

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 32/268 (11%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 21  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 75
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 425
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H  +  
Sbjct: 76  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKS-- 129
Query: 426 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 471
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 130 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 189
Query: 472 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 190 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 242
Query: 532 QLETLGELIKSCVRADPEKRPTMRDIAA 559
             + +  L+  C++   ++RP    I A
Sbjct: 243 CPKAMKRLMAECLKKKRDERPLFPQILA 270

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 32/268 (11%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 16  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 70
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 425
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H  +  
Sbjct: 71  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKS-- 124
Query: 426 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 471
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 125 IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 184
Query: 472 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 185 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 237
Query: 532 QLETLGELIKSCVRADPEKRPTMRDIAA 559
             + +  L+  C++   ++RP    I A
Sbjct: 238 CPKAMKRLMAECLKKKRDERPLFPQILA 265

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 32/268 (11%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 16  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 70
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 425
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H  +  
Sbjct: 71  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKS-- 124
Query: 426 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 471
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 125 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 184
Query: 472 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 185 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 237
Query: 532 QLETLGELIKSCVRADPEKRPTMRDIAA 559
             + +  L+  C++   ++RP    I A
Sbjct: 238 CPKAMKRLMAECLKKKRDERPLFPQILA 265

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 118/279 (42%), Gaps = 36/279 (12%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 32  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 86
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 425
           G+  + +     +V ++    +L+ H+H  E++  +    + IA   A  ++++H     
Sbjct: 87  GYSTKPQ---LAIVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMDYLHA--KS 140
Query: 426 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 471
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 141 IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSN 200
Query: 472 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
                 +VY FG++L+E++TG+LPY   N +  D   + +      +  + P LS     
Sbjct: 201 PYSFQSDVYAFGIVLYELMTGQLPY--SNINNRDQIIEMVG-----RGSLSPDLSKVRSN 253
Query: 532 QLETLGELIKSCVRADPEKRPT----MRDIAAILREITG 566
             + +  L+  C++   ++RP+    + +I  + RE++G
Sbjct: 254 CPKRMKRLMAECLKKKRDERPSFPRILAEIEELARELSG 292

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 32/268 (11%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 43  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 97
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 425
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H     
Sbjct: 98  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHA--KS 151
Query: 426 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 471
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 152 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 211
Query: 472 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 212 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 264
Query: 532 QLETLGELIKSCVRADPEKRPTMRDIAA 559
             + +  L+  C++   ++RP    I A
Sbjct: 265 CPKAMKRLMAECLKKKRDERPLFPQILA 292

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 32/268 (11%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 36  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 90
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 425
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H     
Sbjct: 91  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHA--KS 144
Query: 426 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 471
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 145 IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 204
Query: 472 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 205 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 257
Query: 532 QLETLGELIKSCVRADPEKRPTMRDIAA 559
             + +  L+  C++   ++RP    I A
Sbjct: 258 CPKAMKRLMAECLKKKRDERPLFPQILA 285

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 32/268 (11%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 44  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 98
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 425
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H     
Sbjct: 99  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHA--KS 152
Query: 426 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 471
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 153 IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 212
Query: 472 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 213 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 265
Query: 532 QLETLGELIKSCVRADPEKRPTMRDIAA 559
             + +  L+  C++   ++RP    I A
Sbjct: 266 CPKAMKRLMAECLKKKRDERPLFPQILA 293

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 32/268 (11%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 44  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 98
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 425
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H     
Sbjct: 99  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHA--KS 152
Query: 426 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 471
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 153 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 212
Query: 472 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 213 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 265
Query: 532 QLETLGELIKSCVRADPEKRPTMRDIAA 559
             + +  L+  C++   ++RP    I A
Sbjct: 266 CPKAMKRLMAECLKKKRDERPLFPQILA 293

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 118/279 (42%), Gaps = 36/279 (12%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 20  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 74
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 425
           G+  + +     +V ++    +L+ H+H  E++  +    + IA   A  ++++H     
Sbjct: 75  GYSTKPQ---LAIVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMDYLHA--KS 128
Query: 426 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 471
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 129 IIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDSN 188
Query: 472 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
                 +VY FG++L+E++TG+LPY   N +  D   + +      +  + P LS     
Sbjct: 189 PYSFQSDVYAFGIVLYELMTGQLPY--SNINNRDQIIEMVG-----RGSLSPDLSKVRSN 241
Query: 532 QLETLGELIKSCVRADPEKRPT----MRDIAAILREITG 566
             + +  L+  C++   ++RP+    + +I  + RE++G
Sbjct: 242 CPKRMKRLMAECLKKKRDERPSFPRILAEIEELARELSG 280

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 32/268 (11%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 16  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 70
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 425
           G+    +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H  +  
Sbjct: 71  GYSTAPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKS-- 124
Query: 426 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 471
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 125 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 184
Query: 472 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 185 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 237
Query: 532 QLETLGELIKSCVRADPEKRPTMRDIAA 559
             + +  L+  C++   ++RP    I A
Sbjct: 238 CPKAMKRLMAECLKKKRDERPLFPQILA 265

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 122/295 (41%), Gaps = 37/295 (12%)
Query: 287 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNL---E 343
           +P L  +E+E     +   IG    G V+KG L     +           +    +    
Sbjct: 13  LPTLADNEIE-----YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKF 67
Query: 344 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG 403
            +F++++  +S +NH N V L G           MV E+ P G L+ H  + ++  + W 
Sbjct: 68  QEFQREVFIMSNLNHPNIVKLYGLMHN----PPRMVMEFVPCGDLY-HRLLDKAHPIKWS 122
Query: 404 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-----DYAAKLSDLSFWNE---- 454
           ++LR+ + +A  +E+M   NPPI H  L S  + L          AK++D S   +    
Sbjct: 123 VKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFSLSQQSVHS 182
Query: 455 ----IAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY 510
               +   +                  + Y+F ++L+ ++TG  P+       ++++   
Sbjct: 183 VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPF-------DEYSYGK 235
Query: 511 LSGVQPL-QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           +  +  + ++ + PT+    E+    L  +I+ C   DP+KRP    I   L E+
Sbjct: 236 IKFINMIREEGLRPTIP---EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 114/274 (41%), Gaps = 32/274 (11%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 32  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 86
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 425
           G+    +     +V ++    +L+ H+H  E++  +    + IA   A  ++++H  +  
Sbjct: 87  GYSTAPQ---LAIVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMDYLHAKS-- 140
Query: 426 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 471
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 141 IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSN 200
Query: 472 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
                 +VY FG++L+E++TG+LPY   N +  D   + +      +  + P LS     
Sbjct: 201 PYSFQSDVYAFGIVLYELMTGQLPY--SNINNRDQIIEMVG-----RGSLSPDLSKVRSN 253
Query: 532 QLETLGELIKSCVRADPEKRPTMRDIAAILREIT 565
             + +  L+  C++   ++RP+   I A + E+ 
Sbjct: 254 CPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 121/295 (41%), Gaps = 37/295 (12%)
Query: 287 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNL---E 343
           +P L  +E+E     +   IG    G V+KG L     +           +    +    
Sbjct: 13  LPTLADNEIE-----YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKF 67
Query: 344 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG 403
            +F++++  +S +NH N V L G           MV E+ P G L+ H  + ++  + W 
Sbjct: 68  QEFQREVFIMSNLNHPNIVKLYGLMHN----PPRMVMEFVPCGDLY-HRLLDKAHPIKWS 122
Query: 404 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-----DYAAKLSDLSFWNE---- 454
           ++LR+ + +A  +E+M   NPPI H  L S  + L          AK++D     +    
Sbjct: 123 VKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHS 182
Query: 455 ----IAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY 510
               +   +                  + Y+F ++L+ ++TG  P+       ++++   
Sbjct: 183 VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPF-------DEYSYGK 235
Query: 511 LSGVQPL-QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           +  +  + ++ + PT+    E+    L  +I+ C   DP+KRP    I   L E+
Sbjct: 236 IKFINMIREEGLRPTIP---EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 121/295 (41%), Gaps = 37/295 (12%)
Query: 287 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNL---E 343
           +P L  +E+E     +   IG    G V+KG L     +           +    +    
Sbjct: 13  LPTLADNEIE-----YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKF 67
Query: 344 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG 403
            +F++++  +S +NH N V L G           MV E+ P G L+ H  + ++  + W 
Sbjct: 68  QEFQREVFIMSNLNHPNIVKLYGLMHNPP----RMVMEFVPCGDLY-HRLLDKAHPIKWS 122
Query: 404 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-----DYAAKLSDL--------S 450
           ++LR+ + +A  +E+M   NPPI H  L S  + L          AK++D         S
Sbjct: 123 VKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTSQQSVHS 182
Query: 451 FWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY 510
               +   +                  + Y+F ++L+ ++TG  P+       ++++   
Sbjct: 183 VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPF-------DEYSYGK 235
Query: 511 LSGVQPL-QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           +  +  + ++ + PT+    E+    L  +I+ C   DP+KRP    I   L E+
Sbjct: 236 IKFINMIREEGLRPTIP---EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 114/269 (42%), Gaps = 27/269 (10%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IG+   GTV++    +G ++          +D+      +F +++  + ++ H N V  +
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILME---QDFHAERVNEFLREVAIMKRLRHPNIVLFM 100
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES-EHLDWGMRLRIAMGMAYCLEHMHQLNP 424
           G   +  P    +V EY   G+L+  +H   + E LD   RL +A  +A  + ++H  NP
Sbjct: 101 GAVTQ--PPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNP 158
Query: 425 PIAHNYLNSSAVHLTEDYAAKLSDLS---------FWNEIAMAEMXXXXXXXXXXXXXXX 475
           PI H  L S  + + + Y  K+ D             ++ A                   
Sbjct: 159 PIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPEWMAPEVLRDEPSNE 218
Query: 476 XXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET 535
             +VY+FGV+L+E+ T + P+   N +    A  +      + + ++P +++        
Sbjct: 219 KSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAA-------- 270
Query: 536 LGELIKSCVRADPEKRPTMRDIAAILREI 564
              +I+ C   +P KRP+   I  +LR +
Sbjct: 271 ---IIEGCWTNEPWKRPSFATIMDLLRPL 296

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 114/269 (42%), Gaps = 27/269 (10%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           IG+   GTV++    +G ++          +D+      +F +++  + ++ H N V  +
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILME---QDFHAERVNEFLREVAIMKRLRHPNIVLFM 100
Query: 366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES-EHLDWGMRLRIAMGMAYCLEHMHQLNP 424
           G   +  P    +V EY   G+L+  +H   + E LD   RL +A  +A  + ++H  NP
Sbjct: 101 GAVTQ--PPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNP 158
Query: 425 PIAHNYLNSSAVHLTEDYAAKLSDLS---------FWNEIAMAEMXXXXXXXXXXXXXXX 475
           PI H  L S  + + + Y  K+ D             ++ A                   
Sbjct: 159 PIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNE 218
Query: 476 XXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET 535
             +VY+FGV+L+E+ T + P+   N +    A  +      + + ++P +++        
Sbjct: 219 KSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAA-------- 270
Query: 536 LGELIKSCVRADPEKRPTMRDIAAILREI 564
              +I+ C   +P KRP+   I  +LR +
Sbjct: 271 ---IIEGCWTNEPWKRPSFATIMDLLRPL 296

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 111/276 (40%), Gaps = 48/276 (17%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNL 364
           +G    G V+ GT +    +             P N+  + F ++   + K+ H+  V L
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLK-------PGNMSPEAFLQEAQVMKKLRHEKLVQL 245
Query: 365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMH 420
                EE  +   +V EY   G+L + +  +  ++L       M  +IA GMAY +E M+
Sbjct: 246 YAVVSEEPIY---IVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAY-VERMN 301
Query: 421 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------AMAEMXXXXXXXXXX 470
            +     H  L ++ + + E+   K++D      I          A   +          
Sbjct: 302 YV-----HRDLRAANILVGENLVCKVADFGLGRLIEDNEYTARQGAKFPIKWTAPEAALY 356
Query: 471 XXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 527
                  +V++FG+LL E+ T GR+PY  +V+   L+     Y     P           
Sbjct: 357 GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPP----------- 405
Query: 528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 406 ---ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 438

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVIEYMSKGSLLDFLKGEMGKYLRLPQL 116
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEXT 170
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKIRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGEMGKYLRLPQL 116
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 170
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVIEYMSKGSLLDFLKGEMGKYLRLPQL 116
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 170
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVMEYMSKGCLLDFLKGEMGKYLRLPQL 116
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 170
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 49  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGEMGKYLRLPQL 105
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 106 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 159
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 160 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 219
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 220 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 260

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVCEYMSKGSLLDFLKGEMGKYLRLPQL 116
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 170
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGEMGKYLRLPQL 116
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 170
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 51  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGEMGKYLRLPQL 107
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 108 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 161
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 162 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 221
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 222 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 262

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGEMGKYLRLPQL 116
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLAAANILVGENLVCKVADFGLARLIEDNEYT 170
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGCLLDFLKGEMGKYLRLPQL 116
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 170
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 309 FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGETGKYLRLPQL 365
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 366 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 419
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 420 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 479
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 480 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 520

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 53  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGETGKYLRLPQL 109
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 110 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 163
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 164 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 223
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 224 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 264

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 99/235 (42%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 57  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMNKGSLLDFLKGETGKYLRLPQL 113
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WN 453
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D           W 
Sbjct: 114 VDMSAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEWT 167
Query: 454 EIAMAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A+  +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 168 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 227
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 228 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 268

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 226 FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGETGKYLRLPQL 282
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 283 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 336
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 337 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 396
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 397 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 437

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 226 FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGETGKYLRLPQL 282
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 283 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 336
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 337 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 396
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 397 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 437

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 57  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMNKGSLLDFLKGETGKYLRLPQL 113
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 114 VDMSAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 167
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 168 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 227
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 228 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 268

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 226 FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVGEYMSKGSLLDFLKGETGKYLRLPQL 282
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 283 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 336
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 337 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 396
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 397 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 437

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F ++   + K+ H+  V L     EE P    +V EY   G+L + +  +  ++L     
Sbjct: 50  FLQEAQVMKKLRHEKLVQLYAVVSEE-PIX--IVTEYMSKGSLLDFLKGETGKYLRLPQL 106
Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 455
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 107 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEXT 160
Query: 456 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 161 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 220
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 221 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 261

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 112/285 (39%), Gaps = 45/285 (15%)
Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNF 361
           F   IGS   G V+ G   N  ++                 E  F ++ + + K++H   
Sbjct: 14  FVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS------EEDFIEEAEVMMKLSHPKL 67
Query: 362 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE----SEHLDWGMRLRIAMGMAYCLE 417
           V L G C E+ P    +VFE+  +G L +++  +     +E L  GM L +  GMAY  E
Sbjct: 68  VQLYGVCLEQAPIC--LVFEFMEHGCLSDYLRTQRGLFAAETL-LGMCLDVCEGMAYLEE 124
Query: 418 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMXXXXXXXX--------- 468
                   + H  L +    + E+   K+SD      +   +                  
Sbjct: 125 ------ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEV 178
Query: 469 -XXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 526
                     +V++FGVL++E+ + G++PY  +N S  +   D  +G +       P L+
Sbjct: 179 FSFSRYSSKSDVWSFGVLMWEVFSEGKIPY--ENRSNSEVVEDISTGFR----LYKPRLA 232
Query: 527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDG 571
           S    Q+      +  C R  PE RP     + +LR++  I   G
Sbjct: 233 STHVYQI------MNHCWRERPEDRPA---FSRLLRQLAEIAESG 268

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 33/230 (14%)
Query: 339 PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKE 396
           P +L+  FR+ +  +  +NH N V L    E E+  T  ++ EYA  G +F+++  H + 
Sbjct: 55  PTSLQKLFRE-VRIMKILNHPNIVKLFEVIETEK--TLYLIMEYASGGEVFDYLVAHGRM 111
Query: 397 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 456
            E        +I   + YC    HQ    I H  L +  + L  D   K++D  F NE  
Sbjct: 112 KEKEARSKFRQIVSAVQYC----HQ--KRIVHRDLKAENLLLDADMNIKIADFGFSNEFT 165
Query: 457 M---------AEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA 507
           +         A                   +V++ GV+L+ +V+G LP+  D  +L++  
Sbjct: 166 VGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELR 223
Query: 508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
              L G     ++  P   S D E       L+K  +  +P KR T+  I
Sbjct: 224 ERVLRG-----KYRIPFYMSTDCEN------LLKRFLVLNPIKRGTLEQI 262

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 91/235 (38%), Gaps = 32/235 (13%)
Query: 356 VNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMRLRIAMGMA 413
           +NH N V L    E E+  T  +V EYA  G +F+++  H +  E        +I   + 
Sbjct: 70  LNHPNIVKLFEVIETEK--TLYLVXEYASGGEVFDYLVAHGRXKEKEARAKFRQIVSAVQ 127
Query: 414 YCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---------AEMXXXX 464
           YC +        I H  L +  + L  D   K++D  F NE            A      
Sbjct: 128 YCHQKF------IVHRDLKAENLLLDADXNIKIADFGFSNEFTFGNKLDAFCGAPPYAAP 181
Query: 465 XXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT 524
                        +V++ GV+L+ +V+G LP+  D  +L++     L G     ++  P 
Sbjct: 182 ELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRERVLRG-----KYRIPF 234
Query: 525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPL 579
             S D E       L+K  +  +P KR T+  I        G   D   P + PL
Sbjct: 235 YXSTDCEN------LLKKFLILNPSKRGTLEQIXKDRWXNVGHEDDELKPYVEPL 283

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 35/227 (15%)
Query: 345 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 404
           +F K+   + ++ H N V L+G C  E PF   +V EY P G L +++     E +   +
Sbjct: 74  EFLKEAAVMKEIKHPNLVQLLGVCTLEPPF--YIVTEYMPYGNLLDYLRECNREEVTAVV 131
Query: 405 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIA 456
            L +A  ++  +E++ + N    H  L +    + E++  K++D           +   A
Sbjct: 132 LLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHA 189
Query: 457 MAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG 513
            A+  +                 +V+ FGVLL+E+ T G  PY                G
Sbjct: 190 GAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPY---------------PG 234
Query: 514 VQPLQQFVDPTLSSFDEEQLE----TLGELIKSCVRADPEKRPTMRD 556
           +  L Q  D     +  EQ E     + EL+++C +  P  RP+  +
Sbjct: 235 ID-LSQVYDLLEKGYRMEQPEGCPPKVYELMRACWKWSPADRPSFAE 280

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 95/234 (40%), Gaps = 28/234 (11%)
Query: 348 KKIDTLSKVNHKNFVNLIG-FCEEEEPFTRMMVFEYAPNGTLFEHI-HIKESEHLDWGMR 405
           K+ID L ++NH N +     F E+ E     +V E A  G L   I H K+ + L     
Sbjct: 81  KEIDLLKQLNHPNVIKYYASFIEDNE---LNIVLELADAGDLSRMIKHFKKQKRLIPERT 137
Query: 406 L-RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS---FWNEIAMAEMX 461
           + +  + +   LEHMH     + H  +  + V +T     KL DL    F++    A   
Sbjct: 138 VWKYFVQLCSALEHMHSRR--VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAA-H 194
Query: 462 XXXXXXXXXXXXXXXXNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV 514
                           N YNF       G LL+EM   + P+  D  +L        S  
Sbjct: 195 SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL-------YSLC 247
Query: 515 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT 568
           + ++Q   P L S  +   E L +L+  C+  DPEKRP +  +  + + +   T
Sbjct: 248 KKIEQCDYPPLPS--DHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACT 299

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 32/243 (13%)
Query: 348 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMR 405
           +++  +  +NH N V L    E E+  T  +V EYA  G +F+++  H +  E       
Sbjct: 62  REVRIMKVLNHPNIVKLFEVIETEK--TLYLVMEYASGGEVFDYLVAHGRMKEKEARAKF 119
Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----- 460
            +I   + YC    HQ    I H  L +  + L  D   K++D  F NE           
Sbjct: 120 RQIVSAVQYC----HQ--KFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFC 173
Query: 461 ----XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
                                +V++ GV+L+ +V+G LP+  D  +L++     L G   
Sbjct: 174 GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRERVLRG--- 228
Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 576
             ++  P   S D E       L+K  +  +P KR T+  I        G   D   P +
Sbjct: 229 --KYRIPFYMSTDCEN------LLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYV 280
Query: 577 SPL 579
           +PL
Sbjct: 281 APL 283

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 118/281 (41%), Gaps = 47/281 (16%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNL 364
           +G+   G V+ G  +N  ++             P  + VQ F ++ + +  + H   V L
Sbjct: 20  LGAGQFGEVWMGYYNNSTKVAVKTLK-------PGTMSVQAFLEEANLMKTLQHDKLVRL 72
Query: 365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES------EHLDWGMRLRIAMGMAYCLEH 418
                +EEP    ++ E+   G+L + +   E       + +D+  +  IA GMAY +E 
Sbjct: 73  YAVVTKEEPI--YIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQ--IAEGMAY-IER 127
Query: 419 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW-----NEIAMAE-----MXXXXXXXX 468
            + +     H  L ++ V ++E    K++D         NE    E     +        
Sbjct: 128 KNYI-----HRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAI 182
Query: 469 XXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 527
                    NV++FG+LL+E+VT G++PY           AD +S +   Q +  P + +
Sbjct: 183 NFGCFTIKSNVWSFGILLYEIVTYGKIPYPGRTN------ADVMSALS--QGYRMPRMEN 234
Query: 528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT 568
             +E    L +++K C +   E+RPT   + ++L +    T
Sbjct: 235 CPDE----LYDIMKMCWKEKAEERPTFDYLQSVLDDFYTAT 271

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 96/243 (39%), Gaps = 32/243 (13%)
Query: 348 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMR 405
           +++  +  +NH N V L    E E+  T  +V EYA  G +F+++  H +  E       
Sbjct: 62  REVRIMKVLNHPNIVKLFEVIETEK--TLYLVMEYASGGEVFDYLVAHGRMKEKEARAKF 119
Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-------- 457
            +I   + YC    HQ    I H  L +  + L  D   K++D  F NE           
Sbjct: 120 RQIVSAVQYC----HQ--KFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDAFC 173
Query: 458 -AEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
            A                   +V++ GV+L+ +V+G LP+  D  +L++     L G   
Sbjct: 174 GAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRERVLRG--- 228
Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 576
             ++  P   S D E       L+K  +  +P KR T+  I        G   D   P +
Sbjct: 229 --KYRIPFYMSTDCEN------LLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYV 280
Query: 577 SPL 579
            PL
Sbjct: 281 EPL 283

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 33/230 (14%)
Query: 339 PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKE 396
           P +L+  FR+ +  +  +NH N V L    E E+  T  ++ EYA  G +F+++  H + 
Sbjct: 52  PTSLQKLFRE-VRIMKILNHPNIVKLFEVIETEK--TLYLIMEYASGGEVFDYLVAHGRM 108
Query: 397 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 456
            E        +I   + YC    HQ    I H  L +  + L  D   K++D  F NE  
Sbjct: 109 KEKEARSKFRQIVSAVQYC----HQ--KRIVHRDLKAENLLLDADMNIKIADFGFSNEFT 162
Query: 457 MAEM---------XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA 507
           +                             +V++ GV+L+ +V+G LP+  D  +L++  
Sbjct: 163 VGGKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELR 220
Query: 508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
              L G     ++  P   S D E       L+K  +  +P KR T+  I
Sbjct: 221 ERVLRG-----KYRIPFYMSTDCEN------LLKRFLVLNPIKRGTLEQI 259

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 40/228 (17%)
Query: 345 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHL 400
           + R++I  L    H + + L        P    MV EY   G LF++I     + E E  
Sbjct: 62  KIRREIQNLKLFRHPHIIKLYQVIST--PSDIFMVMEYVSGGELFDYICKNGRLDEKE-- 117
Query: 401 DWGMRL--RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 458
               RL  +I  G+ YC  HM      + H  L    V L     AK++D    N ++  
Sbjct: 118 --SRRLFQQILSGVDYCHRHM------VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 169
Query: 459 EM---------XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAAD 509
           E                           ++++ GV+L+ ++ G LP+  D+  +      
Sbjct: 170 EFLRXSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPF--DDDHVPTLFKK 227
Query: 510 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
              G+    Q+++P++ S           L+K  ++ DP KR T++DI
Sbjct: 228 ICDGIFYTPQYLNPSVIS-----------LLKHMLQVDPMKRATIKDI 264

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 95/243 (39%), Gaps = 32/243 (13%)
Query: 348 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMR 405
           +++  +  +NH N V L    E E+  T  +V EYA  G +F+++  H +  E       
Sbjct: 62  REVRIMKVLNHPNIVKLFEVIETEK--TLYLVMEYASGGEVFDYLVAHGRMKEKEARAKF 119
Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----- 460
            +I   + YC    HQ    I H  L +  + L  D   K++D  F NE           
Sbjct: 120 RQIVSAVQYC----HQ--KFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFC 173
Query: 461 ----XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
                                +V++ GV+L+ +V+G LP+  D  +L++     L G   
Sbjct: 174 GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRERVLRG--- 228
Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 576
             ++  P   S D E       L+K  +  +P KR T+  I        G   D   P +
Sbjct: 229 --KYRIPFYMSTDCEN------LLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYV 280
Query: 577 SPL 579
            PL
Sbjct: 281 EPL 283

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 95/243 (39%), Gaps = 32/243 (13%)
Query: 348 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMR 405
           +++  +  +NH N V L    E E+  T  +V EYA  G +F+++  H +  E       
Sbjct: 62  REVRIMKVLNHPNIVKLFEVIETEK--TLYLVMEYASGGEVFDYLVAHGRMKEKEARAKF 119
Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----- 460
            +I   + YC    HQ    I H  L +  + L  D   K++D  F NE           
Sbjct: 120 RQIVSAVQYC----HQ--KFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDEFC 173
Query: 461 ----XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
                                +V++ GV+L+ +V+G LP+  D  +L++     L G   
Sbjct: 174 GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRERVLRG--- 228
Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 576
             ++  P   S D E       L+K  +  +P KR T+  I        G   D   P +
Sbjct: 229 --KYRIPFYMSTDCEN------LLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYV 280
Query: 577 SPL 579
            PL
Sbjct: 281 EPL 283

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 95/243 (39%), Gaps = 32/243 (13%)
Query: 348 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMR 405
           +++  +  +NH N V L    E E+  T  +V EYA  G +F+++  H +  E       
Sbjct: 62  REVRIMKVLNHPNIVKLFEVIETEK--TLYLVMEYASGGEVFDYLVAHGRMKEKEARAKF 119
Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----- 460
            +I   + YC    HQ    I H  L +  + L  D   K++D  F NE           
Sbjct: 120 RQIVSAVQYC----HQ--KFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFC 173
Query: 461 ----XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
                                +V++ GV+L+ +V+G LP+  D  +L++     L G   
Sbjct: 174 GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRERVLRG--- 228
Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 576
             ++  P   S D E       L+K  +  +P KR T+  I        G   D   P +
Sbjct: 229 --KYRIPFYMSTDCEN------LLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYV 280
Query: 577 SPL 579
            PL
Sbjct: 281 EPL 283

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 47/281 (16%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNL 364
           +G+   G V+ G  +N  ++             P  + VQ F ++ + +  + H   V L
Sbjct: 21  LGAGQFGEVWMGYYNNSTKVAVKTLK-------PGTMSVQAFLEEANLMKTLQHDKLVRL 73
Query: 365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES------EHLDWGMRLRIAMGMAYCLEH 418
                 EEP    ++ EY   G+L + +   E       + +D+  +  IA GMAY +E 
Sbjct: 74  YAVVTREEPI--YIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQ--IAEGMAY-IER 128
Query: 419 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW-----NEIAMAE-----MXXXXXXXX 468
            + +     H  L ++ V ++E    K++D         NE    E     +        
Sbjct: 129 KNYI-----HRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAI 183
Query: 469 XXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 527
                    +V++FG+LL+E+VT G++PY           AD ++ +   Q +  P + +
Sbjct: 184 NFGCFTIKSDVWSFGILLYEIVTYGKIPYPGRTN------ADVMTALS--QGYRMPRVEN 235
Query: 528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT 568
             +E    L +++K C +   E+RPT   + ++L +    T
Sbjct: 236 CPDE----LYDIMKMCWKEKAEERPTFDYLQSVLDDFYTAT 272

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 114/284 (40%), Gaps = 27/284 (9%)
Query: 293 SELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXK-DWPKNLEVQFRKKID 351
           +E+  +C     VIG+   G VYKG L                K  + +   V F  +  
Sbjct: 39  TEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAG 98
Query: 352 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW---GMRLRI 408
            + + +H N + L G   + +P   M++ EY  NG L + +  K+ E       GM   I
Sbjct: 99  IMGQFSHHNIIRLEGVISKYKPM--MIITEYMENGALDKFLREKDGEFSVLQLVGMLRGI 156
Query: 409 AMGMAYCLEHMHQLNPPIAHN--YLNSSAVHLTEDYAAK--LSD---LSFWNEIAMAEMX 461
           A GM Y L +M+ ++  +A     +NS+ V    D+     L D    ++        + 
Sbjct: 157 AAGMKY-LANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIR 215
Query: 462 XXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQF 520
                           +V++FG++++E++T G  PY         W    LS  + ++  
Sbjct: 216 WTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPY---------WE---LSNHEVMKAI 263
Query: 521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
            D        +    + +L+  C + +  +RP   DI +IL ++
Sbjct: 264 NDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 307

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 111/285 (38%), Gaps = 45/285 (15%)
Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNF 361
           F   IGS   G V+ G   N  ++                 E  F ++ + + K++H   
Sbjct: 12  FVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS------EEDFIEEAEVMMKLSHPKL 65
Query: 362 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE----SEHLDWGMRLRIAMGMAYCLE 417
           V L G C E+ P    +V E+  +G L +++  +     +E L  GM L +  GMAY  E
Sbjct: 66  VQLYGVCLEQAPIC--LVTEFMEHGCLSDYLRTQRGLFAAETL-LGMCLDVCEGMAYLEE 122
Query: 418 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMXXXXXXXX--------- 468
                   + H  L +    + E+   K+SD      +   +                  
Sbjct: 123 ------ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEV 176
Query: 469 -XXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 526
                     +V++FGVL++E+ + G++PY  +N S  +   D  +G +       P L+
Sbjct: 177 FSFSRYSSKSDVWSFGVLMWEVFSEGKIPY--ENRSNSEVVEDISTGFR----LYKPRLA 230
Query: 527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDG 571
           S    Q+      +  C R  PE RP     + +LR++  I   G
Sbjct: 231 STHVYQI------MNHCWRERPEDRPA---FSRLLRQLAEIAESG 266

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 405
           F  +   ++++ H N V L+G   EE+     +V EY   G+L +++  +    L     
Sbjct: 52  FLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL 110
Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE------ 459
           L+ ++ +   +E++   N    H  L +  V ++ED  AK+SD     E +  +      
Sbjct: 111 LKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP 168
Query: 460 MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY 496
           +                 +V++FG+LL+E+ + GR+PY
Sbjct: 169 VKWTAPEALREAAFSTKSDVWSFGILLWEIYSFGRVPY 206

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 405
           F  +   ++++ H N V L+G   EE+     +V EY   G+L +++  +    L     
Sbjct: 61  FLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL 119
Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE------ 459
           L+ ++ +   +E++   N    H  L +  V ++ED  AK+SD     E +  +      
Sbjct: 120 LKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP 177
Query: 460 MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY 496
           +                 +V++FG+LL+E+ + GR+PY
Sbjct: 178 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY 215

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 405
           F  +   ++++ H N V L+G   EE+     +V EY   G+L +++  +    L     
Sbjct: 46  FLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL 104
Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE------ 459
           L+ ++ +   +E++   N    H  L +  V ++ED  AK+SD     E +  +      
Sbjct: 105 LKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP 162
Query: 460 MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY 496
           +                 +V++FG+LL+E+ + GR+PY
Sbjct: 163 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY 200

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 405
           F  +   ++++ H N V L+G   EE+     +V EY   G+L +++  +    L     
Sbjct: 233 FLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL 291
Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE------ 459
           L+ ++ +   +E++   N    H  L +  V ++ED  AK+SD     E +  +      
Sbjct: 292 LKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP 349
Query: 460 MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY 496
           +                 +V++FG+LL+E+ + GR+PY
Sbjct: 350 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY 387

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 339 PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKE 396
           P +L+  FR+ +  +  +NH N V L    E E+  T  +V EYA  G +F+++  H + 
Sbjct: 55  PTSLQKLFRE-VRIMKILNHPNIVKLFEVIETEK--TLYLVMEYASGGEVFDYLVAHGRM 111
Query: 397 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 456
            E        +I   + YC    HQ    I H  L +  + L  D   K++D  F NE  
Sbjct: 112 KEKEARAKFRQIVSAVQYC----HQ--KYIVHRDLKAENLLLDGDMNIKIADFGFSNEFT 165
Query: 457 MAEM---------XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA 507
           +                             +V++ GV+L+ +V+G LP+  D  +L++  
Sbjct: 166 VGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELR 223
Query: 508 ADYLSG 513
              L G
Sbjct: 224 ERVLRG 229

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 98/249 (39%), Gaps = 37/249 (14%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 405
           F  ++  LS+VNH N V L G C         +V EYA  G+L+  +H   +E L +   
Sbjct: 49  FIVELRQLSRVNHPNIVKLYGACLN----PVCLVMEYAEGGSLYNVLH--GAEPLPY--- 99
Query: 406 LRIAMGMAYCLE------HMHQLNP-PIAHNYLNSSAVHLTEDYAA-KLSDLSFWNEIAM 457
              A  M++CL+      ++H + P  + H  L    + L       K+ D     +I  
Sbjct: 100 YTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT 159
Query: 458 AEMXXXXXXXXXXXXXXXXXN------VYNFGVLLFEMVTGRLPYLVDNGSLED--WAAD 509
                               N      V+++G++L+E++T R P+    G      WA  
Sbjct: 160 HMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVH 219
Query: 510 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP 569
             +G +P      P + +      + +  L+  C   DP +RP+M +I  I+  +    P
Sbjct: 220 --NGTRP------PLIKNLP----KPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFP 267
Query: 570 DGAIPKLSP 578
               P   P
Sbjct: 268 GADEPLQYP 276

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 94/243 (38%), Gaps = 32/243 (13%)
Query: 348 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMR 405
           +++  +  +NH N V L    E E+  T  +V EYA  G +F+++  H    E       
Sbjct: 55  REVRIMKVLNHPNIVKLFEVIETEK--TLYLVMEYASGGEVFDYLVAHGWMKEKEARAKF 112
Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----- 460
            +I   + YC    HQ    I H  L +  + L  D   K++D  F NE           
Sbjct: 113 RQIVSAVQYC----HQ--KFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFC 166
Query: 461 ----XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
                                +V++ GV+L+ +V+G LP+  D  +L++     L G   
Sbjct: 167 GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRERVLRG--- 221
Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 576
             ++  P   S D E       L+K  +  +P KR T+  I        G   D   P +
Sbjct: 222 --KYRIPFYMSTDCEN------LLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYV 273
Query: 577 SPL 579
            PL
Sbjct: 274 EPL 276

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 117/291 (40%), Gaps = 42/291 (14%)
Query: 283 FVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNL 342
           +  G P   + E+E       + +G    G VY+G      +           +D    +
Sbjct: 11  YFQGSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TM 64
Query: 343 EVQ-FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD 401
           EV+ F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++
Sbjct: 65  EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVN 122
Query: 402 WGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WN 453
             + L +A  ++  +E++ + N    H  L +    + E++  K++D           + 
Sbjct: 123 AVVLLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 180
Query: 454 EIAMAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADY 510
             A A+  +                 +V+ FGVLL+E+ T G  PY              
Sbjct: 181 AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY-------------- 226
Query: 511 LSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
             G+  L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 227 -PGID-LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 275

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 106/274 (38%), Gaps = 44/274 (16%)
Query: 306 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNL 364
           +G+   G V+ GT +   ++             P  +  + F ++   + K+ H   V L
Sbjct: 17  LGNGQFGEVWMGTWNGNTKVAIKTLK-------PGTMSPESFLEEAQIMKKLKHDKLVQL 69
Query: 365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMH 420
                EE  +   +V EY   G+L + +   E   L       M  ++A GMAY +E M+
Sbjct: 70  YAVVSEEPIY---IVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAY-IERMN 125
Query: 421 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------AMAEMXXXXXXXXXX 470
            +     H  L S+ + +      K++D      I          A   +          
Sbjct: 126 YI-----HRDLRSANILVGNGLICKIADFGLARLIEDNEXTARQGAKFPIKWTAPEAALY 180
Query: 471 XXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 529
                  +V++FG+LL E+VT GR+PY   N              + L+Q          
Sbjct: 181 GRFTIKSDVWSFGILLTELVTKGRVPYPGMNNR------------EVLEQVERGYRMPCP 228
Query: 530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
           ++   +L EL+  C + DPE+RPT   + + L +
Sbjct: 229 QDCPISLHELMIHCWKKDPEERPTFEYLQSFLED 262

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 98/249 (39%), Gaps = 37/249 (14%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 405
           F  ++  LS+VNH N V L G C         +V EYA  G+L+  +H   +E L +   
Sbjct: 48  FIVELRQLSRVNHPNIVKLYGACLN----PVCLVMEYAEGGSLYNVLH--GAEPLPY--- 98
Query: 406 LRIAMGMAYCLE------HMHQLNP-PIAHNYLNSSAVHLTEDYAA-KLSDLSFWNEIAM 457
              A  M++CL+      ++H + P  + H  L    + L       K+ D     +I  
Sbjct: 99  YTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT 158
Query: 458 AEMXXXXXXXXXXXXXXXXXN------VYNFGVLLFEMVTGRLPYLVDNGSLED--WAAD 509
                               N      V+++G++L+E++T R P+    G      WA  
Sbjct: 159 HMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVH 218
Query: 510 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP 569
             +G +P      P + +      + +  L+  C   DP +RP+M +I  I+  +    P
Sbjct: 219 --NGTRP------PLIKNLP----KPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFP 266
Query: 570 DGAIPKLSP 578
               P   P
Sbjct: 267 GADEPLQYP 275

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 112/290 (38%), Gaps = 49/290 (16%)
Query: 286 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ 345
           G  +LKR E+    E  S   G   +G  +KG     V++                 E +
Sbjct: 1   GHMELKREEITLLKELGSGQFGVVKLGK-WKGQYDVAVKMIKEGSMS----------EDE 49
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-----IKESEHL 400
           F ++  T+ K++H   V   G C +E P    +V EY  NG L  ++      ++ S+ L
Sbjct: 50  FFQEAQTMMKLSHPKLVKFYGVCSKEYPI--YIVTEYISNGCLLNYLRSHGKGLEPSQLL 107
Query: 401 DWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM 460
           +  M   +  GMA+   H         H  L +    +  D   K+SD      +   + 
Sbjct: 108 E--MCYDVCEGMAFLESHQ------FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY 159
Query: 461 XXXXXXXX----------XXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAAD 509
                                      +V+ FG+L++E+ + G++PY +   S      +
Sbjct: 160 VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNS------E 213
Query: 510 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 559
            +  V    +   P L+S      +T+ +++ SC    PEKRPT + + +
Sbjct: 214 VVLKVSQGHRLYRPHLAS------DTIYQIMYSCWHELPEKRPTFQQLLS 257

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 115/288 (39%), Gaps = 42/288 (14%)
Query: 286 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ 345
           G P   + E+E       + +G    G VY+G      +           +D    +EV+
Sbjct: 1   GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVE 54
Query: 346 -FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 404
            F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   +
Sbjct: 55  EFLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIIIEFMTYGNLLDYLRECNRQEVSAVV 112
Query: 405 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIA 456
            L +A  ++  +E++ + N    H  L +    + E++  K++D           +   A
Sbjct: 113 LLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170
Query: 457 MAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG 513
            A+  +                 +V+ FGVLL+E+ T G  PY                G
Sbjct: 171 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PG 215
Query: 514 VQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
           +  L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 216 ID-LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 115/288 (39%), Gaps = 42/288 (14%)
Query: 286 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ 345
           G P   + E+E       + +G    G VY+G      +           +D    +EV+
Sbjct: 1   GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVE 54
Query: 346 -FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 404
            F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   +
Sbjct: 55  EFLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIIIEFMTYGNLLDYLRECNRQEVSAVV 112
Query: 405 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIA 456
            L +A  ++  +E++ + N    H  L +    + E++  K++D           +   A
Sbjct: 113 LLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170
Query: 457 MAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG 513
            A+  +                 +V+ FGVLL+E+ T G  PY                G
Sbjct: 171 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PG 215
Query: 514 VQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
           +  L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 216 ID-LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 108/282 (38%), Gaps = 38/282 (13%)
Query: 294 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTL 353
           E++ A      +IG    G VY+     G E+          +D  + +E   R++    
Sbjct: 3   EIDFAELTLEEIIGIGGFGKVYRA-FWIGDEVAVKAARHDPDEDISQTIE-NVRQEAKLF 60
Query: 354 SKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL---FEHIHIKESEHLDWGMRLRIAM 410
           + + H N + L G C +E      +V E+A  G L        I     ++W   ++IA 
Sbjct: 61  AMLKHPNIIALRGVCLKEPNLC--LVMEFARGGPLNRVLSGKRIPPDILVNWA--VQIAR 116
Query: 411 GMAYCLEHMHQLNPPIAHNYLNSSAVHLTE--------DYAAKLSDLSF---WNEI---- 455
           GM Y  +   +   PI H  L SS + + +        +   K++D      W+      
Sbjct: 117 GMNYLHD---EAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMS 173
Query: 456 AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ 515
           A                     +V+++GVLL+E++TG +P+      ++  A  Y   + 
Sbjct: 174 AAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPF----RGIDGLAVAYGVAMN 229
Query: 516 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
            L   +  T         E   +L++ C   DP  RP+  +I
Sbjct: 230 KLALPIPSTCP-------EPFAKLMEDCWNPDPHSRPSFTNI 264

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 119/294 (40%), Gaps = 43/294 (14%)
Query: 281 KAFVTGV-PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWP 339
           K  V GV P   + E+E       + +G    G VY+G      +           +D  
Sbjct: 241 KPTVYGVSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED-- 295
Query: 340 KNLEVQ-FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE 398
             +EV+ F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     +
Sbjct: 296 -TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQ 352
Query: 399 HLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF------- 451
            ++  + L +A  ++  +E++ + N    H  L +    + E++  K++D          
Sbjct: 353 EVNAVVLLYMATQISSAMEYLEKKN--FIHRNLAARNCLVGENHLVKVADFGLSRLMTGD 410
Query: 452 -WNEIAMAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 507
            +   A A+  +                 +V+ FGVLL+E+ T G  PY           
Sbjct: 411 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY----------- 459
Query: 508 ADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
                G+  L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 460 ----PGID-LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 508

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 112/284 (39%), Gaps = 42/284 (14%)
Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-FRK 348
           L + E+E       + +G    G VY+G      +           +D    +EV+ F K
Sbjct: 3   LDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEFLK 56
Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI 408
           +   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   + L +
Sbjct: 57  EAAVMKEIKHPNLVQLLGVCTREPPF--YIIIEFMTYGNLLDYLRECNRQEVSAVVLLYM 114
Query: 409 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------AMA 458
           A  ++  +E++ + N    H  L +    + E++  K++D      +          A  
Sbjct: 115 ATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKF 172
Query: 459 EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL 517
            +                 +V+ FGVLL+E+ T G  PY                G+ P 
Sbjct: 173 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGIDPS 217
Query: 518 QQF----VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
           Q +     D  +    E   E + EL+++C + +P  RP+  +I
Sbjct: 218 QVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 260

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 115/288 (39%), Gaps = 42/288 (14%)
Query: 286 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ 345
           G P   + E+E       + +G    G VY+G      +           +D    +EV+
Sbjct: 1   GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVE 54
Query: 346 -FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 404
            F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   +
Sbjct: 55  EFLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVSAVV 112
Query: 405 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIA 456
            L +A  ++  +E++ + N    H  L +    + E++  K++D           +   A
Sbjct: 113 LLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170
Query: 457 MAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG 513
            A+  +                 +V+ FGVLL+E+ T G  PY                G
Sbjct: 171 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PG 215
Query: 514 VQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
           +  L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 216 ID-LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 115/288 (39%), Gaps = 42/288 (14%)
Query: 286 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ 345
           G P   + E+E       + +G    G VY+G      +           +D    +EV+
Sbjct: 1   GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVE 54
Query: 346 -FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 404
            F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   +
Sbjct: 55  EFLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVSAVV 112
Query: 405 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIA 456
            L +A  ++  +E++ + N    H  L +    + E++  K++D           +   A
Sbjct: 113 LLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170
Query: 457 MAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG 513
            A+  +                 +V+ FGVLL+E+ T G  PY                G
Sbjct: 171 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PG 215
Query: 514 VQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
           +  L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 216 ID-LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 115/306 (37%), Gaps = 56/306 (18%)
Query: 291 KRSELEAACEDFSNVIGSSPIGTVYKGTL---SNGVEIXXXXXXXXXXKDWPKNLEVQFR 347
           K  E+  +   F   +G    G VYKG L   + G +           K     L  +FR
Sbjct: 2   KLKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA-EGPLREEFR 60
Query: 348 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG---- 403
            +    +++ H N V L+G   +++P +  M+F Y  +G L E + +  S H D G    
Sbjct: 61  HEAMLRARLQHPNVVCLLGVVTKDQPLS--MIFSYCSHGDLHEFL-VMRSPHSDVGSTDD 117
Query: 404 ---------------MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD 448
                          +  +IA GM Y   H       + H  L +  V + +    K+SD
Sbjct: 118 DRTVKSALEPPDFVHLVAQIAAGMEYLSSHH------VVHKDLATRNVLVYDKLNVKISD 171
Query: 449 LSFWNEIAMAE-----------MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY 496
           L  + E+  A+           +                 +++++GV+L+E+ + G  PY
Sbjct: 172 LGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPY 231
Query: 497 LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRD 556
              +        D +  ++  Q    P      ++    +  L+  C    P +RP  +D
Sbjct: 232 CGYSNQ------DVVEMIRNRQVLPCP------DDCPAWVYALMIECWNEFPSRRPRFKD 279
Query: 557 IAAILR 562
           I + LR
Sbjct: 280 IHSRLR 285

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 115/282 (40%), Gaps = 34/282 (12%)
Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIXXXXXXXXXXKDWPKNLEVQFRK 348
           LK +EL+        V+GS   GTVYKG  +  G  +          +       V+F  
Sbjct: 35  LKETELKRV-----KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMD 89
Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-----IKESEHLDWG 403
           +   ++ ++H + V L+G C      T  +V +  P+G L E++H     I     L+W 
Sbjct: 90  EALIMASMDHPHLVRLLGVCLSP---TIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWC 146
Query: 404 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH--LTEDYAAKL--SDLSFWN-EIAMA 458
             ++IA GM Y  E         A N L  S  H  +T+   A+L   D   +N +    
Sbjct: 147 --VQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKM 204
Query: 459 EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL 517
            +                 +V+++GV ++E++T G  PY   +G       D L   + L
Sbjct: 205 PIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPY---DGIPTREIPDLLEKGERL 261
Query: 518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 559
            Q   P + + D      +  ++  C   D + RP  +++AA
Sbjct: 262 PQ---PPICTID------VYMVMVKCWMIDADSRPKFKELAA 294

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 115/306 (37%), Gaps = 56/306 (18%)
Query: 291 KRSELEAACEDFSNVIGSSPIGTVYKGTL---SNGVEIXXXXXXXXXXKDWPKNLEVQFR 347
           K  E+  +   F   +G    G VYKG L   + G +           K     L  +FR
Sbjct: 19  KLKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA-EGPLREEFR 77
Query: 348 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG---- 403
            +    +++ H N V L+G   +++P +  M+F Y  +G L E + +  S H D G    
Sbjct: 78  HEAMLRARLQHPNVVCLLGVVTKDQPLS--MIFSYCSHGDLHEFL-VMRSPHSDVGSTDD 134
Query: 404 ---------------MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD 448
                          +  +IA GM Y   H       + H  L +  V + +    K+SD
Sbjct: 135 DRTVKSALEPPDFVHLVAQIAAGMEYLSSHH------VVHKDLATRNVLVYDKLNVKISD 188
Query: 449 LSFWNEIAMAE-----------MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY 496
           L  + E+  A+           +                 +++++GV+L+E+ + G  PY
Sbjct: 189 LGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPY 248
Query: 497 LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRD 556
              +        D +  ++  Q    P      ++    +  L+  C    P +RP  +D
Sbjct: 249 CGYSNQ------DVVEMIRNRQVLPCP------DDCPAWVYALMIECWNEFPSRRPRFKD 296
Query: 557 IAAILR 562
           I + LR
Sbjct: 297 IHSRLR 302

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 42/286 (14%)
Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 346
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 4   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 57
Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 406
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 58  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIIIEFMTYGNLLDYLRECNRQEVNAVVLL 115
Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------A 456
            +A  ++  +E++ + N    H  L +    + E++  K++D      +          A
Sbjct: 116 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 173
Query: 457 MAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
              +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 174 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 218
Query: 516 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 219 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 263

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 43/294 (14%)
Query: 281 KAFVTGV-PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWP 339
           K  + GV P   + E+E       + +G    G VY+G      +           +D  
Sbjct: 202 KPTIYGVSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED-- 256
Query: 340 KNLEVQ-FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE 398
             +EV+ F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     +
Sbjct: 257 -TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQ 313
Query: 399 HLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF------- 451
            +   + L +A  ++  +E++ + N    H  L +    + E++  K++D          
Sbjct: 314 EVSAVVLLYMATQISSAMEYLEKKN--FIHRNLAARNCLVGENHLVKVADFGLSRLMTGD 371
Query: 452 -WNEIAMAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 507
            +   A A+  +                 +V+ FGVLL+E+ T G  PY           
Sbjct: 372 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY----------- 420
Query: 508 ADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
                G+  L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 421 ----PGID-LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 469

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 346
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 8   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 61
Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 406
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 62  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIIIEFMTYGNLLDYLRECNRQEVNAVVLL 119
Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 458
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 120 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 459 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 222
Query: 516 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 223 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 115/282 (40%), Gaps = 34/282 (12%)
Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIXXXXXXXXXXKDWPKNLEVQFRK 348
           LK +EL+        V+GS   GTVYKG  +  G  +          +       V+F  
Sbjct: 12  LKETELKRV-----KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMD 66
Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-----IKESEHLDWG 403
           +   ++ ++H + V L+G C      T  +V +  P+G L E++H     I     L+W 
Sbjct: 67  EALIMASMDHPHLVRLLGVCLSP---TIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWC 123
Query: 404 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH--LTEDYAAKL--SDLSFWN-EIAMA 458
             ++IA GM Y  E         A N L  S  H  +T+   A+L   D   +N +    
Sbjct: 124 --VQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKM 181
Query: 459 EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL 517
            +                 +V+++GV ++E++T G  PY   +G       D L   + L
Sbjct: 182 PIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPY---DGIPTREIPDLLEKGERL 238
Query: 518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 559
            Q   P + + D      +  ++  C   D + RP  +++AA
Sbjct: 239 PQ---PPICTID------VYMVMVKCWMIDADSRPKFKELAA 271

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 90/246 (36%), Gaps = 58/246 (23%)
Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR----------- 405
            HKN +NL+G C ++ P    ++ EYA  G L E++  +E   L++              
Sbjct: 92  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSS 149
Query: 406 -------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 458
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 150 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 203
Query: 459 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 506
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 204 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 253
Query: 507 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 562
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 254 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 307
Query: 563 EITGIT 568
            I  +T
Sbjct: 308 RIVALT 313

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 111/284 (39%), Gaps = 42/284 (14%)
Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-FRK 348
           L + E+E       + +G    G VY+G                  +D    +EV+ F K
Sbjct: 3   LDKWEMERTDITMKHKLGGGQFGEVYEGVWKK---YSLTVAVKTLKED---TMEVEEFLK 56
Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI 408
           +   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   + L +
Sbjct: 57  EAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVSAVVLLYM 114
Query: 409 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------AMA 458
           A  ++  +E++ + N    H  L +    + E++  K++D      +          A  
Sbjct: 115 ATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKF 172
Query: 459 EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL 517
            +                 +V+ FGVLL+E+ T G  PY                G+ P 
Sbjct: 173 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGIDPS 217
Query: 518 QQF----VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
           Q +     D  +    E   E + EL+++C + +P  RP+  +I
Sbjct: 218 QVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 260

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 346
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 8   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 61
Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 406
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 62  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 119
Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 458
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 120 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 459 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 222
Query: 516 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 223 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 112/288 (38%), Gaps = 43/288 (14%)
Query: 302 FSNVIGSSPIGTVYKGTLS-NGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKV-NHK 359
           F +VIG    G V K  +  +G+ +              K+    F  +++ L K+ +H 
Sbjct: 26  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS--KDDHRDFAGELEVLCKLGHHP 83
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMR 405
           N +NL+G CE        +  EYAP+G L + +                  +  L     
Sbjct: 84  NIINLLGACEHRGYL--YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 141
Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEI----AMAE 459
           L  A  +A  ++++ Q      H  L +  + + E+Y AK++D  LS   E+     M  
Sbjct: 142 LHFAADVARGMDYLSQ--KQFIHRNLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGR 199
Query: 460 MXXXXXXXXXXXXXXXXXN--VYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP 516
           +                 N  V+++GVLL+E+V+ G  PY              L    P
Sbjct: 200 LPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYC-------GMTCAELYEKLP 252
Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
               ++  L+  DE     + +L++ C R  P +RP+   I   L  +
Sbjct: 253 QGYRLEKPLNCDDE-----VYDLMRQCWREKPYERPSFAQILVSLNRM 295

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 346
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 8   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 61
Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 406
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 62  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 119
Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 458
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 120 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 459 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 222
Query: 516 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 223 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 346
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 4   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 57
Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 406
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 58  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 115
Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 458
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 116 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGA 173
Query: 459 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 174 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 218
Query: 516 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 219 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 263

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 346
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 7   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 60
Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 406
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 61  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 118
Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 458
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 119 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 176
Query: 459 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 177 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 221
Query: 516 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 222 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 266

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 42/286 (14%)
Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 346
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 8   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 61
Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 406
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 62  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 119
Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------A 456
            +A  ++  +E++ + N    H  L +    + E++  K++D      +          A
Sbjct: 120 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 177
Query: 457 MAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
              +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 222
Query: 516 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 223 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 346
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 5   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 58
Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 406
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 59  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 116
Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 458
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 117 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGA 174
Query: 459 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 175 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 219
Query: 516 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 220 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 264

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 346
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 3   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 56
Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 406
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 57  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 114
Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 458
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 115 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 459 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 173 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 217
Query: 516 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 218 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 112/288 (38%), Gaps = 43/288 (14%)
Query: 302 FSNVIGSSPIGTVYKGTLS-NGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKV-NHK 359
           F +VIG    G V K  +  +G+ +              K+    F  +++ L K+ +H 
Sbjct: 29  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS--KDDHRDFAGELEVLCKLGHHP 86
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMR 405
           N +NL+G CE        +  EYAP+G L + +                  +  L     
Sbjct: 87  NIINLLGACEHRGYL--YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 144
Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEI----AMAE 459
           L  A  +A  ++++ Q      H  L +  + + E+Y AK++D  LS   E+     M  
Sbjct: 145 LHFAADVARGMDYLSQ--KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGR 202
Query: 460 MXXXXXXXXXXXXXXXXXN--VYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP 516
           +                 N  V+++GVLL+E+V+ G  PY              L    P
Sbjct: 203 LPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYC-------GMTCAELYEKLP 255
Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
               ++  L+  DE     + +L++ C R  P +RP+   I   L  +
Sbjct: 256 QGYRLEKPLNCDDE-----VYDLMRQCWREKPYERPSFAQILVSLNRM 298

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 111/284 (39%), Gaps = 42/284 (14%)
Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-FRK 348
           L + E+E       + +G    G VY+G                  +D    +EV+ F K
Sbjct: 3   LDKWEMERTDITMKHKLGGGQYGEVYEGVWKK---YSLTVAVKTLKED---TMEVEEFLK 56
Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI 408
           +   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   + L +
Sbjct: 57  EAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVSAVVLLYM 114
Query: 409 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------AMA 458
           A  ++  +E++ + N    H  L +    + E++  K++D      +          A  
Sbjct: 115 ATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAHAGAKF 172
Query: 459 EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL 517
            +                 +V+ FGVLL+E+ T G  PY                G+ P 
Sbjct: 173 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGIDPS 217
Query: 518 QQF----VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
           Q +     D  +    E   E + EL+++C + +P  RP+  +I
Sbjct: 218 QVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 260

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 346
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 3   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 56
Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 406
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 57  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 114
Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 458
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 115 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 459 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 173 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 217
Query: 516 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 218 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 346
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 5   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 58
Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 406
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 59  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 116
Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 458
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 117 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 174
Query: 459 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 175 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 219
Query: 516 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 220 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 264

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 113/288 (39%), Gaps = 43/288 (14%)
Query: 302 FSNVIGSSPIGTVYKGTLS-NGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKV-NHK 359
           F +VIG    G V K  +  +G+ +              K+    F  +++ L K+ +H 
Sbjct: 19  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS--KDDHRDFAGELEVLCKLGHHP 76
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMR 405
           N +NL+G CE        +  EYAP+G L + +                  +  L     
Sbjct: 77  NIINLLGACEHRGYL--YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 134
Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAE---- 459
           L  A  +A  ++++ Q      H  L +  + + E+Y AK++D  LS   E+ + +    
Sbjct: 135 LHFAADVARGMDYLSQ--KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGR 192
Query: 460 --MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP 516
             +                 +V+++GVLL+E+V+ G  PY              L    P
Sbjct: 193 LPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYC-------GMTCAELYEKLP 245
Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
               ++  L+  DE     + +L++ C R  P +RP+   I   L  +
Sbjct: 246 QGYRLEKPLNCDDE-----VYDLMRQCWREKPYERPSFAQILVSLNRM 288

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 346
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 5   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 58
Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 406
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 59  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 116
Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 458
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 117 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 174
Query: 459 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 175 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 219
Query: 516 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 220 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 264

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 33/228 (14%)
Query: 341 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL 400
           ++ ++  ++I  L  + H + + L        P   +MV EYA  G LF++I  K+    
Sbjct: 51  DMHMRVEREISYLKLLRHPHIIKLYDVITT--PTDIVMVIEYA-GGELFDYIVEKKRMTE 107
Query: 401 DWGMRL--RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 458
           D G R   +I   + YC  H H+    I H  L    + L ++   K++D    N +   
Sbjct: 108 DEGRRFFQQIICAIEYC--HRHK----IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG 161
Query: 459 EMXXXX---------XXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAAD 509
                                       +V++ G++L+ M+ GRLP+  D+  + +    
Sbjct: 162 NFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPF--DDEFIPNLFKK 219
Query: 510 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             S V  +  F+ P   S           LI+  + ADP +R T+++I
Sbjct: 220 VNSCVYVMPDFLSPGAQS-----------LIRRMIVADPMQRITIQEI 256

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 114/286 (39%), Gaps = 42/286 (14%)
Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 346
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 8   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 61
Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 406
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   + L
Sbjct: 62  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVSAVVLL 119
Query: 407 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 458
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 120 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 459 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 222
Query: 516 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 557
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 223 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 107/286 (37%), Gaps = 50/286 (17%)
Query: 304 NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ----FRKKIDTLSKVNHK 359
            VIG    G VY G   +  +           K   +  E+Q    F ++   +  +NH 
Sbjct: 27  RVIGKGHFGVVYHGEYIDQAQ----NRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHP 82
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE-----SEHLDWGMRLRIAMGMAY 414
           N + LIG     E    +++  Y  +G L + I   +      + + +G  L++A GM Y
Sbjct: 83  NVLALIGIMLPPEGLPHVLL-PYMCHGDLLQFIRSPQRNPTVKDLISFG--LQVARGMEY 139
Query: 415 CLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMX 461
             E          H  L +    L E +  K++D     +I             A   + 
Sbjct: 140 LAEQK------FVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVK 193
Query: 462 XXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADYLSGVQPLQQ 519
                           +V++FGVLL+E++T G  PY  +D   L  + A      QP   
Sbjct: 194 WTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQP--- 250
Query: 520 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT 565
                     E   ++L ++++ C  ADP  RPT R +   + +I 
Sbjct: 251 ----------EYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIV 286

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 58/246 (23%)
Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR----------- 405
            HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++              
Sbjct: 85  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSS 142
Query: 406 -------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 458
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 143 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 196
Query: 459 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 506
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 197 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 246
Query: 507 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 562
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 247 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 300
Query: 563 EITGIT 568
            I  +T
Sbjct: 301 RIVALT 306

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 58/246 (23%)
Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR----------- 405
            HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++              
Sbjct: 84  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSS 141
Query: 406 -------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 458
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 142 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 195
Query: 459 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 506
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 196 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 245
Query: 507 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 562
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 246 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 299
Query: 563 EITGIT 568
            I  +T
Sbjct: 300 RIVALT 305

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 33  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 90
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 91  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 148
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 462
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 149 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAKLPVKW 202
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 203 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 261
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 262 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 293

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 58/246 (23%)
Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR----------- 405
            HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++              
Sbjct: 92  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSS 149
Query: 406 -------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 458
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 150 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 203
Query: 459 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 506
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 204 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 253
Query: 507 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 562
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 254 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 307
Query: 563 EITGIT 568
            I  +T
Sbjct: 308 RIVALT 313

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/290 (20%), Positives = 109/290 (37%), Gaps = 36/290 (12%)
Query: 302 FSNVIGSSPIGTVYKGTLS--NGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
              ++G    G+V +G L   +G  +              + +E +F  +   +   +H 
Sbjct: 38  LGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIE-EFLSEAACMKDFSHP 96
Query: 360 NFVNLIGFCEE------EEPFTRMMVFEYAPNGTLFEHIHIKES-EHLDWGMRLRIAMGM 412
           N + L+G C E       +P   +   +Y    T   +  ++   +H+     L+  + +
Sbjct: 97  NVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDI 156
Query: 413 AYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS---------FWNEIAMAEMXXX 463
           A  +E++   N    H  L +    L +D    ++D           ++ +  +A+M   
Sbjct: 157 ALGMEYLSNRN--FLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVK 214
Query: 464 --XXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQF 520
                           +V+ FGV ++E+ T G  PY    G       DYL     L+Q 
Sbjct: 215 WIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPY---PGVQNHEMYDYLLHGHRLKQ- 270
Query: 521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD 570
                    E+ L+ L E++ SC R DP  RPT   +   L ++    PD
Sbjct: 271 --------PEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD 312

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 58/246 (23%)
Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR----------- 405
            HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++              
Sbjct: 81  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSS 138
Query: 406 -------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 458
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 139 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 192
Query: 459 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 506
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 193 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 242
Query: 507 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 562
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 243 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 296
Query: 563 EITGIT 568
            I  +T
Sbjct: 297 RIVALT 302

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 53  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 110
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 111 NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 168
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 462
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 169 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 222
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 223 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 281
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 282 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 313

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 34  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 91
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 92  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 149
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 462
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 150 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 203
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 204 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 262
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 263 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 294

>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1 Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 105/275 (38%), Gaps = 43/275 (15%)
Query: 302 FSNVIGSSPIGTVYKG-TLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKN 360
           F   IG     TVYKG      VE+          +   K+   +F+++ + L  + H N
Sbjct: 30  FDIEIGRGSFKTVYKGLDTETTVEVAWCELQD---RKLTKSERQRFKEEAEXLKGLQHPN 86
Query: 361 FVNLIGFCEEEEPFTR--MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYC--- 415
            V      E      +  ++V E   +GTL          +L      +I +  ++C   
Sbjct: 87  IVRFYDSWESTVKGKKCIVLVTELXTSGTL--------KTYLKRFKVXKIKVLRSWCRQI 138
Query: 416 ---LEHMHQLNPPIAHNYLNSSAVHLTEDYAA-KLSDLSFWN------EIAMAEMXXXXX 465
              L+ +H   PPI H  L    + +T    + K+ DL            A+        
Sbjct: 139 LKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFXA 198
Query: 466 XXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY---LSGVQPLQQFVD 522
                       +VY FG    E  T   PY       ++ A  Y    SGV+P      
Sbjct: 199 PEXYEEKYDESVDVYAFGXCXLEXATSEYPY----SECQNAAQIYRRVTSGVKP------ 248
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
              +SFD+  +  + E+I+ C+R + ++R +++D+
Sbjct: 249 ---ASFDKVAIPEVKEIIEGCIRQNKDERYSIKDL 280

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 52  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 109
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 110 NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 167
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 462
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 168 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 221
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 222 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 280
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 281 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 312

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 90/246 (36%), Gaps = 58/246 (23%)
Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR----------- 405
            HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++              
Sbjct: 92  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSS 149
Query: 406 -------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 458
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 150 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 203
Query: 459 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 506
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 204 DXXKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 253
Query: 507 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 562
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 254 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 307
Query: 563 EITGIT 568
            I  +T
Sbjct: 308 RIVALT 313

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 26  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 83
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 84  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 141
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 462
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 142 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 195
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 196 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 254
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 255 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 286

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 32  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 89
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 90  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 147
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 462
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 148 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 201
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 202 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 260
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 261 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 292

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 33  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 90
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 91  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 148
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 462
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 149 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 202
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 203 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 261
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 262 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 293

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 34  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 91
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 92  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 149
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 462
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 150 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 203
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 204 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 262
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 263 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 294

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 58/246 (23%)
Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW-------------- 402
            HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++              
Sbjct: 77  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSS 134
Query: 403 ----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 458
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 135 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 188
Query: 459 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 506
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 189 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 238
Query: 507 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 562
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 239 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 292
Query: 563 EITGIT 568
            I  +T
Sbjct: 293 RIVALT 298

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 32/224 (14%)
Query: 345 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDW 402
           + +++I  L    H + + L         F   MV EY   G LF++I  H +  E    
Sbjct: 57  KIKREIQNLKLFRHPHIIKLYQVISTPTDF--FMVMEYVSGGELFDYICKHGRVEEMEAR 114
Query: 403 GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMXX 462
            +  +I   + YC  HM      + H  L    V L     AK++D    N ++  E   
Sbjct: 115 RLFQQILSAVDYCHRHM------VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLR 168
Query: 463 XX---------XXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 513
                                   ++++ GV+L+ ++ G LP+  D+  +         G
Sbjct: 169 TSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPF--DDEHVPTLFKKIRGG 226
Query: 514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
           V  + ++++ ++++           L+   ++ DP KR T++DI
Sbjct: 227 VFYIPEYLNRSVAT-----------LLMHMLQVDPLKRATIKDI 259

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 31  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 88
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 89  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 146
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 462
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 147 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 200
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 201 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 259
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 260 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 291

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 29  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 86
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 87  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 144
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 462
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 145 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 198
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 199 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 257
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 258 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 289

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 58/246 (23%)
Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW-------------- 402
            HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++              
Sbjct: 92  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSS 149
Query: 403 ----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 458
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 150 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 203
Query: 459 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 506
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 204 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 253
Query: 507 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 562
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 254 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 307
Query: 563 EITGIT 568
            I  +T
Sbjct: 308 RIVALT 313

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 32/224 (14%)
Query: 345 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDW 402
           + +++I  L    H + + L         F   MV EY   G LF++I  H +  E    
Sbjct: 57  KIKREIQNLKLFRHPHIIKLYQVISTPTDF--FMVMEYVSGGELFDYICKHGRVEEMEAR 114
Query: 403 GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-- 460
            +  +I   + YC  HM      + H  L    V L     AK++D    N ++  E   
Sbjct: 115 RLFQQILSAVDYCHRHM------VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLR 168
Query: 461 -------XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 513
                                   ++++ GV+L+ ++ G LP+  D+  +         G
Sbjct: 169 DSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPF--DDEHVPTLFKKIRGG 226
Query: 514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
           V  + ++++ ++++           L+   ++ DP KR T++DI
Sbjct: 227 VFYIPEYLNRSVAT-----------LLMHMLQVDPLKRATIKDI 259

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 89/245 (36%), Gaps = 58/245 (23%)
Query: 358 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR------------ 405
           HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++               
Sbjct: 134 HKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSK 191
Query: 406 ------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 459
                  ++A GM Y        +    H  L +  V +TED   K++D     +I   +
Sbjct: 192 DLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 245
Query: 460 MXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 507
                                        +V++FGVLL+E+ T G  PY           
Sbjct: 246 YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY----------- 294
Query: 508 ADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILRE 563
                GV P+++           ++       L  +++ C  A P +RPT + +   L  
Sbjct: 295 ----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 349
Query: 564 ITGIT 568
           I  +T
Sbjct: 350 IVALT 354

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 101/240 (42%), Gaps = 40/240 (16%)
Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH----IKESEHLD 401
           F  + + + ++ H+  V L     +E  +   ++ EY  NG+L + +     IK + +  
Sbjct: 55  FLAEANLMKQLQHQRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKL 111
Query: 402 WGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-- 459
             M  +IA GMA+  E  +       H  L ++ + +++  + K++D      I  AE  
Sbjct: 112 LDMAAQIAEGMAFIEERNY------IHRDLRAANILVSDTLSCKIADFGLARLIEDAEXT 165
Query: 460 --------MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 508
                   +                 +V++FG+LL E+VT GR+PY  + +   +++   
Sbjct: 166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 225
Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT 568
            Y        + V P      +   E L +L++ C +  PE RPT   + ++L +    T
Sbjct: 226 GY--------RMVRP------DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 271

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 37/226 (16%)
Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH------IKESEHL 400
           R+++  L+ + H N V      EE       +V +Y   G LF+ I+       +E + L
Sbjct: 71  RREVAVLANMKHPNIVQYRESFEENGSL--YIVMDYCEGGDLFKRINAQKGVLFQEDQIL 128
Query: 401 DWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN------E 454
           DW +++ +A      L+H+H  +  I H  + S  + LT+D   +L D           E
Sbjct: 129 DWFVQICLA------LKHVH--DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVE 180
Query: 455 IAMAEMXXXXXXXXXXXXXXXXXN---VYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL 511
           +A A +                 N   ++  G +L+E+ T  L +  + GS+++     +
Sbjct: 181 LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCT--LKHAFEAGSMKNLVLKII 238
Query: 512 SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
           SG  P      P    +  +    L  L+    + +P  RP++  I
Sbjct: 239 SGSFP------PVSLHYSYD----LRSLVSQLFKRNPRDRPSVNSI 274

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 26/160 (16%)
Query: 305 VIGSSPIGTVYKGTLSN---GVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNF 361
           +IG    G VYKG+L      V++           +          K I  +  + H N 
Sbjct: 20  LIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINE----------KNIYRVPLMEHDNI 69
Query: 362 VNLIGFCEEEEPFTRM---MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH 418
              I   E      RM   +V EY PNG+L +++ +  S   DW    R+A  +   L +
Sbjct: 70  ARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTS---DWVSSCRLAHSVTRGLAY 126
Query: 419 MH-------QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF 451
           +H          P I+H  LNS  V +  D    +SD   
Sbjct: 127 LHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGL 166

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 35  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 92
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM + 
Sbjct: 93  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKFL 150
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 462
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 151 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAKLPVKW 204
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 205 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 263
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 264 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 295

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 93  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 150
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM + 
Sbjct: 151 NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKFL 208
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 462
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 209 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKW 262
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 263 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 321
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 322 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 353

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 34  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 91
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM + 
Sbjct: 92  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKFL 149
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 462
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 150 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKW 203
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 204 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 262
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 263 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 294

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 34  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 91
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM + 
Sbjct: 92  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKFL 149
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 462
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 150 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKW 203
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 204 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 262
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 263 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 294

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 105/282 (37%), Gaps = 40/282 (14%)
Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 359
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 35  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 92
Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 415
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM + 
Sbjct: 93  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKFL 150
Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMXX------------- 462
                  +    H  L +    L E +  K++D     ++   E                
Sbjct: 151 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKW 204
Query: 463 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 205 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 263
Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 264 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 295

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	592
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	4e-54
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-52
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-51
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	6e-46
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-42
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-41
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-39
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	4e-38
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	8e-36
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-34
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-34
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-34
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	7e-32
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	1e-31
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	5e-31
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	6e-31
3q4u_A	301	Activin receptor type-1; structural genomics conso	6e-31
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	3e-30
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	4e-24
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	8e-23
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	3e-21
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-21
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-21
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	5e-21
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-20
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	1e-20
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	5e-20
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	8e-20
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	8e-20
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	9e-20
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	1e-19
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-19
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-19
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-19
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-19
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-19
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-08
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	6e-19
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	8e-19
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-18
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	1e-18
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-18
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-11
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-18
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	2e-18
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	3e-18
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-18
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	3e-18
4aoj_A	329	High affinity nerve growth factor receptor; transf	4e-18
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	4e-18
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	5e-18
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	9e-18
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-17
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-17
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-17
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	2e-17
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	3e-17
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	3e-17
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	6e-17
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	6e-17
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	7e-17
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-16
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	2e-16
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-16
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	4e-16
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	5e-16
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	7e-16
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	8e-16
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	1e-15
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-15
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	3e-15
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	3e-15
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	6e-15
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	7e-15
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	1e-14
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-14
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-14
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-14
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	4e-14
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	5e-14
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-13
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-13
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	4e-13
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	3e-12
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-12
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-12
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-11
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	3e-11
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	4e-11
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-11
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	5e-11
3uqc_A	286	Probable conserved transmembrane protein; structur	7e-11
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	8e-11
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-10
3ork_A	311	Serine/threonine protein kinase; structural genomi	2e-10
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-10
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-05
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	9e-10
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-09
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-09
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-04
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	2e-09
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	3e-09
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-09
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-09
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	6e-09
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	9e-09
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-08
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-08
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	3e-08
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	4e-08
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-08
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	5e-08
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	8e-08
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	1e-07
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-07
3bhy_A	283	Death-associated protein kinase 3; death associate	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	6e-07
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	1e-06
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	1e-06
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-06
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	1e-06
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-06
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	3e-06
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-06
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	4e-06
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	4e-06
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	5e-06
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	6e-06
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	8e-06
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	1e-05
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-05
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-04
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-05
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	3e-05
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	3e-05
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	3e-05
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	3e-05
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-04
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	2e-04
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  185 bits (472), Expect = 4e-54
 Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 43/302 (14%)

Query: 293 SELEAACEDFS--------NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEV 344
            EL+    +F         N +G    G VYKG + N   +AV  ++        + L+ 
Sbjct: 18  YELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDIT-TEELKQ 75

Query: 345 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWG 403
           QF ++I  ++K  H+N V L+GF  + +     +V+ Y PNG+L + +  +  +  L W 
Sbjct: 76  QFDQEIKVMAKCQHENLVELLGFSSDGD--DLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133

Query: 404 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT 463
           MR +IA G A  +  +H       H  + S+ + L E + AK+SD  F     +A  +  
Sbjct: 134 MRCKIAQGAANGINFLH--ENHHIHRDIKSANILLDEAFTAKISD--F----GLARASEK 185

Query: 464 SKK--LSS---------APSA-----SLESNVYNFGVLLFEMVTGRLPYLVDNG----SL 503
             +  ++S         AP A     + +S++Y+FGV+L E++TG     VD       L
Sbjct: 186 FAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPA--VDEHREPQLL 243

Query: 504 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            D   +     + ++ ++D  ++  D   +E +  +   C+     KRP ++ +  +L+E
Sbjct: 244 LDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQE 303

Query: 564 IT 565
           +T
Sbjct: 304 MT 305

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  181 bits (462), Expect = 2e-52
 Identities = 80/298 (26%), Positives = 147/298 (49%), Gaps = 43/298 (14%)

Query: 293 SELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKI 350
            EL+ A ++FS  N++G    G VYKG L++G  +AV  +     +      E+QF+ ++
Sbjct: 23  RELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQ----GGELQFQTEV 78

Query: 351 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH--IKESEHLDWGMRLRI 408
           + +S   H+N + L GFC       R++V+ Y  NG++   +    +    LDW  R RI
Sbjct: 79  EMISMAVHRNLLRLRGFCMTPT--ERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 136

Query: 409 AMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNE---------IA 456
           A+G A  L ++H   +P I H  + ++ + L E++ A + D  L+   +         + 
Sbjct: 137 ALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVR 196

Query: 457 -----MA-EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGR------LPYLVDNGSLE 504
                +A E  +T K       +S +++V+ +GV+L E++TG+           D+  L 
Sbjct: 197 GTIGHIAPEYLSTGK-------SSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLL 249

Query: 505 DWAADYLSGVQPLQQFVDPTL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
           DW    L   + L+  VD  L  ++ +E++E L ++   C ++ P +RP M ++  +L
Sbjct: 250 DWVKGLLKEKK-LEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 306

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  179 bits (456), Expect = 1e-51
 Identities = 80/304 (26%), Positives = 133/304 (43%), Gaps = 52/304 (17%)

Query: 293 SELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKI 350
            +LE A  +F    +IG    G VYKG L +G ++A+   +  S          +F  +I
Sbjct: 32  VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPES-----SQGIEEFETEI 86

Query: 351 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH--IKESEHLDWGMRLRI 408
           +TLS   H + V+LIGFC+E      +++++Y  NG L  H++     +  + W  RL I
Sbjct: 87  ETLSFCRHPHLVSLIGFCDERN--EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEI 144

Query: 409 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAE------- 459
            +G A  L ++H     I H  + S  + L E++  K++D  +S   +            
Sbjct: 145 CIGAARGLHYLH--TRAIIHRDVKSINILLDENFVPKITDFGIS---KKGTELDQTHLST 199

Query: 460 --------MA---ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG------S 502
                   +        +L+       +S+VY+FGV+LFE++  R    +         +
Sbjct: 200 VVKGTLGYIDPEYFIKGRLTE------KSDVYSFGVVLFEVLCARSA--IVQSLPREMVN 251

Query: 503 LEDWAADYLSGVQPLQQFVDPTL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
           L +WA +  +  Q L+Q VDP L      E L   G+    C+    E RP+M D+   L
Sbjct: 252 LAEWAVESHNNGQ-LEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKL 310

Query: 562 REIT 565
               
Sbjct: 311 EYAL 314

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  162 bits (412), Expect = 6e-46
 Identities = 65/282 (23%), Positives = 120/282 (42%), Gaps = 44/282 (15%)

Query: 301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 360
           +F   +  +  G ++KG    G +I V    V   +DW       F ++   L   +H N
Sbjct: 13  NFLTKLNENHSGELWKGRW-QGNDIVV---KVLKVRDWSTRKSRDFNEECPRLRIFSHPN 68

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH 420
            + ++G C+        ++  + P G+L+  +H   +  +D    ++ A+ MA  +  +H
Sbjct: 69  VLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH 128

Query: 421 QLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSF------------WNEIAMA-EMAATSK 465
            L P I  + LNS +V + ED  A++S   + F            W    +A E      
Sbjct: 129 TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAW----VAPEA----- 179

Query: 466 KLSSAPSASLE--SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP 523
            L   P  +    +++++F VLL+E+VT  +P+      L +        ++ L+    P
Sbjct: 180 -LQKKPEDTNRRSADMWSFAVLLWELVTREVPF----ADLSNMEIGMKVALEGLR----P 230

Query: 524 TL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           T+           + +L+K C+  DP KRP    I  IL ++
Sbjct: 231 TIPPGISPH----VSKLMKICMNEDPAKRPKFDMIVPILEKM 268

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  155 bits (393), Expect = 1e-42
 Identities = 50/313 (15%), Positives = 105/313 (33%), Gaps = 54/313 (17%)

Query: 293 SELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKI 350
             L           V      G V+K  L     +AV    +   + W      Q   ++
Sbjct: 17  ENLYFQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQDKQSW------QNEYEV 69

Query: 351 DTLSKVNHKNFVNLIGFCEEEEPFT--RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI 408
            +L  + H+N +  IG  +          ++  +   G+L + +    +  + W     I
Sbjct: 70  YSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLK---ANVVSWNELCHI 126

Query: 409 AMGMAYCLEHMHQ--------LNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMA 458
           A  MA  L ++H+          P I+H  + S  V L  +  A ++D  L+   E   +
Sbjct: 127 AETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKS 186

Query: 459 EMAATSKK----------LSSAPSASLESN----VYNFGVLLFEMVTGRLPYLVDNGSLE 504
                 +           L  A +   ++     +Y  G++L+E+ +        +G ++
Sbjct: 187 AGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAA---DGPVD 243

Query: 505 DWAADYLSGVQP-----------LQQFVDPTLSS--FDEEQLETLGELIKSCVRADPEKR 551
           ++   +   +             + +   P L         +  L E I+ C   D E R
Sbjct: 244 EYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEAR 303

Query: 552 PTMRDIAAILREI 564
            +   +   + ++
Sbjct: 304 LSAGCVGERITQM 316

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  150 bits (380), Expect = 3e-41
 Identities = 66/301 (21%), Positives = 129/301 (42%), Gaps = 45/301 (14%)

Query: 285 TGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAV--ASVSVASAKDWPKN 341
           + +P L  +E+E     +   IG    G V+KG  + +   +A+    +  +  +     
Sbjct: 11  SRLPTLADNEIE-----YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIE 65

Query: 342 LEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD 401
              +F++++  +S +NH N V L G      P    MV E+ P G L+  +   ++  + 
Sbjct: 66  KFQEFQREVFIMSNLNHPNIVKLYGLMHN--PP--RMVMEFVPCGDLYHRLL-DKAHPIK 120

Query: 402 WGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNS-----SAVHLTEDYAAKLSD--LS-FWN 453
           W ++LR+ + +A  +E+M   NPPI H  L S      ++       AK++D  LS    
Sbjct: 121 WSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSV 180

Query: 454 EIAMAE------MA----ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL 503
                       MA       ++  +      +++ Y+F ++L+ ++TG  P+       
Sbjct: 181 HSVSGLLGNFQWMAPETIGAEEESYT-----EKADTYSFAMILYTILTGEGPF----DEY 231

Query: 504 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
                 +++ +   ++ + PT+    E+    L  +I+ C   DP+KRP    I   L E
Sbjct: 232 SYGKIKFINMI--REEGLRPTIP---EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSE 286

Query: 564 I 564
           +
Sbjct: 287 L 287

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  145 bits (368), Expect = 2e-39
 Identities = 67/299 (22%), Positives = 123/299 (41%), Gaps = 62/299 (20%)

Query: 291 KRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKI 350
              +L          IG+   GTV++    +G ++AV    +   +D+      +F +++
Sbjct: 35  PWCDLN-----IKEKIGAGSFGTVHRAEW-HGSDVAV---KILMEQDFHAERVNEFLREV 85

Query: 351 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES-EHLDWGMRLRIA 409
             + ++ H N V  +G   +       +V EY   G+L+  +H   + E LD   RL +A
Sbjct: 86  AIMKRLRHPNIVLFMGAVTQPPNL--SIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMA 143

Query: 410 MGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKL 467
             +A  + ++H  NPPI H  L S  + + + Y  K+ D  LS          A+T    
Sbjct: 144 YDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLS-------RLKASTFLSS 196

Query: 468 SS--------AP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 513
            S        AP       ++ +S+VY+FGV+L+E+ T + P+                 
Sbjct: 197 KSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPW---------------GN 241

Query: 514 VQPLQQFVD-------PTL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           + P Q             +  + + +    +  +I+ C   +P KRP+   I  +LR +
Sbjct: 242 LNPAQVVAAVGFKCKRLEIPRNLNPQ----VAAIIEGCWTNEPWKRPSFATIMDLLRPL 296

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  141 bits (358), Expect = 4e-38
 Identities = 60/302 (19%), Positives = 109/302 (36%), Gaps = 61/302 (20%)

Query: 301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 360
           +   V+G    G V K       ++A+  +         ++    F  ++  LS+VNH N
Sbjct: 11  EVEEVVGRGAFGVVCKAKW-RAKDVAIKQIE-------SESERKAFIVELRQLSRVNHPN 62

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES-EHLDWGMRLRIAMGMAYCLEHM 419
            V L G C    P    +V EYA  G+L+  +H  E   +      +   +  +  + ++
Sbjct: 63  IVKLYGACLN--PV--CLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYL 118

Query: 420 HQLNP-PIAHNYLNSSAVHLTEDY-AAKLSD--LS-FWNEIAMAE------MA------- 461
           H + P  + H  L    + L       K+ D   +                MA       
Sbjct: 119 HSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGS 178

Query: 462 ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----P 516
             S+K           +V+++G++L+E++T R P+      +   A   +  V      P
Sbjct: 179 NYSEK----------CDVFSWGIILWEVITRRKPF----DEIGGPAFRIMWAVHNGTRPP 224

Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 576
           L + +   +             L+  C   DP +RP+M +I  I+  +    P    P  
Sbjct: 225 LIKNLPKPIE-----------SLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGADEPLQ 273

Query: 577 SP 578
            P
Sbjct: 274 YP 275

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  134 bits (339), Expect = 8e-36
 Identities = 62/296 (20%), Positives = 113/296 (38%), Gaps = 51/296 (17%)

Query: 291 KRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKI 350
             +EL         +IG    G VY+     G E+AV +      +D  + +E   R++ 
Sbjct: 5   DFAELT-----LEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIE-NVRQEA 57

Query: 351 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAM 410
              + + H N + L G C +E      +V E+A  G L   +     + +   + +  A+
Sbjct: 58  KLFAMLKHPNIIALRGVCLKEPNL--CLVMEFARGGPLNRVLS---GKRIPPDILVNWAV 112

Query: 411 GMAYCLEHMHQLNP-PIAH------NYL--NSSAVHLTEDYAAKLSD--LS-FWNEIAMA 458
            +A  + ++H     PI H      N L           +   K++D  L+  W+     
Sbjct: 113 QIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKM 172

Query: 459 EMAATSK-----KLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 513
             A          + ++   S  S+V+++GVLL+E++TG +P+              + G
Sbjct: 173 SAAGAYAWMAPEVIRASMF-SKGSDVWSYGVLLWELLTGEVPF------------RGIDG 219

Query: 514 VQPLQQFVDPTL-----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           +          L     S+  E       +L++ C   DP  RP+  +I   L  I
Sbjct: 220 LAVAYGVAMNKLALPIPSTCPEP----FAKLMEDCWNPDPHSRPSFTNILDQLTTI 271

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  131 bits (332), Expect = 1e-34
 Identities = 68/299 (22%), Positives = 114/299 (38%), Gaps = 61/299 (20%)

Query: 292 RSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKID 351
             ++          IGS   GTVYKG     V  AV  ++V             F+ ++ 
Sbjct: 23  DGQIT-----VGQRIGSGSFGTVYKGKWHGDV--AVKMLNV---TAPTPQQLQAFKNEVG 72

Query: 352 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAM- 410
            L K  H N +  +G+          +V ++    +L+ H+H  E+   +    + IA  
Sbjct: 73  VLRKTRHVNILLFMGYSTAP-QL--AIVTQWCEGSSLYHHLHASET-KFEMKKLIDIARQ 128

Query: 411 ---GMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSK 465
              GM Y    +H  +  I H  L S+ + L ED   K+ D  L+               
Sbjct: 129 TARGMDY----LHAKS--IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQL 182

Query: 466 KLSS---APSA---------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 513
             S    AP           S +S+VY FG++L+E++TG+LPY               S 
Sbjct: 183 SGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPY---------------SN 227

Query: 514 VQPLQQFVD--------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
           +    Q ++        P LS       + +  L+  C++   ++RP+   I A + E+
Sbjct: 228 INNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEEL 286

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  132 bits (333), Expect = 2e-34
 Identities = 71/327 (21%), Positives = 118/327 (36%), Gaps = 61/327 (18%)

Query: 293 SELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKI 350
           SE     ++     +IG    G VYKG+L +   +AV   S A+ +++         K I
Sbjct: 6   SEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNF------INEKNI 58

Query: 351 DTLSKVNHKNFVNLIGFCEEEEPFTR---MMVFEYAPNGTLFEHIHIKESEHLDWGMRLR 407
             +  + H N    I   E      R   ++V EY PNG+L +++        DW    R
Sbjct: 59  YRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLS---LHTSDWVSSCR 115

Query: 408 IAMGMAYCLEHMH-------QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------- 451
           +A  +   L ++H          P I+H  LNS  V +  D    +SD            
Sbjct: 116 LAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRL 175

Query: 452 ----WNEIA----------MA-EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPY 496
                 + A          MA E+   +  L    SA  + ++Y  G++ +E+   R   
Sbjct: 176 VRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFM-RCTD 234

Query: 497 LVDNGSLEDWAADYLSGVQPLQQFVD-----------PTLS---SFDEEQLETLGELIKS 542
           L    S+ ++   + + V     F D           P        +   + +L E I+ 
Sbjct: 235 LFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIED 294

Query: 543 CVRADPEKRPTMRDIAAILREITGITP 569
           C   D E R T +     + E+  I  
Sbjct: 295 CWDQDAEARLTAQXAEERMAELMMIWE 321

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  124 bits (313), Expect = 7e-32
 Identities = 59/302 (19%), Positives = 104/302 (34%), Gaps = 55/302 (18%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKK 349
            + S+L         V+G    G   K T        +    +     + +  +  F K+
Sbjct: 7   FRPSDLI-----HGEVLGKGCFGQAIKVTH-RETGEVMV---MKELIRFDEETQRTFLKE 57

Query: 350 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR-- 407
           +  +  + H N +  IG   +++      + EY   GTL   I         W  R+   
Sbjct: 58  VKVMRCLEHPNVLKFIGVLYKDKRL--NFITEYIKGGTLRGIIK-SMDSQYPWSQRVSFA 114

Query: 408 --IAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMA 461
             IA GMAY    +H +N  I H  LNS    + E+    ++D  L+    +E    E  
Sbjct: 115 KDIASGMAY----LHSMN--IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGL 168

Query: 462 ATSKKLSS-------------APSA------SLESNVYNFGVLLFEMVTGRLPYLVDNGS 502
            + KK                AP          + +V++FG++L E++            
Sbjct: 169 RSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNAD------ 222

Query: 503 LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 562
             D+    +     ++ F+D            +   +   C   DPEKRP+   +   L 
Sbjct: 223 -PDYLPRTMDFGLNVRGFLDRYCP---PNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLE 278

Query: 563 EI 564
            +
Sbjct: 279 TL 280

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  124 bits (312), Expect = 1e-31
 Identities = 47/301 (15%), Positives = 96/301 (31%), Gaps = 58/301 (19%)

Query: 291 KRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKI 350
              +LE        +IG    G VY G         VA + +   +   ++    F++++
Sbjct: 31  PFEQLE-----IGELIGKGRFGQVYHGRWHG----EVA-IRLIDIERDNEDQLKAFKREV 80

Query: 351 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAM 410
               +  H+N V  +G C         ++       TL+  +   +   LD     +IA 
Sbjct: 81  MAYRQTRHENVVLFMGACMSPPHL--AIITSLCKGRTLYSVVRDAK-IVLDVNKTRQIAQ 137

Query: 411 ----GMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD-----------LSFWNEI 455
               GM Y    +H     I H  L S  V   ++    ++D                + 
Sbjct: 138 EIVKGMGY----LHA--KGILHKDLKSKNV-FYDNGKVVITDFGLFSISGVLQAGRREDK 190

Query: 456 AMAE------MA------ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL 503
              +      +A       +          S  S+V+  G + +E+     P+     + 
Sbjct: 191 LRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPF----KTQ 246

Query: 504 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
              A  +  G           +        + + +++  C   + E+RPT   +  +L +
Sbjct: 247 PAEAIIWQMGTGMKPNLSQIGMG-------KEISDILLFCWAFEQEERPTFTKLMDMLEK 299

Query: 564 I 564
           +
Sbjct: 300 L 300

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  122 bits (308), Expect = 6e-31
 Identities = 59/304 (19%), Positives = 113/304 (37%), Gaps = 56/304 (18%)

Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 361
               IG    G V+ G    G ++AV          W          +I     + H+N 
Sbjct: 41  MVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTTEEASW------FRETEIYQTVLMRHENI 93

Query: 362 VNLIGFCEEEEPFTR--MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 419
           +  I    +         ++ +Y  NG+L++++    S  LD    L++A      L H+
Sbjct: 94  LGFIAADIKGTGSWTQLYLITDYHENGSLYDYLK---STTLDAKSMLKLAYSSVSGLCHL 150

Query: 420 H------QLNPPIAHNYLNSSAVHLTEDYAAKLSDL---------SFWNEIA-------- 456
           H      Q  P IAH  L S  + + ++    ++DL         +   +I         
Sbjct: 151 HTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTK 210

Query: 457 --MA-EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY--L 511
             M  E+   S   +   S  + +++Y+FG++L+E+    +      G +E++   Y  L
Sbjct: 211 RYMPPEVLDESLNRNHFQS-YIMADMYSFGLILWEVARRCVS----GGIVEEYQLPYHDL 265

Query: 512 SGVQP-LQQFVD--------PTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAI 560
               P  +   +        P+  +    +E L  +G+L+  C   +P  R T   +   
Sbjct: 266 VPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKT 325

Query: 561 LREI 564
           L ++
Sbjct: 326 LAKM 329

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  121 bits (306), Expect = 6e-31
 Identities = 56/303 (18%), Positives = 106/303 (34%), Gaps = 54/303 (17%)

Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 361
               +G    G V++G+   G  +AV   S    K W          ++     + H+N 
Sbjct: 12  LLECVGKGRYGEVWRGSW-QGENVAVKIFSSRDEKSW------FRETELYNTVMLRHENI 64

Query: 362 VNLIGFC--EEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 419
           +  I              ++  Y   G+L++++       LD    LRI + +A  L H+
Sbjct: 65  LGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQ---LTTLDTVSCLRIVLSIASGLAHL 121

Query: 420 H------QLNPPIAHNYLNSSAVHLTEDYAAKLSDL----SFWNEIAMAEMAATSKK--- 466
           H      Q  P IAH  L S  + + ++    ++DL             ++    +    
Sbjct: 122 HIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTK 181

Query: 467 -------LSSAPSASLESN-----VYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY--LS 512
                  L          +     ++ FG++L+E+    +      G +ED+   +  + 
Sbjct: 182 RYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSN----GIVEDYKPPFYDVV 237

Query: 513 GVQP-LQQFVD--------PTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
              P  +            P + +  F +  L +L +L+K C   +P  R T   I   L
Sbjct: 238 PNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTL 297

Query: 562 REI 564
            +I
Sbjct: 298 TKI 300

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  120 bits (303), Expect = 3e-30
 Identities = 56/303 (18%), Positives = 109/303 (35%), Gaps = 54/303 (17%)

Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 361
               IG    G V++G    G E+AV   S    + W          +I     + H+N 
Sbjct: 46  LQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSW------FREAEIYQTVMLRHENI 98

Query: 362 VNLIGFCEEEEPFTR--MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 419
           +  I    ++        +V +Y  +G+LF++++      +     +++A+  A  L H+
Sbjct: 99  LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHL 155

Query: 420 H------QLNPPIAHNYLNSSAVHLTEDYAAKLSDLS----FWNEIAMAEMAATSKK--- 466
           H      Q  P IAH  L S  + + ++    ++DL       +     ++A   +    
Sbjct: 156 HMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTK 215

Query: 467 --------LSSAPSASLESN----VYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY--LS 512
                     S      ES     +Y  G++ +E+           G  ED+   Y  L 
Sbjct: 216 RYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIG----GIHEDYQLPYYDLV 271

Query: 513 GVQP-LQQFVD--------PTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
              P +++           P + +     E L  + ++++ C  A+   R T   I   L
Sbjct: 272 PSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTL 331

Query: 562 REI 564
            ++
Sbjct: 332 SQL 334

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score =  103 bits (259), Expect = 4e-24
 Identities = 75/330 (22%), Positives = 118/330 (35%), Gaps = 81/330 (24%)

Query: 272 ATGLSGQLQKAFVTGVPK----LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAV 327
              L+ +        VPK    L   +L          IG    G V+ G L       V
Sbjct: 89  QQPLTKKSGVVLHRAVPKDKWVLNHEDLV-----LGEQIGRGNFGEVFSGRL-RADNTLV 142

Query: 328 ASVSVASAK-DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNG 386
           A   V S +   P +L+ +F ++   L + +H N V LIG C +++P    +V E    G
Sbjct: 143 A---VKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPI--YIVMELVQGG 197

Query: 387 TLFEHIHIKESEHLDWGMRLR----IAMGMAYCLEHMHQLNPPIAHNYLNSSAVH----- 437
                +   E   L     L+     A GM Y LE                  +H     
Sbjct: 198 DFLTFLR-TEGARLRVKTLLQMVGDAAAGMEY-LESK---------CC-----IHRDLAA 241

Query: 438 ----LTEDYAAKLSD--LSFWNEIAMAEMAATSKKLS---SAPSA------SLESNVYNF 482
               +TE    K+SD  +S      +   +   +++    +AP A      S ES+V++F
Sbjct: 242 RNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSF 301

Query: 483 GVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD------PTLSSFDEEQLET 535
           G+LL+E  + G  PY              LS  Q  +          P L        + 
Sbjct: 302 GILLWETFSLGASPY------------PNLSNQQTREFVEKGGRLPCPELCP------DA 343

Query: 536 LGELIKSCVRADPEKRPTMRDIAAILREIT 565
           +  L++ C   +P +RP+   I   L+ I 
Sbjct: 344 VFRLMEQCWAYEPGQRPSFSTIYQELQSIR 373

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 98.8 bits (247), Expect = 8e-23
 Identities = 55/312 (17%), Positives = 109/312 (34%), Gaps = 84/312 (26%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-DWPKNLEVQFRK 348
           LK +E +        V+GS   GTVYKG      E     V++   +         +   
Sbjct: 12  LKETEFK-----KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 66

Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGM 404
           +   ++ V++ +   L+G C         ++ +  P G L +++  +  +++        
Sbjct: 67  EAYVMASVDNPHVCRLLGICLTSTV---QLITQLMPFGCLLDYVR-EHKDNIGSQYLLNW 122

Query: 405 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSFWN 453
            ++IA GM Y LE                  VH         +      K++D  L+   
Sbjct: 123 CVQIAKGMNY-LEDR---------RL-----VHRDLAARNVLVKTPQHVKITDFGLAKLL 167

Query: 454 EIAMAEMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPY------- 496
                E  A   K+     A  +      + +S+V+++GV ++E++T G  PY       
Sbjct: 168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE 227

Query: 497 ---LVDNGS-LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP 552
              +++ G  L           QP                   +  +++ C   D + RP
Sbjct: 228 ISSILEKGERLP----------QP-------------PICTIDVYMIMRKCWMIDADSRP 264

Query: 553 TMRDIAAILREI 564
             R++     ++
Sbjct: 265 KFRELIIEFSKM 276

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 66/315 (20%), Positives = 115/315 (36%), Gaps = 72/315 (22%)

Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVA--SAKDWPKNLEV 344
            K++  +L      F+  +G      ++KG     G    +    V         +N   
Sbjct: 3   HKIRNEDLI-----FNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSE 57

Query: 345 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE-HLDW- 402
            F +    +SK++HK+ V   G C   +    ++V E+   G+L  ++   ++  ++ W 
Sbjct: 58  SFFEAASMMSKLSHKHLVLNYGVCVCGDEN--ILVQEFVKFGSLDTYLKKNKNCINILWK 115

Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAH------NYL--NSSAVHLTEDYAAKLSD--LSF 451
             +  ++A  M + LE        + H      N L               KLSD  +S 
Sbjct: 116 LEVAKQLAAAMHF-LEENT-----LIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISI 169

Query: 452 W---NEIA------MA-EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDN 500
                +I       +  E     K L+ A      ++ ++FG  L+E+ + G  P     
Sbjct: 170 TVLPKDILQERIPWVPPECIENPKNLNLA------TDKWSFGTTLWEICSGGDKPL---- 219

Query: 501 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE-----TLGELIKSCVRADPEKRPTMR 555
                 A   L   + L QF +      D  QL       L  LI +C+  +P+ RP+ R
Sbjct: 220 -----SA---LDSQRKL-QFYE------DRHQLPAPKAAELANLINNCMDYEPDHRPSFR 264

Query: 556 DIAAILREITGITPD 570
            I   L  +   TPD
Sbjct: 265 AIIRDLNSL--FTPD 277

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 61/301 (20%), Positives = 110/301 (36%), Gaps = 62/301 (20%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ-FRK 348
            K +EL         V+GS   GTV+KG      E     V +   +D       Q    
Sbjct: 10  FKETELR-----KLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTD 64

Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGM 404
            +  +  ++H + V L+G C         +V +Y P G+L +H+  +    L        
Sbjct: 65  HMLAIGSLDHAHIVRLLGLCPGSSL---QLVTQYLPLGSLLDHVR-QHRGALGPQLLLNW 120

Query: 405 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSFWN 453
            ++IA GM Y LE                  VH         L      +++D  ++   
Sbjct: 121 GVQIAKGMYY-LEEH---------GM-----VHRNLAARNVLLKSPSQVQVADFGVADLL 165

Query: 454 EIAMAEMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSL 503
                ++  +  K      A  +      + +S+V+++GV ++E++T G  PY      L
Sbjct: 166 PPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPY--AGLRL 223

Query: 504 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            +   D L   + L Q   P + +        +  ++  C   D   RPT +++A     
Sbjct: 224 AE-VPDLLEKGERLAQ---PQICT------IDVYMVMVKCWMIDENIRPTFKELANEFTR 273

Query: 564 I 564
           +
Sbjct: 274 M 274

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 94.0 bits (234), Expect = 3e-21
 Identities = 49/291 (16%), Positives = 98/291 (33%), Gaps = 43/291 (14%)

Query: 312 GTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE 370
             V     L +G   A+  +     +D       + +++ D     NH N + L+ +C  
Sbjct: 43  SYVDLVEGLHDGHFYALKRILCHEQQD-----REEAQREADMHRLFNHPNILRLVAYCLR 97

Query: 371 EEPFTRM--MVFEYAPNGTLFEHI--HIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPI 426
           E        ++  +   GTL+  I     +   L     L + +G+   LE +H      
Sbjct: 98  ERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA--KGY 155

Query: 427 AHNYLNSSAVHLTEDYAAKLSDL----------SFWNEIAMAEMAATSK----------- 465
           AH  L  + + L ++    L DL              +    +  A  +           
Sbjct: 156 AHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELF 215

Query: 466 KLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL 525
            + S       ++V++ G +L+ M+ G  PY +     +  A    + +        P  
Sbjct: 216 SVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSI------PQS 269

Query: 526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 576
                     L +L+ S +  DP +RP +  + + L  +    P     ++
Sbjct: 270 PRHSSA----LWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQHTTQI 316

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 93.2 bits (232), Expect = 5e-21
 Identities = 56/324 (17%), Positives = 102/324 (31%), Gaps = 91/324 (28%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKK 349
            +   L+     + + +G    G+V         +   A V+V   +    + +  F+++
Sbjct: 20  FEERHLK-----YISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQRE 74

Query: 350 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMR 405
           I  L  ++    V   G        +  +V EY P+G L + +  +    LD        
Sbjct: 75  IQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQ-RHRARLDASRLLLYS 133

Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LS---- 450
            +I  GM Y L          +        VH         +  +   K++D  L+    
Sbjct: 134 SQICKGMEY-LG---------SRRC-----VHRDLAARNILVESEAHVKIADFGLAKLLP 178

Query: 451 ----------------FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GR 493
                           FW     A  + +    S        S+V++FGV+L+E+ T   
Sbjct: 179 LDKDYYVVREPGQSPIFW----YAPESLSDNIFSRQ------SDVWSFGVVLYELFTYCD 228

Query: 494 LPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET-------------LGELI 540
                    L     +    V  L + +         E LE              + EL+
Sbjct: 229 KSCSPSAEFLRMMGCER--DVPALSRLL---------ELLEEGQRLPAPPACPAEVHELM 277

Query: 541 KSCVRADPEKRPTMRDIAAILREI 564
           K C    P+ RP+   +   L  +
Sbjct: 278 KLCWAPSPQDRPSFSALGPQLDML 301

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 94.5 bits (235), Expect = 1e-20
 Identities = 64/315 (20%), Positives = 115/315 (36%), Gaps = 95/315 (30%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKK 349
           ++R+++        + +G    G VY+G       + VA   V + K+    +E +F K+
Sbjct: 217 MERTDIT-----MKHKLGGGQYGEVYEGVW-KKYSLTVA---VKTLKEDTMEVE-EFLKE 266

Query: 350 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMR 405
              + ++ H N V L+G C  E PF   ++ E+   G L +++     + +       M 
Sbjct: 267 AAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVSAVVLLYMA 324

Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LS---- 450
            +I+  M Y LE           N+     +H         + E++  K++D  LS    
Sbjct: 325 TQISSAMEY-LEKK---------NF-----IHRNLAARNCLVGENHLVKVADFGLSRLMT 369

Query: 451 --------------FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLP 495
                          W     A  +    K S        S+V+ FGVLL+E+ T G  P
Sbjct: 370 GDTYTAHAGAKFPIKW----TAPESLAYNKFSIK------SDVWAFGVLLWEIATYGMSP 419

Query: 496 YLVDNGSLEDWAADYLSGVQPLQQFVD------PTLSSFDEEQLETLGELIKSCVRADPE 549
           Y              +   Q  +          P          E + EL+++C + +P 
Sbjct: 420 Y------------PGIDLSQVYELLEKDYRMERPEGCP------EKVYELMRACWQWNPS 461

Query: 550 KRPTMRDIAAILREI 564
            RP+  +I      +
Sbjct: 462 DRPSFAEIHQAFETM 476

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 91.5 bits (228), Expect = 1e-20
 Identities = 62/317 (19%), Positives = 104/317 (32%), Gaps = 91/317 (28%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFR 347
           +   +L          +G    G V +G     +G  ++VA   +             F 
Sbjct: 15  IGEKDLR-----LLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFI 69

Query: 348 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WG 403
           ++++ +  ++H+N + L G      P    MV E AP G+L + +  K   H        
Sbjct: 70  REVNAMHSLDHRNLIRLYGVVLTP-PM--KMVTELAPLGSLLDRLR-KHQGHFLLGTLSR 125

Query: 404 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSFW 452
             +++A GM Y LE            +     +H         L      K+ D  L   
Sbjct: 126 YAVQVAEGMGY-LESK---------RF-----IHRDLAARNLLLATRDLVKIGDFGLMRA 170

Query: 453 NEIAMAE-MAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNG 501
                   +    +K+     AP +      S  S+ + FGV L+EM T G+ P+     
Sbjct: 171 LPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPW----- 225

Query: 502 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE--------------LIKSCVRAD 547
                    L+G Q L              +++  GE              ++  C    
Sbjct: 226 -------IGLNGSQIL-------------HKIDKEGERLPRPEDCPQDIYNVMVQCWAHK 265

Query: 548 PEKRPTMRDIAAILREI 564
           PE RPT   +   L E 
Sbjct: 266 PEDRPTFVALRDFLLEA 282

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 90.1 bits (224), Expect = 5e-20
 Identities = 57/326 (17%), Positives = 105/326 (32%), Gaps = 94/326 (28%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-DWPKNLEVQFRK 348
            ++  L+         +G    G V         +     V+V S K +   N     +K
Sbjct: 18  FEKRFLK-----RIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKK 72

Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI-----HIKESEHLDWG 403
           +I+ L  + H+N V   G C E+      ++ E+ P+G+L E++      I   + L + 
Sbjct: 73  EIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYA 132

Query: 404 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LS-- 450
             ++I  GM Y L             Y     VH         +  ++  K+ D  L+  
Sbjct: 133 --VQICKGMDY-LGSR---------QY-----VHRDLAARNVLVESEHQVKIGDFGLTKA 175

Query: 451 ------------------FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT- 491
                             FW     A       K   A      S+V++FGV L E++T 
Sbjct: 176 IETDKEYYTVKDDRDSPVFW----YAPECLMQSKFYIA------SDVWSFGVTLHELLTY 225

Query: 492 GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET-------------LGE 538
                      L+     +  G   + + V           L+              + +
Sbjct: 226 CDSDSSPMALFLKMIGPTH--GQMTVTRLV---------NTLKEGKRLPCPPNCPDEVYQ 274

Query: 539 LIKSCVRADPEKRPTMRDIAAILREI 564
           L++ C    P  R + +++      +
Sbjct: 275 LMRKCWEFQPSNRTSFQNLIEGFEAL 300

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 91.4 bits (227), Expect = 8e-20
 Identities = 75/338 (22%), Positives = 123/338 (36%), Gaps = 97/338 (28%)

Query: 272 ATGLSGQLQKAFVTGVPKLKRS-----ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIA 326
           A GL  +L     T  P+ +       E+          +G    G V+ GT +    +A
Sbjct: 153 ADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVA 212

Query: 327 VASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNG 386
           + ++   +           F ++   + K+ H+  V L      EEP    +V EY   G
Sbjct: 213 IKTLKPGTMS------PEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPI--YIVTEYMSKG 263

Query: 387 TLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH----- 437
           +L + +  +  ++L       M  +IA GMAY +E M         NY     VH     
Sbjct: 264 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAY-VERM---------NY-----VHRDLRA 308

Query: 438 ----LTEDYAAKLSD--LS------------------FWNEIAMAEMAATSKKLSSAPSA 473
               + E+   K++D  L+                   W     A  AA   + +     
Sbjct: 309 ANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW----TAPEAALYGRFTIK--- 361

Query: 474 SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD------PTLS 526
              S+V++FG+LL E+ T GR+PY              +   + L Q         P   
Sbjct: 362 ---SDVWSFGILLTELTTKGRVPY------------PGMVNREVLDQVERGYRMPCPPEC 406

Query: 527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
                  E+L +L+  C R +PE+RPT   + A L + 
Sbjct: 407 P------ESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 438

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 89.7 bits (223), Expect = 8e-20
 Identities = 62/318 (19%), Positives = 104/318 (32%), Gaps = 80/318 (25%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-DWPKNLEVQFRK 348
             +  L+         +G    G V         +     V+V + K D        +++
Sbjct: 28  FHKRYLK-----KIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQ 82

Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD-WGMRLR 407
           +ID L  + H++ +   G CE+    +  +V EY P G+L +++               +
Sbjct: 83  EIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQ 142

Query: 408 IAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LS------ 450
           I  GMAY L          A +Y     +H         L  D   K+ D  L+      
Sbjct: 143 ICEGMAY-LH---------AQHY-----IHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG 187

Query: 451 --------------FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLP 495
                         FW     A       K   A      S+V++FGV L+E++T     
Sbjct: 188 HEYYRVREDGDSPVFW----YAPECLKEYKFYYA------SDVWSFGVTLYELLTHCDSS 237

Query: 496 YLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE--QLE-------TLGELIKSCVRA 546
                  LE              Q     L+   E   +L         +  L+K+C   
Sbjct: 238 QSPPTKFLELIGIAQ-------GQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWET 290

Query: 547 DPEKRPTMRDIAAILREI 564
           +   RPT  ++  IL+ +
Sbjct: 291 EASFRPTFENLIPILKTV 308

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 91.3 bits (227), Expect = 9e-20
 Identities = 69/316 (21%), Positives = 118/316 (37%), Gaps = 103/316 (32%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSV-ASAKDWPKNLEVQFRK 348
           L   EL+         IG    G V  G    G ++AV  +   A+A+         F  
Sbjct: 190 LNMKELK-----LLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQA--------FLA 235

Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GM 404
           +   ++++ H N V L+G   EE+     +V EY   G+L +++  +    L        
Sbjct: 236 EASVMTQLRHSNLVQLLGVIVEEKGGL-YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF 294

Query: 405 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSFWNEI 455
            L +   M Y LE           N+     VH         ++ED  AK+SD  F    
Sbjct: 295 SLDVCEAMEY-LEGN---------NF-----VHRDLAARNVLVSEDNVAKVSD--FG--- 334

Query: 456 AMAEMAATSKKLS------SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGS 502
            + + A++++         +AP A      S +S+V++FG+LL+E+ + GR+PY      
Sbjct: 335 -LTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY------ 387

Query: 503 LEDWAADYLSGVQPLQQFVDPTLSSFD-EEQLE-------------TLGELIKSCVRADP 548
                               P +   D   ++E              + +++K+C   D 
Sbjct: 388 --------------------PRIPLKDVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDA 427

Query: 549 EKRPTMRDIAAILREI 564
             RPT   +   L  I
Sbjct: 428 ATRPTFLQLREQLEHI 443

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 56/301 (18%), Positives = 111/301 (36%), Gaps = 62/301 (20%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-DWPKNLEVQFRK 348
           LK +E +        V+GS   GTVYKG      E     V++   +         +   
Sbjct: 12  LKETEFK-----KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 66

Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGM 404
           +   ++ V++ +   L+G C         ++ +  P G L +++  +  +++        
Sbjct: 67  EAYVMASVDNPHVCRLLGICLTSTV---QLITQLMPFGCLLDYVR-EHKDNIGSQYLLNW 122

Query: 405 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSFWN 453
            ++IA GM Y LE                  VH         +      K++D  L+   
Sbjct: 123 CVQIAKGMNY-LEDR---------RL-----VHRDLAARNVLVKTPQHVKITDFGLAKLL 167

Query: 454 EIAMAEMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSL 503
                E  A   K+     A  +      + +S+V+++GV ++E++T G  PY  D    
Sbjct: 168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPY--DGIPA 225

Query: 504 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
            +  +  L   + L Q   P + +        +  ++  C   D + RP  R++     +
Sbjct: 226 SE-ISSILEKGERLPQ---PPICT------IDVYMIMVKCWMIDADSRPKFRELIIEFSK 275

Query: 564 I 564
           +
Sbjct: 276 M 276

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 88.0 bits (219), Expect = 1e-19
 Identities = 69/316 (21%), Positives = 119/316 (37%), Gaps = 103/316 (32%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASV-SVASAKDWPKNLEVQFRK 348
           L   EL+         IG    G V  G    G ++AV  + + A+A+         F  
Sbjct: 18  LNMKELK-----LLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQA--------FLA 63

Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GM 404
           +   ++++ H N V L+G   EE+     +V EY   G+L +++  +    L        
Sbjct: 64  EASVMTQLRHSNLVQLLGVIVEEKGGL-YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF 122

Query: 405 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSFWNEI 455
            L +   M Y LE           N+     VH         ++ED  AK+SD  F    
Sbjct: 123 SLDVCEAMEY-LEGN---------NF-----VHRDLAARNVLVSEDNVAKVSD--F---- 161

Query: 456 AMAEMAATSKKLS------SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGS 502
            + + A++++         +AP A      S +S+V++FG+LL+E+ + GR+PY      
Sbjct: 162 GLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY------ 215

Query: 503 LEDWAADYLSGVQPLQQFVDPTLSSFD-EEQLE-------------TLGELIKSCVRADP 548
                               P +   D   ++E              + E++K+C   D 
Sbjct: 216 --------------------PRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDA 255

Query: 549 EKRPTMRDIAAILREI 564
             RP+   +   L  I
Sbjct: 256 AMRPSFLQLREQLEHI 271

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 66/309 (21%), Positives = 119/309 (38%), Gaps = 70/309 (22%)

Query: 286 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ 345
           G P   + E+E       + +G    G VY+G       + VA   V + K+    +E +
Sbjct: 1   GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVW-KKYSLTVA---VKTLKEDTMEVE-E 55

Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 402
           F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +     
Sbjct: 56  FLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVSAVVL 113

Query: 403 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSFW 452
             M  +I+  M Y LE           N+     +H         + E++  K++D    
Sbjct: 114 LYMATQISSAMEY-LEKK---------NF-----IHRDLAARNCLVGENHLVKVADFGLS 158

Query: 453 NEIAMAEMAATSK-KLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNG 501
             +      A +  K     +AP +      S++S+V+ FGVLL+E+ T G  PY     
Sbjct: 159 RLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY----- 213

Query: 502 SLEDWAADYLSGVQPLQQFVD------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMR 555
                    +   Q  +          P          E + EL+++C + +P  RP+  
Sbjct: 214 -------PGIDLSQVYELLEKDYRMERPEGCP------EKVYELMRACWQWNPSDRPSFA 260

Query: 556 DIAAILREI 564
           +I      +
Sbjct: 261 EIHQAFETM 269

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 65/296 (21%), Positives = 113/296 (38%), Gaps = 78/296 (26%)

Query: 305 VIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
            +GS   GTV KG      V   VA V +   +     L+ +   + + + ++++   V 
Sbjct: 24  ELGSGNFGTVKKGYYQMKKVVKTVA-VKILKNEANDPALKDELLAEANVMQQLDNPYIVR 82

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMRLRIAMGMAYCLEHM 419
           +IG C E E +  M+V E A  G L +  +++++ H+       +  +++MGM Y LE  
Sbjct: 83  MIGIC-EAESW--MLVMEMAELGPLNK--YLQQNRHVKDKNIIELVHQVSMGMKY-LEES 136

Query: 420 HQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSFWNEIAMAEMAATSKKLS 468
                    N+     VH         L   + AK+SD  LS    +   E    ++   
Sbjct: 137 ---------NF-----VHRDLAARNVLLVTQHYAKISDFGLS--KALRADENYYKAQTHG 180

Query: 469 ------SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
                  AP        S +S+V++FGVL++E  + G+ PY              + G +
Sbjct: 181 KWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPY------------RGMKGSE 228

Query: 516 PLQQFVD-------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
                ++       P            + +L+  C   D E RP    +   LR  
Sbjct: 229 VTAM-LEKGERMGCPAGCP------REMYDLMNLCWTYDVENRPGFAAVELRLRNY 277

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 90.5 bits (225), Expect = 2e-19
 Identities = 58/312 (18%), Positives = 107/312 (34%), Gaps = 94/312 (30%)

Query: 294 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTL 353
           E+          +G+   G V+  T +   ++AV ++   S           F  + + +
Sbjct: 184 EIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMS------VEAFLAEANVM 237

Query: 354 SKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIA 409
             + H   V L      +EP    ++ E+   G+L + +   E              +IA
Sbjct: 238 KTLQHDKLVKLHAVV-TKEPI--YIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIA 294

Query: 410 MGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LS-------- 450
            GMA+ +E           NY     +H         ++     K++D  L+        
Sbjct: 295 EGMAF-IEQR---------NY-----IHRDLRAANILVSASLVCKIADFGLARVIEDNEY 339

Query: 451 ----------FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVD 499
                      W     A  A      +        S+V++FG+LL E+VT GR+PY   
Sbjct: 340 TAREGAKFPIKW----TAPEAINFGSFTIK------SDVWSFGILLMEIVTYGRIPY--- 386

Query: 500 NGSLEDWAADYLSGVQPLQQFVD-------PTLSSFDEEQLETLGELIKSCVRADPEKRP 552
                      +S  + ++  ++       P          E L  ++  C +  PE+RP
Sbjct: 387 ---------PGMSNPEVIRA-LERGYRMPRPENCP------EELYNIMMRCWKNRPEERP 430

Query: 553 TMRDIAAILREI 564
           T   I ++L + 
Sbjct: 431 TFEYIQSVLDDF 442

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 90.3 bits (224), Expect = 2e-19
 Identities = 75/338 (22%), Positives = 123/338 (36%), Gaps = 97/338 (28%)

Query: 272 ATGLSGQLQKAFVTGVPKLKRS-----ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIA 326
           A GL  +L     T  P+ +       E+          +G    G V+ GT +    +A
Sbjct: 236 ADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVA 295

Query: 327 VASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNG 386
           + ++   +           F ++   + K+ H+  V L      EEP    +V EY   G
Sbjct: 296 IKTLKPGTMS------PEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPI--YIVTEYMSKG 346

Query: 387 TLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH----- 437
           +L + +  +  ++L       M  +IA GMAY +E M         NY     VH     
Sbjct: 347 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAY-VERM---------NY-----VHRDLRA 391

Query: 438 ----LTEDYAAKLSD--LS------------------FWNEIAMAEMAATSKKLSSAPSA 473
               + E+   K++D  L+                   W     A  AA   + +     
Sbjct: 392 ANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW----TAPEAALYGRFTIK--- 444

Query: 474 SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD------PTLS 526
              S+V++FG+LL E+ T GR+PY              +   + L Q         P   
Sbjct: 445 ---SDVWSFGILLTELTTKGRVPY------------PGMVNREVLDQVERGYRMPCPPEC 489

Query: 527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
                  E+L +L+  C R +PE+RPT   + A L + 
Sbjct: 490 P------ESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 521

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 86.9 bits (216), Expect = 4e-19
 Identities = 61/346 (17%), Positives = 121/346 (34%), Gaps = 120/346 (34%)

Query: 287 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA--SAKDWPKNLEV 344
           V  +KR ++          +G    G V+       +      + VA  + KD       
Sbjct: 9   VQHIKRRDIV-----LKRELGEGAFGKVFLAEC-YNLSPTKDKMLVAVKALKDPTLAARK 62

Query: 345 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL--------------FE 390
            F+++ + L+ + H++ V   G C + +P   +MVFEY  +G L               +
Sbjct: 63  DFQREAELLTNLQHEHIVKFYGVCGDGDPL--IMVFEYMKHGDLNKFLRAHGPDAMILVD 120

Query: 391 HIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH--------- 437
               +    L       +  +IA GM Y L          + ++     VH         
Sbjct: 121 GQPRQAKGELGLSQMLHIASQIASGMVY-LA---------SQHF-----VHRDLATRNCL 165

Query: 438 LTEDYAAKLSDLSF-----------------------WNEIAMAEMAATSKKLSSAPSAS 474
           +  +   K+ D  F                       W    M   +   +K ++     
Sbjct: 166 VGANLLVKIGD--FGMSRDVYSTDYYRVGGHTMLPIRW----MPPESIMYRKFTT----- 214

Query: 475 LESNVYNFGVLLFEMVT-GRLPY----------LVDNGSLEDWAADYLSGVQPLQQFVDP 523
            ES+V++FGV+L+E+ T G+ P+           +  G +             L++   P
Sbjct: 215 -ESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRV-------------LER---P 257

Query: 524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP 569
            +        + + +++  C + +P++R  +++I  IL  +   TP
Sbjct: 258 RVCP------KEVYDVMLGCWQREPQQRLNIKEIYKILHALGKATP 297

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.0 bits (224), Expect = 6e-19
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 5   CRNLKDLCL-----EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
              L+DL L     EG +  E+  +  ++++IL  N  +G IP G      L  +   +N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500

Query: 60  NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 100
             +G +P  +G   +L IL L NN F G++  E+   + L 
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.6 bits (223), Expect = 7e-19
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 5   CRNLKDLCL-----EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
           C  L  L L      GT+   + SL+ ++ + L  N   G IP+    ++ LE L    N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 60  NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 100
           + +G +P+ L    +L  + L NN   G +   I +L+ L+
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.8 bits (221), Expect = 1e-18
 Identities = 25/87 (28%), Positives = 38/87 (43%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
             G + P + + + + S+ L  N  SG IP   G L +L  L    N   G +P +L   
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVL 99
            +L  L+LD ND  G +   +     L
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNL 492

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.3 bits (212), Expect = 2e-17
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 5   CRNLKDLCL-----EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
            + L+ L L      G +   + + T++  I L NN  +G IP+  G LE L +L   +N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

Query: 60  NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSC 119
           +FSG +P +LG   SL  L L+ N F G++   ++K      +    G+     K +   
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584

Query: 120 YERSIKWN 127
            E     N
Sbjct: 585 KECHGAGN 592

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.6 bits (210), Expect = 3e-17
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 13  LEGTLAPEI--QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG 70
             G + P +       ++ + L+NN F+G IP       EL  L    N  SG +P+ LG
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 71  INHSLTILLLDNNDFVGSLSPEIYKLQVL 99
               L  L L  N   G +  E+  ++ L
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTL 468

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 3e-16
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 5   CRNLKDLCL-----EGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 58
            ++L+ L L      G +   +  +   +  + L  N F G +P  FG    LE L    
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 59  NNFSGPLPND-LGINHSLTILLLDNNDFVGSLSPEIYKL 96
           NNFSG LP D L     L +L L  N+F G L   +  L
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 5e-16
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 5   CRNLKDLCL-----EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
           C NL+ L +        + P +   + ++ + +  N  SG          EL++L+   N
Sbjct: 199 CVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 60  NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 100
            F GP+P       SL  L L  N F G +   +      L  L 
Sbjct: 258 QFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.0 bits (198), Expect = 9e-16
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 8/101 (7%)

Query: 5   CRNLKDLCL-----EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
           C  L+ L +      G  +  I + T +K + + +N F G IP     L+ L+ L    N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN 279

Query: 60  NFSGPLPNDLGINH-SLTILLLDNNDFVGSLSPEIYKLQVL 99
            F+G +P+ L     +LT L L  N F G++ P      +L
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 2e-14
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 5   CRNLKDLCL-----EGTLAPEIQSLT-HIKSIILRNNSFSGIIPEGFGE--LEELEVLDF 56
            R LK L L      G L   + +L+  + ++ L +N+FSG I     +     L+ L  
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 57  GHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 100
            +N F+G +P  L     L  L L  N   G++   +  L  L 
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.4 bits (181), Expect = 9e-14
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 7   NLKDLCLE---GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 63
           +L    L      ++  + SLT ++S+ L N+  +G +   F     L  LD   N+ SG
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSG 114

Query: 64  PLPNDLGINH--SLTILLLDNNDFVGSLSPEIY----KLQVLS 100
           P+     +     L  L + +N                L+VL 
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.0 bits (180), Expect = 1e-13
 Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 11/103 (10%)

Query: 5   CRNLKDLCL-----EGTLAPEIQ---SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDF 56
             +L+ L L      G              +K + +  N  SG +         LE LD 
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDV 207

Query: 57  GHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 99
             NNFS  +P  LG   +L  L +  N   G  S  I     L
Sbjct: 208 SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTEL 249

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.0 bits (180), Expect = 1e-13
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
           L G +  EI S+ ++  + L +N  SG IP+  G+L  L +LD   N   G +P  +   
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVLSES 102
             LT + L NN+  G + PE+ + +    +
Sbjct: 704 TMLTEIDLSNNNLSGPI-PEMGQFETFPPA 732

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.0 bits (180), Expect = 1e-13
 Identities = 22/88 (25%), Positives = 40/88 (45%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
            +G  + ++  L+      + +  + G     F     +  LD  +N  SG +P ++G  
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVLS 100
             L IL L +ND  GS+  E+  L+ L+
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLN 683

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.7 bits (174), Expect = 6e-13
 Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 2/95 (2%)

Query: 7   NLKDLCLEGTLAPEIQSLTHIKSIILRNN--SFSGIIPEGFGELEELEVLDFGHNNFSGP 64
            +    + G     I++    K      N   F GI  E    L      +     + G 
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623

Query: 65  LPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 99
                  N S+  L +  N   G +  EI  +  L
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.7 bits (174), Expect = 7e-13
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
             G  +P   +   +  + +  N  SG IP+  G +  L +L+ GHN+ SG +P+++G  
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVLS 100
             L IL L +N   G +   +  L +L+
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLT 707

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 6e-10
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 5   CRNLKDLCL-----EGTL--APEIQSLTHIKSIILRNNSFSGIIP-EGFGELEELEVLDF 56
             +L  L L      G +     + S + +K + + +N+        G  +L  LEVLD 
Sbjct: 99  SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158

Query: 57  GHNNFSGPLPNDLGINH---SLTILLLDNNDFVGSLS 90
             N+ SG       ++     L  L +  N   G + 
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 7e-08
 Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 6/90 (6%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN--NFSGPLPNDLG 70
             GT+   +       S  +  N  +G            +      N   F G     L 
Sbjct: 550 FNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605

Query: 71  INHSLTILLLDNNDFVGSLSPEIYKLQVLS 100
              +     + +  + G  SP       + 
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 7e-08
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 23  SLTHIKSIILRNNSFSGI---IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 79
               + SI L +   +     +      L  LE L   +++ +G +      + SLT L 
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 80  LDNNDFVGSLSPEI-----YKLQVLS 100
           L  N   G ++          L+ L+
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLN 132

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 68/301 (22%), Positives = 125/301 (41%), Gaps = 63/301 (20%)

Query: 294 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-DWPKNLEVQFRKKIDT 352
           E+  +C     VIG+   G VYKG L          V++ + K  + +   V F  +   
Sbjct: 40  EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGI 99

Query: 353 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRI 408
           + + +H N + L G   + +P   M++ EY  NG L + +  ++          GM   I
Sbjct: 100 MGQFSHHNIIRLEGVISKYKPM--MIITEYMENGALDKFLR-EKDGEFSVLQLVGMLRGI 156

Query: 409 AMGMAYCLEHMHQLNPPI-----AHNYLNSSAVHLTEDYAAKLSD--LS-FWNEIAMAEM 460
           A GM Y L +M+     +     A N L      +  +   K+SD  LS    +   A  
Sbjct: 157 AAGMKY-LANMNY----VHRDLAARNIL------VNSNLVCKVSDFGLSRVLEDDPEATY 205

Query: 461 AATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADY 510
             +  K+    +AP A      +  S+V++FG++++E++T G  PY        +     
Sbjct: 206 TTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPY-------WEL---- 254

Query: 511 LSGVQPLQQFVDPTLSSFDEEQLE-------TLGELIKSCVRADPEKRPTMRDIAAILRE 563
            S  + ++  ++      D  +L         + +L+  C + +  +RP   DI +IL +
Sbjct: 255 -SNHEVMKA-IN------DGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDK 306

Query: 564 I 564
           +
Sbjct: 307 L 307

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 86.1 bits (214), Expect = 8e-19
 Identities = 65/316 (20%), Positives = 117/316 (37%), Gaps = 82/316 (25%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAK-DWPKNLEVQF 346
           + R ++       + ++G    G VY+G      G +I VA   V + K D   + + +F
Sbjct: 9   IAREDVV-----LNRILGEGFFGEVYEGVYTNHKGEKINVA---VKTCKKDCTLDNKEKF 60

Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----W 402
             +   +  ++H + V LIG  EEE P    ++ E  P G L  ++  +    L      
Sbjct: 61  MSEAVIMKNLDHPHIVKLIGIIEEE-PT--WIIMELYPYGELGHYLE-RNKNSLKVLTLV 116

Query: 403 GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSF 451
              L+I   MAY LE         + N      VH         +      KL D  LS 
Sbjct: 117 LYSLQICKAMAY-LE---------SINC-----VHRDIAVRNILVASPECVKLGDFGLSR 161

Query: 452 WNEIAMAEMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNG 501
           + E       A+  +L     +P +      +  S+V+ F V ++E+++ G+ P+     
Sbjct: 162 YIEDE-DYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPF----- 215

Query: 502 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE-------TLGELIKSCVRADPEKRPTM 554
               +    L     +   ++        ++L         L  L+  C   DP  RP  
Sbjct: 216 ----FW---LENKDVIGV-LE------KGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRF 261

Query: 555 RDIAAILREITGITPD 570
            ++   L ++  +  D
Sbjct: 262 TELVCSLSDVYQMEKD 277

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 59/324 (18%), Positives = 105/324 (32%), Gaps = 90/324 (27%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKK 349
            +   L+     F   +G    G+V         +     V+V   +   +     F ++
Sbjct: 7   FEERHLK-----FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 61

Query: 350 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMR 405
           I+ L  + H N V   G C         ++ EY P G+L +++  K  E +D        
Sbjct: 62  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYT 120

Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LS---- 450
            +I  GM Y L             Y     +H         +  +   K+ D  L+    
Sbjct: 121 SQICKGMEY-LG---------TKRY-----IHRDLATRNILVENENRVKIGDFGLTKVLP 165

Query: 451 ----------------FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRL 494
                           FW     A  + T  K S A      S+V++FGV+L+E+ T   
Sbjct: 166 QDKEFFKVKEPGESPIFW----YAPESLTESKFSVA------SDVWSFGVVLYELFT--- 212

Query: 495 PYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD-EEQLET-------------LGELI 540
              ++           + G           +  F   E L+              +  ++
Sbjct: 213 --YIEKSKSPPAEFMRMIGNDK-----QGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIM 265

Query: 541 KSCVRADPEKRPTMRDIAAILREI 564
             C   +  +RP+ RD+A  + +I
Sbjct: 266 TECWNNNVNQRPSFRDLALRVDQI 289

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 86.3 bits (214), Expect = 1e-18
 Identities = 59/324 (18%), Positives = 105/324 (32%), Gaps = 90/324 (27%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKK 349
            +   L+     F   +G    G+V         +     V+V   +   +     F ++
Sbjct: 38  FEERHLK-----FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 92

Query: 350 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMR 405
           I+ L  + H N V   G C         ++ EY P G+L +++  K  E +D        
Sbjct: 93  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYT 151

Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LS---- 450
            +I  GM Y L             Y     +H         +  +   K+ D  L+    
Sbjct: 152 SQICKGMEY-LG---------TKRY-----IHRDLATRNILVENENRVKIGDFGLTKVLP 196

Query: 451 ----------------FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRL 494
                           FW     A  + T  K S A      S+V++FGV+L+E+ T   
Sbjct: 197 QDKEYYKVKEPGESPIFW----YAPESLTESKFSVA------SDVWSFGVVLYELFT--- 243

Query: 495 PYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD-EEQLET-------------LGELI 540
              ++           + G           +  F   E L+              +  ++
Sbjct: 244 --YIEKSKSPPAEFMRMIGNDK-----QGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIM 296

Query: 541 KSCVRADPEKRPTMRDIAAILREI 564
             C   +  +RP+ RD+A  + +I
Sbjct: 297 TECWNNNVNQRPSFRDLALRVDQI 320

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 61/280 (21%), Positives = 105/280 (37%), Gaps = 55/280 (19%)

Query: 302 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 360
           F   IG     TVYKG      VE+A   +     +   K+   +F+++ + L  + H N
Sbjct: 30  FDIEIGRGSFKTVYKGLDTETTVEVAWCELQD---RKLTKSERQRFKEEAEMLKGLQHPN 86

Query: 361 FVNLIGFCEEEEPFTRMMVF--EYAPNGTLFEHIHIKESEHLDWGMRLR----IAMGMAY 414
            V      E      + +V   E   +GTL  ++  K  + +   +       I  G+ +
Sbjct: 87  IVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYL--KRFKVMKIKVLRSWCRQILKGLQF 144

Query: 415 CLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWNEIAMAEMAATSKKLSS---- 469
               +H   PPI H  L    + +T    + K+ DL       +A +   S   +     
Sbjct: 145 ----LHTRTPPIIHRDLKCDNIFITGPTGSVKIGDL------GLATLKRASFAKAVIGTP 194

Query: 470 ---AP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL---SGVQP-- 516
              AP           +VY FG+ + EM T   PY       ++ A  Y    SGV+P  
Sbjct: 195 EFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYS----ECQNAAQIYRRVTSGVKPAS 250

Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRD 556
             +   P +              I+ C+R + ++R +++D
Sbjct: 251 FDKVAIPEVKEI-----------IEGCIRQNKDERYSIKD 279

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 84.6 bits (210), Expect = 2e-18
 Identities = 61/309 (19%), Positives = 117/309 (37%), Gaps = 88/309 (28%)

Query: 294 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSV-ASAKDWPKNLEVQFRKKIDT 352
            ++ +   F   IGS   G V+ G   N  ++A+ ++   A +++        F ++ + 
Sbjct: 4   VIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEE-------DFIEEAEV 56

Query: 353 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW---GMRLRIA 409
           + K++H   V L G C E+ P    +V E+  +G L +++  +          GM L + 
Sbjct: 57  MMKLSHPKLVQLYGVCLEQAPI--CLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVC 114

Query: 410 MGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSFWNEIAMAEM 460
            GMAY LE                  +H         + E+   K+SD      +   + 
Sbjct: 115 EGMAY-LEEA---------CV-----IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY 159

Query: 461 AATSK-KLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAAD 509
            +++  K     ++P        S +S+V++FGVL++E+ + G++PY             
Sbjct: 160 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPY------------- 206

Query: 510 YLSGVQPLQQFVDPTLSSFD-EEQLE-------------TLGELIKSCVRADPEKRPTMR 555
                           S+ +  E +               + +++  C R  PE RP   
Sbjct: 207 -------------ENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFS 253

Query: 556 DIAAILREI 564
            +   L EI
Sbjct: 254 RLLRQLAEI 262

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 85.3 bits (212), Expect = 2e-18
 Identities = 25/90 (27%), Positives = 41/90 (45%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
           L G + P I  LT +  + + + + SG IP+   +++ L  LDF +N  SG LP  +   
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVLSES 102
            +L  +  D N   G++         L  S
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTS 178

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 78.7 bits (195), Expect = 4e-16
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 7   NLKDLCLEGTLA--PEIQSLTHIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSG 63
           +L  L L         + +L ++  + +   N+  G IP    +L +L  L   H N SG
Sbjct: 56  DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115

Query: 64  PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
            +P+ L    +L  L    N   G+L P I  L  L  
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.4 bits (189), Expect = 2e-15
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 5   CRNLKDLCLE-----GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
              L  L +      G +   +  +  + ++    N+ SG +P     L  L  + F  N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 60  NFSGPLPNDLGINHSL-TILLLDNNDFVGSLSPEIYKL 96
             SG +P+  G    L T + +  N   G + P    L
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.8 bits (177), Expect = 7e-14
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
           L G + P   +L  +  + L  N   G     FG  +  + +    N+ +  L   +G++
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLS 243

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVLS 100
            +L  L L NN   G+L   + +L+ L 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 69.9 bits (172), Expect = 3e-13
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
           LEG  +    S  + + I L  NS +  + +  G  + L  LD  +N   G LP  L   
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVLSESQV 104
             L  L +  N+  G + P+   LQ    S  
Sbjct: 268 KFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAY 298

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.8 bits (164), Expect = 3e-12
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 5   CRNLKDLCL-----EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
            +N + + L        L  ++    ++  + LRNN   G +P+G  +L+ L  L+   N
Sbjct: 220 DKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 60  NFSGPLPNDLGINHSLTILLLDNND 84
           N  G +P   G      +    NN 
Sbjct: 279 NLCGEIPQ-GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.9 bits (154), Expect = 5e-11
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%)

Query: 10  DLC---LEGTLAPEIQSLTHIKSIILRNNSFSG--IIPEGFGELEELEVLDF-GHNNFSG 63
           D C     G L         + ++ L   +      IP     L  L  L   G NN  G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 64  PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
           P+P  +     L  L + + +  G++   + +++ L  
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 84.5 bits (210), Expect = 2e-18
 Identities = 67/312 (21%), Positives = 121/312 (38%), Gaps = 91/312 (29%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSV-ASAKDWPKNLEVQFRK 348
           LKR E+          +GS   G V  G      ++AV  +   + ++D       +F +
Sbjct: 5   LKREEIT-----LLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSED-------EFFQ 52

Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GM 404
           +  T+ K++H   V   G C +E P    +V EY  NG L  ++     + L+      M
Sbjct: 53  EAQTMMKLSHPKLVKFYGVCSKEYPI--YIVTEYISNGCLLNYLR-SHGKGLEPSQLLEM 109

Query: 405 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSFWNEI 455
              +  GMA+ LE            +     +H         +  D   K+SD  F    
Sbjct: 110 CYDVCEGMAF-LESH---------QF-----IHRDLAARNCLVDRDLCVKVSD--F---- 148

Query: 456 AMA-------EMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLV 498
            M         +++   K     SAP        S +S+V+ FG+L++E+ + G++PY  
Sbjct: 149 GMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPY-- 206

Query: 499 DNGSLEDWAADYLSGVQPLQQFVD------PTLSSFDEEQLETLGELIKSCVRADPEKRP 552
                        +  + + +         P L+S      +T+ +++ SC    PEKRP
Sbjct: 207 -------DL---YTNSEVVLKVSQGHRLYRPHLAS------DTIYQIMYSCWHELPEKRP 250

Query: 553 TMRDIAAILREI 564
           T + + + +  +
Sbjct: 251 TFQQLLSSIEPL 262

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 84.6 bits (210), Expect = 2e-18
 Identities = 59/296 (19%), Positives = 106/296 (35%), Gaps = 80/296 (27%)

Query: 306 IGSSPIGTVYKGTL-SNGVEIAVASVSVASAK-DWPKNLEVQFRKKIDTLSKVNHKNFVN 363
           +G    G+V +G       +I VA   +   K    K    +  ++   + ++++   V 
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVA---IKVLKQGTEKADTEEMMREAQIMHQLDNPYIVR 74

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHM 419
           LIG C + E    M+V E A  G L + +   + E +       +  +++MGM Y LE  
Sbjct: 75  LIGVC-QAEAL--MLVMEMAGGGPLHKFLV-GKREEIPVSNVAELLHQVSMGMKY-LEEK 129

Query: 420 HQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSFWNEIAMAEMAATSKKLS 468
                    N+     VH         L   + AK+SD  LS    +   +   T++   
Sbjct: 130 ---------NF-----VHRDLAARNVLLVNRHYAKISDFGLS--KALGADDSYYTARSAG 173

Query: 469 ------SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
                  AP        S  S+V+++GV ++E ++ G+ PY              + G +
Sbjct: 174 KWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPY---------KK---MKGPE 221

Query: 516 PLQQFVD-------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
            +   ++       P            L  L+  C     E RP    +   +R  
Sbjct: 222 VMAF-IEQGKRMECPPECP------PELYALMSDCWIYKWEDRPDFLTVEQRMRAC 270

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 84.2 bits (209), Expect = 3e-18
 Identities = 53/303 (17%), Positives = 114/303 (37%), Gaps = 76/303 (25%)

Query: 294 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSV-ASAKDWPKNLEVQFRKKIDT 352
           E++     F   +G+   G V  G      ++A+  +   + ++D       +F ++   
Sbjct: 20  EIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-------EFIEEAKV 72

Query: 353 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI-----HIKESEHLDWGMRLR 407
           +  ++H+  V L G C ++ P    ++ EY  NG L  ++       +  + L+  M   
Sbjct: 73  MMNLSHEKLVQLYGVCTKQRPI--FIITEYMANGCLLNYLREMRHRFQTQQLLE--MCKD 128

Query: 408 IAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSFWNEIAMA 458
           +   M Y LE            +     +H         + +    K+SD      +   
Sbjct: 129 VCEAMEY-LESK---------QF-----LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD 173

Query: 459 E-MAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 507
           E  ++   K     S P        S +S+++ FGVL++E+ + G++PY           
Sbjct: 174 EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPY---------ER 224

Query: 508 ADYLSGVQPLQQFVD------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
               +  +  +          P L+S      E +  ++ SC     ++RPT + + + +
Sbjct: 225 ---FTNSETAEHIAQGLRLYRPHLAS------EKVYTIMYSCWHEKADERPTFKILLSNI 275

Query: 562 REI 564
            ++
Sbjct: 276 LDV 278

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 68/334 (20%), Positives = 117/334 (35%), Gaps = 96/334 (28%)

Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVA----SVSVASAKDWPKN 341
            KL+   ++        ++G    G+V +G L   +G  + VA     +  +S ++  + 
Sbjct: 24  NKLEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEE- 82

Query: 342 LEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR---MMVFEYAPNGTLFE----HIHI 394
               F  +   +   +H N + L+G C E         M++  +   G L          
Sbjct: 83  ----FLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLE 138

Query: 395 KESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTED 441
              +H+         + IA+GM Y L            N+     +H         L +D
Sbjct: 139 TGPKHIPLQTLLKFMVDIALGMEY-LS---------NRNF-----LHRDLAARNCMLRDD 183

Query: 442 YAAKLSDLSF-----------------------WNEIAMAEMAATSKKLSSAPSASLESN 478
               ++D  F                       W    +A  +   +  +S      +S+
Sbjct: 184 MTVCVAD--FGLSKKIYSGDYYRQGRIAKMPVKW----IAIESLADRVYTS------KSD 231

Query: 479 VYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETL 536
           V+ FGV ++E+ T G  PY  V N  +     DYL     L+Q   P          + L
Sbjct: 232 VWAFGVTMWEIATRGMTPYPGVQNHEM----YDYLLHGHRLKQ---PEDCL------DEL 278

Query: 537 GELIKSCVRADPEKRPTMRDIAAILREITGITPD 570
            E++ SC R DP  RPT   +   L ++    PD
Sbjct: 279 YEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD 312

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 87.2 bits (216), Expect = 3e-18
 Identities = 63/312 (20%), Positives = 114/312 (36%), Gaps = 77/312 (24%)

Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAK-DWPKNLEV 344
           P  +  E++    +    IG    G V++G         +AVA   + + K     ++  
Sbjct: 380 PSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVA---IKTCKNCTSDSVRE 436

Query: 345 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW-- 402
           +F ++  T+ + +H + V LIG    E P    ++ E    G L   +       LD   
Sbjct: 437 KFLQEALTMRQFDHPHIVKLIGVI-TENPV--WIIMELCTLGELRSFLQ-VRKFSLDLAS 492

Query: 403 --GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--L 449
                 +++  +AY LE         +  +     VH         ++ +   KL D  L
Sbjct: 493 LILYAYQLSTALAY-LE---------SKRF-----VHRDIAARNVLVSSNDCVKLGDFGL 537

Query: 450 SFWNEIAMAEMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVD 499
           S + E       A+  KL     AP +      +  S+V+ FGV ++E++  G  P+   
Sbjct: 538 SRYME-DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPF--- 593

Query: 500 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE-------TLGELIKSCVRADPEKRP 552
                      +     +   ++      + E+L        TL  L+  C   DP +RP
Sbjct: 594 ---------QGVKNNDVI-GRIE------NGERLPMPPNCPPTLYSLMTKCWAYDPSRRP 637

Query: 553 TMRDIAAILREI 564
              ++ A L  I
Sbjct: 638 RFTELKAQLSTI 649

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 84.7 bits (210), Expect = 4e-18
 Identities = 62/342 (18%), Positives = 126/342 (36%), Gaps = 111/342 (32%)

Query: 287 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGV----EIAVASVSVASAKDWPKNL 342
           V  +KR ++          +G    G V+     N +    ++ VA   V + K+  ++ 
Sbjct: 35  VHHIKRRDIV-----LKWELGEGAFGKVFLAECHNLLPEQDKMLVA---VKALKEASESA 86

Query: 343 EVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHL 400
              F+++ + L+ + H++ V   G C E  P   +MVFEY  +G L   +  H  +++ L
Sbjct: 87  RQDFQREAELLTMLQHQHIVRFFGVCTEGRPL--LMVFEYMRHGDLNRFLRSHGPDAKLL 144

Query: 401 DWG---------------MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH-------- 437
             G               +  ++A GM Y L            ++     VH        
Sbjct: 145 AGGEDVAPGPLGLGQLLAVASQVAAGMVY-LA---------GLHF-----VHRDLATRNC 189

Query: 438 -LTEDYAAKLSDLSFWNEIA-----------------MAEMAATSKKLSSAPSASLESNV 479
            + +    K+ D     +I                  M   +   +K ++      ES+V
Sbjct: 190 LVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTT------ESDV 243

Query: 480 YNFGVLLFEMVT-GRLPY----------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 528
           ++FGV+L+E+ T G+ P+           +  G               L++   P     
Sbjct: 244 WSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRE-------------LER---PRACP- 286

Query: 529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD 570
                  +  +++ C + +P++R +++D+ A L+ +    P 
Sbjct: 287 -----PEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPV 323

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 84.2 bits (209), Expect = 4e-18
 Identities = 75/323 (23%), Positives = 125/323 (38%), Gaps = 69/323 (21%)

Query: 273 TGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASV 330
           + L+ +L +A    V       +      F+ VIG    G VY GTL  ++G +I  A  
Sbjct: 5   SALNPELVQAVQHVVIGPSSLIVH-----FNEVIGRGHFGCVYHGTLLDNDGKKIHCA-- 57

Query: 331 SVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLF 389
            V S        EV  F  +   +   +H N ++L+G C   E  + ++V  Y  +G L 
Sbjct: 58  -VKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SPLVVLPYMKHGDLR 115

Query: 390 EHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH-------- 437
             I   E+ +       G  L++A GM Y L                   VH        
Sbjct: 116 NFIR-NETHNPTVKDLIGFGLQVAKGMKY-LASKK--------------FVHRDLAARNC 159

Query: 438 -LTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS-------APSA------SLESNVYNFG 483
            L E +  K++D     ++   E  +   K  +       A  +      + +S+V++FG
Sbjct: 160 MLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFG 219

Query: 484 VLLFEMVT-GRLPYL-VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIK 541
           VLL+E++T G  PY  V+   +      YL   + L Q   P          + L E++ 
Sbjct: 220 VLLWELMTRGAPPYPDVNTFDI----TVYLLQGRRLLQ---PEYCP------DPLYEVML 266

Query: 542 SCVRADPEKRPTMRDIAAILREI 564
            C     E RP+  ++ + +  I
Sbjct: 267 KCWHPKAEMRPSFSELVSRISAI 289

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 86.5 bits (214), Expect = 5e-18
 Identities = 63/317 (19%), Positives = 106/317 (33%), Gaps = 84/317 (26%)

Query: 287 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAK-DWPKNLEV 344
           +   K              +G    G+V +G       +I VA   +   K    K    
Sbjct: 325 LKDKKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVA---IKVLKQGTEKADTE 381

Query: 345 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW-- 402
           +  ++   + ++++   V LIG C+ E     M+V E A  G L + +   + E +    
Sbjct: 382 EMMREAQIMHQLDNPYIVRLIGVCQAEAL---MLVMEMAGGGPLHKFLV-GKREEIPVSN 437

Query: 403 --GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--L 449
              +  +++MGM Y LE           N+     VH         L   + AK+SD  L
Sbjct: 438 VAELLHQVSMGMKY-LEEK---------NF-----VHRNLAARNVLLVNRHYAKISDFGL 482

Query: 450 SFWNEIAMAEMAATSKKLS----SAPSA------SLESNVYNFGVLLFEMVT-GRLPY-- 496
           S       +   A S         AP        S  S+V+++GV ++E ++ G+ PY  
Sbjct: 483 SKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKK 542

Query: 497 --------LVDNGS-LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRAD 547
                    ++ G  +E           P              E    L  L+  C    
Sbjct: 543 MKGPEVMAFIEQGKRME----------CP-------------PECPPELYALMSDCWIYK 579

Query: 548 PEKRPTMRDIAAILREI 564
            E RP    +   +R  
Sbjct: 580 WEDRPDFLTVEQRMRAC 596

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 82.6 bits (205), Expect = 9e-18
 Identities = 62/314 (19%), Positives = 113/314 (35%), Gaps = 98/314 (31%)

Query: 294 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSV-ASAKDWPKNLEVQFRKKIDT 352
           E+          +G+   G V+ G  +   ++AV S+   + + D        F  + + 
Sbjct: 9   EVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-------AFLAEANL 61

Query: 353 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRI 408
           + ++ H+  V L      +EP    ++ EY  NG+L + +       L       M  +I
Sbjct: 62  MKQLQHQRLVRLYAVV-TQEPI--YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 118

Query: 409 AMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSF-------- 451
           A GMA+ +E           NY     +H         +++  + K++D  F        
Sbjct: 119 AEGMAF-IEER---------NY-----IHRDLRAANILVSDTLSCKIAD--FGLARLIED 161

Query: 452 --------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPY 496
                         W     A  A      +        S+V++FG+LL E+VT GR+PY
Sbjct: 162 NEYTAREGAKFPIKW----TAPEAINYGTFTIK------SDVWSFGILLTEIVTHGRIPY 211

Query: 497 LVDNGSLEDWAADYLSGVQPLQQFVD------PTLSSFDEEQLETLGELIKSCVRADPEK 550
                         ++  + +Q          P          E L +L++ C +  PE 
Sbjct: 212 ------------PGMTNPEVIQNLERGYRMVRPDNCP------EELYQLMRLCWKERPED 253

Query: 551 RPTMRDIAAILREI 564
           RPT   + ++L + 
Sbjct: 254 RPTFDYLRSVLEDF 267

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 67/321 (20%), Positives = 117/321 (36%), Gaps = 88/321 (27%)

Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA--SAKDWPKNLEVQ-FRKKIDTLSKV-N 357
           F   +G+   G V + T   G+  + A+++VA    K      E +    ++  LS + N
Sbjct: 27  FGKTLGAGAFGKVVEATA-YGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGN 85

Query: 358 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL----------FEHIHIKESEHLDWGMRLR 407
           H N VNL+G C    P   +++ EY   G L          F       +   D  + L 
Sbjct: 86  HMNIVNLLGACTIGGPT--LVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALD 143

Query: 408 ----------IAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSF 451
                     +A GMA+ L   +       H      N L      LT     K+ D   
Sbjct: 144 LEDLLSFSYQVAKGMAF-LASKN-----CIHRDLAARNIL------LTHGRITKICDFGL 191

Query: 452 WNEIAMAE--MAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVD 499
             +I      +   + +L     AP +      + ES+V+++G+ L+E+ + G  PY   
Sbjct: 192 ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPY--- 248

Query: 500 NGSLEDWAADYLSGVQPLQQFVD----------PTLSSFDEEQLETLGELIKSCVRADPE 549
                        G+    +F            P  +         + +++K+C  ADP 
Sbjct: 249 ------------PGMPVDSKFYKMIKEGFRMLSPEHAP------AEMYDIMKTCWDADPL 290

Query: 550 KRPTMRDIAAILREITGITPD 570
           KRPT + I  ++ +    + +
Sbjct: 291 KRPTFKQIVQLIEKQISESTN 311

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 65/303 (21%), Positives = 111/303 (36%), Gaps = 68/303 (22%)

Query: 294 ELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAK-DWPKNLEVQFRKKI 350
           E+EA+      +IGS   G V  G L      ++ VA   + + K  + +     F  + 
Sbjct: 45  EIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVA---IKALKAGYTERQRRDFLSEA 101

Query: 351 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRL 406
             + + +H N + L G          M+V EY  NG+L   +              GM  
Sbjct: 102 SIMGQFDHPNIIRLEGVVTRGRLA--MIVTEYMENGSLDTFLR-THDGQFTIMQLVGMLR 158

Query: 407 RIAMGMAYCLEHMHQLNPPI-----AHNYLNSSAVHLTEDYAAKLSD--LS-FWNEIAMA 458
            +  GM Y L  +      +     A N L      +  +   K+SD  LS    +   A
Sbjct: 159 GVGAGMRY-LSDLGY----VHRDLAARNVL------VDSNLVCKVSDFGLSRVLEDDPDA 207

Query: 459 EMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAA 508
               T  K+    +AP A      S  S+V++FGV+++E++  G  PY        +   
Sbjct: 208 AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPY-------WNM-- 258

Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQL-------ETLGELIKSCVRADPEKRPTMRDIAAIL 561
              +    +   V+      +  +L         L +L+  C   D  +RP    I ++L
Sbjct: 259 ---TNRDVISS-VE------EGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVL 308

Query: 562 REI 564
             +
Sbjct: 309 DAL 311

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 63/302 (20%), Positives = 107/302 (35%), Gaps = 80/302 (26%)

Query: 302 FSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 358
              VIG    G VY G         I  A   + S     +  +V+ F ++   +  +NH
Sbjct: 25  SDRVIGKGHFGVVYHGEYIDQAQNRIQCA---IKSLSRITEMQQVEAFLREGLLMRGLNH 81

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAY 414
            N + LIG     E     ++  Y  +G L + I      +          L++A GM Y
Sbjct: 82  PNVLALIGIMLPPEG-LPHVLLPYMCHGDLLQFIR-SPQRNPTVKDLISFGLQVARGMEY 139

Query: 415 CLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSFWNEIAMAEMAATSK 465
            L             +     VH         L E +  K++D     +I   E  +  +
Sbjct: 140 -LA---------EQKF-----VHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQ 184

Query: 466 KLSS-------APSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYL 511
              +       A  +      + +S+V++FGVLL+E++T G  PY               
Sbjct: 185 HRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPY--------------- 229

Query: 512 SGVQPLQ--QFVD-------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 562
             + P     F+        P          ++L ++++ C  ADP  RPT R +   + 
Sbjct: 230 RHIDPFDLTHFLAQGRRLPQPEYCP------DSLYQVMQQCWEADPAVRPTFRVLVGEVE 283

Query: 563 EI 564
           +I
Sbjct: 284 QI 285

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 69/303 (22%), Positives = 118/303 (38%), Gaps = 68/303 (22%)

Query: 294 ELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAK-DWPKNLEVQFRKKI 350
           EL+A       V+G+   G V  G L   +  EI+VA   + + K  + +     F  + 
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVA---IKTLKVGYTEKQRRDFLGEA 97

Query: 351 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRL 406
             + + +H N + L G   + +P   M+V EY  NG+L   +  K           GM  
Sbjct: 98  SIMGQFDHPNIIRLEGVVTKSKPV--MIVTEYMENGSLDSFLR-KHDAQFTVIQLVGMLR 154

Query: 407 RIAMGMAYCLEHMHQLNPPI-----AHNYLNSSAVHLTEDYAAKLSD--LS-FWNEIAMA 458
            IA GM Y L  M      +     A N L      +  +   K+SD  L     +   A
Sbjct: 155 GIASGMKY-LSDMGY----VHRDLAARNIL------INSNLVCKVSDFGLGRVLEDDPEA 203

Query: 459 EMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAA 508
                  K+    ++P A      +  S+V+++G++L+E+++ G  PY        +   
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPY-------WEM-- 254

Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQL-------ETLGELIKSCVRADPEKRPTMRDIAAIL 561
              S    ++  VD      +  +L         L +L+  C + D   RP    I +IL
Sbjct: 255 ---SNQDVIKA-VD------EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 304

Query: 562 REI 564
            ++
Sbjct: 305 DKL 307

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 64/343 (18%), Positives = 120/343 (34%), Gaps = 104/343 (30%)

Query: 274 GLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVA--- 328
           G+S +L+        KL+   +         ++G    G+V +  L   +G  + VA   
Sbjct: 6   GISDELK-------EKLEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKM 58

Query: 329 -SVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR----MMVFEYA 383
               + ++ D  +     F ++   + + +H +   L+G         R    M++  + 
Sbjct: 59  LKADIIASSDIEE-----FLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFM 113

Query: 384 PNGTLFE----HIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSA 435
            +G L          +   +L         + IA GM Y L          + N+     
Sbjct: 114 KHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEY-LS---------SRNF----- 158

Query: 436 VH---------LTEDYAAKLSDLSF-----------------------WNEIAMAEMAAT 463
           +H         L ED    ++D  F                       W    +A  +  
Sbjct: 159 IHRDLAARNCMLAEDMTVCVAD--FGLSRKIYSGDYYRQGCASKLPVKW----LALESLA 212

Query: 464 SKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADYLSGVQPLQQFV 521
               +        S+V+ FGV ++E++T G+ PY  ++N  +     +YL G   L+Q  
Sbjct: 213 DNLYTV------HSDVWAFGVTMWEIMTRGQTPYAGIENAEI----YNYLIGGNRLKQ-- 260

Query: 522 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
            P          E + +L+  C  ADP++RP+   +   L  I
Sbjct: 261 -PPECM------EEVYDLMYQCWSADPKQRPSFTCLRMELENI 296

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 82.5 bits (204), Expect = 3e-17
 Identities = 77/336 (22%), Positives = 130/336 (38%), Gaps = 73/336 (21%)

Query: 262 CNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTL-- 319
               +TV    + L+ +L +A    V       +      F+ VIG    G VY GTL  
Sbjct: 58  FQGANTVHIDLSALNPELVQAVQHVVIGPSSLIVH-----FNEVIGRGHFGCVYHGTLLD 112

Query: 320 SNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM 378
           ++G +I  A   V S        EV  F  +   +   +H N ++L+G C   E  + ++
Sbjct: 113 NDGKKIHCA---VKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SPLV 168

Query: 379 VFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSS 434
           V  Y  +G L   I   E+ +       G  L++A GM + L                  
Sbjct: 169 VLPYMKHGDLRNFIR-NETHNPTVKDLIGFGLQVAKGMKF-LASKK-------------- 212

Query: 435 AVH---------LTEDYAAKLSD--LSFWNEIAMAEMAATSKKLSS-------APSA--- 473
            VH         L E +  K++D  L+   ++   E  +   K  +       A  +   
Sbjct: 213 FVHRDLAARNCMLDEKFTVKVADFGLA--RDMYDKEFDSVHNKTGAKLPVKWMALESLQT 270

Query: 474 ---SLESNVYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 528
              + +S+V++FGVLL+E++T G  PY  V+   +      YL   + L Q   P     
Sbjct: 271 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI----TVYLLQGRRLLQ---PEYCP- 322

Query: 529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
                + L E++  C     E RP+  ++ + +  I
Sbjct: 323 -----DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 353

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 80.4 bits (199), Expect = 6e-17
 Identities = 61/309 (19%), Positives = 111/309 (35%), Gaps = 80/309 (25%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAK-DWPKNLEVQF 346
           ++R  +E         IG    G V++G         +AVA   + + K     ++  +F
Sbjct: 12  IQRERIE-----LGRCIGEGQFGDVHQGIYMSPENPALAVA---IKTCKNCTSDSVREKF 63

Query: 347 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE----HLDW 402
            ++  T+ + +H + V LIG    E P    ++ E    G L   + +++       L  
Sbjct: 64  LQEALTMRQFDHPHIVKLIGVI-TENPV--WIIMELCTLGELRSFLQVRKYSLDLASL-I 119

Query: 403 GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSF 451
               +++  +AY LE            +     VH         ++ +   KL D  LS 
Sbjct: 120 LYAYQLSTALAY-LESK---------RF-----VHRDIAARNVLVSSNDCVKLGDFGLSR 164

Query: 452 WNEIAMAEMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNG 501
           + E       A+  KL     AP +      +  S+V+ FGV ++E++  G  P+     
Sbjct: 165 YME-DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPF----- 218

Query: 502 SLEDWAADYLSGVQPLQQFVD------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMR 555
                    +     + +  +      P           TL  L+  C   DP +RP   
Sbjct: 219 ----QG---VKNNDVIGRIENGERLPMPPNCP------PTLYSLMTKCWAYDPSRRPRFT 265

Query: 556 DIAAILREI 564
           ++ A L  I
Sbjct: 266 ELKAQLSTI 274

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 81.2 bits (201), Expect = 6e-17
 Identities = 57/305 (18%), Positives = 105/305 (34%), Gaps = 78/305 (25%)

Query: 302 FSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKV 356
            S  +G    G VY+G          E  VA   + +  +     E   F  +   + + 
Sbjct: 29  MSRELGQGSFGMVYEGVAKGVVKDEPETRVA---IKTVNEAASMRERIEFLNEASVMKEF 85

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMRLR------- 407
           N  + V L+G   + +P   +++ E    G L  ++        +               
Sbjct: 86  NCHHVVRLLGVVSQGQPT--LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQM 143

Query: 408 ---IAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF------------- 451
              IA GMAY L           H  L +    + ED+  K+ D  F             
Sbjct: 144 AGEIADGMAY-LNANK-----FVHRDLAARNCMVAEDFTVKIGD--FGMTRDIYETDYYR 195

Query: 452 ----------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYL-VD 499
                     W    M+  +      ++       S+V++FGV+L+E+ T    PY  + 
Sbjct: 196 KGGKGLLPVRW----MSPESLKDGVFTT------YSDVWSFGVVLWEIATLAEQPYQGLS 245

Query: 500 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 559
           N  +      ++     L +   P          + L EL++ C + +P+ RP+  +I +
Sbjct: 246 NEQV----LRFVMEGGLLDK---PDNCP------DMLFELMRMCWQYNPKMRPSFLEIIS 292

Query: 560 ILREI 564
            ++E 
Sbjct: 293 SIKEE 297

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 81.2 bits (201), Expect = 7e-17
 Identities = 70/330 (21%), Positives = 123/330 (37%), Gaps = 104/330 (31%)

Query: 288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQ- 345
           P L  ++++     F +VIG    G V K  +   G+ +  A   +   K++    + + 
Sbjct: 20  PVLDWNDIK-----FQDVIGEGNFGQVLKARIKKDGLRMDAA---IKRMKEYASKDDHRD 71

Query: 346 FRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEH------------- 391
           F  +++ L K+ +H N +NL+G CE        +  EYAP+G L +              
Sbjct: 72  FAGELEVLCKLGHHPNIINLLGACEHRGYL--YLAIEYAPHGNLLDFLRKSRVLETDPAF 129

Query: 392 -IHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH--------- 437
            I    +  L           +A GM Y L                   +H         
Sbjct: 130 AIANSTASTLSSQQLLHFAADVARGMDY-LSQKQF--------------IHRDLAARNIL 174

Query: 438 LTEDYAAKLSD--LSFWNEIAMAEMAATSKKLS---SAPSA------SLESNVYNFGVLL 486
           + E+Y AK++D  LS   E+ + +   T  +L     A  +      +  S+V+++GVLL
Sbjct: 175 VGENYVAKIADFGLSRGQEVYVKK---TMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLL 231

Query: 487 FEMVT-GRLPY----------LVDNGS-LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE 534
           +E+V+ G  PY           +  G  LE          +P                 +
Sbjct: 232 WEIVSLGGTPYCGMTCAELYEKLPQGYRLE----------KP-------------LNCDD 268

Query: 535 TLGELIKSCVRADPEKRPTMRDIAAILREI 564
            + +L++ C R  P +RP+   I   L  +
Sbjct: 269 EVYDLMRQCWREKPYERPSFAQILVSLNRM 298

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 64/330 (19%), Positives = 110/330 (33%), Gaps = 113/330 (34%)

Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA--SAKDWPKNLEVQ-FRKKIDTLSKV-N 357
           F  V+GS   G V   T   G+     S+ VA    K+   + E +    ++  ++++ +
Sbjct: 49  FGKVLGSGAFGKVMNATA-YGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGS 107

Query: 358 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL---------------FEHIHIKESEHLDW 402
           H+N VNL+G C    P    ++FEY   G L                E+ + K  E  + 
Sbjct: 108 HENIVNLLGACTLSGPI--YLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEED 165

Query: 403 GMRLR----------IAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKL 446
              L           +A GM + LE          H      N L      +T     K+
Sbjct: 166 LNVLTFEDLLCFAYQVAKGMEF-LEFKS-----CVHRDLAARNVL------VTHGKVVKI 213

Query: 447 SDLSF---------------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVL 485
            D                        W    MA  +      +       +S+V+++G+L
Sbjct: 214 CDFGLARDIMSDSNYVVRGNARLPVKW----MAPESLFEGIYTI------KSDVWSYGIL 263

Query: 486 LFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD----------PTLSSFDEEQLE 534
           L+E+ + G  PY                G+     F            P  ++      E
Sbjct: 264 LWEIFSLGVNPY---------------PGIPVDANFYKLIQNGFKMDQPFYAT------E 302

Query: 535 TLGELIKSCVRADPEKRPTMRDIAAILREI 564
            +  +++SC   D  KRP+  ++ + L   
Sbjct: 303 EIYIIMQSCWAFDSRKRPSFPNLTSFLGCQ 332

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 61/310 (19%), Positives = 113/310 (36%), Gaps = 82/310 (26%)

Query: 302 FSNVIGSSPIGTVYKGTLSNGVEI-AVASVSVASAKDWPKNLEVQ-FRKKIDTLSKV-NH 358
           F   +G+   G V + T     +  AV  V+V   K      E +    ++  +S +  H
Sbjct: 50  FGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQH 109

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTL------------FEHIHIKESEHLDWG--- 403
           +N VNL+G C    P   +++ EY   G L             +      +         
Sbjct: 110 ENIVNLLGACTHGGPV--LVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLL 167

Query: 404 -MRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIA 456
               ++A GMA+ L   +       H      N L      LT  + AK+ D     +I 
Sbjct: 168 HFSSQVAQGMAF-LASKN-----CIHRDVAARNVL------LTNGHVAKIGDFGLARDIM 215

Query: 457 MAE--MAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLE 504
                +   + +L     AP +      +++S+V+++G+LL+E+ + G  PY        
Sbjct: 216 NDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPY-------- 267

Query: 505 DWAADYLSGVQPLQQFVD----------PTLSSFDEEQLETLGELIKSCVRADPEKRPTM 554
                   G+    +F            P  +       + +  ++++C   +P  RPT 
Sbjct: 268 -------PGILVNSKFYKLVKDGYQMAQPAFAP------KNIYSIMQACWALEPTHRPTF 314

Query: 555 RDIAAILREI 564
           + I + L+E 
Sbjct: 315 QQICSFLQEQ 324

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 65/340 (19%), Positives = 109/340 (32%), Gaps = 119/340 (35%)

Query: 287 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA------SAKDWPK 340
           + ++  S +      F   +G    G VYKG L  G      + +VA       A+    
Sbjct: 3   LKEISLSAVR-----FMEELGEDRFGKVYKGHL-FGPAPGEQTQAVAIKTLKDKAEG--- 53

Query: 341 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL------------ 388
            L  +FR +    +++ H N V L+G   +++P    M+F Y  +G L            
Sbjct: 54  PLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPL--SMIFSYCSHGDLHEFLVMRSPHSD 111

Query: 389 --FEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH----- 437
                        L+      +  +IA GM Y L          +H+      VH     
Sbjct: 112 VGSTDDDRTVKSALEPPDFVHLVAQIAAGMEY-LS---------SHHV-----VHKDLAT 156

Query: 438 ----LTEDYAAKLSDLSF-----------------------WNEIAMAEMAATSKKLSSA 470
               + +    K+SD                          W    MA  A    K S  
Sbjct: 157 RNVLVYDKLNVKISD--LGLFREVYAADYYKLLGNSLLPIRW----MAPEAIMYGKFSID 210

Query: 471 PSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD------P 523
                 S+++++GV+L+E+ + G  PY               S    ++   +      P
Sbjct: 211 ------SDIWSYGVVLWEVFSYGLQPY---------CG---YSNQDVVEMIRNRQVLPCP 252

Query: 524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
                       +  L+  C    P +RP  +DI + LR 
Sbjct: 253 DDCP------AWVYALMIECWNEFPSRRPRFKDIHSRLRA 286

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 59/303 (19%), Positives = 99/303 (32%), Gaps = 60/303 (19%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
             S+++G      V++G     G   A+   +  S     + ++VQ R+  + L K+NHK
Sbjct: 12  LLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL---RPVDVQMRE-FEVLKKLNHK 67

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-------IKESEHLDWGMRLRIAMGM 412
           N V L    EE     ++++ E+ P G+L+  +        + ESE L   +R  +  GM
Sbjct: 68  NIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIV-LR-DVVGGM 125

Query: 413 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK- 465
            +      +    I H      N +             KL+D     E+   E   +   
Sbjct: 126 NHL----RENG--IVHRNIKPGNIMRVIGED--GQSVYKLTDFGAARELEDDEQFVSLYG 177

Query: 466 --------KLSSAPSASLESNVYN-------FGVLLFEMVTGRLPYLVDNGS-------- 502
                       A         Y         GV  +   TG LP+    G         
Sbjct: 178 TEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMY 237

Query: 503 --LEDWAADYLSGVQPLQ------QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTM 554
             +    +  +SGVQ  +          P   S        L  ++ + + AD EK    
Sbjct: 238 KIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGF 297

Query: 555 RDI 557
              
Sbjct: 298 DQF 300

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 50/275 (18%), Positives = 87/275 (31%), Gaps = 44/275 (16%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
            IG+   G   K    S+G  +    +   S        +     +++ L ++ H N V 
Sbjct: 13  TIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT--EAEKQ-MLVSEVNLLRELKHPNIVR 69

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHI--------HIKESEHLDWGMRLRIAMGMAYC 415
                 +    T  +V EY   G L   I        ++ E   L    +L +A      
Sbjct: 70  YYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLA------ 123

Query: 416 LEHMHQLNPP---IAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK---LSS 469
           L+  H+ +     + H  L  + V L      KL D      +      A +        
Sbjct: 124 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYM 183

Query: 470 APSASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
           +P   +    YN        G LL+E+     P+     S ++ A     G         
Sbjct: 184 SPEQ-MNRMSYNEKSDIWSLGCLLYELCALMPPF--TAFSQKELAGKIREGK------FR 234

Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
                + +E    L E+I   +      RP++ +I
Sbjct: 235 RIPYRYSDE----LNEIITRMLNLKDYHRPSVEEI 265

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 78.6 bits (194), Expect = 7e-16
 Identities = 61/327 (18%), Positives = 106/327 (32%), Gaps = 113/327 (34%)

Query: 302 FSNVIGSSPIGTVYKGT---LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKV- 356
               +G    G V       +         +V+V   KD     ++     +++ +  + 
Sbjct: 85  LGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG 144

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL--------------FEHIHIKESEHLDW 402
            HKN +NL+G C ++ P    ++ EYA  G L                 I+    E + +
Sbjct: 145 KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTF 202

Query: 403 G----MRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSF- 451
                   ++A GM Y L           H      N L      +TE+   K++D  F 
Sbjct: 203 KDLVSCTYQLARGMEY-LASQK-----CIHRDLAARNVL------VTENNVMKIAD--FG 248

Query: 452 ----------------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEM 489
                                 W    MA  A   +  +       +S+V++FGVL++E+
Sbjct: 249 LARDINNIDYYKKTTNGRLPVKW----MAPEALFDRVYTH------QSDVWSFGVLMWEI 298

Query: 490 VT-GRLPY-----------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLG 537
            T G  PY           L +   ++          +P                   L 
Sbjct: 299 FTLGGSPYPGIPVEELFKLLKEGHRMD----------KP-------------ANCTNELY 335

Query: 538 ELIKSCVRADPEKRPTMRDIAAILREI 564
            +++ C  A P +RPT + +   L  I
Sbjct: 336 MMMRDCWHAVPSQRPTFKQLVEDLDRI 362

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 77.7 bits (192), Expect = 8e-16
 Identities = 67/325 (20%), Positives = 106/325 (32%), Gaps = 124/325 (38%)

Query: 312 GTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNLIG 366
           G V K T  +         VA   V   K+     E++    + + L +VNH + + L G
Sbjct: 37  GKVVKATAFHLKGRAGYTTVA---VKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYG 93

Query: 367 FCEEEEPFTRMMVFEYAPNGTL----------------FEHIHIKESEHLDWGMRLR--- 407
            C ++ P   +++ EYA  G+L                        S        L    
Sbjct: 94  ACSQDGPL--LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGD 151

Query: 408 -------IAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSF--- 451
                  I+ GM Y L  M      + H      N L      + E    K+SD  F   
Sbjct: 152 LISFAWQISQGMQY-LAEMK-----LVHRDLAARNIL------VAEGRKMKISD--FGLS 197

Query: 452 --------------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT 491
                               W    MA  +      ++      +S+V++FGVLL+E+VT
Sbjct: 198 RDVYEEDSYVKRSQGRIPVKW----MAIESLFDHIYTT------QSDVWSFGVLLWEIVT 247

Query: 492 -GRLPY-----------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGEL 539
            G  PY           L     +E          +P             +   E +  L
Sbjct: 248 LGGNPYPGIPPERLFNLLKTGHRME----------RP-------------DNCSEEMYRL 284

Query: 540 IKSCVRADPEKRPTMRDIAAILREI 564
           +  C + +P+KRP   DI+  L ++
Sbjct: 285 MLQCWKQEPDKRPVFADISKDLEKM 309

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 58/326 (17%), Positives = 102/326 (31%), Gaps = 106/326 (32%)

Query: 302 FSNVIGSSPIGTVYKGTLSN----GVEIAVASV----SVASAKDWPKNLEVQFRKKIDTL 353
           +   IG    G V++              VA V      ASA       +  F+++   +
Sbjct: 51  YVRDIGEGAFGRVFQARAPGLLPYEPFTMVA-VKMLKEEASADM-----QADFQREAALM 104

Query: 354 SKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMA 413
           ++ ++ N V L+G C   +P    ++FEY   G L E +       +       ++    
Sbjct: 105 AEFDNPNIVKLLGVCAVGKPM--CLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRAR 162

Query: 414 YCLEHMHQLNPP--------IAH--NYLNSSA-VH---------LTEDYAAKLSDLSF-- 451
                   L+          +A    YL+    VH         + E+   K++D  F  
Sbjct: 163 VSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIAD--FGL 220

Query: 452 ---------------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMV 490
                                W    M   +    + ++      ES+V+ +GV+L+E+ 
Sbjct: 221 SRNIYSADYYKADGNDAIPIRW----MPPESIFYNRYTT------ESDVWAYGVVLWEIF 270

Query: 491 T-GRLPY-----------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE 538
           + G  PY           + D   L            P             E     L  
Sbjct: 271 SYGLQPYYGMAHEEVIYYVRDGNILA----------CP-------------ENCPLELYN 307

Query: 539 LIKSCVRADPEKRPTMRDIAAILREI 564
           L++ C    P  RP+   I  IL+ +
Sbjct: 308 LMRLCWSKLPADRPSFCSIHRILQRM 333

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 61/327 (18%), Positives = 106/327 (32%), Gaps = 113/327 (34%)

Query: 302 FSNVIGSSPIGTVYKGT---LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKV- 356
               +G    G V       +         +V+V   KD     ++     +++ +  + 
Sbjct: 39  LGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG 98

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL--------------FEHIHIKESEHLDW 402
            HKN +NL+G C ++ P    ++ EYA  G L                 I+    E + +
Sbjct: 99  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTF 156

Query: 403 G----MRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSF- 451
                   ++A GM Y L           H      N L      +TE+   K++D  F 
Sbjct: 157 KDLVSCTYQLARGMEY-LASQK-----CIHRDLAARNVL------VTENNVMKIAD--FG 202

Query: 452 ----------------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEM 489
                                 W    MA  A   +  +       +S+V++FGVL++E+
Sbjct: 203 LARDINNIDYYKKTTNGRLPVKW----MAPEALFDRVYTH------QSDVWSFGVLMWEI 252

Query: 490 VT-GRLPY-----------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLG 537
            T G  PY           L +   ++          +P                   L 
Sbjct: 253 FTLGGSPYPGIPVEELFKLLKEGHRMD----------KP-------------ANCTNELY 289

Query: 538 ELIKSCVRADPEKRPTMRDIAAILREI 564
            +++ C  A P +RPT + +   L  I
Sbjct: 290 MMMRDCWHAVPSQRPTFKQLVEDLDRI 316

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 66/345 (19%), Positives = 113/345 (32%), Gaps = 113/345 (32%)

Query: 312 GTVYKGT---LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKV-NHKNFVNLIG 366
           G V       L       V  V+V   K      ++     +++ +  +  HKN +NL+G
Sbjct: 83  GQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLG 142

Query: 367 FCEEEEPFTRMMVFEYAPNGTL----------FEHIHIKESEHLDWGMRLR--------I 408
            C ++ P    ++ EYA  G L                  S + +  +  +        +
Sbjct: 143 ACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQV 200

Query: 409 AMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSF----------- 451
           A GM Y L           H      N L      +TED   K++D  F           
Sbjct: 201 ARGMEY-LASKK-----CIHRDLAARNVL------VTEDNVMKIAD--FGLARDIHHIDY 246

Query: 452 ------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPY-- 496
                       W    MA  A   +  +       +S+V++FGVLL+E+ T G  PY  
Sbjct: 247 YKKTTNGRLPVKW----MAPEALFDRIYTH------QSDVWSFGVLLWEIFTLGGSPYPG 296

Query: 497 ---------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRAD 547
                    L +   ++          +P                   L  +++ C  A 
Sbjct: 297 VPVEELFKLLKEGHRMD----------KP-------------SNCTNELYMMMRDCWHAV 333

Query: 548 PEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI 592
           P +RPT + +   L  I  +T +  +         + +I +TE +
Sbjct: 334 PSQRPTFKQLVEDLDRIVALTSNQEMGYYHHHHHHDYDIPTTENL 378

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 70/284 (24%), Positives = 102/284 (35%), Gaps = 65/284 (22%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
            IG      VY+   L +GV +A+  V +    D  K       K+ID L ++NH N + 
Sbjct: 39  KIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMD-AKARA-DCIKEIDLLKQLNHPNVIK 96

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHI--------HIKESEHLDWGMRLRIAMGMAYC 415
                 E+      +V E A  G L   I         I E     + ++L  A      
Sbjct: 97  YYASFIEDNEL--NIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSA------ 148

Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSAS- 474
           LEHMH     + H  +  + V +T     KL DL               +  SS  +A+ 
Sbjct: 149 LEHMHSRR--VMHRDIKPANVFITATGVVKLGDLGL------------GRFFSSKTTAAH 194

Query: 475 -------------LESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV 514
                        +  N YNF       G LL+EM   + P+  D  +L           
Sbjct: 195 SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCD 254

Query: 515 QPLQQFVDPTLSS-FDEEQLETLGELIKSCVRADPEKRPTMRDI 557
            P      P  S  + EE    L +L+  C+  DPEKRP +  +
Sbjct: 255 YP------PLPSDHYSEE----LRQLVNMCINPDPEKRPDVTYV 288

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 75.0 bits (185), Expect = 6e-15
 Identities = 61/325 (18%), Positives = 106/325 (32%), Gaps = 91/325 (28%)

Query: 287 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA--------SAKDW 338
           + ++ R  +          +G    G VY+G + +G+    + + VA        S +D 
Sbjct: 24  LKEVPRKNIT-----LIRGLGHGAFGEVYEGQV-SGMPNDPSPLQVAVKTLPEVCSEQD- 76

Query: 339 PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI-----H 393
               E+ F  +   +SK NH+N V  IG   +  P    ++ E    G L   +      
Sbjct: 77  ----ELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--FILMELMAGGDLKSFLRETRPR 130

Query: 394 IKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYA 443
             +   L       +   IA G  Y LE  H       H      N L +          
Sbjct: 131 PSQPSSLAMLDLLHVARDIACGCQY-LEENH-----FIHRDIAARNCLLTCP---GPGRV 181

Query: 444 AKLSDLSFWNEIAMAE-MAATSKKLS----SAPSA------SLESNVYNFGVLLFEMVT- 491
           AK+ D     +I  A         +       P A      + +++ ++FGVLL+E+ + 
Sbjct: 182 AKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSL 241

Query: 492 GRLPY-----------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELI 540
           G +PY           +   G ++           P             +     +  ++
Sbjct: 242 GYMPYPSKSNQEVLEFVTSGGRMD----------PP-------------KNCPGPVYRIM 278

Query: 541 KSCVRADPEKRPTMRDIAAILREIT 565
             C +  PE RP    I   +   T
Sbjct: 279 TQCWQHQPEDRPNFAIILERIEYCT 303

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 75.7 bits (186), Expect = 7e-15
 Identities = 61/310 (19%), Positives = 102/310 (32%), Gaps = 60/310 (19%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
             S+++G      V++G     G   A+   +  S     + ++VQ R+  + L K+NHK
Sbjct: 12  LLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL---RPVDVQMRE-FEVLKKLNHK 67

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-------IKESEHLDWGMRLRIAMGM 412
           N V L    EE     ++++ E+ P G+L+  +        + ESE L   +R  +  GM
Sbjct: 68  NIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIV-LR-DVVGGM 125

Query: 413 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK- 465
            +      +    I H      N +             KL+D     E+   E   +   
Sbjct: 126 NHL----RENG--IVHRNIKPGNIMRVIGED--GQSVYKLTDFGAARELEDDEQFVSLYG 177

Query: 466 --------KLSSAPSASLESNVYN-------FGVLLFEMVTGRLPYLVDNGSLEDW---- 506
                       A         Y         GV  +   TG LP+    G   +     
Sbjct: 178 TEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMY 237

Query: 507 ------AADYLSGVQPLQ------QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTM 554
                  +  +SGVQ  +          P   S        L  ++ + + AD EK    
Sbjct: 238 KIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGF 297

Query: 555 RDIAAILREI 564
               A   +I
Sbjct: 298 DQFFAETSDI 307

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 58/320 (18%), Positives = 102/320 (31%), Gaps = 99/320 (30%)

Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA--SAKDWPKNLEVQ-FRKKIDTLSKV-N 357
               +G    G V +     G++      +VA    K+   + E +    ++  L  + +
Sbjct: 31  LGKPLGRGAFGQVIEADA-FGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGH 89

Query: 358 HKNFVNLIGFC-EEEEPFTRMMVFEYAPNGTL----------FEHIHIKESEHLDWGMRL 406
           H N VNL+G C +   P   M++ E+   G L          F    +   +     + L
Sbjct: 90  HLNVVNLLGACTKPGGPL--MVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTL 147

Query: 407 R--------IAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSF- 451
                    +A GM + L           H      N L      L+E    K+ D  F 
Sbjct: 148 EHLICYSFQVAKGMEF-LASRK-----CIHRDLAARNIL------LSEKNVVKICD--FG 193

Query: 452 ----------------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEM 489
                                 W    MA      +  +       +S+V++FGVLL+E+
Sbjct: 194 LARDIYKDPDYVRKGDARLPLKW----MAPETIFDRVYTI------QSDVWSFGVLLWEI 243

Query: 490 VT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCV 544
            + G  PY                GV+  ++F                   + + +  C 
Sbjct: 244 FSLGASPY---------------PGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCW 288

Query: 545 RADPEKRPTMRDIAAILREI 564
             +P +RPT  ++   L  +
Sbjct: 289 HGEPSQRPTFSELVEHLGNL 308

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 50/281 (17%), Positives = 106/281 (37%), Gaps = 59/281 (20%)

Query: 307 GSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF--VNL 364
           G S    V++         A+  V++  A          +R +I  L+K+   +   + L
Sbjct: 39  GGS--SKVFQVLNEKKQIYAIKYVNLEEAD---NQTLDSYRNEIAYLNKLQQHSDKIIRL 93

Query: 365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP 424
             +   ++     MV E   N  L   +  K+ + +D   R      M   +  +HQ   
Sbjct: 94  YDYEITDQYI--YMVMECG-NIDLNSWL--KKKKSIDPWERKSYWKNMLEAVHTIHQHG- 147

Query: 425 PIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIA-----------------MA--- 458
            I H      N+L      + +    KL D    N++                  M    
Sbjct: 148 -IVHSDLKPANFL------IVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEA 199

Query: 459 --EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
             +M+++ +   S    S +S+V++ G +L+ M  G+ P+      + +  +   + + P
Sbjct: 200 IKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPF----QQIINQISKLHAIIDP 255

Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             +   P +   D      L +++K C++ DP++R ++ ++
Sbjct: 256 NHEIEFPDIPEKD------LQDVLKCCLKRDPKQRISIPEL 290

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 63/331 (19%), Positives = 104/331 (31%), Gaps = 103/331 (31%)

Query: 287 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSN----GVEIAVASV----SVASAKDW 338
           + ++ R  +          +G    G VY+G +S        + VA V     V S +D 
Sbjct: 65  LKEVPRKNIT-----LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVA-VKTLPEVCSEQD- 117

Query: 339 PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI-----H 393
               E+ F  +   +SK NH+N V  IG   +  P    ++ E    G L   +      
Sbjct: 118 ----ELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--FILLELMAGGDLKSFLRETRPR 171

Query: 394 IKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYA 443
             +   L       +   IA G  Y LE  H       H      N L +          
Sbjct: 172 PSQPSSLAMLDLLHVARDIACGCQY-LEENH-----FIHRDIAARNCLLTCP---GPGRV 222

Query: 444 AKLSDLSFWNEIA-----------------MAEMAATSKKLSSAPSASLESNVYNFGVLL 486
           AK+ D     +I                  M   A      +S      +++ ++FGVLL
Sbjct: 223 AKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTS------KTDTWSFGVLL 276

Query: 487 FEMVT-GRLPY-----------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE 534
           +E+ + G +PY           +   G ++           P             +    
Sbjct: 277 WEIFSLGYMPYPSKSNQEVLEFVTSGGRMD----------PP-------------KNCPG 313

Query: 535 TLGELIKSCVRADPEKRPTMRDIAAILREIT 565
            +  ++  C +  PE RP    I   +   T
Sbjct: 314 PVYRIMTQCWQHQPEDRPNFAIILERIEYCT 344

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 48/308 (15%), Positives = 98/308 (31%), Gaps = 67/308 (21%)

Query: 312 GTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFC- 368
             VY+   + +G E A+  +     +           +++  + K+  H N V       
Sbjct: 42  AFVYEAQDVGSGREYALKRLLSNEEEK-----NRAIIQEVCFMKKLSGHPNIVQFCSAAS 96

Query: 369 ----EEEEPFTRMMVFEYAPNGTLFEHI-------HIKESEHLDWGMRLRIAMGMAYCLE 417
               E +      ++      G L E +        +           L+I       ++
Sbjct: 97  IGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDT------VLKIFYQTCRAVQ 150

Query: 418 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLES 477
           HMH+  PPI H  L    + L+     KL D      I+     + S +  +     +  
Sbjct: 151 HMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITR 210

Query: 478 N-----------------VYN-------FGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 513
           N                            G +L+ +   + P+  D   L       ++G
Sbjct: 211 NTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPF-EDGAKLR-----IVNG 264

Query: 514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG---ITPD 570
                ++  P   +           LI++ ++ +PE+R ++ ++   L+EI     + P 
Sbjct: 265 -----KYSIPPHDTQYTV----FHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARNVNPK 315

Query: 571 GAIPKLSP 578
             I +L  
Sbjct: 316 SPITELLE 323

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 50/276 (18%), Positives = 99/276 (35%), Gaps = 55/276 (19%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
            IG    G         +G +  +  ++++      +    + R+++  L+ + H N V 
Sbjct: 31  KIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKERE---ESRREVAVLANMKHPNIVQ 87

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 423
                EE       +V +Y   G LF+ I+ ++         L   + +   L+H+H   
Sbjct: 88  YRESFEENGSL--YIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK 145

Query: 424 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSAS--------- 474
             I H  + S  + LT+D   +L D               ++ L+S    +         
Sbjct: 146 --ILHRDIKSQNIFLTKDGTVQLGDFGI------------ARVLNSTVELARACIGTPYY 191

Query: 475 -----LESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSG-VQPLQQFV 521
                 E+  YN        G +L+E+ T +  +  + GS+++     +SG   P+    
Sbjct: 192 LSPEICENKPYNNKSDIWALGCVLYELCTLKHAF--EAGSMKNLVLKIISGSFPPVSLHY 249

Query: 522 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
              L S           L+    + +P  RP++  I
Sbjct: 250 SYDLRS-----------LVSQLFKRNPRDRPSVNSI 274

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 72.9 bits (179), Expect = 5e-14
 Identities = 52/282 (18%), Positives = 108/282 (38%), Gaps = 61/282 (21%)

Query: 307 GSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF--VNL 364
           G S    V++         A+  V++  A    + L+  +R +I  L+K+   +   + L
Sbjct: 67  GGS--SKVFQVLNEKKQIYAIKYVNLEEAD--NQTLD-SYRNEIAYLNKLQQHSDKIIRL 121

Query: 365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP 424
             +   ++     MV E   N  L   +  K+ + +D   R      M   +  +HQ   
Sbjct: 122 YDYEITDQYI--YMVMECG-NIDLNSWL--KKKKSIDPWERKSYWKNMLEAVHTIHQHG- 175

Query: 425 PIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIA-----------------MA--- 458
            I H      N+L      + +    KL D    N++                  M    
Sbjct: 176 -IVHSDLKPANFL------IVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEA 227

Query: 459 --EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
             +M+++ +   S    S +S+V++ G +L+ M  G+ P+              ++ +  
Sbjct: 228 IKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPF-----------QQIINQISK 276

Query: 517 LQQFVDPTLSSFDEEQLET-LGELIKSCVRADPEKRPTMRDI 557
           L   +DP       +  E  L +++K C++ DP++R ++ ++
Sbjct: 277 LHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPEL 318

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 50/281 (17%), Positives = 106/281 (37%), Gaps = 59/281 (20%)

Query: 307 GSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF--VNL 364
           G S    V++         A+  V++  A          +R +I  L+K+   +   + L
Sbjct: 20  GGS--SKVFQVLNEKKQIYAIKYVNLEEAD---NQTLDSYRNEIAYLNKLQQHSDKIIRL 74

Query: 365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP 424
             +   ++     MV E   N  L   +  K+ + +D   R      M   +  +HQ   
Sbjct: 75  YDYEITDQYI--YMVMECG-NIDLNSWL--KKKKSIDPWERKSYWKNMLEAVHTIHQHG- 128

Query: 425 PIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIA-----------------MA--- 458
            I H      N+L      + +    KL D    N++                  M    
Sbjct: 129 -IVHSDLKPANFL------IVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEA 180

Query: 459 --EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
             +M+++ +   S    S +S+V++ G +L+ M  G+ P+      + +  +   + + P
Sbjct: 181 IKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPF----QQIINQISKLHAIIDP 236

Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             +   P +   D      L +++K C++ DP++R ++ ++
Sbjct: 237 NHEIEFPDIPEKD------LQDVLKCCLKRDPKQRISIPEL 271

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 43/281 (15%), Positives = 87/281 (30%), Gaps = 75/281 (26%)

Query: 312 GTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE 370
           G V+K     +G    +  V   + K           +++  L+K++H N V+  G  + 
Sbjct: 25  GQVFKAKHRIDGKTYVIKRVKYNNEK---------AEREVKALAKLDHVNIVHYNGCWDG 75

Query: 371 EEPFTRM--------------MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 416
            +                   +  E+   GTL + I  +  E LD  + L +   +   +
Sbjct: 76  FDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGV 135

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSAS-- 474
           +++H     + +  L  S + L +    K+ D                  L +    +  
Sbjct: 136 DYIHSKK--LINRDLKPSNIFLVDTKQVKIGDFGL------------VTSLKNDGKRTRS 181

Query: 475 -----------LESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
                      + S  Y         G++L E++               +  D   G+  
Sbjct: 182 KGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAF----ETSKFFTDLRDGIIS 237

Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
                      FD++       L++  +   PE RP   +I
Sbjct: 238 ---------DIFDKK----EKTLLQKLLSKKPEDRPNTSEI 265

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 71.3 bits (174), Expect = 4e-13
 Identities = 55/301 (18%), Positives = 99/301 (32%), Gaps = 66/301 (21%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
           +    +G+   G V +      G ++A+        +  PKN E    + I  + K+NH 
Sbjct: 17  EMKERLGTGGFGYVLRWIHQDTGEQVAIKQCR---QELSPKNRERWCLE-IQIMKKLNHP 72

Query: 360 NFVNLIGFCEEEEPFTRM----MVFEYAPNGTLFEHIHIKESEHLDWGMR-------LR- 407
           N V+     +  +         +  EY   G L ++++  E+     G++       L  
Sbjct: 73  NVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCC---GLKEGPIRTLLSD 129

Query: 408 IAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA 461
           I+  + Y     H+    I H      N +        +    K+ DL +  E+   E+ 
Sbjct: 130 ISSALRYL----HENR--IIHRDLKPENIVLQPG---PQRLIHKIIDLGYAKELDQGELC 180

Query: 462 ATSKKLSS----APSASLESNVYN-------FGVLLFEMVTGRLPYLVDN---------- 500
                + +    AP   LE   Y        FG L FE +TG  P+L +           
Sbjct: 181 TEF--VGTLQYLAPEL-LEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVR 237

Query: 501 GSLEDWAADYLSGVQPLQ---QFVDPT-LSSFDEEQLETLGELIKSCVRADPEKRPTMRD 556
               +    Y      ++       P  LS     +LE     ++  +     +R T   
Sbjct: 238 EKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLE---RWLQCMLMWHQRQRGTDPQ 294

Query: 557 I 557
            
Sbjct: 295 N 295

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 33/268 (12%), Positives = 79/268 (29%), Gaps = 73/268 (27%)

Query: 336 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLFEHIHI 394
           K   K+    F+ ++  ++ + ++  +   G          + +++EY  N ++ +    
Sbjct: 80  KISIKSKYDDFKNELQIITDIKNEYCLTCEGIITNY---DEVYIIYEYMENDSILKFDEY 136

Query: 395 KESEHLDWGMRLR----------IAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHL 438
                 ++   +           +    +Y     +     I H      N L      +
Sbjct: 137 FFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKN-----ICHRDVKPSNIL------M 185

Query: 439 TEDYAAKLSDLSF-WNEIAMAEMAATS--------------KKLSSAPSA---SLESNVY 480
            ++   KLSD  F  +E  + +    S              +   +       SL     
Sbjct: 186 DKNGRVKLSD--FGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSL----- 238

Query: 481 NFGVLLFEMVTGRLPYLVD-----------NGSLEDWAADYLSGVQPLQQFVDPTLSSFD 529
             G+ L+ M    +P+ +              ++E              +    + +   
Sbjct: 239 --GICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLS 296

Query: 530 EEQLETLGELIKSCVRADPEKRPTMRDI 557
            E      + +K  +R +P +R T  D 
Sbjct: 297 NE----DIDFLKLFLRKNPAERITSEDA 320

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 34/283 (12%), Positives = 85/283 (30%), Gaps = 61/283 (21%)

Query: 312 GTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE 370
           G V++     +    A+  + +   ++  +    +  +++  L+K+ H   V       E
Sbjct: 19  GVVFEAKNKVDDCNYAIKRIRL-PNRELARE---KVMREVKALAKLEHPGIVRYFNAWLE 74

Query: 371 EEPFTRM----------MVFEYAPNGTLFEHIHI-KESEHLDWGMRLRIAMGMAYCLEHM 419
           +    ++          +  +      L + ++     E  +  + L I + +A  +E +
Sbjct: 75  KNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFL 134

Query: 420 HQLNPPIAHNYLNSSAVHLTEDYAAKLSDL----SFWNEIAMAEMAATSKKLSSAPSAS- 474
           H     + H  L  S +  T D   K+ D     +   +     +       +       
Sbjct: 135 HSKG--LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVG 192

Query: 475 ---------LESNVYNF-------GVLLFEMV----TGRLPYLVDNGSLEDWAADYLSGV 514
                    +  N Y+        G++LFE++    T                       
Sbjct: 193 TKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRT---------------- 236

Query: 515 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             L    +        ++      +++  +   P +RP   +I
Sbjct: 237 --LTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINI 277

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 53/302 (17%), Positives = 97/302 (32%), Gaps = 74/302 (24%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
           +   V+G    G V K     +    A+  +     K            ++  L+ +NH+
Sbjct: 9   EEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEK------LSTILSEVMLLASLNHQ 62

Query: 360 NFVNLIGFCEEEEPFTRM-----------MVFEYAPNGTLFEHIH---IKESEHLDWGMR 405
             V       E   F +            +  EY  NGTL++ IH   + +     W + 
Sbjct: 63  YVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLF 122

Query: 406 LRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS------- 450
            +I   ++Y     H     I H      N        + E    K+ D  L+       
Sbjct: 123 RQILEALSYI----HSQG--IIHRDLKPMNIF------IDESRNVKIGDFGLAKNVHRSL 170

Query: 451 FWNEIAMAEMAATSKKLSS--------APSASLESNVYNF-------GVLLFEMVTGRLP 495
              ++    +  +S  L+S        A      +  YN        G++ FEM+     
Sbjct: 171 DILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFST 230

Query: 496 YLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMR 555
            +     L+            L+         FD+ +++   ++I+  +  DP KRP  R
Sbjct: 231 GMERVNILKK-----------LRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGAR 279

Query: 556 DI 557
            +
Sbjct: 280 TL 281

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 67.4 bits (164), Expect = 3e-12
 Identities = 26/324 (8%), Positives = 77/324 (23%), Gaps = 45/324 (13%)

Query: 272 ATGLSGQLQKAFVTGVPKLKRSELEAACEDFS--NVIGSSPIGTVYKGT-LSNGVEIAVA 328
           A  +       +         S L            +       V+    +    + A+ 
Sbjct: 34  AAMVEAVTATVWPQNAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALK 93

Query: 329 SVSVASAKDWPKNLEVQ----------------------FRKKIDTLSKVNHKNFVNLIG 366
             ++ +     +   +                            D ++  +   F  L  
Sbjct: 94  VFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSP 153

Query: 367 FCEEEEPFTRMMVFEYAPNGTLFEHI-----HIKESEHLDWGMRLRIAMGMAYCLEHMHQ 421
             ++      +++   A +  L                        +   +     ++  
Sbjct: 154 GQDDYAVANYLLLMPAA-SVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQS 212

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--------AEMAATSKKLSSAPSA 473
               + H +     + +  D    L D+S   ++             A      +S  + 
Sbjct: 213 KG--LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATF 270

Query: 474 SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL 533
           +   N +  G+ ++ +    LP+ +    ++         V         + +   +   
Sbjct: 271 THALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDF-- 328

Query: 534 ETLGELIKSCVRADPEKRPTMRDI 557
             +  LI   +  D  +R    + 
Sbjct: 329 --VKTLIGRFLNFDRRRRLLPLEA 350

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 67.3 bits (164), Expect = 3e-12
 Identities = 30/304 (9%), Positives = 75/304 (24%), Gaps = 77/304 (25%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPK----------------------- 340
           V+G        + T    G    V                                    
Sbjct: 80  VLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQA 139

Query: 341 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYA--PNGTLFEHI--HIKE 396
            + ++F    D +     K  + +     +    +R  ++        T  E +  H   
Sbjct: 140 KVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSST 199

Query: 397 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD-- 448
            + L    RL++ + +   L  +H     + H      + +      L +     L+   
Sbjct: 200 HKSLVHHARLQLTLQVIRLLASLHHYG--LVHTYLRPVDIV------LDQRGGVFLTGFE 251

Query: 449 LSFWN---------------EIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGR 493
               +               E+       +  +       +   + +  G++++ +    
Sbjct: 252 HLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTL-MTFSFDAWALGLVIYWIWCAD 310

Query: 494 LPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 553
           LP               L G + + +     +        + +  L++  +R   E R  
Sbjct: 311 LPI---------TKDAALGGSEWIFRSC-KNIP-------QPVRALLEGFLRYPKEDRLL 353

Query: 554 MRDI 557
               
Sbjct: 354 PLQA 357

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.8 bits (166), Expect = 5e-12
 Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 9/106 (8%)

Query: 5   CRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF--- 61
             N +      T   +  +L  +  + + N      +P     L E+++++   N     
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288

Query: 62  -----SGPLPNDLGINHSLTILLLDNNDF-VGSLSPEIYKLQVLSE 101
                      D  +   + I+ +  N+     +   + K++ L  
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 14/110 (12%)

Query: 5   CRNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            + L  L           P   S   + S+ L  N  + I     G  E++E L F HN 
Sbjct: 329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388

Query: 61  FSGPLPNDLGIN--HSLTILLLDNNDFVG-------SLSPEIYKLQVLSE 101
               +PN         ++ +    N+           L P  +K   +S 
Sbjct: 389 LKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 4e-11
 Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 20/116 (17%)

Query: 5   CRNLKDLCLEG------------TLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEEL 51
              L  + L G                  ++   + SI LR N  + +  +     L  L
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515

Query: 52  EVLDFGHNNFSGPLPNDLGINHSLTIL------LLDNNDFVGSLSPEIYKLQVLSE 101
             +D  +N+FS   P     + +L             N  +      I     L++
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 4e-11
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 9   KDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP--- 64
           K+L + G      + S   +  + L     SG +P+  G+L ELEVL  G +        
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123

Query: 65  -LPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 100
             P  +  N S          +  +      +     
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 8e-11
 Identities = 19/119 (15%), Positives = 31/119 (26%), Gaps = 25/119 (21%)

Query: 5   CRNLKDLCLE------------GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELE 52
              +  +                 L P      ++ SI L NN  S    E F     L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 53  VLDFGHNNFSG-------PLPNDLGINHSLTILLLDNNDFVGSLSPEIY-----KLQVL 99
            ++   N  +            +    + LT + L  N     LS +        L  +
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGI 518

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 7/98 (7%)

Query: 8   LKDLCLEGTLAPEIQSLTHIKSIILRNNSF-SGIIPEGFGELEELEVLDFGHNNFSGPLP 66
            + L  +     +      I+ I +  N+  +  +     ++++L +L+  +N   G   
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KL 346

Query: 67  NDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 100
              G    L  L L  N     +         +++ LS
Sbjct: 347 PAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLS 383

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 13/110 (11%)

Query: 5   CRNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGH 58
              L  L L       +          ++++   +N    I        +  +  +DF +
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411

Query: 59  NNFSG-------PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
           N           PL        +++ + L NN               LS 
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 11/111 (9%), Positives = 32/111 (28%), Gaps = 6/111 (5%)

Query: 7   NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSG----IIPEGFGELEELEVLDFGHNNFS 62
           +L+     G +   I  LT ++ + L ++          P+G       E       ++ 
Sbjct: 87  SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146

Query: 63  GPLPNDLGINH--SLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 111
               +         L    ++++    S+          ++       ++ 
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 13/110 (11%), Positives = 32/110 (29%), Gaps = 20/110 (18%)

Query: 7   NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP 66
            +     + ++    +       I   +N+ + +  +    L +L     G++ F     
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENI 223

Query: 67  -----------------NDLGINH--SLTILLLDNNDFVGSLSPEIYKLQ 97
                             DL  ++   LT + + N   +  L   +  L 
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 10/97 (10%), Positives = 28/97 (28%), Gaps = 1/97 (1%)

Query: 5   CRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 64
              L+   +  +           ++               +  L++L  ++  +      
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264

Query: 65  LPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
           LP  L     + ++ +  N  + S        Q L++
Sbjct: 265 LPTFLKALPEMQLINVACNRGI-SGEQLKDDWQALAD 300

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 13/106 (12%)

Query: 5   CRNLKDLCLEG----TLAPEIQSLTHIKSIILRN------NSFSGIIPEGFGELEELEVL 54
              L  + L          +  + + +K   +RN      N      PEG      L  L
Sbjct: 512 LPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

Query: 55  DFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 100
             G N+    +   +  N  +++L + +N  +      +       
Sbjct: 572 QIGSNDIRK-VNEKITPN--ISVLDIKDNPNISIDLSYVCPYIEAG 614

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 10/100 (10%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 6   RNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 63
           +    +  + T       +  + +    + ++     I +      +   +    NN + 
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 64  PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQ 103
            +   +     L    + N+ FV     E ++ +    +Q
Sbjct: 198 -VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 3/71 (4%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
                   I     +  + + +N    +  E       + VLD   N       + +   
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRKV-NEKI--TPNISVLDIKDNPNISIDLSYVCPY 610

Query: 73  HSLTILLLDNN 83
               + +L  +
Sbjct: 611 IEAGMYMLFYD 621

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.4 bits (165), Expect = 7e-12
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 5   CRNLKDL-----CLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
              L+ L      ++       QSL+H+ ++IL  N    +    F  L  L+ L     
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 60  NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 100
           N +      +G   +L  L + +N       PE       L+ L 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 8e-12
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 13  LEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGI 71
            +    P+I   L ++  + L       + P  F  L  L+VL+  HNNF          
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 72  NHSLTILLLDNNDFVG----SLSPEIYKLQVL 99
            +SL +L    N  +      L      L  L
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 8e-12
 Identities = 15/89 (16%), Positives = 24/89 (26%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
           L    +    S   ++ + L       I    +  L  L  L    N             
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 73  HSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
            SL  L+    +     +  I  L+ L E
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKE 128

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 5   CRNLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
             +L  L L G    +LA      L+ ++ ++    + + +     G L+ L+ L+  HN
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 60  NF-SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV 104
              S  LP       +L  L L +N        ++  L  +    +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 7/104 (6%)

Query: 5   CRNLKDL-----CLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 58
              L+ L      L+      +  SL ++  + + +          F  L  LEVL    
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 59  NNFSGPLPND-LGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
           N+F      D      +LT L L               L  L  
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 15/77 (19%), Positives = 22/77 (28%)

Query: 25  THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND 84
              K++ L  N    +    F    EL+VLD                   L+ L+L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 85  FVGSLSPEIYKLQVLSE 101
                      L  L +
Sbjct: 88  IQSLALGAFSGLSSLQK 104

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 7/102 (6%)

Query: 5   CRNLKDLCLEGTLAPEIQSLTHIKSIILRNN--SFSGIIPEGFGELEELEVLDFGHNNFS 62
            + L     +G  A     L  ++ + L  N  SF G   +       L+ LD   N   
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 63  GPLPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 100
             + ++      L  L   +++        ++     L  L 
Sbjct: 387 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 5   CRNLKDLCL------EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEV----L 54
            + LK+L +         L     +LT+++ + L +N    I       L ++ +    L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 55  DFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE-IYKLQVLSESQVDEGQLSS 111
           D   N  +   P        L  L L NN    ++    I  L  L   ++  G+  +
Sbjct: 183 DLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 5   CRNLKDLCL-----EGTLAPEIQSLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGH 58
             +L+ L              I  L  +K + + +N      +PE F  L  LE LD   
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 59  NNFSGPLPNDLGINHSLTILL----LDNNDFVGSLSPEIYK---LQVLS 100
           N        DL + H + +L     L  N     + P  +K   L  L+
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLT 206

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 13/104 (12%), Positives = 30/104 (28%), Gaps = 8/104 (7%)

Query: 5   CRNLKDL-----CLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEE-LEVLDFGH 58
             +L+ L               + L  ++ +    N       +        L  L+   
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 59  NNFSGPLPNDLGIN--HSLTILLLDNNDFVGSLSPEIYKLQVLS 100
           N+F+    +   +        LL++      +   +   + VLS
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 5/94 (5%)

Query: 13  LEGTLAPEIQSLTHIKSIILR---NNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDL 69
           LE      ++ L ++     R    + +   I + F  L  +                  
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--F 300

Query: 70  GINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQ 103
             N     L L N  F    + ++  L+ L+ + 
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 45/251 (17%), Positives = 86/251 (34%), Gaps = 48/251 (19%)

Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF---EYAPNGTLFEHIHIKESEHLDW 402
              +   L++V H + V +  F E  +     + +   EY    +L         + L  
Sbjct: 126 AMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKG----QKLPV 181

Query: 403 GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA 462
              +   + +   L ++H +   + +N L    + LTE+   KL DL          + +
Sbjct: 182 AEAIAYLLEILPALSYLHSIG--LVYNDLKPENIMLTEE-QLKLIDLG----AVSR-INS 233

Query: 463 TSKKLSS----AP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 513
                 +    AP       ++ +++Y  G  L  +                    Y+ G
Sbjct: 234 FGYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTR----------NGRYVDG 283

Query: 514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT----MR-DIAAILREITGIT 568
           +       DP L ++D       G L++  +  DP +R T    M   +  +LRE+    
Sbjct: 284 LPED----DPVLKTYDS-----YGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQD 334

Query: 569 PDGAIPKLSPL 579
                P LS +
Sbjct: 335 TGVPRPGLSTI 345

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 43/237 (18%), Positives = 94/237 (39%), Gaps = 52/237 (21%)

Query: 341 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLFEHIHIKESEH 399
            +E Q R++++  S + H N + L G+  +    TR+ ++ EYAP GT++  +  ++   
Sbjct: 51  GVEHQLRREVEIQSHLRHPNILRLYGYFHDA---TRVYLILEYAPLGTVYREL--QKLSK 105

Query: 400 LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 459
            D          +A  L + H     + H  +    + L      K++D  +      + 
Sbjct: 106 FDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIADFGW------SV 157

Query: 460 MAATSKKLSS-------APSASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLED 505
            A +S++           P   +E  +++        GVL +E + G+ P+  +  + ++
Sbjct: 158 HAPSSRRTDLCGTLDYLPPEM-IEGRMHDEKVDLWSLGVLCYEFLVGKPPF--EANTYQE 214

Query: 506 -----WAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
                   ++         F  P      E       +LI   ++ +P +RP +R++
Sbjct: 215 TYKRISRVEF--------TF--P--DFVTEG----ARDLISRLLKHNPSQRPMLREV 255

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 5/102 (4%)

Query: 5   CRNLKDL-----CLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
              L  L      +        Q L  +K + L++N  S +  + F     L  L    N
Sbjct: 48  YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 60  NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
           +      N      +L  L L +N    +      +L+ L E
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 5e-11
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 7   NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP 66
            L      G     ++ L+H+  + L +N F  I  E F +L EL+++D G NN +    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 67  NDLGINHSLTILLLDNNDFVG----SLSPEIYKLQVL 99
           +      SL  L L  N           P    L  L
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 7e-11
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 5/98 (5%)

Query: 5   CRNLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
              LK L L+      L+ +     T++  + L +NS   I    F + + L  LD  HN
Sbjct: 72  LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131

Query: 60  NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQ 97
             S           +L  LLL NN      S E+    
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 6   RNLKDL-----CLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELE--ELEVLDFGH 58
           +NL  L      L  T       L +++ ++L NN    +  E         L+ L+   
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 59  NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
           N      P        L  L L+N     SL+ ++      + 
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 6   RNLKDL-----CLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            N+  L      L    A      + + S+ +  N+ S + PE   +L  L+VL+  HN 
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 61  FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEI---YKLQVLS 100
            S           +LT L L +N      +        L  L 
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 5e-10
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 5   CRNLKDL-----CLEGTLAPEIQ---SLTHIKSIILRNNSFSGIIPEGFGELE--ELEVL 54
              L  L      L  +L  ++    + T I+++ L N+  S      F  L+   L +L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 55  DFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
           D  +NN +    +       L    L+ N+     S  ++ L  +  
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 14/67 (20%), Positives = 28/67 (41%)

Query: 24  LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 83
            T++  + L  N+ + +  + F  L +LE     +NN      + L    ++  L L  +
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 84  DFVGSLS 90
               S+S
Sbjct: 307 FTKQSIS 313

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 6e-10
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 5   CRNLKDL-----CLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 58
             +L+ L      +   L   E + L +I  I L  N +  +    F  +  L+ L    
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 59  NNFSG--PLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLSESQ 103
                    P+      +LTIL L NN+    ++ ++     KL++L    
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQH 513

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 6e-10
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 15  GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS--------GPLP 66
            +     Q L ++  + L NN+ + I  +    LE+LE+LD  HNN +        G   
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 67  NDLGINHSLTILLLDNNDFVGSLSPEIYK----LQVLS 100
             L     L IL L++N F   +  E++K    L+++ 
Sbjct: 530 YFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIID 566

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 5   CRNLKDL-----CLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
           C NL +L      ++           ++ ++ L +N  S        +LE L+ L   +N
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 60  NFSGPLPNDLGI--NHSLTILLLDNNDFVGSLSPE----IYKLQVLS 100
                   +L I  N SL  L L +N      SP     I +L  L 
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLF 201

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 5   CRNLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
             +L  L LE      +  E  + L  +K I L  N+ + +    F     L+ L+   N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594

Query: 60  NFSGPLPNDLGIN-HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVD 105
             +       G    +LT L +  N F  +     + +  ++E+  +
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTN 641

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 23  SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILLLD 81
           + + +  + L  N  S I  + F  L  LEVLD G N     L         ++  + L 
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 82  NNDFVGSLSPEIYKLQVLSE 101
            N ++         +  L  
Sbjct: 439 YNKYLQLTRNSFALVPSLQR 458

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 18/78 (23%), Positives = 27/78 (34%)

Query: 24  LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 83
            T+I  + L +N    +    F    +L  LD G N  S   P        L +L L +N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 84  DFVGSLSPEIYKLQVLSE 101
           +              L+E
Sbjct: 84  ELSQLSDKTFAFCTNLTE 101

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 23  SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGI---NHSLTILL 79
           + + +K + L +N      P  F  +  L  L   +      L   L +   N S+  L 
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 80  LDNNDFVGSLSPEIYKLQVLS 100
           L N+    + +     L+  +
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTN 249

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 9/98 (9%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL------- 65
           L          L  ++   L  N+   +       L  +  L+   +     +       
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 66  --PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
                      L  L +++ND  G  S     L  L  
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 14/95 (14%)

Query: 5   CRNLKDL-----CLEGTLAPEIQSLTHIKSIILRNN---------SFSGIIPEGFGELEE 50
              L+        ++   +  +  L +++ + L+ +         S   I    F  L+ 
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330

Query: 51  LEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF 85
           LE L+   N+  G   N      +L  L L N+  
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 64.7 bits (157), Expect = 3e-11
 Identities = 27/240 (11%), Positives = 69/240 (28%), Gaps = 46/240 (19%)

Query: 341 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYA--PNGTLFEHI--HIKE 396
            + ++F    D +     K  + +     +    +R  ++        T  E +  H   
Sbjct: 145 KVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSST 204

Query: 397 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 456
            + L    RL++ + +   L  +H     + H YL    + L +     L+         
Sbjct: 205 HKSLVHHARLQLTLQVIRLLASLHHYG--LVHTYLRPVDIVLDQRGGVFLTGFE----HL 258

Query: 457 MAEMAATSKKLSSAPSA-------------------SLESNVYNFGVLLFEMVTGRLPYL 497
           + + A+    +    +                    +   + +  G+ ++ +    LP  
Sbjct: 259 VRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPN- 317

Query: 498 VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
                        L G + + +     +        + +  L++  +R   E R      
Sbjct: 318 --------TDDAALGGSEWIFRS-CKNIP-------QPVRALLEGFLRYPKEDRLLPLQA 361

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 55/283 (19%), Positives = 104/283 (36%), Gaps = 54/283 (19%)

Query: 301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HK 359
              +V+G    GT+    + +  ++AV        K           +++  L + + H 
Sbjct: 27  CPKDVLGHGAEGTIVYRGMFDNRDVAV--------KRILPECFSFADREVQLLRESDEHP 78

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR--LR-IAMGMAYCL 416
           N +    FC E++   + +  E     TL E++  K+  HL       L+    G+A+  
Sbjct: 79  NVIRY--FCTEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHL- 134

Query: 417 EHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLS 468
              H LN  I H      N L S   +      A +SD  L     +     +  S    
Sbjct: 135 ---HSLN--IVHRDLKPHNILISMP-NAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPG 188

Query: 469 S----AP---------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV 514
           +    AP         + +   ++++ G + + +++ G  P+    G      A+ L G 
Sbjct: 189 TEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPF----GKSLQRQANILLGA 244

Query: 515 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             L   + P        +     ELI+  +  DP+KRP+ + +
Sbjct: 245 CSLD-CLHPEKHEDVIAR-----ELIEKMIAMDPQKRPSAKHV 281

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 51/297 (17%), Positives = 98/297 (32%), Gaps = 61/297 (20%)

Query: 301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHK 359
               ++G    GTV       G  +AV        K    +       +I  L++  +H 
Sbjct: 18  VSEKILGYGSSGTVVFQGSFQGRPVAV--------KRMLIDFCDIALMEIKLLTESDDHP 69

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR-----LRIAMGMAY 414
           N +    +C E       +  E   N  L + +  K     +  ++     + +   +A 
Sbjct: 70  NVIRY--YCSETTDRFLYIALELC-NLNLQDLVESKNVSDENLKLQKEYNPISLLRQIAS 126

Query: 415 CLEHMHQLNPPIAH------NYL-------NSSAVHLTEDYAAKLSD-----------LS 450
            + H+H L   I H      N L        +      E+    +SD            S
Sbjct: 127 GVAHLHSLK--IIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSS 184

Query: 451 FWNEIA--------MA-EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDN 500
           F   +          A E+   S  L +    +   ++++ G + + +++ G+ P+    
Sbjct: 185 FRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPF---- 240

Query: 501 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
           G      ++ + G+  L +       S   E  +    LI   +  DP KRPT   +
Sbjct: 241 GDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATD----LISQMIDHDPLKRPTAMKV 293

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 62.6 bits (153), Expect = 5e-11
 Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 59/248 (23%)

Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEE-PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 404
           F +++   S+++H+N V++I   EE++  +   +V EY    TL E+I       L    
Sbjct: 58  FEREVHNSSQLSHQNIVSMIDVDEEDDCYY---LVMEYIEGPTLSEYIE--SHGPLSVDT 112

Query: 405 RLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 458
            +     +   ++H H +   I H      N L      +  +   K+ D  F   IA A
Sbjct: 113 AINFTNQILDGIKHAHDMR--IVHRDIKPQNIL------IDSNKTLKIFD--F--GIAKA 160

Query: 459 ----EMAATSKKLSSA----P------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE 504
                +  T+  L +     P      +    +++Y+ G++L+EM+ G  P+  +     
Sbjct: 161 LSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGE----- 215

Query: 505 DWAADYLSGV----QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT-----MR 555
                  + V    + +Q  V    +   ++  ++L  +I      D   R         
Sbjct: 216 -------TAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKD 268

Query: 556 DIAAILRE 563
           D++++L E
Sbjct: 269 DLSSVLHE 276

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 62.5 bits (152), Expect = 7e-11
 Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 49/285 (17%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
             G  P    ++    +   ++A+  V           L+ +   +   LS+++      
Sbjct: 38  FHGGVPPLQFWQALDTALDRQVALTFVDPQGVLP-DDVLQ-ETLSRTLRLSRIDKPGVAR 95

Query: 364 LIGFCEEEE-PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 422
           ++             +V E+   G+L E               +R    +A   +  H+ 
Sbjct: 96  VLDVVHTRAGGL---VVAEWIRGGSLQEVAD----TSPSPVGAIRAMQSLAAAADAAHRA 148

Query: 423 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNF 482
              +A +  + S V ++ D    L+  +                    P A+ + ++   
Sbjct: 149 G--VALSIDHPSRVRVSIDGDVVLAYPAT------------------MPDANPQDDIRGI 188

Query: 483 GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD---PTLSSFDEEQLETLGEL 539
           G  L+ ++  R P            A   SG+ P ++         +  D +    +  +
Sbjct: 189 GASLYALLVNRWPLP---------EAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAV 239

Query: 540 IKSCVRADPEKRPT------MRDIAAILREITGITPDGAIPKLSP 578
               V+ D   R        M+   A+      + P    P  + 
Sbjct: 240 AARSVQGDGGIRSASTLLNLMQQATAVADRTEVLGPIDEAPVSAA 284

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 52/229 (22%)

Query: 350 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWG 403
           +  +  +NH N V L    E E+     ++ EYA  G +F+++     +KE E       
Sbjct: 65  VRIMKILNHPNIVKLFEVIETEKTL--YLIMEYASGGEVFDYLVAHGRMKEKEARSKFR- 121

Query: 404 MRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAM 457
              +I   + YC    HQ    I H      N L      L  D   K++D  F NE  +
Sbjct: 122 ---QIVSAVQYC----HQKR--IVHRDLKAENLL------LDADMNIKIADFGFSNEFTV 166

Query: 458 AEMAATS---------KKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA 508
                           +          E +V++ GV+L+ +V+G LP+  D  +L++   
Sbjct: 167 GGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRE 224

Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             L G   +  ++     +           L+K  +  +P KR T+  I
Sbjct: 225 RVLRGKYRIPFYMSTDCEN-----------LLKRFLVLNPIKRGTLEQI 262

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 3/147 (2%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
                IG    G V            A+  ++    +        + + ++  + K++H 
Sbjct: 29  HLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHP 88

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 419
           N   L    E+E+     +V E    G L + +++   +         +   +  C E  
Sbjct: 89  NIARLYEVYEDEQYIC--LVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECN 146

Query: 420 HQLNPPIAHNYLNSSAVHLTEDYAAKL 446
            +      H +  S      E   + +
Sbjct: 147 EEAINGSIHGFRESLDFVQREKLISNI 173

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 52/261 (19%), Positives = 87/261 (33%), Gaps = 58/261 (22%)

Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM--MVFEYAPNGTLFEHIHIKESEHLDWG 403
           FR++    + +NH   V +    E E P   +  +V EY    TL + +H      +   
Sbjct: 59  FRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH--TEGPMTPK 116

Query: 404 MRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAM 457
             + +       L   HQ    I H      N +      ++   A K+ D  F   IA 
Sbjct: 117 RAIEVIADACQALNFSHQNG--IIHRDVKPANIM------ISATNAVKVMD--F--GIAR 164

Query: 458 A------EMAATSKKLSSA----P------SASLESNVYNFGVLLFEMVTGRLPYLVDNG 501
           A       +  T+  + +A    P      S    S+VY+ G +L+E++TG  P+  D  
Sbjct: 165 AIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD-- 222

Query: 502 SLEDWAADYLSGVQ-PLQQFVD--PTLSSFDEEQLETLGELIKSCVRADPEKRPT----- 553
                     S V    Q   +     S+  E     L  ++   +  +PE R       
Sbjct: 223 ----------SPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEM 272

Query: 554 MRDIAAILREITGITPDGAIP 574
             D+  +        P     
Sbjct: 273 RADLVRVHNGEPPEAPKVLTD 293

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 59/277 (21%), Positives = 106/277 (38%), Gaps = 46/277 (16%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
               V+G    G V        G E AV  +S    K   K  +    +++  L +++H 
Sbjct: 29  KGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQ--KTDKESLLREVQLLKQLDHP 86

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 419
           N + L  F E++  F   +V E    G LF+   I   +        RI   +   + +M
Sbjct: 87  NIMKLYEFFEDKGYFY--LVGEVYTGGELFD--EIISRKRFSEVDAARIIRQVLSGITYM 142

Query: 420 HQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKLSS 469
           H+    I H      N L  S    ++D   ++ D  LS  F     M +   T+     
Sbjct: 143 HKNK--IVHRDLKPENLLLESK---SKDANIRIIDFGLSTHFEASKKMKDKIGTA--YYI 195

Query: 470 AP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT 524
           AP     +   + +V++ GV+L+ +++G  P+           A+       + + V+  
Sbjct: 196 APEVLHGTYDEKCDVWSTGVILYILLSGCPPF---------NGANE----YDILKKVEKG 242

Query: 525 LSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 557
             +F+  Q + + E    LI+  +   P  R + RD 
Sbjct: 243 KYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDA 279

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 57/278 (20%), Positives = 102/278 (36%), Gaps = 49/278 (17%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 358
                +GS   G V         VE A+  +     K            +++  L  ++H
Sbjct: 40  QRVKKLGSGAYGEVLLCRDKVTHVERAIKIIR----KTSVSTSSNSKLLEEVAVLKLLDH 95

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH 418
            N + L  F E++  +   +V E    G LF+   I      +      I   +   + +
Sbjct: 96  PNIMKLYDFFEDKRNYY--LVMECYKGGELFD--EIIHRMKFNEVDAAVIIKQVLSGVTY 151

Query: 419 MHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKLS 468
           +H+ N  I H      N L  S     +D   K+ D  LS  F N+  M E   T+    
Sbjct: 152 LHKHN--IVHRDLKPENLLLESK---EKDALIKIVDFGLSAVFENQKKMKERLGTA--YY 204

Query: 469 SAP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP 523
            AP         + +V++ GV+LF ++ G  P+                  Q + + V+ 
Sbjct: 205 IAPEVLRKKYDEKCDVWSIGVILFILLAGYPPF-------------GGQTDQEILRKVEK 251

Query: 524 TLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 557
              +FD  + + + E    LIK  ++ D ++R + +  
Sbjct: 252 GKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQA 289

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.7 bits (147), Expect = 9e-10
 Identities = 10/98 (10%), Positives = 26/98 (26%), Gaps = 1/98 (1%)

Query: 5   CRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 64
              L+ +    +           +                +  L++L  ++  +      
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 65  LPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES 102
           LP+ L     L  L +  N  +   +        L++ 
Sbjct: 507 LPDFLYDLPELQSLNIACNRGIS-AAQLKADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 17/112 (15%)

Query: 5   CRNLKDLCLE-----GTLAPEIQSLTHIKSIILRNNSFSGI---------IPEGFGELEE 50
            ++L D+ L        L   +  L  ++S+ +  N              + +      +
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 51  LEVLDFGHNNFSG-PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
           +++   G+NN    P    L     L +L   +N     L         L++
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HL-EAFGTNVKLTD 599

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 6e-09
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 8/94 (8%)

Query: 15  GTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSGPLPNDLGINH 73
                  ++   + +I LR N  + +  +     L  L  +D  +N FS   P     + 
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS 776

Query: 74  SLTIL------LLDNNDFVGSLSPEIYKLQVLSE 101
            L           + N  +      I     L +
Sbjct: 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 9e-09
 Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 7/94 (7%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
              L  L              +   +  + L  N    I  +     +++E L F HN  
Sbjct: 572 MVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631

Query: 62  SGPLPNDLGIN--HSLTILLLDNNDFVGSLSPEI 93
              +PN       + +  +    N   GS    I
Sbjct: 632 KY-IPNIFNAKSVYVMGSVDFSYNKI-GSEGRNI 663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 2/105 (1%)

Query: 9   KDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN 67
           K+L + G     ++ +   +  + L      G +P+  G+L EL+VL FG ++ +     
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 68  DLGINHSLTILLLDNNDFVGSLSPE-IYKLQVLSESQVDEGQLSS 111
                 +  +     +          +   Q L+ S + +  ++ 
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 13/105 (12%)

Query: 7   NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS---- 62
            +       + + +     +  ++ L  N       E F     +  +   +N  +    
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 63  ---GPLPNDLGINHSLTILLLDNNDFVGSLSPEI-----YKLQVL 99
               P   +    + LT + L  N    SLS +        L  +
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM 758

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 8/94 (8%), Positives = 24/94 (25%), Gaps = 12/94 (12%)

Query: 20  EIQSLTHIKSIILRNNSFSGIIPEGFGELEE-----LEVLDFGHNNFSGPLPNDLGINHS 74
             +S+  + S+    N            +++        +   +N               
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 75  LTILLLDNNDF-------VGSLSPEIYKLQVLSE 101
           ++ ++L NN         +           +L+ 
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 21/110 (19%)

Query: 5   CRNLKDLCLEG----TLAPEIQSLTHIKSIILR------NNSFSGIIPEGFGELEELEVL 54
              L ++ +      +   +  + + +K+  +R       N      P G      L  L
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

Query: 55  DFGHNNFSGPLPNDLGINHSLTILLLDNN--------DFVGSLSPEIYKL 96
             G N+    +   L     L IL + +N             +   +Y L
Sbjct: 812 QIGSNDIRK-VDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 3/105 (2%)

Query: 7   NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP 66
           +L     +G +   I  LT +K +    +S +        E    ++ +   +       
Sbjct: 329 SLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

Query: 67  ND-LGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 110
              L  +  L +  L  +    + +PE+  ++  S   + + Q+ 
Sbjct: 389 KMFLDYDQRLNLSDLLQDAI--NRNPEMKPIKKDSRISLKDTQIG 431

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 25/119 (21%)

Query: 6   RNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI------IPEGFGELEELEVLDFGHN 59
                L       PE++ +     I L++     +      I +    L +L+++ F ++
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS 458

Query: 60  NFSGP-------------------LPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 99
            F+                               LT + L N   +  L   +Y L  L
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 6   RNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN-NFSGP 64
           R+ +   +       I +   +  + + +N    +  +      +L +LD   N N S  
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNPNISID 843

Query: 65  LPNDLGINHSLTILLLDNN 83
           + +      +   +LL + 
Sbjct: 844 VTSVCPYIEAGMYVLLYDK 862

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 60.1 bits (146), Expect = 9e-10
 Identities = 57/292 (19%), Positives = 102/292 (34%), Gaps = 67/292 (22%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVS---VASAKDWPKNLEVQFRKKIDTLSKV 356
             S  +GS   G V          ++A+  +S    A       +  +    +I+ L K+
Sbjct: 138 IMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKL 197

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAM 410
           NH   + +  F + E+ +   +V E    G LF+ +     +KE+           ++ +
Sbjct: 198 NHPCIIKIKNFFDAEDYY---IVLELMEGGELFDKVVGNKRLKEATCKLY---FY-QMLL 250

Query: 411 GMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAA 462
            + Y     H+    I H      N L SS     ED   K++D   S      + E + 
Sbjct: 251 AVQYL----HENG--IIHRDLKPENVLLSSQ---EEDCLIKITDFGHS----KILGETSL 297

Query: 463 TSKKLSS----APS--ASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAAD 509
                 +    AP    S+ +  YN        GV+LF  ++G  P+      +      
Sbjct: 298 MRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS----- 352

Query: 510 YLSGVQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 557
                  L+  +     +F  E    + E    L+K  +  DP+ R T  + 
Sbjct: 353 -------LKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEA 397

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 39/238 (16%), Positives = 86/238 (36%), Gaps = 54/238 (22%)

Query: 341 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLFEHIHIKESEH 399
            +E Q R++I+  S + H N + +  +  +     R+ ++ E+AP G L++   +++   
Sbjct: 56  GVEHQLRREIEIQSHLRHPNILRMYNYFHDR---KRIYLMLEFAPRGELYK--ELQKHGR 110

Query: 400 LDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWN 453
            D          +A  L + H+    + H      N L      +      K++D  +  
Sbjct: 111 FDEQRSATFMEELADALHYCHERK--VIHRDIKPENLL------MGYKGELKIADFGW-- 160

Query: 454 EIAMAEMAATSKKLSS-------APSASLESNVYN-------FGVLLFEMVTGRLPYLVD 499
               +  A + ++ +         P   +E   ++        GVL +E + G  P+  D
Sbjct: 161 ----SVHAPSLRRRTMCGTLDYLPPEM-IEGKTHDEKVDLWCAGVLCYEFLVGMPPF--D 213

Query: 500 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
           + S  +     ++       F+                 LI   +R  P +R  ++ +
Sbjct: 214 SPSHTETHRRIVNVDLKFPPFLSDGSKD-----------LISKLLRYHPPQRLPLKGV 260

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 46/281 (16%), Positives = 94/281 (33%), Gaps = 81/281 (28%)

Query: 312 GTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE 370
              ++ +        A   V  +       +   +   +I     + H++ V   GF E+
Sbjct: 29  AKCFEISDADTKEVFAGKIVPKSLLLK--PHQREKMSMEISIHRSLAHQHVVGFHGFFED 86

Query: 371 EEPFTRM-MVFEYAPNGTLFEHI----HIKESEHLDWGMRLR-----IAMGMAYCLEHMH 420
                 + +V E     +L E       + E E        R     I +G  Y   H +
Sbjct: 87  N---DFVFVVLELCRRRSLLELHKRRKALTEPE-------ARYYLRQIVLGCQYL--HRN 134

Query: 421 QLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS----- 469
           +    + H      N        L ED   K+ D     ++         +K        
Sbjct: 135 R----VIHRDLKLGNLF------LNEDLEVKIGDFGLATKV----EYDGERKKVLCGTPN 180

Query: 470 --AP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLED-----WAADYLSGVQP 516
             AP        S E +V++ G +++ ++ G+ P+  +   L++        +Y      
Sbjct: 181 YIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPF--ETSCLKETYLRIKKNEY-----S 233

Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
           + + ++P  +S           LI+  ++ DP  RPT+ ++
Sbjct: 234 IPKHINPVAAS-----------LIQKMLQTDPTARPTINEL 263

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 36/263 (13%), Positives = 79/263 (30%), Gaps = 101/263 (38%)

Query: 341 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLFEHIHIKE--- 396
            +  + + ++    ++ H + + L  + E+      + +V E   NG +  ++  +    
Sbjct: 53  GMVQRVQNEVKIHCQLKHPSILELYNYFEDS---NYVYLVLEMCHNGEMNRYLKNRVKPF 109

Query: 397 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD-- 448
           SE+       +I  GM Y     H     I H      N L      LT +   K++D  
Sbjct: 110 SENEARHFMHQIITGMLYL----HSHG--ILHRDLTLSNLL------LTRNMNIKIADFG 157

Query: 449 LSFWNEIAMAEMAATSKKLSS--------APSASLESNVYNF-------GVLLFEMVTGR 493
           L+        ++    +K  +        +P      + +         G + + ++ GR
Sbjct: 158 LA-------TQLKMPHEKHYTLCGTPNYISPEI-ATRSAHGLESDVWSLGCMFYTLLIGR 209

Query: 494 LPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETL------GE--------- 538
            P                                FD + ++         +         
Sbjct: 210 PP--------------------------------FDTDTVKNTLNKVVLADYEMPSFLSI 237

Query: 539 ----LIKSCVRADPEKRPTMRDI 557
               LI   +R +P  R ++  +
Sbjct: 238 EAKDLIHQLLRRNPADRLSLSSV 260

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 9/105 (8%)

Query: 5   CRNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHN 59
             +L+ L L       ++     L  ++ +  ++++   +     F  LE+L  LD  + 
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 60  NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 100
           N             SL  L +  N F  +    +      L  L 
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 5   CRNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
             NL  L L       ++  +  +L  ++ + + +N+   +    + +L  L  LD   N
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531

Query: 60  NFSGPLPNDLGINHSLTILLLDNNDF 85
                         SL    L NN  
Sbjct: 532 RIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 4/84 (4%)

Query: 21  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 80
              L H+ ++IL  N      P  F  L  LE L       +      +G   +L  L +
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135

Query: 81  DNNDFVGSLSPEI----YKLQVLS 100
            +N       P        L  + 
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVD 159

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 21  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILL 79
             SL  +  + +   +        F  L  L  L    N+F     ++      +LT L 
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 80  LDNNDFVGSLSPEI----YKLQVLS 100
           L        +S  +    ++LQ+L+
Sbjct: 480 LSKCQLE-QISWGVFDTLHRLQLLN 503

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.3 bits (131), Expect = 8e-08
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 5   CRNLKDLCL------EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 58
             +L  L +      + TL+    + T++  + L       I    F  L  L++L+  H
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 59  NNFSGPLPNDLGINHSLTILLLDNNDF 85
           NN      +     +SL+ L    N  
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 5/83 (6%)

Query: 22  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 81
            + + ++ + L       I  + +  L  L  L    N      P       SL  L+  
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 82  NNDFVGSLSPEI----YKLQVLS 100
                 SL          L+ L+
Sbjct: 113 ETKLA-SLESFPIGQLITLKKLN 134

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 12/117 (10%)

Query: 6   RNLKDLCLEG------TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEEL----EVLD 55
             LK L +         L     +LT++  + L  N    I       L E       LD
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 56  FGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE-IYKLQVLSESQVDEGQLSS 111
              N     + +       L  L L  N    ++    +  L  L   ++  G+   
Sbjct: 188 MSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 25  THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND 84
           +  K+I L  N    +    F    EL+ LD                 H L+ L+L  N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 85  FVGSLSPEIY----KLQVLS 100
              S SP  +     L+ L 
Sbjct: 92  IQ-SFSPGSFSGLTSLENLV 110

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 14/109 (12%)

Query: 5   CRNLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGH 58
             +L++L        +L    I  L  +K + + +N      +P  F  L  L  +D  +
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 59  NNFSGPLPNDL----GINHSLTILLLDNNDFVGSLSPEI---YKLQVLS 100
           N       NDL            L +  N     +  +     KL  L+
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELT 210

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 23  SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN-HSLTILLLD 81
               ++ + L  N    I+   F  LEEL+ LDF H+           ++   L  L + 
Sbjct: 374 GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 82  NNDFVGSLSPEI----YKLQVLS 100
             +        I      L  L 
Sbjct: 433 YTNT-KIDFDGIFLGLTSLNTLK 454

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 23/101 (22%), Positives = 32/101 (31%), Gaps = 7/101 (6%)

Query: 5   CRNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
               + L +      +     L  +KS+ L  N  S  I      L  L  LD   N  S
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALS 363

Query: 63  --GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
             G         +SL  L L  N  +  +S     L+ L  
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQH 403

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 7   NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP 66
            ++ +     L    ++     S+ +  N    I  + F  ++ L  L    N  S  + 
Sbjct: 164 YIQTIT-VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIM 221

Query: 67  NDLGIN-HSLTILLLDNNDFVGSLSPEIYKLQVLS 100
                N   L +  L   +F    + EI++  ++ 
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 5   CRNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
             NL+ L LE T    L   I +L ++KS+ +RN+  S  +      L +LE LD     
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCT 240

Query: 61  FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
                P   G    L  L+L +   + +L  +I++L  L +
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 4/109 (3%)

Query: 6   RNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
           +NLK L +       L P I  L  ++ + LR  +     P  FG    L+ L     + 
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265

Query: 62  SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 110
              LP D+     L  L L     +  L   I +L       V     +
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 15/120 (12%)

Query: 5   CRNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
             +L+ + ++      L   +Q    ++++ L  N     +P     L  L  L      
Sbjct: 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP 161

Query: 61  FSGPLPNDLGIN---------HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 111
               LP  L             +L  L L+      SL   I  LQ L   ++    LS+
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 5   CRNLKDLCLEG-----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
              L++L L G        P       +K +IL++ S    +P     L +LE LD    
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 60  NFSGPLPNDLGINHSLTILLLDNN 83
                LP+ +    +  I+L+  +
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 11/99 (11%)

Query: 5   CRNLKDLCLEGTLAPEIQSLTHIKSIIL--RNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
            R LK        A  ++  T    + L  R+       P+    L  L+ +        
Sbjct: 65  GRALK------ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

Query: 63  GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
             LP+ +     L  L L  N    +L   I  L  L E
Sbjct: 118 E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 5   CRNLKDLCLEG-----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
              LK L L+      TL  +I  LT ++ + LR       +P    +L    ++     
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PP 310

Query: 60  NFSGPLPNDL 69
           +    L    
Sbjct: 311 HLQAQLDQHR 320

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 52/353 (14%), Positives = 105/353 (29%), Gaps = 113/353 (32%)

Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIA-VASVSVASAKDWPKNLEVQ-FRKKIDTLSKV-NH 358
               +G    G V +       + A   +V+V   K+   + E +    ++  L  + +H
Sbjct: 26  LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHH 85

Query: 359 KNFVNLIGFC-EEEEPFTRMMVFEYAPNGTLFEHIH---------------------IKE 396
            N VNL+G C +   P   M++ E+   G L  ++                         
Sbjct: 86  LNVVNLLGACTKPGGPL--MVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVG 143

Query: 397 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 456
           +  +D   RL                   ++      +   L +D+      + +  ++A
Sbjct: 144 AIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVA 203

Query: 457 --MAEMAAT---------------------------SKKLSS-----------------A 470
             M  +A+                            ++ +                   A
Sbjct: 204 KGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA 263

Query: 471 PSASLESNVYN-------FGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
           P  ++   VY        FGVLL+E+ + G  PY                GV+  ++F  
Sbjct: 264 PE-TIFDRVYTIQSDVWSFGVLLWEIFSLGASPY---------------PGVKIDEEFCR 307

Query: 523 ----------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT 565
                     P  ++        + + +  C   +P +RPT  ++   L  + 
Sbjct: 308 RLKEGTRMRAPDYTT------PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 354

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 35/247 (14%), Positives = 76/247 (30%), Gaps = 37/247 (14%)

Query: 287 VPKLK-RSELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVA---SAKDWPK 340
           +P +K ++E +   +     +++G      VY+ T  +  +                 P 
Sbjct: 51  LPAIKPKTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQK-FVLKVQKPANPW 109

Query: 341 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK---ES 397
              +   + ++ L       F+        +     ++V E    GTL   I++      
Sbjct: 110 EFYIG-TQLMERLKPSMQHMFMKFYSAHLFQNGS--VLVGELYSYGTLLNAINLYKNTPE 166

Query: 398 EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH-----------NYLNSSAVHLTEDYAAKL 446
           + +  G+ +  AM M Y +E +H     I H           N                L
Sbjct: 167 KVMPQGLVISFAMRMLYMIEQVHDCE--IIHGDIKPDNFILGNGFLEQDDEDDLSAGLAL 224

Query: 447 SD--LSFWNEIAMAEMAATSKKLSSAPSA---------SLESNVYNFGVLLFEMVTGRLP 495
            D   S   ++       T+K  +S             + + + +     ++ M+ G   
Sbjct: 225 IDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYM 284

Query: 496 YLVDNGS 502
            + + G 
Sbjct: 285 KVKNEGG 291

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 46/284 (16%), Positives = 96/284 (33%), Gaps = 87/284 (30%)

Query: 312 GTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE 370
              ++ +        A   V  +       +   +   +I     + H++ V   GF E+
Sbjct: 55  AKCFEISDADTKEVFAGKIVPKSLLLK--PHQREKMSMEISIHRSLAHQHVVGFHGFFED 112

Query: 371 EEPFTRM-MVFEYAPNGTLFEHI----HIKESEHLDWGMRLR-----IAMGMAYCLEHMH 420
                 + +V E     +L E       + E E        R     I +G  Y   H +
Sbjct: 113 N---DFVFVVLELCRRRSLLELHKRRKALTEPE-------ARYYLRQIVLGCQYL--HRN 160

Query: 421 QLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLSS--- 469
           +    + H      N        L ED   K+ D  L+        ++    ++      
Sbjct: 161 R----VIHRDLKLGNLF------LNEDLEVKIGDFGLA-------TKVEYDGERKKVLCG 203

Query: 470 -----AP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLED-----WAADYLSG 513
                AP        S E +V++ G +++ ++ G+ P+  +   L++        +Y   
Sbjct: 204 TPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPF--ETSCLKETYLRIKKNEY--- 258

Query: 514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
              + + ++P  +S           LI+  ++ DP  RPT+ ++
Sbjct: 259 --SIPKHINPVAAS-----------LIQKMLQTDPTARPTINEL 289

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 52/285 (18%), Positives = 99/285 (34%), Gaps = 52/285 (18%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVS--------VASAKDWPKNLEVQFRKKID 351
                +GS   G V      +   E A+  +          +      +    +   +I 
Sbjct: 39  FKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEIS 98

Query: 352 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMG 411
            L  ++H N + L    E+++ F   +V E+   G LFE   I      D      I   
Sbjct: 99  LLKSLDHPNIIKLFDVFEDKKYFY--LVTEFYEGGELFE--QIINRHKFDECDAANIMKQ 154

Query: 412 MAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMA 461
           +   + ++H+ N  I H      N L  +          K+ D  LS  F  +  + +  
Sbjct: 155 ILSGICYLHKHN--IVHRDIKPENILLENK---NSLLNIKIVDFGLSSFFSKDYKLRDRL 209

Query: 462 ATSKKLSSAP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
            T+     AP       + + +V++ GV+++ ++ G  P+            +     Q 
Sbjct: 210 GTA--YYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPF---------GGQND----QD 254

Query: 517 LQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 557
           + + V+     FD    + + +    LIK  +  D  KR T  + 
Sbjct: 255 IIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEA 299

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 61/277 (22%), Positives = 108/277 (38%), Gaps = 47/277 (16%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
           +   ++G    G V K        E AV  ++ ASAK   K+      ++++ L K++H 
Sbjct: 25  NIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK--NKDTS-TILREVELLKKLDHP 81

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 419
           N + L    E+   F   +V E    G LF+   I + +        RI   +   + +M
Sbjct: 82  NIMKLFEILEDSSSFY--IVGELYTGGELFD--EIIKRKRFSEHDAARIIKQVFSGITYM 137

Query: 420 HQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKLSS 469
           H+ N  I H      N L  S     +D   K+ D  LS  F     M +   T+     
Sbjct: 138 HKHN--IVHRDLKPENILLESK---EKDCDIKIIDFGLSTCFQQNTKMKDRIGTA--YYI 190

Query: 470 AP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT 524
           AP     +   + +V++ GV+L+ +++G  P+         +  +       + + V+  
Sbjct: 191 APEVLRGTYDEKCDVWSAGVILYILLSGTPPF---------YGKNE----YDILKRVETG 237

Query: 525 LSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 557
             +FD  Q  T+ +    LI+  +   P  R T    
Sbjct: 238 KYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQC 274

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 5/102 (4%)

Query: 5   CRNLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
             NL  L L       +  +  QS   + +++L  N    +        + L+ L F   
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 60  NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
             S      L    +L  L L +N       P+ +  + L  
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 13/108 (12%)

Query: 5   CRNLKDLCLE-------GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG 57
             NL++L L             ++++L+H++S+ L  N    +  E F E  +LE+LD  
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 58  HNNFSG-PLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 100
                     +     H L +L L ++      S ++      LQ L+
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLL-DISSEQLFDGLPALQHLN 455

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 5   CRNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
              L++L L       L   +  L+ +K ++L  N F  +          L  L    N 
Sbjct: 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 61  FSGPL-PNDLGINHSLTILLLDNND--FVGSLSPEIYKLQVL 99
               L    L    +L  L L ++D       + ++  L  L
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 5   CRNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
              L+ L L      ++      SL  +  + L +N  +    E    L+ +  L+   N
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533

Query: 60  NFSGPLPNDLGINHSLTILLLDNNDF 85
           + S  LP+ L I      + L  N  
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 11/71 (15%), Positives = 17/71 (23%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 72
           L          L ++  + L       I  + F     L+ L    N         L   
Sbjct: 45  LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104

Query: 73  HSLTILLLDNN 83
            +L  L     
Sbjct: 105 KALKHLFFIQT 115

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 8e-08
 Identities = 22/112 (19%), Positives = 32/112 (28%), Gaps = 8/112 (7%)

Query: 5   CRNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
              L  L L       +A         +K +       S I        + LE L  G N
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139

Query: 60  NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 111
           + S            L +L   NN     LS E   +  L ++      L+ 
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKED--MSSLQQATNLSLNLNG 188

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 14/109 (12%)

Query: 5   CRNLKDLCLEG----TLAPE--IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 58
           C  L+ L L          +   Q+L  +K + L ++       + F  L  L+ L+   
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 59  NNFSG---PLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 100
           N+F        N L     L IL+L   D   S+          +  + 
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVD 506

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 14/81 (17%), Positives = 22/81 (27%), Gaps = 5/81 (6%)

Query: 24  LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 83
               + +    N    I    F  L  L  LD           +     H L  L+L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 84  DFVGSLSPEI----YKLQVLS 100
             +  ++         L+ L 
Sbjct: 92  PLI-FMAETALSGPKALKHLF 111

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 21  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 80
           +Q+L  ++ ++L     S I    F  L+ +  +D  HN  +      L     + + L 
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLA 531

Query: 81  DNN 83
            N+
Sbjct: 532 SNH 534

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 17  LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLT 76
              E      ++SI L+ + F  I    F     L+ LD    + S  LP+ L    +L 
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLK 304

Query: 77  ILLLDNN 83
            L+L  N
Sbjct: 305 KLVLSAN 311

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 8/86 (9%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGII---PEGFGELEELEVLDFG 57
             LK L L        + ++   L  ++ + L+ N F             L  LE+L   
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 58  HNNFSGPLPNDLGINHSLTILLLDNN 83
             + S    +       +  + L +N
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHN 510

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 21  IQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNN--FSGPLPNDLGINHSLTI 77
             +   +  + ++ N+    +  G    LE L  LD  H++   S      L     L  
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 78  LLLDNNDFVGSLSPEIYKLQVLSE 101
           L L  N+ +   +    +   L  
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLEL 404

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 3/81 (3%)

Query: 23  SLTHIKSIILRNNSFSGIIPEGFGELEE--LEVLDFGHNNFSGPLPNDLGINHSLTILLL 80
           ++  +      +     I P  F  L E  +E ++   + F     N       L  L L
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 81  DNNDFVGSLSPEIYKLQVLSE 101
                   L   +  L  L +
Sbjct: 286 TATHL-SELPSGLVGLSTLKK 305

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 9/94 (9%)

Query: 15  GTLAPEIQSLTHIKSIILRNNSFSGIIPEG--FGELEELEVLDFGHNNFSGPLPNDLGI- 71
             + P        +S+         +I +G     ++ L +  F   +     P      
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 72  -NHSLTILLLDNNDFVGSLSPEI----YKLQVLS 100
              S+  + L  + F  ++S         LQ L 
Sbjct: 252 CEMSVESINLQKHYFF-NISSNTFHCFSGLQELD 284

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 32/127 (25%)

Query: 6   RNLKDLCL-----EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEEL--------- 51
           + L+ L L          P+      +K +  +NN+   +  E    L++          
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 52  ----------------EVLDFGHNNFSGPLPNDLGINH--SLTILLLDNNDFVGSLSPEI 93
                           + L+FG       +   L  +   SL +   ++ D         
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 94  YKLQVLS 100
             L  +S
Sbjct: 249 EGLCEMS 255

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 5e-09
 Identities = 64/503 (12%), Positives = 147/503 (29%), Gaps = 158/503 (31%)

Query: 19  PEIQSLTHIKSIILRNNSFSGIIPEG---FGE--LEELEVL-DFG-HNNFSGPL------ 65
             +Q    ++  +L       ++ +G    G+  +  L+V   +         +      
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-LDVCLSYKVQCKMDFKIFWLNLK 190

Query: 66  ----PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYE 121
               P  +       +  +D N    S      KL++ S     + +L    K +   YE
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI----QAELRRLLKSKP--YE 244

Query: 122 RSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKA 181
             +    VL    VQ      N F NL  +IL                   +        
Sbjct: 245 NCLL---VLLN--VQNAKA-WNAF-NLSCKIL-------------------L-------- 270

Query: 182 NETSSDRN--DSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIA 239
             T+  +   D +S    ++                        S  H     +  +  +
Sbjct: 271 --TTRFKQVTDFLSAATTTHI-----------------------SLDHHSMTLTPDEVKS 305

Query: 240 ILGGVIGGAI------------LLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGV 287
           +L   +                  ++ +     R + ++T   W      +L     + +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAE-SIR-DGLATWDNWKHVNCDKLTTIIESSL 363

Query: 288 PKLKRSELEAACEDFS----NV-IGSSPIGTVYKGTLSNGVEIAVASVSVAS-AKDWPKN 341
             L+ +E     +  S    +  I +  +  ++   + + V + V  +   S  +  PK 
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 342 -------LEVQFRKKIDTLSKVNHKNFVN----LIGFCEEEEPFTRMMVFEYAPNGTLFE 390
                  + ++ + K++    + H++ V+       F  ++       + +Y      + 
Sbjct: 424 STISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDSDD--LIPPYLDQY-----FYS 475

Query: 391 HI--HIKESEH-------------LDW-GMRLRIAMGMAYC-----LEHMHQLNPPIAHN 429
           HI  H+K  EH               +   ++R     A+      L  + QL       
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR-HDSTAWNASGSILNTLQQLK-----F 529

Query: 430 YLNSSAVHLTED---YAAKLSDL 449
           Y      ++ ++   Y   ++ +
Sbjct: 530 YKP----YICDNDPKYERLVNAI 548

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 9e-08
 Identities = 75/563 (13%), Positives = 150/563 (26%), Gaps = 202/563 (35%)

Query: 58  HNNFSGPLPNDLG-INHSLTILLLDN-NDFVGSLS----PEIYKLQVLSESQVDEGQLSS 111
           H +F      + G   +    +L    + FV +       ++ K  +LS+ ++D   + S
Sbjct: 6   HMDF------ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDH-IIMS 57

Query: 112 AAKKEQSCYERSIKWNGVLD--EDTVQR---RLLQIN-PFRNLKGRILGIAPTSSPPPSS 165
                 +     + W  +L   E+ VQ+    +L+IN  F  L   I            +
Sbjct: 58  KDAVSGT---LRLFWT-LLSKQEEMVQKFVEEVLRINYKF--LMSPI-----------KT 100

Query: 166 DAIPPASVGSSDDTKANETSSDR--NDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSS 223
           +   P     S  T+      DR  ND+    K +                   + R   
Sbjct: 101 EQRQP-----SMMTRMYIEQRDRLYNDNQVFAKYN-------------------VSRLQP 136

Query: 224 SQSHQKS--GGSSSKHIAILGGVIG-GAILLVATVGIYLCRCNKVSTVKP----WATGLS 276
               +++      +K++ ++ GV+G G   +   V    C   KV         W     
Sbjct: 137 YLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDV----CLSYKVQCKMDFKIFWLN--L 189

Query: 277 GQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK 336
                           + LE   +     I  +     +     +   I    + + S +
Sbjct: 190 KNCNSP---------ETVLEML-QKLLYQIDPN-----WTSRSDHSSNI---KLRIHSIQ 231

Query: 337 DWPKNL--EVQFRKKIDTLSKVNHKNFVNLIGF-CEEEEPFTRMM-------VFEYAPNG 386
              + L     +   +  L  V +    N     C       +++       V ++    
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-------KILLTTRFKQVTDFLSAA 284

Query: 387 TLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL 446
           T          +H                                      LT D    L
Sbjct: 285 TTTH----ISLDHHSMT----------------------------------LTPDEVKSL 306

Query: 447 SDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDW 506
             L  + +    ++       +  P                 ++            + D 
Sbjct: 307 --LLKYLDCRPQDLPREVLTTN--P-------------RRLSII-AES--------IRDG 340

Query: 507 AADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRA-DP-EKRPTMRDIAAILREI 564
            A               T  ++     + L  +I+S +   +P E R     + ++    
Sbjct: 341 LA---------------TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPP- 383

Query: 565 TGITPDGAIPK--LSPLWWAEIE 585
                   IP   LS +W+  I+
Sbjct: 384 -----SAHIPTILLSLIWFDVIK 401

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 54/277 (19%), Positives = 88/277 (31%), Gaps = 68/277 (24%)

Query: 313 TVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE 372
            + +            +         P+    Q  ++I  L K++H N V L+   E  +
Sbjct: 50  KLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLV---EVLD 106

Query: 373 PFTR---MMVFEYAPNGTLFEHI-HIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH 428
                   MVFE    G + E       SE         +  G+ Y     H     I H
Sbjct: 107 DPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYL----HYQK--IIH 160

Query: 429 ------NYLNSSAVHLTEDYAAKLSDLSFWNEIA---------------MA-EMAATSKK 466
                 N L      + ED   K++D    NE                 MA E  + ++K
Sbjct: 161 RDIKPSNLL------VGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRK 214

Query: 467 LSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL------QQF 520
           + S        +V+  GV L+  V G+ P++ +              +  L      Q  
Sbjct: 215 IFSGK----ALDVWAMGVTLYCFVFGQCPFMDER-------------IMCLHSKIKSQAL 257

Query: 521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             P      E+    L +LI   +  +PE R  + +I
Sbjct: 258 EFPDQPDIAED----LKDLITRMLDKNPESRIVVPEI 290

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 41/280 (14%), Positives = 77/280 (27%), Gaps = 70/280 (25%)

Query: 304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
             +G    G V++      G + AV  V +   +           +++   + ++    V
Sbjct: 64  PRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRV----------EELVACAGLSSPRIV 113

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMRLRIAMGMAYC----- 415
            L G   E       M  E    G+L + I       E               Y      
Sbjct: 114 PLYGAVREGPWVNIFM--ELLEGGSLGQLIKQMGCLPEDR-------AL---YYLGQALE 161

Query: 416 -LEHMHQLNPPIAH------NYLNSSAVHLTED-YAAKLSDLSFWNEIAMAEMAATSKKL 467
            LE++H     I H      N L      L+ D   A L D      +    +  +    
Sbjct: 162 GLEYLHTRR--ILHGDVKADNVL------LSSDGSRAALCDFGHALCLQPDGLGKSLLTG 213

Query: 468 SS--------AP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 513
                     AP          + ++++   ++  M+ G  P+                 
Sbjct: 214 DYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPW----TQYFRGPLCLKIA 269

Query: 514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 553
            +P      P   +          + I+  +R +P  R +
Sbjct: 270 SEPPPIREIPPSCA------PLTAQAIQEGLRKEPVHRAS 303

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 49/245 (20%), Positives = 83/245 (33%), Gaps = 57/245 (23%)

Query: 340 KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGT--LFEHI-HIKE 396
            N E   +K+I  L ++ HKN + L+     EE     MV EY   G   + + +   + 
Sbjct: 47  PNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRF 106

Query: 397 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLS 450
                 G   ++  G+ Y     H     I H      N L      LT     K+S L 
Sbjct: 107 PVCQAHGYFCQLIDGLEYL----HSQG--IVHKDIKPGNLL------LTTGGTLKISALG 154

Query: 451 FWNEIAMA------------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTG 492
               +                     E+A      S       + ++++ GV L+ + TG
Sbjct: 155 VAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGF-----KVDIWSAGVTLYNITTG 209

Query: 493 RLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP 552
             P+  +  ++     +   G   +     P LS            L+K  +  +P KR 
Sbjct: 210 LYPF--EGDNIYKLFENIGKGSYAIPGDCGPPLSD-----------LLKGMLEYEPAKRF 256

Query: 553 TMRDI 557
           ++R I
Sbjct: 257 SIRQI 261

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 55/284 (19%), Positives = 101/284 (35%), Gaps = 63/284 (22%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 358
           D    +GS     V K    S G+E A   +    ++   + +  +   +++  L +V H
Sbjct: 15  DIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLH 74

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAMGM 412
            N + L    E        ++ E    G LF+ +     + E E       ++ +I  G+
Sbjct: 75  HNVITLHDVYENRTDVV--LILELVSGGELFDFLAQKESLSEEEATSF---IK-QILDGV 128

Query: 413 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAA 462
            Y     H     IAH      N +             KL D  L+    + +    +  
Sbjct: 129 NYL----HTKK--IAHFDLKPENIMLLD--KNIPIPHIKLIDFGLAHEIEDGVEFKNIFG 180

Query: 463 TSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLED-WAADYLSG 513
           T + +  AP         LE+++++ GV+ + +++G  P+L D    +L +  +  Y   
Sbjct: 181 TPEFV--APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSY--- 235

Query: 514 VQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 553
                         FDEE      E     I+  +  +  KR T
Sbjct: 236 -------------DFDEEFFSHTSELAKDFIRKLLVKETRKRLT 266

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 56/284 (19%), Positives = 101/284 (35%), Gaps = 63/284 (22%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 358
           D    +GS     V K    S G+E A   +    ++   + +  +   +++  L +V H
Sbjct: 15  DIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLH 74

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAMGM 412
            N + L    E        ++ E    G LF+ +     + E E       ++ +I  G+
Sbjct: 75  PNIITLHDVYENRTDVV--LILELVSGGELFDFLAQKESLSEEEATSF---IK-QILDGV 128

Query: 413 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAA 462
            Y     H     IAH      N +             KL D  L+    + +    +  
Sbjct: 129 NYL----HTKK--IAHFDLKPENIMLLD--KNIPIPHIKLIDFGLAHEIEDGVEFKNIFG 180

Query: 463 TSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLED-WAADYLSG 513
           T + +  AP         LE+++++ GV+ + +++G  P+L D    +L +  A  Y   
Sbjct: 181 TPEFV--APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSY--- 235

Query: 514 VQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 553
                         FDEE      E     I+  +  +  KR T
Sbjct: 236 -------------DFDEEFFSQTSELAKDFIRKLLVKETRKRLT 266

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 57/277 (20%), Positives = 100/277 (36%), Gaps = 61/277 (22%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
           V+G    G VY G  LSN V IA+  +    ++           ++I     + HKN V 
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRY-----SQPLHEEIALHKHLKHKNIVQ 83

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTL-----FEHIHIKESEHLDWGMRLRIAMGMAYCLEH 418
            +G   E       M  E  P G+L      +   +K++E        +I  G+ Y    
Sbjct: 84  YLGSFSENGFIKIFM--EQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKY---- 137

Query: 419 MHQLNPPIAH------NYL---NSSAVHLTEDY--AAKLSDLS----------FWNEIAM 457
           +H     I H      N L    S  + ++ D+  + +L+ ++           +    M
Sbjct: 138 LHDNQ--IVHRDIKGDNVLINTYSGVLKIS-DFGTSKRLAGINPCTETFTGTLQY----M 190

Query: 458 A-EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
           A E+                +++++ G  + EM TG+ P+       E  AA +  G+  
Sbjct: 191 APEII-----DKGPRGYGKAADIWSLGCTIIEMATGKPPF---YELGEPQAAMFKVGMFK 242

Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 553
           +   +  ++S             I  C   DP+KR  
Sbjct: 243 VHPEIPESMS-------AEAKAFILKCFEPDPDKRAC 272

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 50/280 (17%), Positives = 109/280 (38%), Gaps = 62/280 (22%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
           D    +GS   G V++    + G       ++     D     +   + +I  +++++H 
Sbjct: 54  DILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLD-----KYTVKNEISIMNQLHHP 108

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL---DWGMRLRIAMGMAYCL 416
             +NL    E++      ++ E+   G LF+ I   E   +   +    +R A      L
Sbjct: 109 KLINLHDAFEDKYEMV--LILEFLSGGELFDRI-AAEDYKMSEAEVINYMRQACE---GL 162

Query: 417 EHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKK 466
           +HMH+ +  I H      N +  +     +  + K+ D  L+     +  +    AT++ 
Sbjct: 163 KHMHEHS--IVHLDIKPENIMCET----KKASSVKIIDFGLATKLNPDEIVKVTTATAEF 216

Query: 467 LSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLED-WAADYLSGVQPL 517
              AP           ++++  GVL + +++G  P+  ++   +L++    D+       
Sbjct: 217 A--APEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDW------- 267

Query: 518 QQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 553
                     FDE+   ++       IK+ ++ +P KR T
Sbjct: 268 ---------EFDEDAFSSVSPEAKDFIKNLLQKEPRKRLT 298

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 7   NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNF 61
           +LK L L      T++     L  ++ +  ++++   +     F  L  L  LD  H + 
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 62  SGPLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 100
                       SL +L +  N F  +  P+I      L  L 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            +L  L L G    +LA      L+ ++ ++    + + +     G L+ L+ L+  HN 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 61  F-SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQL 109
             S  LP       +L  L L +N    S+      L+VL +  +    L
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD--LRVLHQMPLLNLSL 182

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 22  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILLL 80
            SL ++  + + +          F  L  LEVL    N+F      D      +LT L L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 81  DNNDFVGSLSPEI----YKLQVLS 100
                   LSP        LQVL+
Sbjct: 478 SQCQL-EQLSPTAFNSLSSLQVLN 500

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 6   RNLKDLCLEG-----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
            +L+ L + G        P+I   L ++  + L       + P  F  L  L+VL+   N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504

Query: 60  NFSGPLPNDLGINHSLTILLLDNNDFVGS 88
                         SL  + L  N +  S
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 6   RNLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
             L+ L L      T+     QSL+H+ ++IL  N    +    F  L  L+ L     N
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 61  FSGPLPNDLGINHSLTILLLDNN 83
            +      +G   +L  L + +N
Sbjct: 112 LASLENFPIGHLKTLKELNVAHN 134

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 10/62 (16%), Positives = 15/62 (24%)

Query: 22  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 81
            S   ++ + L       I    +  L  L  L    N              SL  L+  
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 82  NN 83
             
Sbjct: 109 ET 110

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 5/80 (6%)

Query: 25  THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND 84
              K++ L  N    +    F    EL+VLD                   L+ L+L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 85  FVGSLSPEI----YKLQVLS 100
              SL+         LQ L 
Sbjct: 88  IQ-SLALGAFSGLSSLQKLV 106

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 6   RNLKDLCLEG---TLAPEIQSLTHIKSIILRNN--SFSGIIPEGFGELEELEVLDFGHNN 60
           ++LK L         A     L  ++ + L  N  SF G   +       L+ LD   N 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 61  FSGPLPNDLGINHSLTILLLDNN 83
               + ++      L  L   ++
Sbjct: 385 VIT-MSSNFLGLEQLEHLDFQHS 406

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 56/277 (20%), Positives = 104/277 (37%), Gaps = 56/277 (20%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
           D    +G+   G V++ T  + G   A   V      D     +   RK+I T+S + H 
Sbjct: 160 DIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESD-----KETVRKEIQTMSVLRHP 214

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 419
             VNL    E++      M++E+   G LFE +   E   +     +     +   L HM
Sbjct: 215 TLVNLHDAFEDDNEMV--MIYEFMSGGELFEKV-ADEHNKMSEDEAVEYMRQVCKGLCHM 271

Query: 420 HQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKLSS 469
           H+ N    H      N + ++          KL D  L+     + ++     T++    
Sbjct: 272 HENN--YVHLDLKPENIMFTT----KRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFA-- 323

Query: 470 AP------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLED-WAADYLSGVQPLQQF 520
           AP           +++++ GVL + +++G  P+  +N   +L +  + D+          
Sbjct: 324 APEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDW---------- 373

Query: 521 VDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 553
                 + D+     + E     I+  + ADP  R T
Sbjct: 374 ------NMDDSAFSGISEDGKDFIRKLLLADPNTRMT 404

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 55/299 (18%), Positives = 99/299 (33%), Gaps = 81/299 (27%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVS---VASAKDWPKNLEVQFRKKIDTLSKV 356
             S  +GS   G V          ++A+  +S    A       +  +    +I+ L K+
Sbjct: 13  IMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKL 72

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAM 410
           NH   + +  F + E+ +   +V E    G LF+ +     +KE+           ++ +
Sbjct: 73  NHPCIIKIKNFFDAEDYY---IVLELMEGGELFDKVVGNKRLKEATCKLY---FY-QMLL 125

Query: 411 GMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS-------FWNEI 455
            + Y     H+    I H      N L SS     ED   K++D   S           +
Sbjct: 126 AVQYL----HENG--IIHRDLKPENVLLSSQ---EEDCLIKITDFGHSKILGETSLMRTL 176

Query: 456 A-----MA-EMAATSKKLSSAPSA---SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDW 506
                 +A E+  +        +    SL       GV+LF  ++G  P+      +   
Sbjct: 177 CGTPTYLAPEVLVSVGTAGYNRAVDCWSL-------GVILFICLSGYPPFSEHRTQVSLK 229

Query: 507 ----AADYLSGVQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 557
               +  Y                +F  E    + E    L+K  +  DP+ R T  + 
Sbjct: 230 DQITSGKY----------------NFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEA 272

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 53.4 bits (129), Expect = 8e-08
 Identities = 55/291 (18%), Positives = 104/291 (35%), Gaps = 55/291 (18%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFV 362
           V+G      V     L    E AV  +              +  ++++ L +   H+N +
Sbjct: 20  VLGEGAHARVQTCINLITSQEYAVKIIEKQPGHI-----RSRVFREVEMLYQCQGHRNVL 74

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMH 420
            LI F EEE+ F   +VFE    G++  HIH +   +E     +   +A  + +     H
Sbjct: 75  ELIEFFEEEDRF--YLVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFL----H 128

Query: 421 QLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLSS--- 469
                IAH      N L        +    K+ D  L    ++       ++ +L +   
Sbjct: 129 NKG--IAHRDLKPENILCEHP---NQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCG 183

Query: 470 -----AP----SASLESNVYN-------FGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 513
                AP    + S E+++Y+        GV+L+ +++G  P++   GS   W       
Sbjct: 184 SAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACP 243

Query: 514 VQPLQQFVDPTLS---SFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 557
                 F +        F ++    +      LI   +  D ++R +   +
Sbjct: 244 ACQNMLF-ESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQV 293

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 53/290 (18%), Positives = 88/290 (30%), Gaps = 73/290 (25%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
           +   VIG  P   V +      G + AV  V VA     P       +++      + H 
Sbjct: 27  ELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHP 86

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG-------MRLRIAMGM 412
           + V L+     +      MVFE+     L   I  +      +        MR +I   +
Sbjct: 87  HIVELLETYSSDGMLY--MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMR-QILEAL 143

Query: 413 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATS 464
            YC    H  N  I H        L +S          KL    ++        ++  + 
Sbjct: 144 RYC----HDNN--IIHRDVKPHCVLLASK---ENSAPVKLGGFGVA-------IQLGESG 187

Query: 465 KKLSS--------APSASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLED--WA 507
                        AP   ++   Y         GV+LF +++G LP+      L +    
Sbjct: 188 LVAGGRVGTPHFMAPEV-VKREPYGKPVDVWGCGVILFILLSGCLPFYGTKERLFEGIIK 246

Query: 508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 553
             Y                  +  Q   + E    L++  +  DP +R T
Sbjct: 247 GKY----------------KMNPRQWSHISESAKDLVRRMLMLDPAERIT 280

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 47/283 (16%), Positives = 82/283 (28%), Gaps = 74/283 (26%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAV--ASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKN 360
            +G    G V+K     +G   AV  +       KD       +   ++ +  KV  H  
Sbjct: 64  RLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKD-----RARKLAEVGSHEKVGQHPC 118

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMRLRIAMGMAYCL 416
            V L    EE       +  E     +L +H        L     WG      +     L
Sbjct: 119 CVRLEQAWEEGGIL--YLQTELC-GPSLQQHCE-AWGASLPEAQVWGYLRDTLLA----L 170

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSAS-- 474
            H+H     + H  +  + + L      KL D                 +L +A +    
Sbjct: 171 AHLHSQG--LVHLDVKPANIFLGPRGRCKLGDF------------GLLVELGTAGAGEVQ 216

Query: 475 -----------LESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 516
                      L+ + Y         G+ + E+                       G Q 
Sbjct: 217 EGDPRYMAPELLQGS-YGTAADVFSLGLTILEVACNMELP------------HGGEGWQQ 263

Query: 517 LQQ-FVDPTLSS-FDEEQLETLGELIKSCVRADPEKRPTMRDI 557
           L+Q ++ P  ++    E    L  ++   +  DP+ R T   +
Sbjct: 264 LRQGYLPPEFTAGLSSE----LRSVLVMMLEPDPKLRATAEAL 302

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 5   CRNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
             N+KDL +         P I  L++++ + +     +         L  L +LD  H+ 
Sbjct: 65  AHNIKDLTINNIHATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 61  FSGPLPNDLGINHSLTILLLDNNDFVGSLSP--EIYKLQVLS 100
               +   +     +  + L  N  +  + P   + +L+ L+
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLN 165

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 53/244 (21%), Positives = 93/244 (38%), Gaps = 64/244 (26%)

Query: 341 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEE--EEPFTRMMVFEYAPNGTLFEHI----HI 394
           ++  + +++I  L    H + + L     +    P    MV EY   G LF++I     +
Sbjct: 53  DVVGKIKREIQNLKLFRHPHIIKLY----QVISTPTDFFMVMEYVSGGELFDYICKHGRV 108

Query: 395 KESEHLDWGMRL--RIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKL 446
           +E E      RL  +I   + YC    H+    + H      N L      L     AK+
Sbjct: 109 EEME----ARRLFQQILSAVDYC----HRHM--VVHRDLKPENVL------LDAHMNAKI 152

Query: 447 SDLSFWNEIAMAEMAATS-------------KKLSSAPSASLESNVYNFGVLLFEMVTGR 493
           +D    N ++  E   TS              +L + P    E ++++ GV+L+ ++ G 
Sbjct: 153 ADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGP----EVDIWSCGVILYALLCGT 208

Query: 494 LPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 553
           LP+  D+  +         G      F  P   +           L+   ++ DP KR T
Sbjct: 209 LPF--DDEHVPTLFKKIRGG-----VFYIPEYLNRSVA------TLLMHMLQVDPLKRAT 255

Query: 554 MRDI 557
           ++DI
Sbjct: 256 IKDI 259

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
              LK L +     +    + +L+ + S+ L NN       E  G L  L  L    N+ 
Sbjct: 264 LTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

Query: 62  SGPLPNDLGINHSLTILLLDNN 83
           +   P  L     +      N 
Sbjct: 324 TDIRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.9 bits (115), Expect = 5e-06
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
             ++  L + G        I+ LT+++ + L  N  + I P     L +L  L  G N  
Sbjct: 43  LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI 100

Query: 62  SGPLPNDLGINHSLTILLLDNN 83
           +      L    +L  L L+ +
Sbjct: 101 TDISA--LQNLTNLRELYLNED 120

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 9e-06
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
              L  L +     T    + +L+ +  + +  N  S I      +L +L++L+ G N  
Sbjct: 220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQI 277

Query: 62  SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
           S      L     L  L L+NN         I  L  L+ 
Sbjct: 278 SDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 26/103 (25%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGI--------------------- 40
              L +L +     T    +Q+LT+++ + L  ++ S I                     
Sbjct: 87  LVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLS 146

Query: 41  IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 83
                  +  L  L    +      P  +     L  L L+ N
Sbjct: 147 DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 7/82 (8%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
             +L  L L          + SLT +       N  + I P     +  L  L  G+N  
Sbjct: 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233

Query: 62  SGPLPNDLGINHSLTILLLDNN 83
           +   P  L     LT L +  N
Sbjct: 234 TDLSP--LANLSQLTWLEIGTN 253

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 5   CRNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
              LK L L       + PE QS   +  I LRNN    +I +     + LE  D   N 
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 61  FS-GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
           F  G L +    N  +  +       +   + E   +  L  
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 13/63 (20%), Positives = 22/63 (34%)

Query: 21 IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 80
           Q+    K   + ++S    +         ++ LD   N  S     DL     L +L L
Sbjct: 6  KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 81 DNN 83
           +N
Sbjct: 66 SSN 68

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 14/101 (13%)

Query: 6   RNLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            N+K+L L G     ++   +   T ++ + L +N     +      L  L  LD  +N 
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91

Query: 61  FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYK-LQVLS 100
                  +L +  S+  L   NN+    +S    +  + + 
Sbjct: 92  VQ-----ELLVGPSIETLHAANNNI-SRVSCSRGQGKKNIY 126

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 12/102 (11%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            +++ L         ++    Q   +I    L NN  + +     G    ++ LD   N 
Sbjct: 99  PSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 61  FSG-PLPNDLGINHSLTILLLDNNDFVGSLSPEIY--KLQVL 99
                       + +L  L L  N     +  ++   KL+ L
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTL 196

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 15/103 (14%)

Query: 6   RNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 65
             L+ L L      E+     I+++   NN+ S +        +  + +   +N  +   
Sbjct: 80  STLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLR 136

Query: 66  PNDLGINHSLTILLLDNN--------DFVGSLSPEIYKLQVLS 100
             D G    +  L L  N        +   S       L+ L+
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD----TLEHLN 175

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 46/281 (16%), Positives = 96/281 (34%), Gaps = 65/281 (23%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
             +  +G    G V++    S+        V V    D     +V  +K+I  L+   H+
Sbjct: 8   MIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKV-KGTD-----QVLVKKEISILNIARHR 61

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL---DWGMRLR-IAMGMAYC 415
           N ++L    E  E     M+FE+     +FE I    +  L   +    +  +   + + 
Sbjct: 62  NILHLHESFESMEELV--MIFEFISGLDIFERI-NTSAFELNEREIVSYVHQVCEALQFL 118

Query: 416 LEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSK 465
               H  N  I H      N +  +          K+ +   +           +    +
Sbjct: 119 ----HSHN--IGHFDIRPENIIYQT----RRSSTIKIIEFGQARQLKPGDNFRLLFTAPE 168

Query: 466 KLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLED-WAADYLSGVQP 516
               AP        S  +++++ G L++ +++G  P+L +     +E+   A+Y      
Sbjct: 169 YY--APEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEY------ 220

Query: 517 LQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 553
                     +FDEE  + +       +   +  + + R T
Sbjct: 221 ----------TFDEEAFKEISIEAMDFVDRLLVKERKSRMT 251

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 20/136 (14%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 358
           +    +GS     V K      G E A   +         + +  +   ++++ L ++ H
Sbjct: 8   EMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRH 67

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAMGM 412
            N + L    E +      ++ E    G LF+ +     + E E       ++ +I  G+
Sbjct: 68  PNIITLHDIFENKTDVV--LILELVSGGELFDFLAEKESLTEDEATQF---LK-QILDGV 121

Query: 413 AYCLEHMHQLNPPIAH 428
            Y     H     IAH
Sbjct: 122 HYL----HSKR--IAH 131

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 6/110 (5%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
              L+ L L+               +K++ L +N  +  +   F     +  +   +N  
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226

Query: 62  SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 111
              +   L  + +L    L  N F    +   +  +      V +  +  
Sbjct: 227 VL-IEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKK 274

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 7  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
            K   +           + QS  ++K + L  N  S I         +LE+L+   N  
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 62 SGPLPNDLGINHSLTILLLDNN 83
                DL    +L  L L+NN
Sbjct: 71 YE--TLDLESLSTLRTLDLNNN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 6/111 (5%)

Query: 5   CRNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
              LK L L       + PE QS   +  I LRNN    +I +     + LE  D   N 
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 61  FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 111
           F      D   + +  +  +              +  V +           
Sbjct: 249 FHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 21 IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 80
           Q+    K   + ++S    +         ++ LD   N  S     DL     L +L L
Sbjct: 6  KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 81 DNNDFVGSLSPEIYKLQVL 99
           +N      + ++  L  L
Sbjct: 66 SSNVL--YETLDLESLSTL 82

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 7   NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
           +++ L         ++    Q   +I    L NN  + +     G    ++ LD   N  
Sbjct: 100 SIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 62  SG-PLPNDLGINHSLTILLLDNNDFVGSLSPEIY--KLQVL 99
                      + +L  L L  N     +  ++   KL+ L
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTL 196

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 5   CRNLKDLCLEGTLAPEIQSL----THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
               ++L L G   P I++L        +I   +N    +  +GF  L  L+ L   +N 
Sbjct: 18  AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNR 75

Query: 61  FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 99
                         LT L+L NN  +  L  ++  L  L
Sbjct: 76  ICRIGEGLDQALPDLTELILTNN-SLVELG-DLDPLASL 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 5   CRNLKDLCLEGTLAPEI---QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
                 +        ++     L  +K++++ NN    I       L +L  L   +N+ 
Sbjct: 41  LDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

Query: 62  SGPLPND---LGINHSLTILLLDNN 83
                 D   L    SLT L +  N
Sbjct: 101 VE--LGDLDPLASLKSLTYLCILRN 123

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 20/136 (14%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 358
           D    +GS     V K    S G++ A   +     K   + +  +   +++  L ++ H
Sbjct: 14  DTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQH 73

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAMGM 412
            N + L    E +      ++ E    G LF+ +     + E E       ++ +I  G+
Sbjct: 74  PNVITLHEVYENKTDVI--LILELVAGGELFDFLAEKESLTEEEATEF---LK-QILNGV 127

Query: 413 AYCLEHMHQLNPPIAH 428
            Y     H L   IAH
Sbjct: 128 YYL----HSLQ--IAH 137

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 51/248 (20%), Positives = 83/248 (33%), Gaps = 56/248 (22%)

Query: 336 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLFEHI-- 392
                +     +K+I     +NH+N V   G   E        +  EY   G LF+ I  
Sbjct: 42  MKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG---NIQYLFLEYCSGGELFDRIEP 98

Query: 393 HIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKL 446
            I   E        ++  G+ Y     H +   I H      N L      L E    K+
Sbjct: 99  DIGMPEPDAQRFFHQLMAGVVYL----HGIG--ITHRDIKPENLL------LDERDNLKI 146

Query: 447 SD--LSFWNEIAMAEMAATSKKLSS--------APS-------ASLESNVYNFGVLLFEM 489
           SD  L+      +       + L+         AP         +   +V++ G++L  M
Sbjct: 147 SDFGLA-----TVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAM 201

Query: 490 VTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPE 549
           + G LP+  D  S  D   +Y    +  ++         D   L     L+   +  +P 
Sbjct: 202 LAGELPW--DQPS--DSCQEYSDWKE--KKTYLNPWKKIDSAPL----ALLHKILVENPS 251

Query: 550 KRPTMRDI 557
            R T+ DI
Sbjct: 252 ARITIPDI 259

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 7   NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 63
           +L+ +          PE+Q+L  + +I   NNS   +          LE +  G+N    
Sbjct: 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILE- 228

Query: 64  PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES 102
               +L     LT +  DNN    +L      L+ L+  
Sbjct: 229 -ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVR 265

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 7   NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 63
            L+ L +        PE+Q+ + +K I + NNS    +P+       LE +  G+N    
Sbjct: 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLEE 187

Query: 64  PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 99
            LP +L     LT +  DNN     L      L+ +
Sbjct: 188 -LP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESI 220

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 19/123 (15%), Positives = 32/123 (26%), Gaps = 22/123 (17%)

Query: 6   RNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEE----------- 50
             L++          +  E +++          + +    P G GE  E           
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 51  --LEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQ 108
                L+  +   S  LP        L  L+   N     L      L+ L     +   
Sbjct: 71  RQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 109 LSS 111
           LS 
Sbjct: 126 LSD 128

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 18/112 (16%)

Query: 4   MCRNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           + R   +L L       + +   H++S++   NS +  +PE    L+ L V +      S
Sbjct: 69  LDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 127

Query: 63  GPLPN----DLGINH-----------SLTILLLDNNDFVGSLSPEIYKLQVL 99
              P      +  N             L I+ +DNN     L      L+ +
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI 178

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 15/97 (15%)

Query: 17  LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG------ 70
           + P   S T ++  +  +++ +  +P     ++         + +    P   G      
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 71  -------INHSLTILLLDNNDFVGSLSPEIYKLQVLS 100
                  ++     L L+N     SL      L+ L 
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESLV 97

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 10/97 (10%)

Query: 7   NLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 65
           NL  L         +      ++ + + NN     +P        LE L    N+ +  +
Sbjct: 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAE-V 352

Query: 66  PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES 102
           P       +L  L ++ N            ++ L  +
Sbjct: 353 PELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRMN 385

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
             +L+ +          PE+Q+L  + +I   NN     +P+    LE L V D   N  
Sbjct: 214 PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRD---NYL 269

Query: 62  SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 100
           +  LP       SLT L +  N F   LS     L  L+
Sbjct: 270 TD-LPELPQ---SLTFLDVSENIF-SGLSELPPNLYYLN 303

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 8e-07
 Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 7   NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP 66
           ++     +     E  +L + K +  +N++   +         ++E+L+           
Sbjct: 33  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 92

Query: 67  NDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 100
                 H++  L +  N     L P ++     L VL 
Sbjct: 93  YAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 129

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
              L  L L+    T    + +   +  + L  N    I+   F +++ LE L   +N  
Sbjct: 231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 62  SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
              L        +L +L L +N  +  +     +   L  
Sbjct: 291 VA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 8e-06
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 5   CRNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            + L+ L +       L    Q +  +K + L +N     +     + + LE L   HN+
Sbjct: 277 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335

Query: 61  FSGPLPNDLGINHSLTILLLDNNDF 85
               L   L  +H+L  L L +ND+
Sbjct: 336 IV-TLK--LSTHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 10/103 (9%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
           R ++ L L       +          I+ + +  N+   + P  F  +  L VL    N+
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 61  FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVL 99
            S            LT L + NN+    +  +       LQ L
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNL 176

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
             L  L LE     +L   I  +   + ++ + NN+   I  + F     L+ L    N 
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 61  FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 100
            +  +   L +  SL    +  N    +L+  I  ++ L 
Sbjct: 183 LTH-VD--LSLIPSLFHANVSYNLL-STLAIPI-AVEELD 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 7   NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP 66
           ++     +     E  +L + K +  +N++   +         ++E+L+           
Sbjct: 27  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 86

Query: 67  NDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 100
                 H++  L +  N  +  L P ++     L VL 
Sbjct: 87  YAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLV 123

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 4   MCRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
           +   L  L L+    T    + +   +  + L  N    I+   F +++ LE L   +N 
Sbjct: 224 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 61  FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
               L        +L +L L +N  +  +     +   L  
Sbjct: 284 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 5   CRNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            + L+ L +       L    Q +  +K + L +N     +     + + LE L   HN+
Sbjct: 271 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 61  FSGPLPNDLGINHSLTILLLDNNDF 85
               L   L  +H+L  L L +ND+
Sbjct: 330 IV-TLK--LSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
             ++ L +       L P + Q++  +  ++L  N  S +    F    +L  L   +NN
Sbjct: 93  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152

Query: 61  FSGPLPNDLGIN-HSLTILLLDNN 83
               + +D      SL  L L +N
Sbjct: 153 LER-IEDDTFQATTSLQNLQLSSN 175

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
           R ++ L L       +          I+ + +  N+   + P  F  +  L VL    N+
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 61  FSGPLPNDLGIN-HSLTILLLDNNDFVGSLSPEI----YKLQVL 99
            S  LP  +  N   LT L + NN+    +  +       LQ L
Sbjct: 129 LSS-LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNL 170

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
             L  L LE     +L   I  +   + ++ + NN+   I  + F     L+ L    N 
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176

Query: 61  FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 100
            +  +   L +  SL    +  N    +L+  I  ++ L 
Sbjct: 177 LTH-VD--LSLIPSLFHANVSYNLL-STLAIPI-AVEELD 211

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 43/270 (15%)

Query: 306 IGSSPIGTVYKGT-LSNGVEIAVASVS---VASAKDWPKNLEVQFRKKIDTLSKVNHKNF 361
           +GS   G V+         E+ V  +    V            +   +I  LS+V H N 
Sbjct: 32  LGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANI 91

Query: 362 VNLIGFCEEEEPFTRMMVFEYAPNGT-LFEHI--HIKESEHLDWGMRLRIAMGMAYCLEH 418
           + ++   E +  F   +V E   +G  LF  I  H +  E L   +  ++   + Y    
Sbjct: 92  IKVLDIFENQGFF--QLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYL--- 146

Query: 419 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATS---------KKLSS 469
               +  I H  +    + + ED+  KL D      +   ++  T          + L  
Sbjct: 147 -RLKD--IIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMG 203

Query: 470 APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 529
            P    E  +++ GV L+ +V    P+            + +           P L S +
Sbjct: 204 NPYRGPELEMWSLGVTLYTLVFEENPF--------CELEETVEA-----AIHPPYLVSKE 250

Query: 530 EEQLETLGELIKSCVRADPEKRPTMRDIAA 559
                    L+   ++  PE+R T+  +  
Sbjct: 251 LM------SLVSGLLQPVPERRTTLEKLVT 274

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 9e-07
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
              L +L L          I +L ++  + L  N+ S I P     L +L+ L F +N  
Sbjct: 286 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343

Query: 62  SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
           S    + L    ++  L   +N         +  L  +++
Sbjct: 344 SD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQ 379

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
              +  L  +         ++ L ++  I   NN  + I P     L +L  +   +N  
Sbjct: 45  LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 102

Query: 62  SGPLPNDLGINHSLTILLLDNN 83
           +   P  L    +LT L L NN
Sbjct: 103 ADITP--LANLTNLTGLTLFNN 122

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
             NL +L L G        + SLT++  + L NN  S + P     L +L  L  G N  
Sbjct: 220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277

Query: 62  SGPLPNDLGINHSLTILLLDNN 83
           S   P  L    +LT L L+ N
Sbjct: 278 SNISP--LAGLTALTNLELNEN 297

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 9/111 (8%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
              L+ L       +    + +LT+I  +   +N  S + P     L  +  L      +
Sbjct: 330 LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387

Query: 62  SGPLPNDLGINHSLTILLLDNNDFVGSLSP-EIYKLQVLSESQVDEGQLSS 111
           +      +    +++I     N     ++P  I      +E  +     S 
Sbjct: 388 TNA---PVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY 435

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
              L+ L +     +    +  LT+++S+I  NN  S I P   G L  L+ L    N  
Sbjct: 176 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233

Query: 62  SGPLPNDLGINHSLTILLLDNN 83
                  L    +LT L L NN
Sbjct: 234 KD--IGTLASLTNLTDLDLANN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
             NL  L L     +    +  LT ++ +   N   + + P     L  LE LD   N  
Sbjct: 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERLDISSNKV 189

Query: 62  SGPLPNDLGINHSLTILLLDNN 83
           S    + L    +L  L+  NN
Sbjct: 190 SD--ISVLAKLTNLESLIATNN 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
             NL  L L     T    +++LT++  + L +N+ S I       L  L+ L FG N  
Sbjct: 111 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQV 167

Query: 62  SGPLPNDLGINHSLTILLLDNN 83
           +   P  L    +L  L + +N
Sbjct: 168 TDLKP--LANLTTLERLDISSN 187

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 53/273 (19%), Positives = 108/273 (39%), Gaps = 56/273 (20%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
           ++G    G V+K    + G+++A   +     KD     + + + +I  +++++H N + 
Sbjct: 96  ILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKD-----KEEVKNEISVMNQLDHANLIQ 150

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 423
           L    E +      +V EY   G LF+ I I ES +L     +     +   + HMHQ+ 
Sbjct: 151 LYDAFESKNDIV--LVMEYVDGGELFDRI-IDESYNLTELDTILFMKQICEGIRHMHQMY 207

Query: 424 PPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKLSSAP-- 471
             I H      N L  +     +    K+ D  L+  +     +     T + L  AP  
Sbjct: 208 --ILHLDLKPENILCVN----RDAKQIKIIDFGLARRYKPREKLKVNFGTPEFL--APEV 259

Query: 472 ----SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLED-WAADYLSGVQPLQQFVDPT 524
                 S  +++++ GV+ + +++G  P+L DN   +L +  A  +              
Sbjct: 260 VNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRW-------------- 305

Query: 525 LSSFDEEQLETLGE----LIKSCVRADPEKRPT 553
               ++E+ + + E     I   +  +   R +
Sbjct: 306 --DLEDEEFQDISEEAKEFISKLLIKEKSWRIS 336

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 58/284 (20%), Positives = 101/284 (35%), Gaps = 64/284 (22%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFV 362
            +G        K     +    AV  +S        K +E   +K+I  L     H N V
Sbjct: 18  PLGEGSFSICRKCVHKKSNQAFAVKIIS--------KRMEANTQKEITALKLCEGHPNIV 69

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMH 420
            L     ++      +V E    G LFE I  K+  SE         I   +   + HMH
Sbjct: 70  KLHEVFHDQLHTF--LVMELLNGGELFERIKKKKHFSET----EASYIMRKLVSAVSHMH 123

Query: 421 QLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLSS--- 469
            +   + H      N L +      ++   K+ D   +             ++ L +   
Sbjct: 124 DVG--VVHRDLKPENLLFTDE---NDNLEIKIIDFGFA-------RLKPPDNQPLKTPCF 171

Query: 470 -----APSASLESNVYN-------FGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL 517
                AP   L  N Y+        GV+L+ M++G++P+   + SL   +A  +     +
Sbjct: 172 TLHYAAPEL-LNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEI-----M 225

Query: 518 QQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 557
           ++       SF+ E  + + +    LI+  +  DP KR  M  +
Sbjct: 226 KKIKKGDF-SFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGL 268

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 65/290 (22%), Positives = 106/290 (36%), Gaps = 73/290 (25%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
           +   ++G    G V K        E AV  ++ ASAK   K+      ++++ L K++H 
Sbjct: 25  NIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK--NKDTS-TILREVELLKKLDHP 81

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLE 417
           N + L    E+   F   +V E    G LF+ I  ++  SEH    +  ++  G+ Y   
Sbjct: 82  NIMKLFEILEDSSSFY--IVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYM-- 137

Query: 418 HMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKL 467
             H+ N  I H      N L  S     +D   K+ D  LS  F     M +   T+  +
Sbjct: 138 --HKHN--IVHRDLKPENILLESK---EKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYI 190

Query: 468 SSAP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
             AP     +   + +V++ GV+L+ +                     LSG  P   F  
Sbjct: 191 --APEVLRGTYDEKCDVWSAGVILYIL---------------------LSGTPP---FYG 224

Query: 523 PTLS-----------SFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 557
                          +FD  Q  T+ +    LI+  +   P  R T    
Sbjct: 225 KNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQC 274

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 43/255 (16%), Positives = 80/255 (31%), Gaps = 50/255 (19%)

Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEE-PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 404
            +++  T  ++   + V +  F E +   +   +         L   +  +    L    
Sbjct: 81  MQREARTAGRLQEPHVVPIHDFGEIDGQLY---VDMRLINGVDLAAML--RRQGPLAPPR 135

Query: 405 RLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 458
            + I   +   L+  H       H      N L      ++ D  A L D  F   IA A
Sbjct: 136 AVAIVRQIGSALDAAHAAG--ATHRDVKPENIL------VSADDFAYLVD--F--GIASA 183

Query: 459 E----MAATSKKLSSAPSASLE----------SNVYNFGVLLFEMVTGRLPYLVDNGSLE 504
                +      + +    + E          +++Y    +L+E +TG  PY  D  S+ 
Sbjct: 184 TTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSV- 242

Query: 505 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKR-PTMRDIAAILRE 563
                       + Q + P  S+           +I   +  +PE R  T  D++A    
Sbjct: 243 --------MGAHINQAI-PRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHA 293

Query: 564 -ITGITPDGAIPKLS 577
            +     D A   L 
Sbjct: 294 ALATADQDRATDILR 308

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 57/245 (23%), Positives = 94/245 (38%), Gaps = 66/245 (26%)

Query: 341 NLEVQFRKKIDTLSKVNHKNFVNL---IGFCEEEEPFTRMMVFEYAPNGTLFEHI----H 393
           ++  + R++I  L    H + + L   I       P    MV EY   G LF++I     
Sbjct: 58  DVVGKIRREIQNLKLFRHPHIIKLYQVI-----STPSDIFMVMEYVSGGELFDYICKNGR 112

Query: 394 IKESEHLDWGMRL--RIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAK 445
           + E E      RL  +I  G+ YC    H+    + H      N L      L     AK
Sbjct: 113 LDEKE----SRRLFQQILSGVDYC----HRHM--VVHRDLKPENVL------LDAHMNAK 156

Query: 446 LSDLSFWNEIAMAEMAATS-------------KKLSSAPSASLESNVYNFGVLLFEMVTG 492
           ++D    N ++  E   TS              +L + P    E ++++ GV+L+ ++ G
Sbjct: 157 IADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGP----EVDIWSSGVILYALLCG 212

Query: 493 RLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP 552
            LP+  D+  +         G      F  P   +           L+K  ++ DP KR 
Sbjct: 213 TLPF--DDDHVPTLFKKICDG-----IFYTPQYLNPSVI------SLLKHMLQVDPMKRA 259

Query: 553 TMRDI 557
           T++DI
Sbjct: 260 TIKDI 264

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 67/245 (27%)

Query: 341 NLEVQFRKKIDTLSKVNHKNFVNL---IGFCEEEEPFTRMMVFEYAPNGTLFEHI----H 393
           ++ ++  ++I  L  + H + + L   I       P   +MV EYA  G LF++I     
Sbjct: 51  DMHMRVEREISYLKLLRHPHIIKLYDVI-----TTPTDIVMVIEYA-GGELFDYIVEKKR 104

Query: 394 IKESEHLDWGMRL--RIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAK 445
           + E E    G R   +I   + YC    H+    I H      N L      L ++   K
Sbjct: 105 MTEDE----GRRFFQQIICAIEYC----HRHK--IVHRDLKPENLL------LDDNLNVK 148

Query: 446 LSDLSFWNEIAMAEMAATS-------------KKLSSAPSASLESNVYNFGVLLFEMVTG 492
           ++D    N +       TS              KL + P    E +V++ G++L+ M+ G
Sbjct: 149 IADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGP----EVDVWSCGIVLYVMLVG 204

Query: 493 RLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP 552
           RLP+  D+  + +      S       +V P   S   +       LI+  + ADP +R 
Sbjct: 205 RLPF--DDEFIPNLFKKVNSC-----VYVMPDFLSPGAQ------SLIRRMIVADPMQRI 251

Query: 553 TMRDI 557
           T+++I
Sbjct: 252 TIQEI 256

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 5   CRNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
           C NL+ L L+     T+  +   SL  ++ + L +N  S +    FG L  L+ L+   N
Sbjct: 49  CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108

Query: 60  NFSG-PLPNDLGINHSLTILLLDNNDFVGSLSPE----IYKLQVLS 100
            +    + +      +L  L + N +    +       +  L  L 
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 6   RNLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHN 59
            +L+ L L      +L+      L+ +K + L  N +  +     F  L  L+ L  G+ 
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 60  N-FSGPLPNDLGINHSLTILLLDNNDFVGSLSPE----IYKLQVLS 100
             FS     D     SL  L +       +   +    I  +  L+
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLT 178

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 5   CRNLKDLCLEG------TLAPEIQSLTHIKSIIL-RNNSFSGIIPEGFGELEELEVLDFG 57
             +LK L L G       +     +LT+++++ +    +FS I    F  L  L  L+  
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 58  HNNFSGPLPNDLGINHSLTILLLDNN 83
             +        L     +  L L  +
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLS 182

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 23  SLTHIKSIILRNNSFSGI--IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 80
           +   +++++L  N    +    E    L+ L  LD   N F  P+P+       +  L L
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 81  DNNDFVGSLSPEI-YKLQVL 99
            +      +   I   L+VL
Sbjct: 418 SSTGIR-VVKTCIPQTLEVL 436

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 14/149 (9%)

Query: 21  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 80
              LT +  + ++  S      +    + ++  L    +  +  L     I  S+  L L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 81  DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLL 140
            +             L     S +   ++SS  KK  +     +      +   + R +L
Sbjct: 204 RDT-----------NLARFQFSPLPVDEVSSPMKK-LAFRGSVLTDESFNELLKLLRYIL 251

Query: 141 QINPFRNLKGRILGIAPTSSPPPSSDAIP 169
           +++        + G+      P  SD + 
Sbjct: 252 ELSEVEFDDCTLNGL--GDFNPSESDVVS 278

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 21  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 80
           +++  +++ +IL+++  + I  + F  L  LE LD   N+ S    +  G   SL  L L
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 81  DNNDF----VGSLSPEIYKLQVLS 100
             N +    V SL P +  LQ L 
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLR 129

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 7   NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS---G 63
           ++    L   L+     L  +K I + N+    +       L+ LE LD   N       
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351

Query: 64  PLPNDLGINHSLTILLLDNNDF 85
                 G   SL  L+L  N  
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 3/82 (3%)

Query: 6   RNLKDLCLEGTLAPEIQS-LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 64
           + L+ L +           L  ++ + +  N    +          L V+    N     
Sbjct: 431 QTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSV 488

Query: 65  LPNDLGINHSLTILLLDNNDFV 86
                    SL  + L  N + 
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 24  LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 83
              +KS+ L  N  + I          L+VL    +  +    +      SL  L L +N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 84  DFVGSLSPEIY----KLQVL 99
               SLS   +     L+ L
Sbjct: 85  HLS-SLSSSWFGPLSSLKYL 103

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 51/284 (17%), Positives = 97/284 (34%), Gaps = 73/284 (25%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPK-NLEVQFRKKIDTLSKVNHK--N 360
           ++GS   G+VY G  +S+ + +A+  V      DW +     +   ++  L KV+     
Sbjct: 50  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 109

Query: 361 FVNLIGFCEEEEPFTRMMVFEYA-PNGTLFEHI----HIKESE--HLDWGMRLRIAMGMA 413
            + L+ + E  + F  +++ E   P   LF+ I     ++E            ++   + 
Sbjct: 110 VIRLLDWFERPDSF--VLILERPEPVQDLFDFITERGALQEELARSF---FW-QVLEAVR 163

Query: 414 YCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEI------------ 455
           +C    H     + H      N L             KL D      +            
Sbjct: 164 HC----HNCG--VLHRDIKDENILID-----LNRGELKLIDFGSGALLKDTVYTDFDGTR 212

Query: 456 --AMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 513
             +  E                 + V++ G+LL++MV G +P+        +   + + G
Sbjct: 213 VYSPPEW--IRYHRYHGR----SAAVWSLGILLYDMVCGDIPF--------EHDEEIIRG 258

Query: 514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
                Q       S + +       LI+ C+   P  RPT  +I
Sbjct: 259 -----QVFFRQRVSSECQH------LIRWCLALRPSDRPTFEEI 291

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 42/289 (14%), Positives = 93/289 (32%), Gaps = 65/289 (22%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAV--ASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKN 360
            IGS   G+V+K     +G   A+  +   +A + D     E    +++   + +  H +
Sbjct: 18  KIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVD-----EQNALREVYAHAVLGQHSH 72

Query: 361 FVNLIGFCEEEEPFTRMMVF-EYAPNGTLFEHI--HIKESEHLD----WGMRLRIAMGMA 413
            V       E++    M++  EY   G+L + I  + +   +        + L++  G  
Sbjct: 73  VVRYFSAWAEDD---HMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRG-- 127

Query: 414 YCLEHMHQLNPPIAH------N-YLNSSAVHLTEDYAAKLSDLSFWNE---IAMAEMAAT 463
             L ++H ++  + H      N +++ +++           D +       I        
Sbjct: 128 --LRYIHSMS--LVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTR 183

Query: 464 SKKLSS--------APSASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAA 508
                         A     E+  +          + +             NG       
Sbjct: 184 ISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLP--RNGDQ----- 236

Query: 509 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
                   ++Q   P +     ++     EL+K  +  DPE+RP+   +
Sbjct: 237 -----WHEIRQGRLPRIPQVLSQEFT---ELLKVMIHPDPERRPSAMAL 277

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 23/157 (14%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
           D    +G      V +    + G+E A   ++        ++ + +  ++     K+ H 
Sbjct: 9   DVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS--ARDFQ-KLEREARICRKLQHP 65

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLE 417
           N V L    +EE      +VF+    G LFE I  +E  SE        +I   +AYC  
Sbjct: 66  NIVRLHDSIQEESFHY--LVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYC-- 121

Query: 418 HMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD 448
             H     I H      N L +S     +  A KL+D
Sbjct: 122 --HSNG--IVHRNLKPENLLLASK---AKGAAVKLAD 151

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 51/248 (20%), Positives = 83/248 (33%), Gaps = 56/248 (22%)

Query: 336 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLFEHI-- 392
                +     +K+I     +NH+N V   G   E        +  EY   G LF+ I  
Sbjct: 42  MKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG---NIQYLFLEYCSGGELFDRIEP 98

Query: 393 HIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKL 446
            I   E        ++  G+ Y     H +   I H      N L      L E    K+
Sbjct: 99  DIGMPEPDAQRFFHQLMAGVVYL----HGIG--ITHRDIKPENLL------LDERDNLKI 146

Query: 447 SD--LSFWNEIAMAEMAATSKKLSS--------APS-------ASLESNVYNFGVLLFEM 489
           SD  L+      +       + L+         AP         +   +V++ G++L  M
Sbjct: 147 SDFGLA-----TVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAM 201

Query: 490 VTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPE 549
           + G LP+  D  S  D   +Y    +  ++         D   L     L+   +  +P 
Sbjct: 202 LAGELPW--DQPS--DSCQEYSDWKE--KKTYLNPWKKIDSAPL----ALLHKILVENPS 251

Query: 550 KRPTMRDI 557
            R T+ DI
Sbjct: 252 ARITIPDI 259

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            +L+ L LE     ++  E    L  +  + LR+ + + I    F  L  L+VL+  H  
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 61  FSGPLPNDLGINHSLTILLLDNNDF 85
           +   +  +     +LT L + + + 
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNL 236

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 5   CRNLKDLCLEG-----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
              LK L +       T+ P      ++ S+ + + + + +       L  L  L+  +N
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 60  NFSGPLPNDLGINHSLTILLLDNN 83
             S    + L     L  + L   
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGG 282

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            NLK L +       ++      L  ++ + L   + + I  E    L  L VL   H N
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 61  FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 101
            +          + L +L + +  ++ +++P       L+ 
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            +L++L L       + P    +L +++++ LR+N    I    F  L  L  LD   N 
Sbjct: 56  PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115

Query: 61  FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVL 99
               L       ++L  L + +ND V  +S         L+ L
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQL 157

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 5/83 (6%)

Query: 6   RNLKDLCLEGTLAPEIQS-----LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
              + L L       +         H++ + L  N  S + P  F  L  L  L    N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 61  FSGPLPNDLGINHSLTILLLDNN 83
                        +LT L +  N
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISEN 114

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            NL  L +       L   + Q L ++KS+ + +N    I    F  L  LE L     N
Sbjct: 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163

Query: 61  FSGPLPNDLGINHSLTILLLDNN 83
            +      L   H L +L L + 
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHL 186

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 22  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 81
           ++L  +K + L  N  + I  E F  L+ L+VL+  +N       ++      +  + L 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 82  NNDFVGSLSPEIY----KLQVL 99
            N     +  + +    KLQ L
Sbjct: 347 KNHI-AIIQDQTFKFLEKLQTL 367

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 9e-06
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 22  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN-HSLTILLL 80
           Q L   + ++L  N    +    F  LE+L++L+ G       +  +   N  +L IL L
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 81  DNNDFVGSLSPEI----YKLQVL 99
            ++     L P+     + L  L
Sbjct: 81  GSSKIY-FLHPDAFQGLFHLFEL 102

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 2   CVMCRNLKDLCLEGT----------LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEEL 51
                +L+ L L                  + L+H++ + L +N  + + P  F  L  L
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506

Query: 52  EVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYK 95
             L    N  +  L ++  +  +L IL +  N  + + +P+++ 
Sbjct: 507 RGLSLNSNRLTV-LSHND-LPANLEILDISRNQLL-APNPDVFV 547

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 7   NLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 65
            L       T+  E  ++L +++ + L ++    + P+ F  L  L  L       S  +
Sbjct: 54  ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

Query: 66  PNDLGINH--SLTILLLDNNDF 85
             D    +  +LT L L  N  
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQI 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
           ++LK L L       +A E    L +++ + L  N    +    F  L ++  +D   N+
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349

Query: 61  FSGPLPNDLGINHSLTILLLDNNDF 85
            +            L  L L +N  
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 11/90 (12%)

Query: 21  IQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGPLPNDLGIN-----HS 74
           +  + H++ +IL  N FS    +    E   LE L  G N        +L  +       
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 75  LTILLLDNNDFVGSLSPEIY----KLQVLS 100
           L +L L++N    SL P ++     L+ LS
Sbjct: 482 LQVLYLNHNYLN-SLPPGVFSHLTALRGLS 510

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 10/102 (9%)

Query: 5   CRNLKDLCL------EGTLAPEI-QSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDF 56
             +L +L L      +  L     ++L  +  + L  N    +     FG+L  L+ +DF
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155

Query: 57  GHNNFSGPLPNDL-GINH-SLTILLLDNNDFVGSLSPEIYKL 96
             N       ++L  +   +L+   L  N     +S +  K 
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 6   RNLKDLCLEGTLAPEI-----QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            NL+ L L   L  E+       L  +  I L+ N  + I  + F  LE+L+ LD   N 
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

Query: 61  FSGPLPNDLGINHSLTILLLDNNDF 85
            +      +    S+  + L  N  
Sbjct: 374 LT-----TIHFIPSIPDIFLSGNKL 393

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 56/287 (19%), Positives = 92/287 (32%), Gaps = 77/287 (26%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
            F  V+GS     V+       G   A+  +  + A       +     +I  L K+ H+
Sbjct: 12  IFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFR-----DSSLENEIAVLKKIKHE 66

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLE 417
           N V L    E    +   +V +    G LF+ I  +   +E     +  ++   + Y   
Sbjct: 67  NIVTLEDIYESTTHYY--LVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYL-- 122

Query: 418 HMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS-FWNEIAMAEMAATSKKLS 468
             H+    I H      N L  +     E+    ++D  LS       M+    T   + 
Sbjct: 123 --HENG--IVHRDLKPENLLYLTP---EENSKIMITDFGLSKMEQNGIMSTACGTPGYV- 174

Query: 469 SAPSASLESNVYNFGVLLFEMVTGRLPY--LVDNGSLEDWAA---DY--LSGVQPLQQFV 521
            AP                E++  + PY   VD      W+     Y  L G  P   F 
Sbjct: 175 -AP----------------EVLAQK-PYSKAVDC-----WSIGVITYILLCGYPP---FY 208

Query: 522 DPTLS-----------SFDEEQLETLGE----LIKSCVRADPEKRPT 553
           + T S            F+    + + E     I   +  DP +R T
Sbjct: 209 EETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYT 255

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 39/162 (24%), Positives = 60/162 (37%), Gaps = 33/162 (20%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 358
           D    +G      V +    + G+E A   ++           + Q   ++     K+ H
Sbjct: 32  DVKEELGKGAFSVVRRCVHKTTGLEFAAKIIN----TKKLSARDFQKLEREARICRKLQH 87

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SE----HLDWGMRLRIAMGM 412
            N V L    +EE      +VF+    G LFE I  +E  SE    H    ++ +I   +
Sbjct: 88  PNIVRLHDSIQEESFHY--LVFDLVTGGELFEDIVAREFYSEADASHC---IQ-QILESI 141

Query: 413 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD 448
           AYC    H     I H      N L +S     +  A KL+D
Sbjct: 142 AYC----HSNG--IVHRNLKPENLLLASK---AKGAAVKLAD 174

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 53/288 (18%), Positives = 90/288 (31%), Gaps = 81/288 (28%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-KNFV 362
            +G      V +    S G E A   +         ++   +   +I  L         +
Sbjct: 36  ELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRG---QDCRAEILHEIAVLELAKSCPRVI 92

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD-----WGMRLRIAMGMAYCLE 417
           NL    E        ++ EYA  G +F     + +E +        ++ +I  G+ Y   
Sbjct: 93  NLHEVYENTSEII--LILEYAAGGEIFSLCLPELAEMVSENDVIRLIK-QILEGVYYL-- 147

Query: 418 HMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKL 467
             HQ N  I H      N L SS          K+ D  +S    +   + E+  T + L
Sbjct: 148 --HQNN--IVHLDLKPQNILLSSI---YPLGDIKIVDFGMSRKIGHACELREIMGTPEYL 200

Query: 468 SSAPSASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF 520
             AP   L  +           G++ + +                     L+   P   F
Sbjct: 201 --APEI-LNYDPITTATDMWNIGIIAYML---------------------LTHTSP---F 233

Query: 521 VDPTLS-----------SFDEEQLETLGE----LIKSCVRADPEKRPT 553
           V                 + EE   ++ +     I+S +  +PEKRPT
Sbjct: 234 VGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPT 281

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 58/303 (19%), Positives = 93/303 (30%), Gaps = 97/303 (32%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 358
                +G      V +   +  G E A   ++           + Q   ++      + H
Sbjct: 14  QLFEELGKGAFSVVRRCVKVLAGQEYAAMIIN----TKKLSARDHQKLEREARICRLLKH 69

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SE----HLDWGMRLRIAMGM 412
            N V L     EE      ++F+    G LFE I  +E  SE    H    ++ +I   +
Sbjct: 70  PNIVRLHDSISEEGHHY--LIFDLVTGGELFEDIVAREYYSEADASHC---IQ-QILEAV 123

Query: 413 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATS 464
            +C    HQ+   + H      N L +S     +  A KL+D  L+        E+    
Sbjct: 124 LHC----HQMG--VVHRNLKPENLLLASK---LKGAAVKLADFGLA-------IEVEGEQ 167

Query: 465 KKLSS--------APSASLESNVYNFGVLLFEMVTGRLPY--LVDNGSLEDWAAD---Y- 510
           +            +P                E++    PY   VD      WA     Y 
Sbjct: 168 QAWFGFAGTPGYLSP----------------EVLRKD-PYGKPVDL-----WACGVILYI 205

Query: 511 -LSGVQPLQQFVDPTLS-----------SFDEEQLETLGE----LIKSCVRADPEKRPTM 554
            L G  P   F D                F   + +T+      LI   +  +P KR T 
Sbjct: 206 LLVGYPP---FWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITA 262

Query: 555 RDI 557
            + 
Sbjct: 263 AEA 265

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 9e-06
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 5   CRNLKDLCLEGTLAPEIQ------SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 58
             ++K+L L+ + + E +          ++ +   N   + I      +L +L+ L+   
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSD 73

Query: 59  NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 99
           N  SG L        +LT L L  N  +  LS  I  L+ L
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLS-TIEPLKKL 112

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 61/301 (20%), Positives = 97/301 (32%), Gaps = 83/301 (27%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAK----DWPKNLEVQFRKKIDTLSK 355
           +   ++G      V +        E AV  + V        +  + L     K++D L K
Sbjct: 20  EPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRK 79

Query: 356 VN-HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRI 408
           V+ H N + L    E    F   +VF+    G LF+++     + E E   +   MR  +
Sbjct: 80  VSGHPNIIQLKDTYETNTFFF--LVFDLMKKGELFDYLTEKVTLSEKETRKI---MR-AL 133

Query: 409 AMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMA 458
              +       H+LN  I H      N L      L +D   KL+D   S        + 
Sbjct: 134 LEVICAL----HKLN--IVHRDLKPENIL------LDDDMNIKLTDFGFSCQLDPGEKLR 181

Query: 459 EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPY--LVDNGSLEDWAAD---Y--L 511
           E+  T   L  AP    E       ++   M      Y   VD      W+     Y  L
Sbjct: 182 EVCGTPSYL--AP----E-------IIECSMNDNHPGYGKEVDM-----WSTGVIMYTLL 223

Query: 512 SGVQPLQQFVDPTLS-----------SFDEEQLETLGE----LIKSCVRADPEKRPTMRD 556
           +G  P   F                  F   + +   +    L+   +   P+KR T  +
Sbjct: 224 AGSPP---FWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEE 280

Query: 557 I 557
            
Sbjct: 281 A 281

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 53/283 (18%), Positives = 100/283 (35%), Gaps = 61/283 (21%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
              N IG    G V         +  A   +     +D       +F+++I+ +  ++H 
Sbjct: 12  TLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVED-----VDRFKQEIEIMKSLDHP 66

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAMGMA 413
           N + L    E+       +V E    G LFE +      +ES+   +   M+  +   +A
Sbjct: 67  NIIRLYETFEDNTDIY--LVMELCTGGELFERVVHKRVFRESDAARI---MK-DVLSAVA 120

Query: 414 YCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAAT 463
           YC    H+LN  +AH      N+L  +    + D   KL D  L+  F     M     T
Sbjct: 121 YC----HKLN--VAHRDLKPENFLFLTD---SPDSPLKLIDFGLAARFKPGKMMRTKVGT 171

Query: 464 SKKLSSAP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ 518
              +  +P         E + ++ GV+++ ++ G  P+                    + 
Sbjct: 172 PYYV--SPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPT-------------DSEVM 216

Query: 519 QFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 557
             +     +F E+    +      LI+  +   P++R T    
Sbjct: 217 LKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQA 259

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 36/254 (14%), Positives = 78/254 (30%), Gaps = 47/254 (18%)

Query: 331 SVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLF 389
               + DWP +           + +++  +  N +G  +   P   + +  +      L 
Sbjct: 90  LKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLK 149

Query: 390 EHI-HIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD 448
           + +      E  + G+ L I + +A  +E +H     + H  L  S +  T D   K+ D
Sbjct: 150 DWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKG--LMHRDLKPSNIFFTMDDVVKVGD 207

Query: 449 --LSFWNEIAMAEMAATSKKLSSAPSAS------------LESNVYNF-------GVLLF 487
             L    +    E    +   + A                +  N Y+        G++LF
Sbjct: 208 FGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILF 267

Query: 488 EMV----TGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSC 543
           E++    T      +                  +    +        ++      +++  
Sbjct: 268 ELLYSFSTQMERVRI------------------ITDVRNLKFPLLFTQKYPQEHMMVQDM 309

Query: 544 VRADPEKRPTMRDI 557
           +   P +RP   DI
Sbjct: 310 LSPSPTERPEATDI 323

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 10/101 (9%)

Query: 5   CRNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
              +  L L       L P + +L  ++ +   +N+   +  +G   L  L+ L   +N 
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNR 519

Query: 61  FSG-PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 100
                    L     L +L L  N        E  + ++  
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLC---QEEGIQERLAE 557

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 5   CRNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
            RNL  L L       L+P    SL+ ++ + + +N+F  +    +  L  L+VLD+  N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 60  NFSGPLPNDL--GINHSLTILLLDNNDF 85
           +               SL  L L  NDF
Sbjct: 234 HIMT-SKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 32/132 (24%), Positives = 44/132 (33%), Gaps = 39/132 (29%)

Query: 6   RNLKDLCL-------EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 58
             L  L L       +G  +      T +K + L  N     +   F  LE+LE LDF H
Sbjct: 52  TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 110

Query: 59  NN---------FSGPLPN----DLGINH-------------SLTILLLDNNDFVGSLSPE 92
           +N         F   L N    D+   H             SL +L +  N F  +  P+
Sbjct: 111 SNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 93  I----YKLQVLS 100
           I      L  L 
Sbjct: 170 IFTELRNLTFLD 181

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 7   NLKDLCLEG-----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
           +L+ L + G        P+I   L ++  + L       + P  F  L  L+VL+  HNN
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210

Query: 61  FSGPLPNDLGINHSLTILLLDNNDFV----GSLSPEIYKLQVLS 100
           F           +SL +L    N  +      L      L  L+
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 41/276 (14%), Positives = 79/276 (28%), Gaps = 65/276 (23%)

Query: 190 DSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAI 249
           +             P  N+         +    S  ++  +                   
Sbjct: 16  NKERRRARREIRHLPNLNREQRRAFIRSLRDDPSQSANLLAEAKKL-------------- 61

Query: 250 LLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSS 309
                           +  +P  T             +P    ++      D  +VIG  
Sbjct: 62  ----------------NDAQPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDPKDVIGRG 105

Query: 310 PIGTVYKGT-LSNGVEIAVASVS---VASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNL 364
               V +    + G E AV  +       + +  + +    R++   L +V  H + + L
Sbjct: 106 VSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITL 165

Query: 365 IGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAMGMAYCLEH 418
           I   E        +VF+    G LF+++     + E E   +   MR  +   +++    
Sbjct: 166 IDSYESSSFMF--LVFDLMRKGELFDYLTEKVALSEKETRSI---MR-SLLEAVSFL--- 216

Query: 419 MHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD 448
            H  N  I H      N L      L ++   +LSD
Sbjct: 217 -HANN--IVHRDLKPENIL------LDDNMQIRLSD 243

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 54/271 (19%), Positives = 90/271 (33%), Gaps = 58/271 (21%)

Query: 306 IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 364
           IG    G V       +G ++AV  + +   +            ++  +    H N V +
Sbjct: 53  IGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQR-----RELLFNEVVIMRDYQHFNVVEM 107

Query: 365 IG-FCEEEEPFTRMMVFEYAPNGTL---FEHIHIKESEHLDWGMRLRIAMGMAYC---LE 417
              +   EE +  M   E+   G L      + + E +         IA         L 
Sbjct: 108 YKSYLVGEELWVLM---EFLQGGALTDIVSQVRLNEEQ---------IATVCEAVLQALA 155

Query: 418 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS-------- 469
           ++H     + H  + S ++ LT D   KLSD  F      A+++    K  S        
Sbjct: 156 YLHAQG--VIHRDIKSDSILLTLDGRVKLSDFGF-----CAQISKDVPKRKSLVGTPYWM 208

Query: 470 APSASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
           AP     S  Y         G+++ EMV G  PY     S     A       P  +  +
Sbjct: 209 APEVISRSL-YATEVDIWSLGIMVIEMVDGEPPYF----SDSPVQAMKRLRDSPPPKLKN 263

Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPT 553
               S        L + ++  +  DP++R T
Sbjct: 264 SHKVS------PVLRDFLERMLVRDPQERAT 288

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 59/271 (21%), Positives = 99/271 (36%), Gaps = 58/271 (21%)

Query: 306 IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 364
           IG    GTVY    ++ G E+A+  +++       K L +    +I  + +  + N VN 
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK--KELIIN---EILVMRENKNPNIVNY 82

Query: 365 IG-FCEEEEPFTRMMVFEYAPNGTLFEHIH---IKESEHLDWGMRLRIAMGMAYC---LE 417
           +  +   +E +  M   EY   G+L + +    + E +         IA     C   LE
Sbjct: 83  LDSYLVGDELWVVM---EYLAGGSLTDVVTETCMDEGQ---------IAAVCRECLQALE 130

Query: 418 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS-------- 469
            +H     + H  + S  + L  D + KL+D  F      A++     K S+        
Sbjct: 131 FLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGF-----CAQITPEQSKRSTMVGTPYWM 183

Query: 470 APSASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
           AP        Y         G++  EM+ G  PYL    +     A YL       +  +
Sbjct: 184 APEVVTRKA-YGPKVDIWSLGIMAIEMIEGEPPYL----NENPLRALYLIATNGTPELQN 238

Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPT 553
           P   S          + +  C+  D EKR +
Sbjct: 239 PEKLS------AIFRDFLNRCLEMDVEKRGS 263

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 35/170 (20%)

Query: 351 DTLSKVNHKNFVNLIG-FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIA 409
           D +S+++H  FV L   F ++E+ +       YA NG L ++I  K     +   R   A
Sbjct: 82  DVMSRLDHPFFVKLYFTFQDDEKLY---FGLSYAKNGELLKYIR-KIGSFDETCTRFYTA 137

Query: 410 -MGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA 462
            +  A  LE++H     I H      N L +  +H+      +++D      ++     A
Sbjct: 138 EIVSA--LEYLHGKG--IIHRDLKPENILLNEDMHI------QITDFGTAKVLSPESKQA 187

Query: 463 TSKKLSS-----APSASLESNVYN-------FGVLLFEMVTGRLPYLVDN 500
            +          +P   L              G +++++V G  P+   N
Sbjct: 188 RANSFVGTAQYVSPEL-LTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN 236

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 47/299 (15%), Positives = 101/299 (33%), Gaps = 51/299 (17%)

Query: 283 FVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKN 341
            +   P+ K+  +    +    V+G    G V +      G + A+  +          +
Sbjct: 14  VLFQGPEPKKYAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLY--------DS 65

Query: 342 LEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM--MVFEYAPNGTLFEHIHIKESE 398
            +   R+++D   +     + V ++   E      R   ++ E    G LF  I  +  +
Sbjct: 66  PKA--RQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQ 123

Query: 399 HLDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFW 452
                    I   +   ++ +H  N  IAH      N L +S     +D   KL+D  F 
Sbjct: 124 AFTEREAAEIMRDIGTAIQFLHSHN--IAHRDVKPENLLYTSK---EKDAVLKLTDFGFA 178

Query: 453 NEIAMAEMAATSKKLSSAPSAS---LESNVYN-------FGVLLFEMVTGRLPYLVDNGS 502
            E     +        +    +   L    Y+        GV+++ ++ G  P+      
Sbjct: 179 KETTQNAL---QTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPF------ 229

Query: 503 LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 557
              ++    +    +++ +      F   +   + E    LI+  ++ DP +R T+   
Sbjct: 230 ---YSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQF 285

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 36/165 (21%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
            F   +GS   G V+     S+G+E  + +++    KD  +    Q   +I+ L  ++H 
Sbjct: 25  IFKRKLGSGAFGDVHLVEERSSGLERVIKTIN----KDRSQVPMEQIEAEIEVLKSLDHP 80

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG----------MRLRIA 409
           N + +    E+       +V E    G L E I   ++                M+ ++ 
Sbjct: 81  NIIKIFEVFEDYHNMY--IVMETCEGGELLERIVSAQARG---KALSEGYVAELMK-QMM 134

Query: 410 MGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD 448
             +AY     H  +  + H      N L       +     K+ D
Sbjct: 135 NALAYF----HSQH--VVHKDLKPENILFQDT---SPHSPIKIID 170

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            +L +L L+G     +     + L ++  + L  NS S +          L  L   +N 
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 61  FSGPLPNDLGINHSLTILLLDNN 83
               +P  L  +  + ++ L NN
Sbjct: 252 LVK-VPGGLADHKYIQVVYLHNN 273

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 12/89 (13%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            NL  L L       +      +  H++ + L NN     +P G  + + ++V+   +NN
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274

Query: 61  FSG------PLPNDLGINHSLTILLLDNN 83
            S         P       S + + L +N
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 8   LKDLCLEGTLAPEIQSLTHIKSIILRNN---SFSGIIPEGFGELEELEVLDFGHNNFSGP 64
           L +  L   L P       ++ + LRN    + SG+         +L+ LD  HN+    
Sbjct: 186 LGERGLISALCP--LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD- 242

Query: 65  LPNDLGINH--SLTILLLDNNDFVGSLSPEIY-KLQVL 99
                  +    L  L L        +   +  KL VL
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVL 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 13/78 (16%), Positives = 19/78 (24%), Gaps = 5/78 (6%)

Query: 23  SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND----LGINHSLTIL 78
               +K + +          E       L  LD   N   G              +L +L
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 79  LLDNNDFVGSLSPEIYKL 96
            L N     + S     L
Sbjct: 207 ALRNAGM-ETPSGVCSAL 223

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 53/296 (17%), Positives = 95/296 (32%), Gaps = 95/296 (32%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKN-------LEVQFRKKIDTLSKV 356
           ++G    GTV+ G  L++ +++A+  +       W          LEV    K+      
Sbjct: 38  LLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGG- 96

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGT-LFEHI----HIKESE--HLDWGMRLRIA 409
            H   + L+ + E +E F  M+V E       LF++I     + E            ++ 
Sbjct: 97  -HPGVIRLLDWFETQEGF--MLVLERPLPAQDLFDYITEKGPLGEGPSRCF---FG-QVV 149

Query: 410 MGMAYCLEHMHQLNPPIAH-------------------------NYLNSSAVHL---TED 441
             + +C    H     + H                           L+         T  
Sbjct: 150 AAIQHC----HSRG--VVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRV 203

Query: 442 YAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG 501
           Y+               E    S+    A  A     V++ G+LL++MV G +P+     
Sbjct: 204 YSP-------------PEW--ISRHQYHALPA----TVWSLGILLYDMVCGDIPF----- 239

Query: 502 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
              +   + L       +   P   S D         LI+ C+   P  RP++ +I
Sbjct: 240 ---ERDQEILEA-----ELHFPAHVSPDCCA------LIRRCLAPKPSSRPSLEEI 281

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 8/89 (8%)

Query: 1   MCVMCRNLKDLCLEGTLAPEI---QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG 57
           +     NL+ L L       +     L  +K + L  N   G +     +L  L  L+  
Sbjct: 44  LTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 58  HNNFSGPLPND---LGINHSLTILLLDNN 83
            N       +    L     L  L L N 
Sbjct: 104 GNKLKD--ISTLEPLKKLECLKSLDLFNC 130

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 16/98 (16%)

Query: 7   NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
           ++  L +      +L      L    ++ +  N  +  +P     L EL +      +  
Sbjct: 62  HITTLVIPDNNLTSLPALPPELR---TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP 117

Query: 63  GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 100
                       L  L +  N    SL      LQ LS
Sbjct: 118 ALPSG-------LCKLWIFGNQL-TSLPVLPPGLQELS 147

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 16/98 (16%)

Query: 7   NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 62
            L  L        +L      L     + + +N  +  +P    EL +L      +N  +
Sbjct: 162 ELCKLWAYNNQLTSLPMLPSGLQ---ELSVSDNQLA-SLPTLPSELYKLWAY---NNRLT 214

Query: 63  GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 100
             LP        L  L++  N    SL     +L+ L 
Sbjct: 215 -SLPALPS---GLKELIVSGNRL-TSLPVLPSELKELM 247

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 15/111 (13%)

Query: 5   CRNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
              LK+L + G    +L      L     +++  N  +  +P        L  L    N 
Sbjct: 220 PSGLKELIVSGNRLTSLPVLPSELK---ELMVSGNRLT-SLPM---LPSGLLSLSVYRNQ 272

Query: 61  FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 111
            +  LP  L    S T + L+ N         +  L+ ++ +    G +  
Sbjct: 273 LTR-LPESLIHLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPIIR 319

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 54/291 (18%), Positives = 111/291 (38%), Gaps = 61/291 (20%)

Query: 300 EDFSN--VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 356
           +D+    VIGS     V          ++A+  +++   +    +++ +  K+I  +S+ 
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQT---SMD-ELLKEIQAMSQC 70

Query: 357 NHKNFVNLIG-FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR---IAMGM 412
           +H N V+    F  ++E +  M   +    G++ + I    ++       L    IA  +
Sbjct: 71  HHPNIVSYYTSFVVKDELWLVM---KLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATIL 127

Query: 413 AYC---LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS 469
                 LE++H+      H  + +  + L ED + +++D      +A       +K   +
Sbjct: 128 REVLEGLEYLHKNG--QIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKT 185

Query: 470 --------APSASLESNVYN-------FGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV 514
                   AP    +   Y+       FG+   E+ TG  PY                  
Sbjct: 186 FVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPY---------------HKY 230

Query: 515 QPLQ------QFVDPTLSSFDEEQLE------TLGELIKSCVRADPEKRPT 553
            P++      Q   P+L +  +++        +  ++I  C++ DPEKRPT
Sbjct: 231 PPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPT 281

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 2/89 (2%)

Query: 19  PEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGPLPNDLGINHSLTI 77
             +    ++  + + N      +       L EL  L    +      P+       L+ 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 78  LLLDNNDFVGSLSPEIYKLQVLSESQVDE 106
           L L  N    SLS +  +   L E  +  
Sbjct: 85  LNLSFNALE-SLSWKTVQGLSLQELVLSG 112

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
             L +L L G     + P   Q L H++ + +  +    I    F  L+ L  ++  HNN
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266

Query: 61  FSGPLPNDLGINHSLTILLLDNN 83
            +    +     H L  + L +N
Sbjct: 267 LTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 5   CRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 61
             NL+ L L        P +  L  +  + L  N  S I P  F  L  L+ L    +  
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 62  SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 100
                N      SL  + L +N+    L  +++     L+ + 
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 6/84 (7%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            NL  L L      T+       L+ +K + LRNN    I    F  +  L  LD G   
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171

Query: 61  FSGPLPNDLGIN-HSLTILLLDNN 83
               +         +L  L L   
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMC 195

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
             L +L L+      +  E     + +  + L +N    I       L  L  L   +N 
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

Query: 61  FSGPLPNDLGINHSLTILLLDNN 83
            S  +P  L     L ++ L  N
Sbjct: 253 LSR-VPAGLPDLKLLQVVYLHTN 274

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 16/92 (17%)

Query: 5   CRNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
              L  L L       +       L  ++ + L NN  S  +P G  +L+ L+V+    N
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274

Query: 60  N--------FSGPLPNDLGINHSLTILLLDNN 83
           N        F                + L NN
Sbjct: 275 NITKVGVNDFCPVGFGVK--RAYYNGISLFNN 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 6   RNLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
             L++L + G     + P     L+ +K + + N+  S I    F  L  L  L+  HNN
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277

Query: 61  FSGPLPNDLGINHSLTILLLDNN 83
            S    +       L  L L +N
Sbjct: 278 LSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 7   NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 63
           NLK L L        P +  L  ++ + +  N F  I P  F  L  L+ L   ++  S 
Sbjct: 197 NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 64  PLPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 100
              N      SL  L L +N+   SL  +++     L  L 
Sbjct: 257 IERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 6/84 (7%)

Query: 6   RNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
            +L  L L       +     + L+ ++ + LRNN    I    F  +  L  LD G   
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182

Query: 61  FSGPLPNDLGIN-HSLTILLLDNN 83
               +         +L  L L   
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMC 206

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 25/183 (13%)

Query: 276 SGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVAS 334
             Q  +  V    ++K++ +    +  S V+G    G V +        + A+  +    
Sbjct: 40  PQQFPQFHVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQ--- 96

Query: 335 AKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM--MVFEYAPNGTLFEH 391
             D PK      R++++   +     + V ++   E      +   +V E    G LF  
Sbjct: 97  --DCPK-----ARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSR 149

Query: 392 IHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAK 445
           I  +  +         I   +   ++++H +N  IAH      N L +S      +   K
Sbjct: 150 IQDRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYTSK---RPNAILK 204

Query: 446 LSD 448
           L+D
Sbjct: 205 LTD 207

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 48/252 (19%), Positives = 77/252 (30%), Gaps = 70/252 (27%)

Query: 340 KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE--EEPFTRMMVFEYAPNGTLFEHI----H 393
             ++   +++I     + H N V       E    P    ++ EYA  G L+E I     
Sbjct: 57  AAIDENVQREIINHRSLRHPNIVRFK----EVILTPTHLAIIMEYASGGELYERICNAGR 112

Query: 394 IKESEHLDWGMRL--RIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAA- 444
             E E          ++  G++YC  H  Q    I H      N L      L    A  
Sbjct: 113 FSEDE----ARFFFQQLLSGVSYC--HSMQ----ICHRDLKLENTL------LDGSPAPR 156

Query: 445 -KLSDLSFWNEIAMAEMAAT-------------SKKLSSAPSA---SLESNVYNFGVLLF 487
            K+ D  +     +     +              ++      A   S        GV L+
Sbjct: 157 LKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSC-------GVTLY 209

Query: 488 EMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ--QFVDPTLSSFDEEQLETLGELIKSCVR 545
            M+ G  P+            DY   +Q +   ++  P       E       LI     
Sbjct: 210 VMLVGAYPFEDPEEP-----RDYRKTIQRILSVKYSIPDDIRISPE----CCHLISRIFV 260

Query: 546 ADPEKRPTMRDI 557
           ADP  R ++ +I
Sbjct: 261 ADPATRISIPEI 272

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 18/101 (17%), Positives = 26/101 (25%), Gaps = 8/101 (7%)

Query: 6   RNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 65
           +N                ++    +   NN  +  + E  G L ELE L    N     L
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-L 363

Query: 66  PNDLGINH---SLTILLLDNNDFVGSLSPEIY----KLQVL 99
                +     SL  L +  N                L  L
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 23  SLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 81
            +  ++ + +  NS S    +G     + L  L+   N  +  +   L     + +L L 
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH 429

Query: 82  NNDFVGSLSPEIYKLQVLSESQVDEGQLSS 111
           +N    S+  ++ KL+ L E  V   QL S
Sbjct: 430 SNKIK-SIPKQVVKLEALQELNVASNQLKS 458

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 18/131 (13%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
           +  + +G      VY+          A+  +     K      +   R +I  L +++H 
Sbjct: 56  EVESELGRGATSIVYRCKQKGTQKPYALKVLK----K---TVDKKIVRTEIGVLLRLSHP 108

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLE 417
           N + L    E     +  +V E    G LF+ I  K   SE        +I   +AY   
Sbjct: 109 NIIKLKEIFETPTEIS--LVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYL-- 164

Query: 418 HMHQLNPPIAH 428
             H+    I H
Sbjct: 165 --HENG--IVH 171

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 5   CRNLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
             NL  L L G    ++     + L  +  ++L  N  + + P  F +L  L  L    N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 60  NFSGPLPND-LGINHSLTILLLDNN 83
           N S  LP + L    +L  L L++N
Sbjct: 212 NLSA-LPTEALAPLRALQYLRLNDN 235

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 39/311 (12%), Positives = 93/311 (29%), Gaps = 83/311 (26%)

Query: 307 GSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 365
           G   + TV        G  + V  +++ +  +  + +    + ++      NH N V   
Sbjct: 36  GFEDLMTVNLARYKPTGEYVTVRRINLEACSN--EMVT-FLQGELHVSKLFNHPNIVPYR 92

Query: 366 G-FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYC------LEH 418
             F  + E +   +V  +   G+  + I     + ++    L IA            L++
Sbjct: 93  ATFIADNELW---VVTSFMAYGSAKDLICTHFMDGMN---ELAIA---YILQGVLKALDY 143

Query: 419 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLE-- 476
           +H +     H  + +S + ++ D    LS L          M +  ++            
Sbjct: 144 IHHMG--YVHRSVKASHILISVDGKVYLSGLRS-----NLSMISHGQRQRVVHDFPKYSV 196

Query: 477 ---------------------SNVYNFGVLLFEMVTGRLPY------------------- 496
                                S++Y+ G+   E+  G +P+                   
Sbjct: 197 KVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPC 256

Query: 497 LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLG--------------ELIKS 542
           L+D  ++                 +  +L++                          ++ 
Sbjct: 257 LLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQ 316

Query: 543 CVRADPEKRPT 553
           C++ +P+ RP+
Sbjct: 317 CLQRNPDARPS 327

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 25  THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN-HSLTILLLDNN 83
            H+  + L  NS + +    F  L++L+ L          + N+      SL IL LD N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 84  DFVGSLSPEI----YKLQVLS 100
            F+  L          L+VL+
Sbjct: 90  QFL-QLETGAFNGLANLEVLT 109

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 29/136 (21%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK-VNH 358
           +    IG        +    +  +E AV  +         K+      ++I+ L +   H
Sbjct: 25  EVKEDIGVGSYSVCKRCIHKATNMEFAVKIID--------KSKR-DPTEEIEILLRYGQH 75

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SE----HLDWGMRLRIAMGM 412
            N + L    ++ +     +V E    G L + I  ++  SE     +   +   I   +
Sbjct: 76  PNIITLKDVYDDGKYVY--VVTELMKGGELLDKILRQKFFSEREASAV---LF-TITKTV 129

Query: 413 AYCLEHMHQLNPPIAH 428
            Y     H     + H
Sbjct: 130 EYL----HAQG--VVH 139

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 12/96 (12%)

Query: 16  TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSL 75
           +L  E   +     + L   + S  +P+      ++ VL+   N     LP       SL
Sbjct: 51  SLLKECL-INQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPA---SL 102

Query: 76  TILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 111
             L   +N    +L      L+ L    VD  QL+ 
Sbjct: 103 EYLDACDNRLS-TLPELPASLKHL---DVDNNQLTM 134

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 19/136 (13%), Positives = 35/136 (25%), Gaps = 16/136 (11%)

Query: 6   RNLKDLCLEG----TLAPEIQSLTHIKSII----LRNNSFSGIIPEGFGELEELEVLDFG 57
            +L+ L +      +L        H +        R N  + I PE    L+    +   
Sbjct: 180 ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILE 238

Query: 58  HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ 117
            N  S  +   L    +          F  S+S           +           +   
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFPENKQS-- 294

Query: 118 SCYERSIKWNGVLDED 133
              + S  W+    E+
Sbjct: 295 ---DVSQIWHAFEHEE 307

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	592
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.97
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.91
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.89
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.83
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.55
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.54
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.53
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.53
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.49
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.47
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.47
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.47
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.46
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.46
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.44
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.43
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.43
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.42
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.41
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.4
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.4
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.39
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.39
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.39
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.38
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.38
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.38
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.37
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.37
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.36
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.36
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.35
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.34
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.34
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.33
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.31
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.31
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.31
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.3
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.3
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.3
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.3
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.3
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.29
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.23
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.23
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.22
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.21
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.2
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.19
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.16
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.06
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.02
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.01
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.0
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.0
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.99
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.98
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.97
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.96
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.95
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.95
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.94
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.7
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.65
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.61
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.6
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.56
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.54
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.49
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.41
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.28
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.23
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.18
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.15
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.07
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.04
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.67
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.62
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.59
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.54
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.48
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.34
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.15
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.06
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.9
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	96.69
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	96.42
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	96.33
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	96.19
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.19
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	96.12
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	96.12
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	96.06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.95
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.86
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.85
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	95.66
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	94.92
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	94.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.93
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	91.8
3mes_A	424	Choline kinase; malaria, structural genomics, stru	90.89
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	90.75
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	90.41
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	88.58
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	88.38
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	87.22
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	86.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	85.69
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	85.11
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	84.29
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	83.49
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	81.39

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.2e-53  Score=430.39  Aligned_cols=253  Identities=23%  Similarity=0.382  Sum_probs=202.2

Q ss_pred             HHHHHHhhhhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEE
Q 007711          294 ELEAACEDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGF  367 (592)
Q Consensus       294 el~~~~~~~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~  367 (592)
                      |+...+..|.+.||+|+||+||+|++.      +++.||||.+.....    ....++|.+|+.+|++++|||||+++|+
T Consensus        22 ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~----~~~~~~f~~E~~il~~l~HpNIV~l~g~   97 (308)
T 4gt4_A           22 EISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAE----GPLREEFRHEAMLRARLQHPNVVCLLGV   97 (308)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CC----C-CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cCCHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccC----hHHHHHHHHHHHHHHhCCCCCCCCcceE
Confidence            344445567789999999999999973      467899999864332    2345789999999999999999999999


Q ss_pred             EecCCCcceEEEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCC
Q 007711          368 CEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNS  433 (592)
Q Consensus       368 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~  433 (592)
                      |.+.+  ..+||||||++|+|.++|+...              ...++|..+++|+.|||.||+|||+++  ||||||||
T Consensus        98 ~~~~~--~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~--iiHRDLK~  173 (308)
T 4gt4_A           98 VTKDQ--PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH--VVHKDLAT  173 (308)
T ss_dssp             ECSSS--SCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSG
T ss_pred             EEECC--EEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC--CCCCCccc
Confidence            99877  5699999999999999996431              246899999999999999999999998  99999999


Q ss_pred             CCeEEcCCCceEEecCCcchhhhhhhhhh-----cccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCC
Q 007711          434 SAVHLTEDYAAKLSDLSFWNEIAMAEMAA-----TSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNG  501 (592)
Q Consensus       434 ~NiLl~~~~~~ki~DfGla~~~~~~~~~~-----~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~  501 (592)
                      +||||++++++||+|||+++.........     ..+..|++||      ++.++|||||||+||||+| |+.||.  +.
T Consensus       174 ~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~--~~  251 (308)
T 4gt4_A          174 RNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYC--GY  251 (308)
T ss_dssp             GGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT--TC
T ss_pred             cceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCC--CC
Confidence            99999999999999999998765432211     1123455555      7999999999999999999 899994  33


Q ss_pred             ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          502 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      ...+.......+.          ....++.++..+.++|.+||+.||++||||.||++.|+.+.+
T Consensus       252 ~~~~~~~~i~~~~----------~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~n  306 (308)
T 4gt4_A          252 SNQDVVEMIRNRQ----------VLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWGN  306 (308)
T ss_dssp             CHHHHHHHHHTTC----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCC
T ss_pred             CHHHHHHHHHcCC----------CCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhccC
Confidence            4445444443321          112344566789999999999999999999999999997654

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-52  Score=420.11  Aligned_cols=249  Identities=26%  Similarity=0.424  Sum_probs=195.5

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||+||+|++++  .||||+++...   ......++|.+|+++|++++|||||+++|+|.++   ..+|||
T Consensus        39 ~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~---~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~---~~~iVm  110 (307)
T 3omv_A           39 MLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVD---PTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKD---NLAIVT  110 (307)
T ss_dssp             CEEEECCCCSSSEEEEEESSS--EEEEEECCCSS---CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS---SCEEEE
T ss_pred             EEeeEEeeCCCcEEEEEEECC--cEEEEEEEecC---CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECC---eEEEEE
Confidence            456889999999999999754  58999876432   2234567899999999999999999999998754   358999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      |||++|+|.++++.. ...++|..+++|+.|||.||+|||+.+  ||||||||+||||++++++||+|||+|+.......
T Consensus       111 Ey~~gGsL~~~l~~~-~~~l~~~~~~~i~~qia~gL~yLH~~~--IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~  187 (307)
T 3omv_A          111 QWCEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLHAKN--IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG  187 (307)
T ss_dssp             ECCSSCBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHHHTT--CBCSCCCSSSEEEETTEEEEECCCSSCBC------
T ss_pred             EcCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--ccCCccCHHHEEECCCCcEEEeeccCceecccCCc
Confidence            999999999999743 356999999999999999999999988  99999999999999999999999999986542211


Q ss_pred             -----hhcccccCCCCC---------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          461 -----AATSKKLSSAPS---------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       461 -----~~~~~~~~~~~~---------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                           ....+..|++||         ++.++|||||||+||||+||+.||....  ....+.......     ...|...
T Consensus       188 ~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~--~~~~~~~~~~~~-----~~~p~~~  260 (307)
T 3omv_A          188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHIN--NRDQIIFMVGRG-----YASPDLS  260 (307)
T ss_dssp             ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC--CHHHHHHHHHTT-----CCCCCST
T ss_pred             ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCC--hHHHHHHHHhcC-----CCCCCcc
Confidence                 112234455554         6789999999999999999999995322  222232322221     1223333


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ..+..++..+.+++.+||+.||++||||.||++.|+.+...
T Consensus       261 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~  301 (307)
T 3omv_A          261 KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS  301 (307)
T ss_dssp             TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred             cccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcc
Confidence            44556677899999999999999999999999999988543

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=1.7e-52  Score=420.11  Aligned_cols=248  Identities=21%  Similarity=0.368  Sum_probs=200.8

Q ss_pred             hhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          302 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.||+|+||+||+|++.      ++..||||++....     ....++|.+|+++|++++|||||+++|+|.+.+  .
T Consensus        17 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~-----~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~--~   89 (299)
T 4asz_A           17 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS-----DNARKDFHREAELLTNLQHEHIVKFYGVCVEGD--P   89 (299)
T ss_dssp             EEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCC-----HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--S
T ss_pred             EeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCC-----hHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC--E
Confidence            5688999999999999874      47789999885322     345678999999999999999999999999877  6


Q ss_pred             eEEEEeeCCCCCchhhcccc-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCce
Q 007711          376 RMMVFEYAPNGTLFEHIHIK-----------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAA  444 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~-----------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~  444 (592)
                      .+||||||++|+|.++|+..           ....++|.++++|+.|||.||+|||+++  |+||||||+|||+++++.+
T Consensus        90 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~--iiHRDlKp~NILl~~~~~~  167 (299)
T 4asz_A           90 LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH--FVHRDLATRNCLVGENLLV  167 (299)
T ss_dssp             EEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECGGGCE
T ss_pred             EEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCccCHhhEEECCCCcE
Confidence            79999999999999999642           2357999999999999999999999998  9999999999999999999


Q ss_pred             EEecCCcchhhhhhhhhh-----cccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhc
Q 007711          445 KLSDLSFWNEIAMAEMAA-----TSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLS  512 (592)
Q Consensus       445 ki~DfGla~~~~~~~~~~-----~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~  512 (592)
                      ||+|||+++.........     ..+..|++||      ++.|+|||||||++|||+| |+.||.  +.+..+.......
T Consensus       168 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~--~~~~~~~~~~i~~  245 (299)
T 4asz_A          168 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWY--QLSNNEVIECITQ  245 (299)
T ss_dssp             EECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT--TSCHHHHHHHHHH
T ss_pred             EECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHc
Confidence            999999998764332111     1223455554      7999999999999999999 999994  3344555544443


Q ss_pred             CCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCC
Q 007711          513 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  570 (592)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~  570 (592)
                      +..          ...+..++.++.+++.+||+.||++||||+||++.|+++.+.+|.
T Consensus       246 ~~~----------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p~  293 (299)
T 4asz_A          246 GRV----------LQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASPV  293 (299)
T ss_dssp             TCC----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCC
T ss_pred             CCC----------CCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCCc
Confidence            321          122445567899999999999999999999999999999876654

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=5e-52  Score=422.40  Aligned_cols=248  Identities=21%  Similarity=0.369  Sum_probs=195.7

Q ss_pred             hhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          302 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.||+|+||+||+|+++      ++..||||++....     ....++|.+|+++|++++|||||+++|+|.+.+  .
T Consensus        45 l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~-----~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~--~  117 (329)
T 4aoj_A           45 LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS-----ESARQDFQREAELLTMLQHQHIVRFFGVCTEGR--P  117 (329)
T ss_dssp             EEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCS-----HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--S
T ss_pred             EEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCC-----HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--E
Confidence            4578999999999999975      47889999885322     345678999999999999999999999999877  6


Q ss_pred             eEEEEeeCCCCCchhhccccC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC
Q 007711          376 RMMVFEYAPNGTLFEHIHIKE-------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY  442 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~-------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~  442 (592)
                      .+||||||++|+|.++++...             ...++|.++++|+.|||.||+|||+++  |+||||||+||||++++
T Consensus       118 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~--iiHRDLKp~NILl~~~~  195 (329)
T 4aoj_A          118 LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH--FVHRDLATRNCLVGQGL  195 (329)
T ss_dssp             EEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEETTT
T ss_pred             EEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCC--eecccccHhhEEECCCC
Confidence            799999999999999986432             246999999999999999999999998  99999999999999999


Q ss_pred             ceEEecCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHH
Q 007711          443 AAKLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADY  510 (592)
Q Consensus       443 ~~ki~DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~  510 (592)
                      .+||+|||+++......           ..+.+||......++.++|||||||+||||+| |+.||.  +....+.....
T Consensus       196 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~--~~~~~~~~~~i  273 (329)
T 4aoj_A          196 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWY--QLSNTEAIDCI  273 (329)
T ss_dssp             EEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTC--SSCHHHHHHHH
T ss_pred             cEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCC--CCCHHHHHHHH
Confidence            99999999998764322           12333343344458999999999999999999 999994  33444444444


Q ss_pred             hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCC
Q 007711          511 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  570 (592)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~  570 (592)
                      ..+..          ...+..++.++.+++.+||+.||++||||+||++.|+.+.+.+|.
T Consensus       274 ~~g~~----------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~pp~  323 (329)
T 4aoj_A          274 TQGRE----------LERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPV  323 (329)
T ss_dssp             HHTCC----------CCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSCC-
T ss_pred             HcCCC----------CCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCCcc
Confidence            33311          122344567899999999999999999999999999999876543

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=2.9e-50  Score=412.73  Aligned_cols=258  Identities=19%  Similarity=0.285  Sum_probs=199.6

Q ss_pred             HHHHHHHhhhhcccCcCCCeEEEEEEeCC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCC-Cceeeee
Q 007711          293 SELEAACEDFSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-KNFVNLI  365 (592)
Q Consensus       293 ~el~~~~~~~~~~lG~G~~g~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H-~niv~l~  365 (592)
                      +|+......+.+.||+|+||+||+|++..      ++.||||.+....    .....++|.+|+++|.+++| ||||+++
T Consensus        59 wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~----~~~~~~~~~~E~~il~~l~hhpnIV~l~  134 (353)
T 4ase_A           59 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA----THSEHRALMSELKILIHIGHHLNVVNLL  134 (353)
T ss_dssp             HBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEcccc----ChHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            34444455567999999999999998643      3578898875332    23345789999999999965 8999999


Q ss_pred             EEEecCCCcceEEEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCc
Q 007711          366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL  431 (592)
Q Consensus       366 g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dL  431 (592)
                      |+|.+.+. ..+||||||++|+|.++|+...              ...++|..++.|+.|||+||+|||+++  ||||||
T Consensus       135 g~~~~~~~-~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~--iiHRDL  211 (353)
T 4ase_A          135 GACTKPGG-PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDL  211 (353)
T ss_dssp             EEECCTTS-CCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT--CCCSCC
T ss_pred             EEEEecCC-EEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCC--eecCcc
Confidence            99976532 4689999999999999997431              245899999999999999999999998  999999


Q ss_pred             CCCCeEEcCCCceEEecCCcchhhhhhhhh-----hcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCC
Q 007711          432 NSSAVHLTEDYAAKLSDLSFWNEIAMAEMA-----ATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVD  499 (592)
Q Consensus       432 k~~NiLl~~~~~~ki~DfGla~~~~~~~~~-----~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~  499 (592)
                      ||+|||+++++.+||+|||+|+........     ...+..|++||      ++.++|||||||+||||+| |+.||...
T Consensus       212 K~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~  291 (353)
T 4ase_A          212 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  291 (353)
T ss_dssp             SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             CccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999876432211     11223455655      7999999999999999999 99999543


Q ss_pred             CCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          500 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      ..  .+.+...+.....         ...++.++.++.++|.+||+.||++||||.||++.|+++++..
T Consensus       292 ~~--~~~~~~~i~~g~~---------~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~  349 (353)
T 4ase_A          292 KI--DEEFCRRLKEGTR---------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  349 (353)
T ss_dssp             CC--SHHHHHHHHHTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             CH--HHHHHHHHHcCCC---------CCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHh
Confidence            22  2222222222111         1123345567999999999999999999999999999997654

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=1.2e-48  Score=394.47  Aligned_cols=250  Identities=20%  Similarity=0.290  Sum_probs=188.4

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC--cceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP--FTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~--~~~~lv  379 (592)
                      +.+.||+|+||+||+|++ +|+.||||++....      .....+..|+..+.+++|||||+++|+|.+.+.  ...+||
T Consensus         7 L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~------~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV   79 (303)
T 3hmm_A            7 LQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE------ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV   79 (303)
T ss_dssp             EEEEEEECSSSEEEEEEE-TTEEEEEEEECGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc------hhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEE
Confidence            457899999999999998 58999999885322      112233456666778999999999999986542  246899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC------CCCeEeeCcCCCCeEEcCCCceEEecCCcch
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL------NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  453 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~------~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~  453 (592)
                      ||||++|+|.++++.   ..++|..+.+|+.|++.||+|||+.      .++|+||||||+|||||+++++||+|||+++
T Consensus        80 ~Ey~~~gsL~~~l~~---~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~  156 (303)
T 3hmm_A           80 SDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV  156 (303)
T ss_dssp             EECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             ecCCCCCcHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCc
Confidence            999999999999974   3589999999999999999999976      3459999999999999999999999999998


Q ss_pred             hhhhhhh-------hhcccccCCCCC------------CCCCCcchhhHHHHHHHHhCCCcccCCC-------------C
Q 007711          454 EIAMAEM-------AATSKKLSSAPS------------ASLESNVYNFGVLLFEMVTGRLPYLVDN-------------G  501 (592)
Q Consensus       454 ~~~~~~~-------~~~~~~~~~~~~------------~s~ksDVwSfGvvl~El~tG~~P~~~~~-------------~  501 (592)
                      .......       ....+..|++||            ++.++|||||||+||||+||+.||....             .
T Consensus       157 ~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~  236 (303)
T 3hmm_A          157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP  236 (303)
T ss_dssp             EEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred             cccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccc
Confidence            6543221       111234555655            4568999999999999999988763211             1


Q ss_pred             ChHHHHHHHhcCCCCCccccCCCCCC--CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          502 SLEDWAADYLSGVQPLQQFVDPTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ...++......+      ..+|.++.  ...+++..+.+++.+||+.||++||||.||++.|+++.+.
T Consensus       237 ~~~~~~~~~~~~------~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          237 SVEEMRKVVCEQ------KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             CHHHHHHHHTTS------CCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHhcc------cCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence            122222222111      12232221  1235667899999999999999999999999999998754

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=5.7e-48  Score=392.82  Aligned_cols=240  Identities=20%  Similarity=0.339  Sum_probs=190.4

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||+||+|+. .+|+.||||++......   ....+.|.+|+++|++++|||||++++++.+.+  ..|||
T Consensus        27 ~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~---~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~--~~yiV  101 (350)
T 4b9d_A           27 VRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMS---SKEREESRREVAVLANMKHPNIVQYRESFEENG--SLYIV  101 (350)
T ss_dssp             EEEEEC------CEEEEEETTTCCEEEEEEEECTTSC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             EEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCC---HHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECC--EEEEE
Confidence            3457899999999999996 46899999998754322   344678999999999999999999999999877  78999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      ||||++|+|.+++.......+++.....|+.||+.||+|||+++  |+||||||+||||++++.+||+|||+|+......
T Consensus       102 mEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~  179 (350)
T 4b9d_A          102 MDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK--ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV  179 (350)
T ss_dssp             EECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred             EeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCCHHHEEECCCCCEEEcccccceeecCCc
Confidence            99999999999997666667899999999999999999999999  9999999999999999999999999998764322


Q ss_pred             h---hhcccccCCCC------CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 M---AATSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 ~---~~~~~~~~~~~------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                      .   ....+..|++|      .|+.++|||||||++|||+||+.||.  ..+..+....+..+...          ..+.
T Consensus       180 ~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~--~~~~~~~~~~i~~~~~~----------~~~~  247 (350)
T 4b9d_A          180 ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFE--AGSMKNLVLKIISGSFP----------PVSL  247 (350)
T ss_dssp             HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC--CSSHHHHHHHHHHTCCC----------CCCT
T ss_pred             ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCC--CcCHHHHHHHHHcCCCC----------CCCc
Confidence            1   11123344444      48899999999999999999999994  44555555555544211          1122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+.++.+++.+||+.||++|||++|+++
T Consensus       248 ~~s~~~~~li~~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          248 HYSYDLRSLVSQLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             cCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            34457899999999999999999999975

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=7.3e-48  Score=383.75  Aligned_cols=243  Identities=24%  Similarity=0.349  Sum_probs=188.1

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecC--CCcceEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE--EPFTRMM  378 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~~~l  378 (592)
                      |.+.||+|+||.||+|... ++..||+|.+.....   .....+.|.+|+++|++++|||||++++++...  .....+|
T Consensus        30 ~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~---~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~l  106 (290)
T 3fpq_A           30 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL---TKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEE
Confidence            4567999999999999964 588999999865432   234467899999999999999999999998642  2124689


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC-CCceEEecCCcchhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~-~~~~ki~DfGla~~~~~  457 (592)
                      |||||++|+|.++++.  ...+++.....|+.||+.||+|||+++++|+||||||+||||+. ++.+||+|||+|+....
T Consensus       107 vmEy~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~  184 (290)
T 3fpq_A          107 VTELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  184 (290)
T ss_dssp             EEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             EEeCCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC
Confidence            9999999999999974  35689999999999999999999999888999999999999984 79999999999986532


Q ss_pred             hhh-hhcccccCCCCC-----CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          458 AEM-AATSKKLSSAPS-----ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       458 ~~~-~~~~~~~~~~~~-----~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                      ... ....+..|++||     ++.++|||||||++|||+||+.||... ............+..+.         .++..
T Consensus       185 ~~~~~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~~-~~~~~~~~~i~~~~~~~---------~~~~~  254 (290)
T 3fpq_A          185 SFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSEC-QNAAQIYRRVTSGVKPA---------SFDKV  254 (290)
T ss_dssp             TSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTC-SSHHHHHHHHTTTCCCG---------GGGGC
T ss_pred             CccCCcccCccccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC-CcHHHHHHHHHcCCCCC---------CCCcc
Confidence            211 111223445554     789999999999999999999999532 23333333333221110         11122


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+.++.+++.+||+.||++|||++|+++
T Consensus       255 ~~~~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          255 AIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             CCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            2346889999999999999999999874

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.2e-47  Score=388.67  Aligned_cols=247  Identities=15%  Similarity=0.147  Sum_probs=193.5

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.++||+|+||.||+|+.. +|..||||++.....          +.+|+.+|++++|||||++++++.+.+  ..+|||
T Consensus        62 ~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~----------~~~E~~il~~l~HpnIV~l~~~~~~~~--~~~ivm  129 (336)
T 4g3f_A           62 HQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF----------RVEELVACAGLSSPRIVPLYGAVREGP--WVNIFM  129 (336)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----------CTHHHHTTTTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             eCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh----------HHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEEE
Confidence            3478999999999999964 689999999864321          246999999999999999999998877  789999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC-ceEEecCCcchhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~-~~ki~DfGla~~~~~~-  458 (592)
                      |||++|+|.++++..  ..+++.....|+.||+.||+|||+++  |+||||||+||||+.++ .+||+|||+|+.+... 
T Consensus       130 Ey~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~  205 (336)
T 4g3f_A          130 ELLEGGSLGQLIKQM--GCLPEDRALYYLGQALEGLEYLHTRR--ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG  205 (336)
T ss_dssp             CCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTT--EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred             eccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCC
Confidence            999999999999743  46999999999999999999999999  99999999999999987 6999999999876422 


Q ss_pred             -------------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          459 -------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       459 -------------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                                   +..+.+||......++.++|||||||++|||+||+.||......  +....+..+....        
T Consensus       206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~--~~~~~i~~~~~~~--------  275 (336)
T 4g3f_A          206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRG--PLCLKIASEPPPI--------  275 (336)
T ss_dssp             --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCS--CCHHHHHHSCCGG--------
T ss_pred             cccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH--HHHHHHHcCCCCc--------
Confidence                         12233334333444899999999999999999999999643321  1122222221111        


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCCCC
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIP  574 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~~p  574 (592)
                      ...+..++..+.+++.+||+.||++|||+.|+++.|...+.....-..|
T Consensus       276 ~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hP  324 (336)
T 4g3f_A          276 REIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSP  324 (336)
T ss_dssp             GGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSC
T ss_pred             hhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhhhccCC
Confidence            1223344567999999999999999999999999998887554443344

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=7.2e-47  Score=384.09  Aligned_cols=237  Identities=19%  Similarity=0.277  Sum_probs=190.6

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||+|+||+||+|+.. +|+.||||++.......     .+.+.+|+++|++++|||||++++++.+.+  ..|||
T Consensus        77 ~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~-----~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~--~~~iv  149 (346)
T 4fih_A           77 DNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR-----RELLFNEVVIMRDYQHENVVEMYNSYLVGD--ELWVV  149 (346)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSS-----GGGGHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             EEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhH-----HHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEE
Confidence            34578999999999999964 68999999987554332     345889999999999999999999999887  78999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      ||||++|+|.+++..   ..+++.....|+.||+.||+|||+++  |+||||||+||||+.++.+||+|||+++.+... 
T Consensus       150 mEy~~gg~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~  224 (346)
T 4fih_A          150 MEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQG--VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV  224 (346)
T ss_dssp             ECCCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTCCEEECCCTTCEECCSSS
T ss_pred             EeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC--cccccCCHHHEEECCCCCEEEecCcCceecCCCC
Confidence            999999999999863   35899999999999999999999999  999999999999999999999999999876422 


Q ss_pred             --------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          459 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       459 --------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                              +..+.+||......|+.++|||||||++|||+||+.||..  .+..+..........       +.. ....
T Consensus       225 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~--~~~~~~~~~i~~~~~-------~~~-~~~~  294 (346)
T 4fih_A          225 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN--EPPLKAMKMIRDNLP-------PRL-KNLH  294 (346)
T ss_dssp             CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSSC-------CCC-SCGG
T ss_pred             CcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHcCCC-------CCC-Cccc
Confidence                    1233344444444589999999999999999999999953  334444433332211       111 1123


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+.++.+++.+||+.||++|||++|+++
T Consensus       295 ~~s~~~~dli~~~L~~dP~~R~ta~e~l~  323 (346)
T 4fih_A          295 KVSPSLKGFLDRLLVRDPAQRATAAELLK  323 (346)
T ss_dssp             GSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            34567899999999999999999999875

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=9.2e-46  Score=365.40  Aligned_cols=238  Identities=21%  Similarity=0.329  Sum_probs=181.2

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.+.||+|+||+||+|+. .+|+.||+|++.......  ....+.|.+|+++|++++|||||++++++...+  ..++
T Consensus        15 Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~--~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~--~~~i   90 (275)
T 3hyh_A           15 YQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAK--SDMQGRIEREISYLRLLRHPHIIKLYDVIKSKD--EIIM   90 (275)
T ss_dssp             CEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEE
T ss_pred             eEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCC--HHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC--EEEE
Confidence            44568899999999999995 468999999986543322  233567999999999999999999999998877  7899


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||||| +|+|.+++..  ...+++.....++.|++.||+|||+++  |+||||||+|||+++++.+||+|||+|+.....
T Consensus        91 vmEy~-~g~L~~~l~~--~~~l~e~~~~~~~~qi~~al~ylH~~~--IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~  165 (275)
T 3hyh_A           91 VIEYA-GNELFDYIVQ--RDKMSEQEARRFFQQIISAVEYCHRHK--IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG  165 (275)
T ss_dssp             EEECC-CEEHHHHHHH--SCSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCTTTEEECTTCCEEECCSSCC------
T ss_pred             EEeCC-CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--cccccCChHHeEECCCCCEEEeecCCCeecCCC
Confidence            99999 6899998864  356999999999999999999999999  999999999999999999999999999876432


Q ss_pred             hhh--hcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          459 EMA--ATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       459 ~~~--~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      ...  ...+..+++||       ++.++||||+||++|||+||+.||.  +.+..+.......+...+           +
T Consensus       166 ~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~--~~~~~~~~~~i~~~~~~~-----------p  232 (275)
T 3hyh_A          166 NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFD--DESIPVLFKNISNGVYTL-----------P  232 (275)
T ss_dssp             ---------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHTCCCC-----------C
T ss_pred             CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHHcCCCCC-----------C
Confidence            211  11223334443       4678999999999999999999994  344555555544432221           2


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...+.++.+++.+||+.||++|||++|+++
T Consensus       233 ~~~s~~~~~li~~~L~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          233 KFLSPGAAGLIKRMLIVNPLNRISIHEIMQ  262 (275)
T ss_dssp             TTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            223457889999999999999999999976

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.1e-45  Score=384.54  Aligned_cols=237  Identities=19%  Similarity=0.277  Sum_probs=189.4

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||+|+||.||+|+.. +|+.||||++.......     .+.+.+|+++|++++|||||++++++...+  ..|||
T Consensus       154 ~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~-----~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~--~~~iV  226 (423)
T 4fie_A          154 DNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR-----RELLFNEVVIMRDYQHENVVEMYNSYLVGD--ELWVV  226 (423)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSS-----GGGHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             EeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhH-----HHHHHHHHHHHHhCCCCCCCceEEEEEECC--EEEEE
Confidence            34578999999999999964 68999999987544322     345889999999999999999999999887  78999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      ||||++|+|.++++.   ..+++.....|+.||+.||+|||+++  |+||||||+||||+.++.+||+|||+|+.+... 
T Consensus       227 mEy~~gG~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH~~~--IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~  301 (423)
T 4fie_A          227 MEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQG--VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV  301 (423)
T ss_dssp             EECCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSTTTEEECTTCCEEECCCTTCEECCSSC
T ss_pred             EeCCCCCcHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHCC--eecccCCHHHEEEcCCCCEEEecCccceECCCCC
Confidence            999999999999863   35899999999999999999999999  999999999999999999999999999876422 


Q ss_pred             --------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          459 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       459 --------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                              +..+.+||......|+.++|||||||++|||+||+.||..  ....+....+.....       +.. ....
T Consensus       302 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~--~~~~~~~~~i~~~~~-------~~~-~~~~  371 (423)
T 4fie_A          302 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN--EPPLKAMKMIRDNLP-------PRL-KNLH  371 (423)
T ss_dssp             CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCC-------CCC-SCTT
T ss_pred             ccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHcCCC-------CCC-cccc
Confidence                    1223333333334489999999999999999999999943  334444433333211       111 1122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+.++.+|+.+||+.||++|||+.|+++
T Consensus       372 ~~s~~~~dli~~~L~~dP~~R~ta~ell~  400 (423)
T 4fie_A          372 KVSPSLKGFLDRLLVRDPAQRATAAELLK  400 (423)
T ss_dssp             SSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            33457899999999999999999999875

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=2.3e-46  Score=374.83  Aligned_cols=258  Identities=19%  Similarity=0.277  Sum_probs=201.9

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +++.+.||+|+||+||+|+. .+|+.||||++.......  ....+.+.+|+++|++++|||||++++++.+.+  ..++
T Consensus        34 y~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~~yi  109 (311)
T 4aw0_A           34 FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIK--ENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE--KLYF  109 (311)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEE
T ss_pred             cEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC--EEEE
Confidence            34568999999999999996 468999999987543211  123567999999999999999999999998877  7899


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |||||++|+|.+++...  ..+++.....++.||+.||+|||+++  |+||||||+|||+++++.+||+|||+|+.+...
T Consensus       110 vmEy~~gG~L~~~i~~~--~~l~e~~~~~~~~qi~~al~ylH~~~--IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~  185 (311)
T 4aw0_A          110 GLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGKG--IIHRDLKPENILLNEDMHIQITDFGTAKVLSPE  185 (311)
T ss_dssp             EECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             EEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCCHHHeEEcCCCCEEEEEcCCceecCCC
Confidence            99999999999999743  46899999999999999999999999  999999999999999999999999999876422


Q ss_pred             hh-----hhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          459 EM-----AATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       459 ~~-----~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      ..     ....+..|++||      ++.++||||+||++|||+||+.||.  ..+..+...........+          
T Consensus       186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~--~~~~~~~~~~i~~~~~~~----------  253 (311)
T 4aw0_A          186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR--AGNEGLIFAKIIKLEYDF----------  253 (311)
T ss_dssp             TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHTCCCC----------
T ss_pred             CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHcCCCCC----------
Confidence            11     111233455554      7889999999999999999999994  344555555555442221          


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCCCCccCcccHHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIE  585 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~~p~~~~~~~~~~~  585 (592)
                       ++..+.++.+++.+|++.||++|||++|+... ..++      ..|.+....|.+++
T Consensus       254 -p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~-~~i~------~Hp~F~~idw~~l~  303 (311)
T 4aw0_A          254 -PEKFFPKARDLVEKLLVLDATKRLGCEEMEGY-GPLK------AHPFFESVTWENLH  303 (311)
T ss_dssp             -CTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCH-HHHH------TSGGGTTCCCTTGG
T ss_pred             -CcccCHHHHHHHHHHccCCHhHCcChHHHcCC-HHHH------CCCCcCCCCHHHhc
Confidence             22234578999999999999999999986421 1121      25666667776654

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=4.5e-46  Score=372.66  Aligned_cols=251  Identities=21%  Similarity=0.271  Sum_probs=190.1

Q ss_pred             hhhhcccCcCCCeEEEEEEeC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +++.+.||+|+||+||+|+..    .++.||+|++.......   .....+.+|+++|++++|||||++++++.+.+  .
T Consensus        26 Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~---~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~  100 (304)
T 3ubd_A           26 FELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKV---RDRVRTKMERDILVEVNHPFIVKLHYAFQTEG--K  100 (304)
T ss_dssp             EEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEE---EECC------CCCCCCCCTTEECEEEEEEETT--E
T ss_pred             cEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcCh---HHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC--E
Confidence            445689999999999999852    46789999986543221   11235888999999999999999999999877  7


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++|||||++|+|.+++..  ...+++.....++.|++.||+|||+++  |+||||||+|||+++++.+||+|||+|+..
T Consensus       101 ~~ivmEy~~gg~L~~~l~~--~~~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~~~g~vKl~DFGla~~~  176 (304)
T 3ubd_A          101 LYLILDFLRGGDLFTRLSK--EVMFTEEDVKFYLAELALALDHLHSLG--IIYRDLKPENILLDEEGHIKLTDFGLSKES  176 (304)
T ss_dssp             EEEEECCCTTCEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCCGGGEEECTTSCEEEESSEEEEC-
T ss_pred             EEEEEEcCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--CcCCCCCHHHeEEcCCCCEEecccccceec
Confidence            8999999999999999974  346899999999999999999999999  999999999999999999999999999865


Q ss_pred             hhhhh---hhcccccCCCC------CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          456 AMAEM---AATSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       456 ~~~~~---~~~~~~~~~~~------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      .....   ....+..|++|      .++.++|||||||++|||+||+.||.  ..+..+...........          
T Consensus       177 ~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~--~~~~~~~~~~i~~~~~~----------  244 (304)
T 3ubd_A          177 IDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQ--GKDRKETMTMILKAKLG----------  244 (304)
T ss_dssp             ----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCC----------
T ss_pred             cCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCC--CcCHHHHHHHHHcCCCC----------
Confidence            32221   11122344444      47899999999999999999999994  34455555555543221          


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCH-----HHHHHHHHhhhCCCCCCCCCccCcccHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTM-----RDIAAILREITGITPDGAIPKLSPLWWAEIE  585 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~-----~ev~~~L~~i~~~~~~~~~p~~~~~~~~~~~  585 (592)
                       ++...+.++.+++.+||+.||++|||+     +|++             ..|.+....|..++
T Consensus       245 -~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil-------------~Hp~f~~idw~~l~  294 (304)
T 3ubd_A          245 -MPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIK-------------RHSFFSTIDWNKLY  294 (304)
T ss_dssp             -CCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHH-------------TSGGGTTCCHHHHH
T ss_pred             -CCCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHH-------------cCccccCCCHHHHH
Confidence             122344578999999999999999985     4443             25666667777765

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.2e-44  Score=363.56  Aligned_cols=239  Identities=16%  Similarity=0.280  Sum_probs=173.7

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC------
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP------  373 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~------  373 (592)
                      ++.+.||+|+||+||+|+. .+|..||||++.....    ....+.|.+|+++|++++|||||++++++...+.      
T Consensus         8 ~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~----~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            8 EPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR----ELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             EEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSS----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred             EEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCC----HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence            3458899999999999996 4689999999865432    3345679999999999999999999999875431      


Q ss_pred             ----cceEEEEeeCCCCCchhhccccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEec
Q 007711          374 ----FTRMMVFEYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD  448 (592)
Q Consensus       374 ----~~~~lv~Ey~~~gsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~D  448 (592)
                          ...++|||||++|+|.+++.... ....++.....|+.|++.||+|||+++  |+||||||+|||++.++.+||+|
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~--IiHRDlKp~NILl~~~~~vKl~D  161 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKG--LMHRDLKPSNIFFTMDDVVKVGD  161 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECC
T ss_pred             cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCc--CccccCcHHHeEECCCCcEEEcc
Confidence                13589999999999999997532 234567788899999999999999999  99999999999999999999999


Q ss_pred             CCcchhhhhhhhh---------------hcccccCCCC------CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHH
Q 007711          449 LSFWNEIAMAEMA---------------ATSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA  507 (592)
Q Consensus       449 fGla~~~~~~~~~---------------~~~~~~~~~~------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~  507 (592)
                      ||+|+........               ...+..|++|      .++.++|||||||++|||++   ||.... +.....
T Consensus       162 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~-~~~~~~  237 (299)
T 4g31_A          162 FGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM-ERVRTL  237 (299)
T ss_dssp             CCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH-HHHHHH
T ss_pred             CccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc-HHHHHH
Confidence            9999876432110               0122344444      47999999999999999996   773211 111111


Q ss_pred             HHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .... .         ...+.........+.+++.+||+.||++|||+.|+++
T Consensus       238 ~~~~-~---------~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          238 TDVR-N---------LKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             HHHH-T---------TCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHh-c---------CCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            1111 1         0111111223345778999999999999999999875

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.6e-42  Score=356.28  Aligned_cols=249  Identities=15%  Similarity=0.174  Sum_probs=184.1

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC----Ccc
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE----PFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~----~~~  375 (592)
                      .+.+.||+|+||+||+|+. .+|+.||||++.....   .....+.+.+|+++|++++|||||++++++....    ...
T Consensus        57 ~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~---~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           57 EIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFD---VVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTS---SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             EEEEEEecccCeEEEEEEECCCCCEEEEEEECcccc---chHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            4568899999999999996 4699999999854322   2334567889999999999999999999986432    125


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .|||||||+ |+|.+++..  ...+++.....++.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++.+
T Consensus       134 ~~ivmE~~~-g~L~~~i~~--~~~l~~~~~~~~~~qil~al~ylH~~~--iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~  208 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIHS--SQPLTLEHVRYFLYQLLRGLKYMHSAQ--VIHRDLKPSNLLVNENCELKIGDFGMARGL  208 (398)
T ss_dssp             EEEEEECCS-EEHHHHHTS--SSCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTCCEEECCCTTCBCC
T ss_pred             EEEEEeCCC-CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCc--CcCCCcCccccccCCCCCEEEeecceeeec
Confidence            799999995 789998863  457999999999999999999999999  999999999999999999999999999876


Q ss_pred             hhhhh-------hhcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCcccc
Q 007711          456 AMAEM-------AATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  521 (592)
Q Consensus       456 ~~~~~-------~~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (592)
                      .....       ....+..|++||       ++.++||||+||++|||+||+.||..  .+..+....+...........
T Consensus       209 ~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g--~~~~~~l~~I~~~~g~p~~~~  286 (398)
T 4b99_A          209 CTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPG--KNYVHQLQLIMMVLGTPSPAV  286 (398)
T ss_dssp             -------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCC--SSHHHHHHHHHHHHCCCCGGG
T ss_pred             ccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCC--CCHHHHHHHHHHhcCCCChHH
Confidence            43211       111223344443       68889999999999999999999953  333333332221111110000


Q ss_pred             C---------------CCCCCCC-----HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 D---------------PTLSSFD-----EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ~---------------~~~~~~~-----~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .               +.....+     .....++.+|+.+||+.||++|||+.|+++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  344 (398)
T 4b99_A          287 IQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR  344 (398)
T ss_dssp             TC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             hhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence            0               0000000     112356889999999999999999999876

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=1.3e-40  Score=339.69  Aligned_cols=258  Identities=29%  Similarity=0.506  Sum_probs=205.5

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.+.||+|+||.||+|+++++..||||.+.....     ...+.|.+|++++++++||||+++++++...+  ..++|||
T Consensus        43 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e  115 (321)
T 2qkw_B           43 HKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESS-----QGIEEFETEIETLSFCRHPHLVSLIGFCDERN--EMILIYK  115 (321)
T ss_dssp             CCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCS-----SHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT--CCEEEEE
T ss_pred             ccceeecCCCeeEEEEEECCCCEEEEEEecccCh-----HHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC--eEEEEEE
Confidence            3478999999999999988899999998754322     23567999999999999999999999998776  6799999


Q ss_pred             eCCCCCchhhccccC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          382 YAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~--~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |+++|+|.+++....  ...++|..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++......
T Consensus       116 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  193 (321)
T 2qkw_B          116 YMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA--IIHRDVKSINILLDENFVPKITDFGISKKGTELD  193 (321)
T ss_dssp             CCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCSTTEEECTTCCEEECCCTTCEECSSSS
T ss_pred             cCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCC--eecCCCCHHHEEECCCCCEEEeeccccccccccc
Confidence            999999999986543  245899999999999999999999998  9999999999999999999999999987543211


Q ss_pred             hh-----hcccccCCCC------CCCCCCcchhhHHHHHHHHhCCCcccCCC----CChHHHHHHHhcCCCCCccccCCC
Q 007711          460 MA-----ATSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDN----GSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       460 ~~-----~~~~~~~~~~------~~s~ksDVwSfGvvl~El~tG~~P~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ..     ......+.+|      .++.++|||||||++|||+||+.||....    ....+|...... ...+...+++.
T Consensus       194 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  272 (321)
T 2qkw_B          194 QTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHN-NGQLEQIVDPN  272 (321)
T ss_dssp             CCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHT-TTCCCSSSSSS
T ss_pred             ccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccc-cccHHHhcChh
Confidence            00     0112233444      36889999999999999999999996432    233444333222 23444555554


Q ss_pred             CC-CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          525 LS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       525 ~~-~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                      .. .....++..+.+++.+||+.||++|||+.|+++.|+.++....
T Consensus       273 ~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~~  318 (321)
T 2qkw_B          273 LADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQE  318 (321)
T ss_dssp             CTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSC
T ss_pred             hccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhccc
Confidence            43 4567888999999999999999999999999999999986543

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=5.9e-41  Score=342.91  Aligned_cols=269  Identities=28%  Similarity=0.558  Sum_probs=211.6

Q ss_pred             CCCCCHHHHHHHHhhhh--cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeee
Q 007711          287 VPKLKRSELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL  364 (592)
Q Consensus       287 ~~~~~~~el~~~~~~~~--~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l  364 (592)
                      ...++..++.....+|.  +.||+|+||.||+|+..++..||||.+.......    ....|.+|++++++++||||+++
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~----~~~~~~~e~~~l~~l~h~~iv~~   92 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQG----GELQFQTEVEMISMAVHRNLLRL   92 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC---------CCCHHHHHHHGGGTCCCTTBCCC
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCch----HHHHHHHHHHHHHhccCCCccce
Confidence            45677788887777664  7899999999999998889999999986543221    12368999999999999999999


Q ss_pred             eEEEecCCCcceEEEEeeCCCCCchhhccccC--CCCCCHHHHHHHHHHHHHHHHHhhcC---CCCeEeeCcCCCCeEEc
Q 007711          365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQL---NPPIAHNYLNSSAVHLT  439 (592)
Q Consensus       365 ~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~--~~~l~~~~~~~ia~~ia~gl~yLH~~---~~~ivH~dLk~~NiLl~  439 (592)
                      +++|....  ..++||||+++|+|.++++...  ...++|..+..|+.+++.||+|||+.   +  |+||||||+|||++
T Consensus        93 ~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~--ivH~Dlkp~Nil~~  168 (326)
T 3uim_A           93 RGFCMTPT--ERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPK--IIHRDVKAANILLD  168 (326)
T ss_dssp             CEEECCSS--CCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSC--EECCCCSGGGEEEC
T ss_pred             EEEEecCC--ceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEeCCCchhhEEEC
Confidence            99998876  5689999999999999997542  34599999999999999999999998   6  99999999999999


Q ss_pred             CCCceEEecCCcchhhhhhhhh----hcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccC------CCCCh
Q 007711          440 EDYAAKLSDLSFWNEIAMAEMA----ATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLV------DNGSL  503 (592)
Q Consensus       440 ~~~~~ki~DfGla~~~~~~~~~----~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~------~~~~~  503 (592)
                      +++.+||+|||+++........    ...+..+.+||      ++.++|||||||++|||+||+.||..      .....
T Consensus       169 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~  248 (326)
T 3uim_A          169 EEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVML  248 (326)
T ss_dssp             TTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBH
T ss_pred             CCCCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhH
Confidence            9999999999999765322111    01122334443      68899999999999999999999941      22334


Q ss_pred             HHHHHHHhcCCCCCccccCCCCC-CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          504 EDWAADYLSGVQPLQQFVDPTLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      .+|....... .....+.+.... ..+...+..+.+++.+||+.||++|||+.||++.|++.
T Consensus       249 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~  309 (326)
T 3uim_A          249 LDWVKGLLKE-KKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD  309 (326)
T ss_dssp             HHHHTTTTSS-CCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred             HHHHHHHhhc-hhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence            5555444433 334444444433 55678889999999999999999999999999999974

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=2.2e-40  Score=336.04  Aligned_cols=251  Identities=23%  Similarity=0.364  Sum_probs=192.7

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||.||+|+. +|..||||++.....   .....++|.+|++++++++||||+++++++....  ..++||
T Consensus        40 ~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~  113 (309)
T 3p86_A           40 NIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDF---HAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPP--NLSIVT  113 (309)
T ss_dssp             EEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCC---SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT--CCEEEE
T ss_pred             eeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCC---CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC--ceEEEE
Confidence            3458899999999999987 678999998864332   2344568999999999999999999999998776  579999


Q ss_pred             eeCCCCCchhhccccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      ||+++|+|.+++.... ...+++..+..++.+++.||+|||+.+++|+||||||+|||++.++.+||+|||+++......
T Consensus       114 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~  193 (309)
T 3p86_A          114 EYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTF  193 (309)
T ss_dssp             ECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC---------
T ss_pred             ecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCccccccc
Confidence            9999999999987432 123899999999999999999999998789999999999999999999999999997553221


Q ss_pred             ---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 ---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 ---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                               ..+.+|+......++.++|||||||++|||+||+.||..  ....+...........         ...+.
T Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~--~~~~~~~~~~~~~~~~---------~~~~~  262 (309)
T 3p86_A          194 LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGN--LNPAQVVAAVGFKCKR---------LEIPR  262 (309)
T ss_dssp             --------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTT--SCHHHHHHHHHHSCCC---------CCCCT
T ss_pred             cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhcCCC---------CCCCc
Confidence                     122333333444578899999999999999999999943  3333333322211111         11223


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      ..+..+.+++.+||+.||++|||+.++++.|+.++...
T Consensus       263 ~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~  300 (309)
T 3p86_A          263 NLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA  300 (309)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC--
T ss_pred             cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhC
Confidence            34467899999999999999999999999999998753

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=7.7e-40  Score=331.64  Aligned_cols=274  Identities=26%  Similarity=0.482  Sum_probs=217.7

Q ss_pred             CCCCCCHHHHHHHHhhhh--------cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC
Q 007711          286 GVPKLKRSELEAACEDFS--------NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN  357 (592)
Q Consensus       286 ~~~~~~~~el~~~~~~~~--------~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~  357 (592)
                      ....+++.++..++.+|.        +.||+|+||.||+|.. ++..||||.+...... ......+.|.+|++++++++
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~~~E~~~l~~l~   88 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDI-TTEELKQQFDQEIKVMAKCQ   88 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTS-CTTTHHHHHHHHHHHHHHCC
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCc-chHHHHHHHHHHHHHHHhcC
Confidence            345788999999998875        5699999999999987 6789999988643321 12345678999999999999


Q ss_pred             CCceeeeeEEEecCCCcceEEEEeeCCCCCchhhcccc-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCe
Q 007711          358 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK-ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV  436 (592)
Q Consensus       358 H~niv~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~-~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~Ni  436 (592)
                      ||||+++++++...+  ..++||||+++|+|.+++... ....++|..+..++.+++.||+|||+.+  ++||||||+||
T Consensus        89 h~~i~~~~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dlkp~Ni  164 (307)
T 2nru_A           89 HENLVELLGFSSDGD--DLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENH--HIHRDIKSANI  164 (307)
T ss_dssp             CTTBCCEEEEECSSS--SCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGE
T ss_pred             CCCeEEEEEEEecCC--ceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCC--eecCCCCHHHE
Confidence            999999999998876  569999999999999998643 3456899999999999999999999998  99999999999


Q ss_pred             EEcCCCceEEecCCcchhhhhhhhh-----hcccccCCCCC-----CCCCCcchhhHHHHHHHHhCCCcccCCC--CChH
Q 007711          437 HLTEDYAAKLSDLSFWNEIAMAEMA-----ATSKKLSSAPS-----ASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLE  504 (592)
Q Consensus       437 Ll~~~~~~ki~DfGla~~~~~~~~~-----~~~~~~~~~~~-----~s~ksDVwSfGvvl~El~tG~~P~~~~~--~~~~  504 (592)
                      ++++++.+||+|||+++........     ......+.+||     ++.++||||||+++|||+||+.||....  ....
T Consensus       165 li~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~  244 (307)
T 2nru_A          165 LLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLL  244 (307)
T ss_dssp             EECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTT
T ss_pred             EEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCcccCcchHHHH
Confidence            9999999999999998754321100     01112233333     6889999999999999999999996432  2233


Q ss_pred             HHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          505 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      .+..........+...+++.....+...+..+.+++.+||+.||.+||++.++++.|+++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~  305 (307)
T 2nru_A          245 DIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT  305 (307)
T ss_dssp             HHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC
T ss_pred             HHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence            3433333333444555566566667788889999999999999999999999999999875

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=6.9e-41  Score=358.08  Aligned_cols=247  Identities=22%  Similarity=0.374  Sum_probs=197.9

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ...+.+.||+|+||.||+|.+.++..||||.+.....      ..++|.+|+++|++++||||+++++++.. +  ..++
T Consensus       189 ~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~h~~iv~l~~~~~~-~--~~~l  259 (454)
T 1qcf_A          189 SLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSM------SVEAFLAEANVMKTLQHDKLVKLHAVVTK-E--PIYI  259 (454)
T ss_dssp             GEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSB------CHHHHHHHHHHHTTCCCTTBCCEEEEECS-S--SCEE
T ss_pred             HeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCc------cHHHHHHHHHHHhhCCCCCEeeEEEEEeC-C--ccEE
Confidence            3445689999999999999998889999998864321      25689999999999999999999999874 3  4689


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |||||++|+|.++++......+++..+..++.+++.||+|||+++  |+||||||+|||++.++.+||+|||+++.....
T Consensus       260 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~  337 (454)
T 1qcf_A          260 ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN--YIHRDLRAANILVSASLVCKIADFGLARVIEDN  337 (454)
T ss_dssp             EECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCSGGGEEECTTCCEEECSTTGGGGBCCH
T ss_pred             EEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCCHHHEEECCCCcEEEeeCCCceEcCCC
Confidence            999999999999997544446889999999999999999999998  999999999999999999999999999876432


Q ss_pred             hhhh----cccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          459 EMAA----TSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       459 ~~~~----~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      ....    ..+..+++||      ++.++|||||||++|||+| |+.||.  .....+.......+.. .         .
T Consensus       338 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~--~~~~~~~~~~i~~~~~-~---------~  405 (454)
T 1qcf_A          338 EYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYP--GMSNPEVIRALERGYR-M---------P  405 (454)
T ss_dssp             HHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST--TCCHHHHHHHHHHTCC-C---------C
T ss_pred             ceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHcCCC-C---------C
Confidence            2111    1112244443      7889999999999999999 999994  3334444433333211 1         1


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      .+..++..+.+++.+||+.||++||||++|++.|+++....
T Consensus       406 ~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~  446 (454)
T 1qcf_A          406 RPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTAT  446 (454)
T ss_dssp             CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSS
T ss_pred             CCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhcc
Confidence            13345567999999999999999999999999999987654

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=3e-40  Score=340.61  Aligned_cols=184  Identities=14%  Similarity=0.291  Sum_probs=151.1

Q ss_pred             hhhcccCcCCCeEEEEEEeC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcc
Q 007711          301 DFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~  375 (592)
                      ++.+.||+|+||+||+|+.+    .++.||+|.+....       ...++.+|+++|..+ +|||||++++++...+  .
T Consensus        24 ~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~-------~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~--~   94 (361)
T 4f9c_A           24 KIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS-------HPIRIAAELQCLTVAGGQDNVMGVKYCFRKND--H   94 (361)
T ss_dssp             EEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS-------CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETT--E
T ss_pred             EEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc-------CHHHHHHHHHHHHHhcCCCCCceEEEEEEECC--E
Confidence            44588999999999999852    46789999875322       235678999999998 6999999999998877  7


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC-CceEEecCCcchh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNE  454 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~-~~~ki~DfGla~~  454 (592)
                      .++|||||++|+|.+++.     .+++.....++.|++.||+|||+++  |+||||||+|||++.+ +.+||+|||+|+.
T Consensus        95 ~~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~g--IiHRDiKPeNiLl~~~~~~~kl~DFGla~~  167 (361)
T 4f9c_A           95 VVIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQFG--IVHRDVKPSNFLYNRRLKKYALVDFGLAQG  167 (361)
T ss_dssp             EEEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             EEEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHCC--eEeCcCCHHHeEEeCCCCeEEECcCCCCcc
Confidence            899999999999999884     4889999999999999999999999  9999999999999977 7999999999975


Q ss_pred             hhh-------------------------------------hhhhhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcc
Q 007711          455 IAM-------------------------------------AEMAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPY  496 (592)
Q Consensus       455 ~~~-------------------------------------~~~~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~  496 (592)
                      ...                                     ++..+.+||.. ..+.++.++||||+||++|||+||+.||
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf  247 (361)
T 4f9c_A          168 THDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPF  247 (361)
T ss_dssp             CTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred             cCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCC
Confidence            321                                     11122333322 2234788999999999999999999999


Q ss_pred             cCCC
Q 007711          497 LVDN  500 (592)
Q Consensus       497 ~~~~  500 (592)
                      ....
T Consensus       248 ~~~~  251 (361)
T 4f9c_A          248 YKAS  251 (361)
T ss_dssp             SCCS
T ss_pred             CCCC
Confidence            6443

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=2.8e-40  Score=361.04  Aligned_cols=241  Identities=20%  Similarity=0.289  Sum_probs=191.5

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +++.+.||+|+||.||+|+. .+|..||+|.+....     ....+.+.+|+++|+.++|||||++++++.+..  ..++
T Consensus       159 Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~-----~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~--~~~i  231 (573)
T 3uto_A          159 YDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH-----ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDN--EMVM  231 (573)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-----HHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSS--EEEE
T ss_pred             cEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccc-----hhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECC--EEEE
Confidence            34568899999999999996 468999999886533     223567889999999999999999999998877  7899


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC--CceEEecCCcchhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED--YAAKLSDLSFWNEIA  456 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~--~~~ki~DfGla~~~~  456 (592)
                      |||||++|+|.+++.. ....+++.....++.||+.||+|||+++  |+||||||+|||++.+  +.+||+|||+++.+.
T Consensus       232 v~E~~~gg~L~~~i~~-~~~~l~e~~~~~~~~qi~~al~ylH~~~--iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~  308 (573)
T 3uto_A          232 IYEFMSGGELFEKVAD-EHNKMSEDEAVEYMRQVCKGLCHMHENN--YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLD  308 (573)
T ss_dssp             EEECCCCCBHHHHHTC-TTSCEEHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSSSCCCEEECCCSSCEECC
T ss_pred             EEeecCCCcHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCChhhccccCCCCCCEEEeeccceeEcc
Confidence            9999999999998853 3356899999999999999999999999  9999999999999854  799999999998764


Q ss_pred             hhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          457 MAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       457 ~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      ...        ..+.+||......++.++||||+||++|||++|+.||.  +....+...........+....       
T Consensus       309 ~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~--~~~~~~~~~~i~~~~~~~~~~~-------  379 (573)
T 3uto_A          309 PKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFG--GENDDETLRNVKSCDWNMDDSA-------  379 (573)
T ss_dssp             TTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSC--CSSHHHHHHHHHTTCCCCCSGG-------
T ss_pred             CCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCC--CcCHHHHHHHHHhCCCCCCccc-------
Confidence            322        22333444444457889999999999999999999994  3344444444443322221111       


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+..+.+|+.+||+.||.+|||+.|+++
T Consensus       380 ~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          380 FSGISEDGKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             GTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1123356889999999999999999999876

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=2e-40  Score=353.99  Aligned_cols=244  Identities=25%  Similarity=0.386  Sum_probs=193.3

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||.||+|.+. |..||||.+....       ..+.|.+|+++|++++||||++++|+|..... ..++||
T Consensus       196 ~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~-------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~~iv~  266 (450)
T 1k9a_A          196 KLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVT  266 (450)
T ss_dssp             EEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT-------TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTS-CEEEEE
T ss_pred             EEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch-------HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCC-ceEEEE
Confidence            34588999999999999985 7799999886432       23679999999999999999999999876542 468999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      |||++|+|.++++......+++..+..++.+++.||+|||+++  |+||||||+|||+++++.+||+|||+++.......
T Consensus       267 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  344 (450)
T 1k9a_A          267 EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD  344 (450)
T ss_dssp             ECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEECTTSCEEECCCTTCEECC----
T ss_pred             EecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCCHhhEEECCCCCEEEeeCCCccccccccc
Confidence            9999999999998655556899999999999999999999998  99999999999999999999999999986543222


Q ss_pred             hhcccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          461 AATSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       461 ~~~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                      ....+..+++|      .++.++|||||||++|||+| |+.||....  ..+.......+. .         ...+..++
T Consensus       345 ~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~--~~~~~~~i~~~~-~---------~~~p~~~~  412 (450)
T 1k9a_A          345 TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--LKDVVPRVEKGY-K---------MDAPDGCP  412 (450)
T ss_dssp             --CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSC--TTTHHHHHHTTC-C---------CCCCTTCC
T ss_pred             CCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCC-C---------CCCCCcCC
Confidence            11222233444      47889999999999999999 999995332  222222222221 1         12234455


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ..+.+++.+||+.||++||||.++++.|+++...
T Consensus       413 ~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          413 PAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence            7899999999999999999999999999998643

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=347.58  Aligned_cols=276  Identities=22%  Similarity=0.329  Sum_probs=202.8

Q ss_pred             HHHHHhhhhcccCcCCCeEEEEEEeC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeee
Q 007711          295 LEAACEDFSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLI  365 (592)
Q Consensus       295 l~~~~~~~~~~lG~G~~g~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~  365 (592)
                      +......+.+.||+|+||.||+|+..        .+..||||++....    .....+++.+|+++++++ +||||++++
T Consensus        66 i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~~hpnIv~~~  141 (382)
T 3tt0_A           66 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA----TEKDLSDLISEMEMMKMIGKHKNIINLL  141 (382)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc----CHHHHHHHHHHHHHHHHhcCCchhhhhe
Confidence            33334456689999999999999852        33579999875432    234457899999999999 999999999


Q ss_pred             EEEecCCCcceEEEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCc
Q 007711          366 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL  431 (592)
Q Consensus       366 g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dL  431 (592)
                      ++|...+  ..++||||+++|+|.+++....              ...+++..+..|+.+++.||+|||+.+  |+||||
T Consensus       142 ~~~~~~~--~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dl  217 (382)
T 3tt0_A          142 GACTQDG--PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK--CIHRDL  217 (382)
T ss_dssp             EEECSSS--SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCC
T ss_pred             eeeccCC--ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC--EecCCC
Confidence            9998877  5699999999999999987533              245899999999999999999999998  999999


Q ss_pred             CCCCeEEcCCCceEEecCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCC
Q 007711          432 NSSAVHLTEDYAAKLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVD  499 (592)
Q Consensus       432 k~~NiLl~~~~~~ki~DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~  499 (592)
                      ||+|||+++++.+||+|||+++......           ..+.+|+......++.++|||||||++|||+| |+.||.  
T Consensus       218 kp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~--  295 (382)
T 3tt0_A          218 AARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP--  295 (382)
T ss_dssp             CGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSST--
T ss_pred             CcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCC--
Confidence            9999999999999999999998653211           11233333333347889999999999999999 999994  


Q ss_pred             CCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCCCCccCcc
Q 007711          500 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPL  579 (592)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~~p~~~~~  579 (592)
                      .....+.......... .         ..+..++.++.+++.+||+.||++||+++|+++.|++++........+.....
T Consensus       296 ~~~~~~~~~~~~~~~~-~---------~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~~~~~~~~~  365 (382)
T 3tt0_A          296 GVPVEELFKLLKEGHR-M---------DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQEMGYYHHH  365 (382)
T ss_dssp             TCCHHHHHHHHHTTCC-C---------CCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCSCC-------
T ss_pred             CCCHHHHHHHHHcCCC-C---------CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence            3344444443332211 1         11223345799999999999999999999999999999988888888877777


Q ss_pred             cHHHHHhhhcc
Q 007711          580 WWAEIEILSTE  590 (592)
Q Consensus       580 ~~~~~~~~~~~  590 (592)
                      +|...++-.+|
T Consensus       366 ~~~~~~~~~~~  376 (382)
T 3tt0_A          366 HHHDYDIPTTE  376 (382)
T ss_dssp             -----------
T ss_pred             ccccCCCCCCC
Confidence            88887776654

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=5.2e-40  Score=341.82  Aligned_cols=249  Identities=21%  Similarity=0.341  Sum_probs=195.1

Q ss_pred             hhhhcccCcCCCeEEEEEEeC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEec
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEE  370 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~  370 (592)
                      ..+.+.||+|+||.||+|+..        ++..||||++....    .....++|.+|+++++++ +||||++++++|..
T Consensus        83 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~  158 (370)
T 2psq_A           83 LTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA----TEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ  158 (370)
T ss_dssp             EEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC----BHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS
T ss_pred             CEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc----CHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc
Confidence            345688999999999999852        35679999875432    234467899999999999 89999999999988


Q ss_pred             CCCcceEEEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCe
Q 007711          371 EEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV  436 (592)
Q Consensus       371 ~~~~~~~lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~Ni  436 (592)
                      .+  ..++||||+++|+|.+++....              ...+++..+..++.|++.||+|||+++  |+||||||+||
T Consensus       159 ~~--~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~NI  234 (370)
T 2psq_A          159 DG--PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK--CIHRDLAARNV  234 (370)
T ss_dssp             SS--SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGE
T ss_pred             CC--CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC--eeccccchhhE
Confidence            77  5699999999999999987532              245899999999999999999999998  99999999999


Q ss_pred             EEcCCCceEEecCCcchhhhhhh-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChH
Q 007711          437 HLTEDYAAKLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLE  504 (592)
Q Consensus       437 Ll~~~~~~ki~DfGla~~~~~~~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~  504 (592)
                      |++.++.+||+|||+++......           ..+.+||......++.++|||||||++|||+| |+.||...  ...
T Consensus       235 ll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~--~~~  312 (370)
T 2psq_A          235 LVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI--PVE  312 (370)
T ss_dssp             EECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CGG
T ss_pred             EECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCC--CHH
Confidence            99999999999999998653211           11223333333347889999999999999999 99999532  233


Q ss_pred             HHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          505 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      +.......+.          ....+..++..+.+++.+||+.||++||++.|+++.|++++...
T Consensus       313 ~~~~~~~~~~----------~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~  366 (370)
T 2psq_A          313 ELFKLLKEGH----------RMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT  366 (370)
T ss_dssp             GHHHHHHTTC----------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCC----------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence            3332222221          01123344567999999999999999999999999999987543

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.8e-40  Score=337.78  Aligned_cols=249  Identities=21%  Similarity=0.328  Sum_probs=195.4

Q ss_pred             hhhhcccCcCCCeEEEEEEeC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.+.||+|+||.||+|.+.    .+..||||.+....    .....+.|.+|++++++++||||+++++++...+  .
T Consensus        51 y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~  124 (325)
T 3kul_A           51 IHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY----TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGR--L  124 (325)
T ss_dssp             EEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC----CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGG--C
T ss_pred             eEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC----CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--c
Confidence            445688999999999999974    34569999885332    2345678999999999999999999999998776  5


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++|+|.++++.. ...+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++..
T Consensus       125 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  201 (325)
T 3kul_A          125 AMIVTEYMENGSLDTFLRTH-DGQFTIMQLVGMLRGVGAGMRYLSDLG--YVHRDLAARNVLVDSNLVCKVSDFGLSRVL  201 (325)
T ss_dssp             CEEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred             cEEEeeCCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCC--eeCCCCCcceEEECCCCCEEECCCCccccc
Confidence            69999999999999998643 356899999999999999999999999  999999999999999999999999999876


Q ss_pred             hhhhhhh------cccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccC
Q 007711          456 AMAEMAA------TSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD  522 (592)
Q Consensus       456 ~~~~~~~------~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (592)
                      .......      ..+..+.+||      ++.++|||||||++|||+| |+.||..  ....+.......+..       
T Consensus       202 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~--~~~~~~~~~~~~~~~-------  272 (325)
T 3kul_A          202 EDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWN--MTNRDVISSVEEGYR-------  272 (325)
T ss_dssp             C----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT--SCHHHHHHHHHTTCC-------
T ss_pred             ccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCccc--CCHHHHHHHHHcCCC-------
Confidence            4322110      0011244443      6889999999999999999 9999943  333343333332211       


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       523 ~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                         ...+..++..+.+++.+||+.||++||++.|+++.|+.++....
T Consensus       273 ---~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~  316 (325)
T 3kul_A          273 ---LPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPE  316 (325)
T ss_dssp             ---CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC
T ss_pred             ---CCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcc
Confidence               11123344679999999999999999999999999999986543

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=6.8e-40  Score=356.01  Aligned_cols=241  Identities=15%  Similarity=0.202  Sum_probs=185.6

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCC-CchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKD-WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~-~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.+.||+|+||.||+|+.. +|..||+|++....... .........+.++.+++.++|||||++++++.+.+  ..|+|
T Consensus       193 i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~--~lylV  270 (689)
T 3v5w_A          193 VHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD--KLSFI  270 (689)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECC--EEEEE
Confidence            3488999999999999964 68999999986543211 11122233344577788889999999999998877  78999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      ||||++|+|.+++..  ...+++.....++.+|+.||+|||+++  ||||||||+||||+.++.+||+|||+|+..... 
T Consensus       271 mEy~~GGdL~~~l~~--~~~l~E~~a~~y~~qIl~aL~yLH~~g--IiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~  346 (689)
T 3v5w_A          271 LDLMNGGDLHYHLSQ--HGVFSEADMRFYAAEIILGLEHMHNRF--VVYRDLKPANILLDEHGHVRISDLGLACDFSKKK  346 (689)
T ss_dssp             ECCCCSCBHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCSGGGEEECTTSCEEECCCTTCEECSSCC
T ss_pred             EecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCchHHeEEeCCCCEEecccceeeecCCCC
Confidence            999999999999974  356899999999999999999999999  999999999999999999999999999876422 


Q ss_pred             ------hhhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCC-ChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          459 ------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       459 ------~~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                            +..+.+||... ...|+.++||||+||++|||+||+.||..... +..+...........           ++.
T Consensus       347 ~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~-----------~p~  415 (689)
T 3v5w_A          347 PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVE-----------LPD  415 (689)
T ss_dssp             CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCC-----------CCT
T ss_pred             CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCC-----------CCc
Confidence                  23344444432 34578899999999999999999999964332 333333333322111           122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPT-----MRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs-----~~ev~~  559 (592)
                      ..+.++.+++.+||+.||.+|++     ++||.+
T Consensus       416 ~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~  449 (689)
T 3v5w_A          416 SFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  449 (689)
T ss_dssp             TSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred             cCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence            33457899999999999999998     576653

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=2.2e-40  Score=353.91  Aligned_cols=250  Identities=24%  Similarity=0.368  Sum_probs=196.3

Q ss_pred             hhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ..+.+.||+|+||.||+|.+.++..||||.+.....      ..++|.+|+++|++++||||+++++++.. +  ..++|
T Consensus       186 ~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~--~~~iv  256 (452)
T 1fmk_A          186 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM------SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E--PIYIV  256 (452)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS------CHHHHHHHHHHHHHCCCTTBCCEEEEECS-S--SCEEE
T ss_pred             ceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC------CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-C--ceEEE
Confidence            345688999999999999998888899998864321      24679999999999999999999999976 3  46899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      ||||++|+|.++++......+++..+..++.+++.||+|||+++  |+||||||+|||+++++.+||+|||+++......
T Consensus       257 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~--ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~  334 (452)
T 1fmk_A          257 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNE  334 (452)
T ss_dssp             ECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECGGGCEEECCCCTTC------
T ss_pred             ehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCChhhEEECCCCCEEECCCccceecCCCc
Confidence            99999999999997544456899999999999999999999998  9999999999999999999999999998764321


Q ss_pred             hh----hcccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          460 MA----ATSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       460 ~~----~~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      ..    ...+..+++|      .++.++|||||||++|||+| |+.||.  .....+.......+. .         ...
T Consensus       335 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~--~~~~~~~~~~i~~~~-~---------~~~  402 (452)
T 1fmk_A          335 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP--GMVNREVLDQVERGY-R---------MPC  402 (452)
T ss_dssp             --------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST--TCCHHHHHHHHHTTC-C---------CCC
T ss_pred             eecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHcCC-C---------CCC
Confidence            11    1111233444      37889999999999999999 999994  333334433333221 1         112


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCC
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGA  572 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~  572 (592)
                      +..++..+.+++.+||+.||++|||++++++.|+++.......-
T Consensus       403 ~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~~~  446 (452)
T 1fmk_A          403 PPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQY  446 (452)
T ss_dssp             CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCCC
T ss_pred             CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCccc
Confidence            33455679999999999999999999999999999987654433

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=1.3e-40  Score=359.60  Aligned_cols=251  Identities=22%  Similarity=0.347  Sum_probs=198.7

Q ss_pred             HHHHHhhhhcccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC
Q 007711          295 LEAACEDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP  373 (592)
Q Consensus       295 l~~~~~~~~~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  373 (592)
                      +......+.+.||+|+||.||+|.+.. +..||||.+.....      ..++|.+|+++|++++||||++++|+|.... 
T Consensus       217 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~-  289 (495)
T 1opk_A          217 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM------EVEEFLKEAAVMKEIKHPNLVQLLGVCTREP-  289 (495)
T ss_dssp             CCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-
T ss_pred             cCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc------chHHHHHHHHHHHhcCCCCEeeEEEEEecCC-
Confidence            333334556899999999999999864 88999998864321      2467999999999999999999999998877 


Q ss_pred             cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcch
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  453 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~  453 (592)
                       ..++|||||++|+|.++++......+++..++.|+.+++.||+|||+++  |+||||||+|||+++++.+||+|||+++
T Consensus       290 -~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivHrDlkp~NIll~~~~~~kl~DFG~a~  366 (495)
T 1opk_A          290 -PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN--FIHRNLAARNCLVGENHLVKVADFGLSR  366 (495)
T ss_dssp             -SCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECGGGCEEECCTTCEE
T ss_pred             -cEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCChhhEEECCCCcEEEeecccce
Confidence             5699999999999999997655567899999999999999999999999  9999999999999999999999999998


Q ss_pred             hhhhhhhh----hcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccC
Q 007711          454 EIAMAEMA----ATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD  522 (592)
Q Consensus       454 ~~~~~~~~----~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (592)
                      ........    ...+..+++||      ++.++|||||||++|||+| |+.||....  ..+.......+ ..      
T Consensus       367 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~--~~~~~~~~~~~-~~------  437 (495)
T 1opk_A          367 LMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEKD-YR------  437 (495)
T ss_dssp             CCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTT-CC------
T ss_pred             eccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcC-CC------
Confidence            75422111    01112344554      6889999999999999999 999995332  22222222211 11      


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       523 ~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                         ...+..++..+.+++.+||+.||++||+|.+|++.|+.+...
T Consensus       438 ---~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~~  479 (495)
T 1opk_A          438 ---MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  479 (495)
T ss_dssp             ---CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCSS
T ss_pred             ---CCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHhc
Confidence               112334556799999999999999999999999999988643

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=3.7e-40  Score=343.25  Aligned_cols=246  Identities=20%  Similarity=0.347  Sum_probs=186.5

Q ss_pred             hhhcccCcCCCeEEEEEEeC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          301 DFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      .+.+.||+|+||.||+|++.    ++..||||.+....    .....++|.+|++++++++||||++++|+|....  ..
T Consensus        48 ~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~  121 (373)
T 2qol_A           48 SIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY----TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK--PV  121 (373)
T ss_dssp             CCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC----CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--SC
T ss_pred             eeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc----CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC--ce
Confidence            35688999999999999864    57789999885432    2345678999999999999999999999998876  56


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++||||+++|+|.++++. ....+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       122 ~lv~e~~~~~sL~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  198 (373)
T 2qol_A          122 MIVTEYMENGSLDSFLRK-HDAQFTVIQLVGMLRGIASGMKYLSDMG--YVHRDLAARNILINSNLVCKVSDFGLGRVLE  198 (373)
T ss_dssp             EEEEECCTTCBHHHHHHT-TTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred             EEEEeCCCCCcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeCCCCCcceEEEcCCCCEEECcCccccccc
Confidence            999999999999999964 3456899999999999999999999998  9999999999999999999999999998764


Q ss_pred             hhhhhh------cccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          457 MAEMAA------TSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       457 ~~~~~~------~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ......      ..+..+.+|      .++.++|||||||++|||++ |+.||..  ....+.......+..      . 
T Consensus       199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~--~~~~~~~~~i~~~~~------~-  269 (373)
T 2qol_A          199 DDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWE--MSNQDVIKAVDEGYR------L-  269 (373)
T ss_dssp             ---------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTT--CCHHHHHHHHHTTEE------C-
T ss_pred             cCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCC------C-
Confidence            322110      011224444      47889999999999999998 9999943  333333333322210      0 


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                         ..+..++..+.+++.+||+.||++||++.++++.|+++...
T Consensus       270 ---~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~  310 (373)
T 2qol_A          270 ---PPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN  310 (373)
T ss_dssp             ---CCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             ---CCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence               11223456799999999999999999999999999998654

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=1.4e-40  Score=347.19  Aligned_cols=245  Identities=26%  Similarity=0.360  Sum_probs=193.7

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|++. ++..||||.+....    .....++|.+|+++|++++||||++++|+|...+  ..++|
T Consensus       117 ~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~lv  190 (377)
T 3cbl_A          117 VLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL----PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ--PIYIV  190 (377)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS----CHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSS--SCEEE
T ss_pred             EEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC----CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCC--CcEEE
Confidence            35688999999999999986 68899999875321    2334567899999999999999999999998776  56999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++|+|.++++.. ...+++..+..++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++......
T Consensus       191 ~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~  267 (377)
T 3cbl_A          191 MELVQGGDFLTFLRTE-GARLRVKTLLQMVGDAAAGMEYLESKC--CIHRDLAARNCLVTEKNVLKISDFGMSREEADGV  267 (377)
T ss_dssp             EECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCGGGCEECTTSE
T ss_pred             EEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--cCCcccCHHHEEEcCCCcEEECcCCCceecCCCc
Confidence            9999999999998742 345899999999999999999999999  9999999999999999999999999987643221


Q ss_pred             hhh-----cccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          460 MAA-----TSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       460 ~~~-----~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      ...     ..+..+.+||      ++.++|||||||++|||+| |+.||..  ....+.......+ ..         ..
T Consensus       268 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~--~~~~~~~~~~~~~-~~---------~~  335 (377)
T 3cbl_A          268 YAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPN--LSNQQTREFVEKG-GR---------LP  335 (377)
T ss_dssp             EECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTT--SCHHHHHHHHHTT-CC---------CC
T ss_pred             eeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcC-CC---------CC
Confidence            110     0112344554      6789999999999999999 9999943  2233322222221 11         11


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      .+..++..+.+++.+||+.||++||||.++++.|+++.+
T Consensus       336 ~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~  374 (377)
T 3cbl_A          336 CPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRK  374 (377)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHh
Confidence            233345679999999999999999999999999999864

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.4e-40  Score=331.60  Aligned_cols=243  Identities=19%  Similarity=0.259  Sum_probs=191.2

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... ++..||+|.+...     .....+.|.+|++++++++||||+++++++...+  ..++||
T Consensus        14 ~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~-----~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~   86 (310)
T 3s95_A           14 HGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF-----DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDK--RLNFIT   86 (310)
T ss_dssp             EEEEEECCSSEEEEEEEETTTCCEEEEEEESCC-----CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             ccceecCCCCEEEEEEEECCCCcEEEEEEeccC-----CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCC--eeEEEE
Confidence            4578999999999999974 5889999987432     2345678999999999999999999999999877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++... ...++|..+..++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++...... 
T Consensus        87 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  163 (310)
T 3s95_A           87 EYIKGGTLRGIIKSM-DSQYPWSQRVSFAKDIASGMAYLHSMN--IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKT  163 (310)
T ss_dssp             ECCTTCBHHHHHHHC-CTTSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSTTSEEECTTSCEEECCCTTCEECC----
T ss_pred             EecCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCCcCeEEECCCCCEEEeecccceecccccc
Confidence            999999999999743 456899999999999999999999999  9999999999999999999999999997653221 


Q ss_pred             ----------------------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChH---HHHHHHhcCC
Q 007711          460 ----------------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE---DWAADYLSGV  514 (592)
Q Consensus       460 ----------------------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~---~~~~~~~~~~  514 (592)
                                            ..+.+|+......++.++|||||||++|||++|..|+........   ......... 
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-  242 (310)
T 3s95_A          164 QPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR-  242 (310)
T ss_dssp             ----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHH-
T ss_pred             cccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccc-
Confidence                                  112333333444578899999999999999999999843211000   000000000 


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          515 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                                  ..+..++..+.+++.+||+.||++|||+.++++.|+.+...
T Consensus       243 ------------~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~  283 (310)
T 3s95_A          243 ------------YCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMH  283 (310)
T ss_dssp             ------------TCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ------------cCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence                        01122334688999999999999999999999999998654

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=5.7e-39  Score=318.94  Aligned_cols=243  Identities=23%  Similarity=0.371  Sum_probs=194.7

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||.||+|...++..||+|++.....      ..++|.+|++++++++||||+++++++....  ..++||
T Consensus        13 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   84 (269)
T 4hcu_A           13 TFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM------SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA--PICLVF   84 (269)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB------CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--SEEEEE
T ss_pred             eeeheecCCCccEEEEEEecCCCeEEEEEeccccc------CHHHHHHHHHHHHhCCCCCEeeEEEEEecCC--ceEEEE
Confidence            34588999999999999998889999998864332      2467999999999999999999999998876  579999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.......
T Consensus        85 e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  161 (269)
T 4hcu_A           85 EFMEHGCLSDYLRT-QRGLFAAETLLGMCLDVCEGMAYLEEAC--VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY  161 (269)
T ss_dssp             ECCTTCBHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred             EeCCCCcHHHHHHh-cCcccCHHHHHHHHHHHHHHHHHHHhCC--eecCCcchheEEEcCCCCEEecccccccccccccc
Confidence            99999999999864 3356899999999999999999999999  99999999999999999999999999986543221


Q ss_pred             h----------hcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          461 A----------ATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       461 ~----------~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      .          +.+|+......++.++||||||+++|||+| |+.||.  .....+...........    .      .+
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~--~~~~~~~~~~~~~~~~~----~------~~  229 (269)
T 4hcu_A          162 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE--NRSNSEVVEDISTGFRL----Y------KP  229 (269)
T ss_dssp             HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT--TCCHHHHHHHHHTTCCC----C------CC
T ss_pred             ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCC--CCCHHHHHHHHhcCccC----C------CC
Confidence            1          222222222346889999999999999999 999994  33344444443332111    1      11


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      ...+..+.+++.+||+.||++||++.|+++.|+++..
T Consensus       230 ~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~  266 (269)
T 4hcu_A          230 RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  266 (269)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence            2223568999999999999999999999999999864

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=5.6e-40  Score=330.79  Aligned_cols=256  Identities=17%  Similarity=0.282  Sum_probs=189.8

Q ss_pred             hhhhcccCcCCCeEEEEEEe-----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  374 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  374 (592)
                      ..+.+.||+|+||.||+|++     .++..||||++....     ....+.|.+|++++++++||||++++++|...+..
T Consensus        12 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   86 (295)
T 3ugc_A           12 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST-----EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR   86 (295)
T ss_dssp             EEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCC-----HHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHT
T ss_pred             hhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCC-----HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCC
Confidence            34568899999999999985     368899999875332     33457899999999999999999999999754322


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..++||||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.
T Consensus        87 ~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~  163 (295)
T 3ugc_A           87 NLKLIMEYLPYGSLRDYLQKH-KERIDHIKLLQYTSQICKGMEYLGTKR--YIHRDLATRNILVENENRVKIGDFGLTKV  163 (295)
T ss_dssp             SCEEEEECCTTCBHHHHHHHC-GGGCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEEETTEEEECCCCSCC-
T ss_pred             ceEEEEEeCCCCCHHHHHHhc-ccccCHHHHHHHHHHHHHHHHHHhcCC--cccCCCCHhhEEEcCCCeEEEccCccccc
Confidence            468999999999999998643 345899999999999999999999998  99999999999999999999999999987


Q ss_pred             hhhhhh------------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC------
Q 007711          455 IAMAEM------------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP------  516 (592)
Q Consensus       455 ~~~~~~------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~------  516 (592)
                      ......            .+.+|+......++.++||||||+++|||+||..|+....   .++.. .......      
T Consensus       164 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~---~~~~~-~~~~~~~~~~~~~  239 (295)
T 3ugc_A          164 LPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP---AEFMR-MIGNDKQGQMIVF  239 (295)
T ss_dssp             ------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHH---HHHHH-HHCTTCCTHHHHH
T ss_pred             ccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCCh---HHHHh-hhcCccccchhHH
Confidence            643221            1222222222347889999999999999999999884211   11100 0000000      


Q ss_pred             --CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          517 --LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       517 --~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                        ...+........+..++.++.+++.+||+.||++|||+.|+++.|+++...
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~  292 (295)
T 3ugc_A          240 HLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDN  292 (295)
T ss_dssp             HHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence              000001111122344556899999999999999999999999999998754

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=5.9e-40  Score=357.58  Aligned_cols=249  Identities=24%  Similarity=0.374  Sum_probs=198.5

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ...+.+.||+|+||.||+|.+.++..||||++.....      ..++|.+|+++|++++|+||++++++|.+ +  ..++
T Consensus       268 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~--~~~l  338 (535)
T 2h8h_A          268 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM------SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E--PIYI  338 (535)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS------CHHHHHHHHHHHHHCCCTTBCCEEEEECS-S--SCEE
T ss_pred             hhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC------CHHHHHHHHHHHHhCCCCCEeeEEEEEee-c--cceE
Confidence            3445688999999999999998888899998864321      24679999999999999999999999976 3  4689


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |||||++|+|.++++......+++..+..|+.+|+.||+|||+++  |+||||||+|||+++++.+||+|||+++.....
T Consensus       339 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~--ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~  416 (535)
T 2h8h_A          339 VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDN  416 (535)
T ss_dssp             EECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECGGGCEEECCTTSTTTCCCH
T ss_pred             eeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCCHhhEEEcCCCcEEEcccccceecCCC
Confidence            999999999999997544456899999999999999999999999  999999999999999999999999999876432


Q ss_pred             hhhh----cccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          459 EMAA----TSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       459 ~~~~----~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      ....    ..+..+++||      ++.++|||||||++|||+| |+.||.  .....+.......+. .         ..
T Consensus       417 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~--~~~~~~~~~~i~~~~-~---------~~  484 (535)
T 2h8h_A          417 EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP--GMVNREVLDQVERGY-R---------MP  484 (535)
T ss_dssp             HHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSST--TCCHHHHHHHHHTTC-C---------CC
T ss_pred             ceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHcCC-C---------CC
Confidence            2111    1112344443      7889999999999999999 999994  333334433333221 1         11


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCC
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  570 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~  570 (592)
                      .+..++..+.+++.+||+.||++||+|++|++.|+++......
T Consensus       485 ~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~~  527 (535)
T 2h8h_A          485 CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEP  527 (535)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCSC
T ss_pred             CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccCc
Confidence            2334456799999999999999999999999999999765433

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=2.4e-39  Score=321.33  Aligned_cols=246  Identities=22%  Similarity=0.354  Sum_probs=193.7

Q ss_pred             hhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ..+.+.||+|+||.||+|.+.++..||+|.+.....      ..+++.+|++++.+++||||+++++++....  ..++|
T Consensus        10 y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   81 (268)
T 3sxs_A           10 ITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM------SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEY--PIYIV   81 (268)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--SEEEE
T ss_pred             eeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC------cHHHHHHHHHHHHhCCCCCEeeEEEEEccCC--ceEEE
Confidence            345688999999999999998888999998864332      2467899999999999999999999998776  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++......
T Consensus        82 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~  158 (268)
T 3sxs_A           82 TEYISNGCLLNYLRSH-GKGLEPSQLLEMCYDVCEGMAFLESHQ--FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ  158 (268)
T ss_dssp             EECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHHHTT--EEESSCSGGGEEECTTCCEEECCTTCEEECCTTC
T ss_pred             EEccCCCcHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCcCcceEEECCCCCEEEccCccceecchhh
Confidence            9999999999998643 345899999999999999999999998  9999999999999999999999999987654322


Q ss_pred             hhhc----ccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          460 MAAT----SKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       460 ~~~~----~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      ....    .+..+.+||      ++.++||||||+++|||+| |+.||..  ....+...........    ..      
T Consensus       159 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~~~~~~~~~----~~------  226 (268)
T 3sxs_A          159 YVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDL--YTNSEVVLKVSQGHRL----YR------  226 (268)
T ss_dssp             EEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTT--SCHHHHHHHHHTTCCC----CC------
T ss_pred             hhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccc--cChHHHHHHHHcCCCC----CC------
Confidence            1100    011234443      6889999999999999999 9999943  3333333333322111    11      


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      +...+..+.+++.+||+.||++|||+.|+++.|+.+....
T Consensus       227 ~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~~  266 (268)
T 3sxs_A          227 PHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREKD  266 (268)
T ss_dssp             CTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC--
T ss_pred             CCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhcc
Confidence            1222357899999999999999999999999999986543

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=3.1e-39  Score=320.65  Aligned_cols=251  Identities=22%  Similarity=0.364  Sum_probs=194.5

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||.||+|++. +..+|||++.....   .....+.|.+|++++++++||||+++++++........++||
T Consensus        13 ~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (271)
T 3kmu_A           13 NFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDW---STRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT   88 (271)
T ss_dssp             EEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTC---CHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred             HHHHHhcCCCcceEEEEEEC-CeeEEEEEeccccc---CHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence            34688999999999999984 88899998865432   234557799999999999999999999999876333679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++.......+++..+..++.+++.||+|||+.+++++||||||+||++++++.+||+|||+........ 
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~~~~  168 (271)
T 3kmu_A           89 HWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGR  168 (271)
T ss_dssp             ECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSCTTC
T ss_pred             cccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceeeecccCc
Confidence            9999999999998655557999999999999999999999988889999999999999999999999888865533221 


Q ss_pred             ---hhhcccccCCCCC---CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          460 ---MAATSKKLSSAPS---ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       460 ---~~~~~~~~~~~~~---~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                         ..+.+|+......   ++.++||||||+++|||+||+.||..  ....+...........      +   ..+...+
T Consensus       169 ~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~  237 (271)
T 3kmu_A          169 MYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFAD--LSNMEIGMKVALEGLR------P---TIPPGIS  237 (271)
T ss_dssp             BSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTT--SCHHHHHHHHHHSCCC------C---CCCTTCC
T ss_pred             cCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccc--cChHHHHHHHHhcCCC------C---CCCCCCC
Confidence               1222222221111   23379999999999999999999943  3333333333322111      1   1222344


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      ..+.+++.+||+.||++|||++|+++.|+++..
T Consensus       238 ~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          238 PHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence            579999999999999999999999999998854

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.3e-38  Score=324.76  Aligned_cols=250  Identities=19%  Similarity=0.260  Sum_probs=195.7

Q ss_pred             CCCCHHHHHHHHhh------------hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHh
Q 007711          288 PKLKRSELEAACED------------FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLS  354 (592)
Q Consensus       288 ~~~~~~el~~~~~~------------~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~  354 (592)
                      +.++.+++..++..            ..+.||+|+||.||+|+.. +|+.||||++......     ..+.+.+|+.+++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~-----~~~~~~~E~~~l~   97 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQ-----RRELLFNEVVIMR   97 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-----SHHHHHHHHHHHT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchh-----HHHHHHHHHHHHH
Confidence            45777788777753            2368999999999999975 7999999998654322     2467889999999


Q ss_pred             cCCCCceeeeeEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCC
Q 007711          355 KVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSS  434 (592)
Q Consensus       355 ~l~H~niv~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~  434 (592)
                      +++||||+++++++...+  ..++||||+++|+|.+++..   ..+++..+..++.+++.||+|||+.+  |+||||||+
T Consensus        98 ~l~h~niv~~~~~~~~~~--~~~lv~e~~~~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~  170 (321)
T 2c30_A           98 DYQHFNVVEMYKSYLVGE--ELWVLMEFLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLHAQG--VIHRDIKSD  170 (321)
T ss_dssp             TCCCTTBCCEEEEEEETT--EEEEEECCCCSCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGG
T ss_pred             hCCCCCcceEEEEEEECC--EEEEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHH
Confidence            999999999999998877  67999999999999998853   46899999999999999999999998  999999999


Q ss_pred             CeEEcCCCceEEecCCcchhhhhh---------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHH
Q 007711          435 AVHLTEDYAAKLSDLSFWNEIAMA---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLED  505 (592)
Q Consensus       435 NiLl~~~~~~ki~DfGla~~~~~~---------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~  505 (592)
                      ||+++.++.+||+|||+++.....         ...+.+|+......++.++|||||||++|||+||+.||..  ....+
T Consensus       171 NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~--~~~~~  248 (321)
T 2c30_A          171 SILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFS--DSPVQ  248 (321)
T ss_dssp             GEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHH
T ss_pred             HEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHH
Confidence            999999999999999998765321         1123334433344578899999999999999999999953  23333


Q ss_pred             HHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          506 WAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..........       +.. ......+..+.+++.+||+.||++|||+.|+++
T Consensus       249 ~~~~~~~~~~-------~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  294 (321)
T 2c30_A          249 AMKRLRDSPP-------PKL-KNSHKVSPVLRDFLERMLVRDPQERATAQELLD  294 (321)
T ss_dssp             HHHHHHHSSC-------CCC-TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHHhcCCC-------CCc-CccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            3333222211       111 112233457899999999999999999999976

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=5.2e-39  Score=322.31  Aligned_cols=250  Identities=24%  Similarity=0.420  Sum_probs=191.8

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCch--hHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPK--NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~--~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      .+.+.||+|+||.||+|+. .++..||+|.+..........  ...+.|.+|++++++++||||+++++++....    +
T Consensus        22 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~   97 (287)
T 4f0f_A           22 EYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP----R   97 (287)
T ss_dssp             EEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT----E
T ss_pred             eehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC----e
Confidence            3467899999999999996 478899999886544322111  01167899999999999999999999986543    7


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc-----eEEecCCcc
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA-----AKLSDLSFW  452 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~-----~ki~DfGla  452 (592)
                      +||||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+++|+||||||+||+++.++.     +||+|||++
T Consensus        98 lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~  176 (287)
T 4f0f_A           98 MVMEFVPCGDLYHRLLD-KAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS  176 (287)
T ss_dssp             EEEECCTTCBHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTC
T ss_pred             EEEEecCCCCHHHHHhc-ccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCcc
Confidence            99999999999988864 345789999999999999999999998877999999999999988776     999999998


Q ss_pred             hhhhhhhh------hhcccccC--CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          453 NEIAMAEM------AATSKKLS--SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       453 ~~~~~~~~------~~~~~~~~--~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      +.......      .+.+|+..  ....++.++|||||||++|||+||+.||...................  .    + 
T Consensus       177 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~--~----~-  249 (287)
T 4f0f_A          177 QQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGL--R----P-  249 (287)
T ss_dssp             BCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCC--C----C-
T ss_pred             ccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCC--C----C-
Confidence            75533221      22333332  12225678999999999999999999996544443333333222211  1    1 


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                        ..+..++..+.+++.+||+.||++||++.|+++.|+++
T Consensus       250 --~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          250 --TIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             --CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             --CCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence              12233446799999999999999999999999999864

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=3e-39  Score=329.75  Aligned_cols=247  Identities=21%  Similarity=0.291  Sum_probs=188.2

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC--cceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP--FTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~--~~~~lv  379 (592)
                      +.+.||+|+||.||+|++. +..||||++....      .....+..|+.++++++||||+++++++.....  ...++|
T Consensus        28 ~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~------~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv  100 (322)
T 3soc_A           28 LLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD------KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI  100 (322)
T ss_dssp             EEEEEECSTTCEEEEEEET-TEEEEEEEECGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             hhheecccCceEEEEEEEC-CCEEEEEEeecCc------hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence            4578999999999999985 7899999885432      234456679999999999999999999987542  236899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC----------CCCeEeeCcCCCCeEEcCCCceEEecC
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL----------NPPIAHNYLNSSAVHLTEDYAAKLSDL  449 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~----------~~~ivH~dLk~~NiLl~~~~~~ki~Df  449 (592)
                      |||+++|+|.++++.   ..++|..+..++.+++.||+|||+.          +  |+||||||+|||++.++.+||+||
T Consensus       101 ~e~~~~g~L~~~l~~---~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~--ivH~Dlkp~Nill~~~~~~kL~DF  175 (322)
T 3soc_A          101 TAFHEKGSLSDFLKA---NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPA--ISHRDIKSKNVLLKNNLTACIADF  175 (322)
T ss_dssp             EECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECE--EECSCCSGGGEEECTTCCEEECCC
T ss_pred             EecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCC--EEeCCCChHhEEECCCCeEEEccC
Confidence            999999999999964   3489999999999999999999998          6  999999999999999999999999


Q ss_pred             Ccchhhhhhhhh-----hcccccCCCCC-----------CCCCCcchhhHHHHHHHHhCCCcccCCCC------------
Q 007711          450 SFWNEIAMAEMA-----ATSKKLSSAPS-----------ASLESNVYNFGVLLFEMVTGRLPYLVDNG------------  501 (592)
Q Consensus       450 Gla~~~~~~~~~-----~~~~~~~~~~~-----------~s~ksDVwSfGvvl~El~tG~~P~~~~~~------------  501 (592)
                      |+++........     ...+..+.+||           ++.++|||||||++|||+||+.||.....            
T Consensus       176 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~  255 (322)
T 3soc_A          176 GLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQ  255 (322)
T ss_dssp             TTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCS
T ss_pred             CcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhcc
Confidence            999765322110     11122233333           34578999999999999999999964321            


Q ss_pred             --ChHHHHHHHhcCCCCCccccCCCCCC--CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          502 --SLEDWAADYLSGVQPLQQFVDPTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       502 --~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                        ...++........      ..+....  ....++.++.+++.+||+.||++|||+.|+++.|+++.+
T Consensus       256 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~  318 (322)
T 3soc_A          256 HPSLEDMQEVVVHKK------KRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQR  318 (322)
T ss_dssp             SCCHHHHHHHHTTSC------CCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhccc------CCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence              1222222221111      1111111  123456779999999999999999999999999999864

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=7.9e-39  Score=320.27  Aligned_cols=244  Identities=18%  Similarity=0.328  Sum_probs=191.4

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||.||+|.+.++..||+|++.....      ..++|.+|++++.+++|+||+++++++...+  ..++||
T Consensus        27 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   98 (283)
T 3gen_A           27 TFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM------SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR--PIFIIT   98 (283)
T ss_dssp             EEEEECC---CEEEEEEEETTTEEEEEEEECTTSB------CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--SEEEEE
T ss_pred             HhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC------CHHHHHHHHHHHhcCCCCCEeeEEEEEecCC--CeEEEE
Confidence            34588999999999999998888999998864332      2467999999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+||++++++.+||+|||+++.......
T Consensus        99 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~  175 (283)
T 3gen_A           99 EYMANGCLLNYLREM-RHRFQTQQLLEMCKDVCEAMEYLESKQ--FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY  175 (283)
T ss_dssp             CCCTTCBHHHHHHCG-GGCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHH
T ss_pred             eccCCCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHHCC--ccCCCCccceEEEcCCCCEEEcccccccccccccc
Confidence            999999999998642 346899999999999999999999998  99999999999999999999999999986543221


Q ss_pred             h----------hcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          461 A----------ATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       461 ~----------~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      .          +.+|+......++.++||||||+++|||+| |+.||..  ....+...........          ..+
T Consensus       176 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~--~~~~~~~~~~~~~~~~----------~~~  243 (283)
T 3gen_A          176 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYER--FTNSETAEHIAQGLRL----------YRP  243 (283)
T ss_dssp             HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTT--SCHHHHHHHHHTTCCC----------CCC
T ss_pred             ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccc--cChhHHHHHHhcccCC----------CCC
Confidence            1          222222222347889999999999999999 9999943  2333333333322111          011


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ...+..+.+++.+||+.||++|||+.|+++.|++++..
T Consensus       244 ~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~  281 (283)
T 3gen_A          244 HLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE  281 (283)
T ss_dssp             TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence            22235788999999999999999999999999998753

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-38  Score=323.43  Aligned_cols=249  Identities=21%  Similarity=0.370  Sum_probs=188.2

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.+.||+|+||.||+|++. +..||||.+...       ...+.|.+|++++++++||||++++|++.+    ..++|||
T Consensus        12 ~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~-------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----~~~lv~e   79 (307)
T 2eva_A           12 VEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE-------SERKAFIVELRQLSRVNHPNIVKLYGACLN----PVCLVME   79 (307)
T ss_dssp             EEEEEECCSSSEEEEEEET-TEEEEEEECSST-------THHHHHHHHHHHHHHCCCTTBCCEEEBCTT----TTEEEEE
T ss_pred             eeeEeecCCCceEEEEEEC-CeeEEEEEecCh-------hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC----CcEEEEE
Confidence            4578999999999999984 788999987422       235679999999999999999999998864    3489999


Q ss_pred             eCCCCCchhhccccCC-CCCCHHHHHHHHHHHHHHHHHhhcCC-CCeEeeCcCCCCeEEcCCCc-eEEecCCcchhhhhh
Q 007711          382 YAPNGTLFEHIHIKES-EHLDWGMRLRIAMGMAYCLEHMHQLN-PPIAHNYLNSSAVHLTEDYA-AKLSDLSFWNEIAMA  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~-~~l~~~~~~~ia~~ia~gl~yLH~~~-~~ivH~dLk~~NiLl~~~~~-~ki~DfGla~~~~~~  458 (592)
                      |+++|+|.++++.... ..+++..+..++.++++||+|||+.+ ..|+||||||+||+++.++. +||+|||+++.....
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~  159 (307)
T 2eva_A           80 YAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH  159 (307)
T ss_dssp             CCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-------
T ss_pred             cCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc
Confidence            9999999999975432 35788999999999999999999932 13999999999999998876 799999998765432


Q ss_pred             hh------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          459 EM------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       459 ~~------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                      ..      .+.+|+......++.++|||||||++|||+||+.||................+..          .......
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  229 (307)
T 2eva_A          160 MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTR----------PPLIKNL  229 (307)
T ss_dssp             -----CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCC----------CCCBTTC
T ss_pred             cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCC----------CCccccc
Confidence            21      2233343344457889999999999999999999996544443333322222211          0112223


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCC
Q 007711          533 LETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGA  572 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~  572 (592)
                      +..+.+++.+||+.||++|||+.|+++.|+.+....+...
T Consensus       230 ~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~~  269 (307)
T 2eva_A          230 PKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGAD  269 (307)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCCTT
T ss_pred             CHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccCCC
Confidence            4578999999999999999999999999999987654433

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=9.7e-39  Score=326.47  Aligned_cols=236  Identities=22%  Similarity=0.338  Sum_probs=189.4

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+. .+|..||||++......   ....+.+.+|+++++.++||||+++++++...+  ..++||
T Consensus        19 ~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~--~~~lv~   93 (328)
T 3fe3_A           19 LLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLN---PTSLQKLFREVRIMKILNHPNIVKLFEVIETEK--TLYLIM   93 (328)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC--EEEEEE
Confidence            457899999999999996 57899999998654322   344567889999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++|+|.+++...  ..+++.....++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.......
T Consensus        94 e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~~--ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~  169 (328)
T 3fe3_A           94 EYASGGEVFDYLVAH--GRMKEKEARSKFRQIVSAVQYCHQKR--IVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGK  169 (328)
T ss_dssp             CCCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCG
T ss_pred             ECCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--EeccCCCHHHEEEcCCCCEEEeeccCceecCCCCc
Confidence            999999999998643  46899999999999999999999998  99999999999999999999999999986543211


Q ss_pred             --hhcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          461 --AATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       461 --~~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                        .......+.+||       .+.++|||||||++|||+||+.||.  +....+.......+....           +..
T Consensus       170 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~--~~~~~~~~~~i~~~~~~~-----------p~~  236 (328)
T 3fe3_A          170 LDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFD--GQNLKELRERVLRGKYRI-----------PFY  236 (328)
T ss_dssp             GGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCCC-----------CTT
T ss_pred             cccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCC--CCCHHHHHHHHHhCCCCC-----------CCC
Confidence              111122333433       3578999999999999999999994  444555555544442221           112


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+..+.+++.+||+.||.+|||++|+++
T Consensus       237 ~s~~~~~li~~~L~~dP~~R~t~~eil~  264 (328)
T 3fe3_A          237 MSTDCENLLKRFLVLNPIKRGTLEQIMK  264 (328)
T ss_dssp             SCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred             CCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            3356889999999999999999999976

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=4.9e-39  Score=330.93  Aligned_cols=247  Identities=21%  Similarity=0.340  Sum_probs=194.3

Q ss_pred             hhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          302 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.||+|+||.||+|+..      ++..||||.+....    .....+.|.+|++++++++||||++++++|...+  .
T Consensus        51 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~  124 (343)
T 1luf_A           51 YVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA----SADMQADFQREAALMAEFDNPNIVKLLGVCAVGK--P  124 (343)
T ss_dssp             EEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC----CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--S
T ss_pred             eeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc----CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCC--c
Confidence            4578999999999999974      34789999885332    2345678999999999999999999999998876  5


Q ss_pred             eEEEEeeCCCCCchhhccccC----------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCC
Q 007711          376 RMMVFEYAPNGTLFEHIHIKE----------------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNS  433 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~----------------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~  433 (592)
                      .++||||+++|+|.+++....                      ...+++..+..++.+++.||+|||+.+  |+||||||
T Consensus       125 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~--ivH~Dlkp  202 (343)
T 1luf_A          125 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK--FVHRDLAT  202 (343)
T ss_dssp             CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSG
T ss_pred             eEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCc
Confidence            699999999999999987532                      156899999999999999999999998  99999999


Q ss_pred             CCeEEcCCCceEEecCCcchhhhhhhhh-----hcccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCC
Q 007711          434 SAVHLTEDYAAKLSDLSFWNEIAMAEMA-----ATSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNG  501 (592)
Q Consensus       434 ~NiLl~~~~~~ki~DfGla~~~~~~~~~-----~~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~  501 (592)
                      +|||+++++.+||+|||+++........     ...+..+.+|      .++.++|||||||++|||+| |+.||..  .
T Consensus       203 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~--~  280 (343)
T 1luf_A          203 RNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG--M  280 (343)
T ss_dssp             GGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT--S
T ss_pred             ceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCC--C
Confidence            9999999999999999999876432210     0111223343      37889999999999999999 9999943  3


Q ss_pred             ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          502 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      ...+.......+..          ...+..++..+.+++.+||+.||++||++.++++.|+++....
T Consensus       281 ~~~~~~~~~~~~~~----------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~  337 (343)
T 1luf_A          281 AHEEVIYYVRDGNI----------LACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERA  337 (343)
T ss_dssp             CHHHHHHHHHTTCC----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC--
T ss_pred             ChHHHHHHHhCCCc----------CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhh
Confidence            33343333332211          1122334467999999999999999999999999999987653

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=2.9e-39  Score=330.66  Aligned_cols=245  Identities=18%  Similarity=0.296  Sum_probs=184.6

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcE----EEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVE----IAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~----vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      .+.+.||+|+||.||+|++. ++..    ||+|.+....    .....++|.+|+.++++++||||++++++|....   
T Consensus        18 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---   90 (327)
T 3poz_A           18 KKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT----SPKANKEILDEAYVMASVDNPHVCRLLGICLTST---   90 (327)
T ss_dssp             EEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-----------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS---
T ss_pred             ccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeeccccc----CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC---
Confidence            34578999999999999964 4444    4566553222    1234578999999999999999999999998754   


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++|+||+++|+|.+++... ...+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++..
T Consensus        91 ~~~v~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~  167 (327)
T 3poz_A           91 VQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEDRR--LVHRDLAARNVLVKTPQHVKITDFGLAKLL  167 (327)
T ss_dssp             EEEEEECCTTCBHHHHHHHS-TTSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEEETTEEEECCTTHHHHH
T ss_pred             eEEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhhCC--eeCCCCChheEEECCCCCEEEccCcceeEc
Confidence            57999999999999998743 456899999999999999999999998  999999999999999999999999999876


Q ss_pred             hhhhhh-----hcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          456 AMAEMA-----ATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       456 ~~~~~~-----~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ......     ...+..+.+||      ++.++|||||||++|||+| |+.||.....  .+........ ...      
T Consensus       168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~~-~~~------  238 (327)
T 3poz_A          168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--SEISSILEKG-ERL------  238 (327)
T ss_dssp             TTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHHHHTT-CCC------
T ss_pred             cCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCH--HHHHHHHHcC-CCC------
Confidence            432211     01112334443      7889999999999999999 9999954322  2222222111 110      


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                         ..+..++..+.+++.+||+.||++||++.|+++.|+.+...
T Consensus       239 ---~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~  279 (327)
T 3poz_A          239 ---PQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             ---CCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred             ---CCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence               11233445789999999999999999999999999998753

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1.1e-38  Score=321.77  Aligned_cols=236  Identities=19%  Similarity=0.304  Sum_probs=186.4

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|.. .++..||||.+.......     .+.+.+|+.++++++||||+++++++...+  ..++||
T Consensus        24 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~   96 (297)
T 3fxz_A           24 RFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK-----KELIINEILVMRENKNPNIVNYLDSYLVGD--ELWVVM   96 (297)
T ss_dssp             CCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSC-----HHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             eeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccH-----HHHHHHHHHHHhcCCCCCCCeEeEEEEECC--EEEEEE
Confidence            457899999999999985 578999999886544322     456889999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++..   ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...... 
T Consensus        97 e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  171 (297)
T 3fxz_A           97 EYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  171 (297)
T ss_dssp             ECCTTCBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             ECCCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhCC--ceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc
Confidence            99999999999864   35899999999999999999999998  9999999999999999999999999987653221 


Q ss_pred             --------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 --------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 --------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                              ..+.+|+......++.++|||||||++|||+||+.||...  ...+...........  .      ...+..
T Consensus       172 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~~~~~~~~~~~--~------~~~~~~  241 (297)
T 3fxz_A          172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE--NPLRALYLIATNGTP--E------LQNPEK  241 (297)
T ss_dssp             CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHHCSC--C------CSCGGG
T ss_pred             ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhCCCC--C------CCCccc
Confidence                    1222333333334788999999999999999999999532  222222222211110  0      011334


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+..+.+++.+||+.||++|||++|+++
T Consensus       242 ~~~~~~~li~~~l~~dp~~Rps~~ell~  269 (297)
T 3fxz_A          242 LSAIFRDFLNRCLEMDVEKRGSAKELLQ  269 (297)
T ss_dssp             SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence            4567899999999999999999999875

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=5.6e-39  Score=333.76  Aligned_cols=248  Identities=22%  Similarity=0.296  Sum_probs=193.6

Q ss_pred             hhhhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP  373 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  373 (592)
                      ..+.+.||+|+||.||+|++.      ++..||||.+....    ......+|.+|+.++++++||||+++++++.... 
T Consensus        73 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~-  147 (367)
T 3l9p_A           73 ITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC----SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL-  147 (367)
T ss_dssp             EEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSC----CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-
T ss_pred             eEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccccc----ChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC-
Confidence            345688999999999999953      45689999875322    2344567999999999999999999999998876 


Q ss_pred             cceEEEEeeCCCCCchhhccccC-----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC---ceE
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKE-----SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAK  445 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~-----~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~---~~k  445 (592)
                       ..++||||+++|+|.+++....     ...+++..++.++.+++.||+|||+.+  |+||||||+|||++.++   .+|
T Consensus       148 -~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~~~~~~~k  224 (367)
T 3l9p_A          148 -PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH--FIHRDIAARNCLLTCPGPGRVAK  224 (367)
T ss_dssp             -SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEESCSSTTCCEE
T ss_pred             -CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCC--eeCCCCChhhEEEecCCCCceEE
Confidence             5699999999999999987532     246899999999999999999999999  99999999999999544   599


Q ss_pred             EecCCcchhhhhhhhh-----hcccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcC
Q 007711          446 LSDLSFWNEIAMAEMA-----ATSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG  513 (592)
Q Consensus       446 i~DfGla~~~~~~~~~-----~~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~  513 (592)
                      |+|||+++........     ...+..+++|      .++.++|||||||++|||+| |+.||..  ....+.......+
T Consensus       225 L~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~--~~~~~~~~~i~~~  302 (367)
T 3l9p_A          225 IGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPS--KSNQEVLEFVTSG  302 (367)
T ss_dssp             ECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT--CCHHHHHHHHHTT
T ss_pred             ECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcC
Confidence            9999999866432211     1111233444      37889999999999999998 9999943  3344444333332


Q ss_pred             CCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ..          ...+..++..+.+++.+||+.||++||++.+|++.|+.+...
T Consensus       303 ~~----------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~  346 (367)
T 3l9p_A          303 GR----------MDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  346 (367)
T ss_dssp             CC----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CC----------CCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence            11          111223445789999999999999999999999999998765

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.1e-38  Score=321.18  Aligned_cols=252  Identities=17%  Similarity=0.319  Sum_probs=195.6

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|+. .++..||+|.+.......  ....+.|.+|+.++++++||||+++++++...+  ..++|
T Consensus        14 ~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~--~~~lv   89 (294)
T 4eqm_A           14 KIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREK--EETLKRFEREVHNSSQLSHQNIVSMIDVDEEDD--CYYLV   89 (294)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCC--HHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCcccc--HHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCC--eEEEE
Confidence            3457899999999999995 468899999886543322  345678999999999999999999999998876  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++......
T Consensus        90 ~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  165 (294)
T 4eqm_A           90 MEYIEGPTLSEYIESH--GPLSVDTAINFTNQILDGIKHAHDMR--IVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS  165 (294)
T ss_dssp             EECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEECCCSSSTTC----
T ss_pred             EeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEEEeCCCcccccccc
Confidence            9999999999998643  46899999999999999999999999  9999999999999999999999999998664322


Q ss_pred             h----------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          460 M----------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       460 ~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      .          .+.+|+......++.++||||||+++|||+||+.||..  ....+...........  ...    ....
T Consensus       166 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~--~~~~~~~~~~~~~~~~--~~~----~~~~  237 (294)
T 4eqm_A          166 LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNG--ETAVSIAIKHIQDSVP--NVT----TDVR  237 (294)
T ss_dssp             ---------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCS--SCHHHHHHHHHSSCCC--CHH----HHSC
T ss_pred             ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC--CChHHHHHHHhhccCC--Ccc----hhcc
Confidence            1          11222222233468899999999999999999999943  3333333333322111  000    0112


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHhhhCCC
Q 007711          530 EEQLETLGELIKSCVRADPEKRP-TMRDIAAILREITGIT  568 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RP-s~~ev~~~L~~i~~~~  568 (592)
                      ...+..+.+++.+||+.||++|| +++++.+.|+.++...
T Consensus       238 ~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~  277 (294)
T 4eqm_A          238 KDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHEN  277 (294)
T ss_dssp             TTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSS
T ss_pred             cCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhc
Confidence            23346789999999999999998 9999999999987654

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=352.14  Aligned_cols=241  Identities=20%  Similarity=0.290  Sum_probs=190.4

Q ss_pred             ccCcCCCeEEEEEEeC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          305 VIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       305 ~lG~G~~g~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .||+|+||.||+|.+.   ++..||||++......    ...++|.+|+++|++++|||||+++|+|...   ..++|||
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~----~~~~~~~~E~~il~~l~hpniv~l~~~~~~~---~~~lv~E  415 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEK----ADTEEMMREAQIMHQLDNPYIVRLIGVCQAE---ALMLVME  415 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSS----TTHHHHHHHHHHHTTCCCTTBCCEEEEEESS---SEEEEEE
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCCh----HHHHHHHHHHHHHHhCCCCCEeeEEEEeccC---CeEEEEE
Confidence            7999999999999874   4667999988654222    2457899999999999999999999999763   4689999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA  461 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~~  461 (592)
                      ||++|+|.+++.. ....+++..+..|+.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++........
T Consensus       416 ~~~~g~L~~~l~~-~~~~l~~~~~~~i~~qi~~~L~~LH~~~--iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~  492 (613)
T 2ozo_A          416 MAGGGPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEEKN--FVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSY  492 (613)
T ss_dssp             CCTTCBHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEEETTEEEECCCSTTTTCC-----
T ss_pred             eCCCCcHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHCC--EEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCce
Confidence            9999999999864 3456899999999999999999999998  999999999999999999999999999876422111


Q ss_pred             ------hcccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          462 ------ATSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       462 ------~~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                            ...+..+++|      .++.++|||||||++|||+| |+.||....  ..+.......+. .         ...
T Consensus       493 ~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~--~~~~~~~i~~~~-~---------~~~  560 (613)
T 2ozo_A          493 YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--GPEVMAFIEQGK-R---------MEC  560 (613)
T ss_dssp             ---------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--SHHHHHHHHTTC-C---------CCC
T ss_pred             eeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHcCC-C---------CCC
Confidence                  1111234444      47889999999999999998 999995332  233333332221 1         122


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      +..++.++.+++.+||+.||++||+|.+|++.|+.+...
T Consensus       561 p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~  599 (613)
T 2ozo_A          561 PPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  599 (613)
T ss_dssp             CTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence            334556899999999999999999999999999998543

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.2e-39  Score=334.99  Aligned_cols=249  Identities=24%  Similarity=0.364  Sum_probs=183.1

Q ss_pred             hhcccCcCCCeEEEEEEeC--CC--cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          302 FSNVIGSSPIGTVYKGTLS--NG--VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~--~~--~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.||+|+||.||+|++.  ++  ..+|||.+....    .....++|.+|+.++++++||||++++++|...+. ..+
T Consensus        93 ~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~-~~~  167 (373)
T 3c1x_A           93 FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT----DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SPL  167 (373)
T ss_dssp             EEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCS----CSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSS-CCE
T ss_pred             cCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCC----CHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCC-CeE
Confidence            4578999999999999863  32  356777764321    12346789999999999999999999999865432 468


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +||||+++|+|.++++. ....+++..+..++.|++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....
T Consensus       168 lv~e~~~~g~L~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~  244 (373)
T 3c1x_A          168 VVLPYMKHGDLRNFIRN-ETHNPTVKDLIGFGLQVAKGMKFLASKK--FVHRDLAARNCMLDEKFTVKVADFGLARDMYD  244 (373)
T ss_dssp             EEEECCTTCBHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred             EEEECCCCCCHHHHHhh-cccCCCHHHHHHHHHHHHHHHHHHHHCC--EecCccchheEEECCCCCEEEeeccccccccc
Confidence            99999999999999963 3456889999999999999999999998  99999999999999999999999999986532


Q ss_pred             hhh-------------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          458 AEM-------------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       458 ~~~-------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ...             .+.+++......++.++|||||||++|||+| |..||......  +.......+..        
T Consensus       245 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~--~~~~~~~~~~~--------  314 (373)
T 3c1x_A          245 KEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--DITVYLLQGRR--------  314 (373)
T ss_dssp             -------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSS--CHHHHHHTTCC--------
T ss_pred             cccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHH--HHHHHHHcCCC--------
Confidence            211             1222222222347889999999999999999 67777433221  11122222211        


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCC
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  570 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~  570 (592)
                        ...+..++..+.+++.+||+.||++||++.|+++.|+++......
T Consensus       315 --~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~  359 (373)
T 3c1x_A          315 --LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG  359 (373)
T ss_dssp             --CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCS
T ss_pred             --CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhccc
Confidence              011223446799999999999999999999999999999865443

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-38  Score=328.68  Aligned_cols=255  Identities=20%  Similarity=0.299  Sum_probs=190.6

Q ss_pred             HhhhhcccCcCCCeEEEEEEe------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecC
Q 007711          299 CEDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEE  371 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~  371 (592)
                      ...+.+.||+|+||.||+|..      .++..||||.+.....    ....+.+.+|++++.++ +||||+++++++...
T Consensus        46 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  121 (344)
T 1rjb_A           46 NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD----SSEREALMSELKMMTQLGSHENIVNLLGACTLS  121 (344)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccC----HHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeC
Confidence            344568999999999999996      2456899998864322    12346789999999999 899999999999887


Q ss_pred             CCcceEEEEeeCCCCCchhhccccCC---------------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeC
Q 007711          372 EPFTRMMVFEYAPNGTLFEHIHIKES---------------------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNY  430 (592)
Q Consensus       372 ~~~~~~lv~Ey~~~gsL~~~l~~~~~---------------------~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~d  430 (592)
                      +  ..++||||+++|+|.+++.....                     ..+++..+..++.+++.||+|||+.+  |+|||
T Consensus       122 ~--~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~D  197 (344)
T 1rjb_A          122 G--PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS--CVHRD  197 (344)
T ss_dssp             S--SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT--EEETT
T ss_pred             C--ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCC--cccCC
Confidence            6  56999999999999999975322                     24799999999999999999999998  99999


Q ss_pred             cCCCCeEEcCCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccC
Q 007711          431 LNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLV  498 (592)
Q Consensus       431 Lk~~NiLl~~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~  498 (592)
                      |||+||+++.++.+||+|||+++.......           .+.+|+......++.++|||||||++|||+| |+.||..
T Consensus       198 ikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~  277 (344)
T 1rjb_A          198 LAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPG  277 (344)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred             CChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCccc
Confidence            999999999999999999999986643221           1222222222337889999999999999999 9999954


Q ss_pred             CCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCC
Q 007711          499 DNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGA  572 (592)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~  572 (592)
                      ....  .............         ..+..++..+.+++.+||+.||.+||++.|+++.|+.++...++..
T Consensus       278 ~~~~--~~~~~~~~~~~~~---------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~~  340 (344)
T 1rjb_A          278 IPVD--ANFYKLIQNGFKM---------DQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAEEAM  340 (344)
T ss_dssp             CCCS--HHHHHHHHTTCCC---------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-------
T ss_pred             CCcH--HHHHHHHhcCCCC---------CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHHHHH
Confidence            3322  2222222221110         1122334679999999999999999999999999999987665543

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=1.2e-38  Score=318.40  Aligned_cols=250  Identities=23%  Similarity=0.369  Sum_probs=194.3

Q ss_pred             hhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ..+.+.||+|+||.||+|...++..||+|.+.....      ..+.|.+|++++++++||||+++++++...   ..++|
T Consensus        15 y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---~~~~v   85 (279)
T 1qpc_A           15 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM------SPDAFLAEANLMKQLQHQRLVRLYAVVTQE---PIYII   85 (279)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS---SCEEE
T ss_pred             hhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc------cHHHHHHHHHHHHhCCCcCcceEEEEEcCC---CcEEE
Confidence            345688999999999999998888999998854321      246799999999999999999999998754   36899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++|+|.+++.......+++..+..++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++......
T Consensus        86 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~  163 (279)
T 1qpc_A           86 TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN--YIHRDLRAANILVSDTLSCKIADFGLARLIEDNE  163 (279)
T ss_dssp             EECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTSCEEECCCTTCEECSSSC
T ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHhhEEEcCCCCEEECCCcccccccCcc
Confidence            99999999999997543346899999999999999999999999  9999999999999999999999999988654321


Q ss_pred             hh----hcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          460 MA----ATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       460 ~~----~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      ..    ...+..+.+||      ++.++||||||+++|||+| |+.||..  ....+.......+..          ...
T Consensus       164 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~--~~~~~~~~~~~~~~~----------~~~  231 (279)
T 1qpc_A          164 YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQNLERGYR----------MVR  231 (279)
T ss_dssp             EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTT--CCHHHHHHHHHTTCC----------CCC
T ss_pred             cccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcc--cCHHHHHHHHhcccC----------CCC
Confidence            11    01112234443      5788999999999999999 9999943  333333333332211          011


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCC
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGA  572 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~  572 (592)
                      +...+..+.+++.+||+.||++|||+.++++.|+++........
T Consensus       232 ~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~  275 (279)
T 1qpc_A          232 PDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQY  275 (279)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC----
T ss_pred             cccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccCCC
Confidence            22334679999999999999999999999999999986654433

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=8e-39  Score=321.45  Aligned_cols=250  Identities=24%  Similarity=0.434  Sum_probs=185.2

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ...+.+.||+|+||.||+|++.+  .+|+|++.....   .....+.|.+|++++++++|+||+++++++...   ..++
T Consensus        25 ~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~l   96 (289)
T 3og7_A           25 QITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAP---TPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP---QLAI   96 (289)
T ss_dssp             SCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS---SCEE
T ss_pred             ceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCC---CHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCC---ccEE
Confidence            34456889999999999998643  589998865432   234567899999999999999999999987543   4589


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||||+++++|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++.....
T Consensus        97 v~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~lH~~~--i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  173 (289)
T 3og7_A           97 VTQWCEGSSLYHHLHAS-ETKFEMKKLIDIARQTARGMDYLHAKS--IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRW  173 (289)
T ss_dssp             EEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEETTTEEEECCCC--------
T ss_pred             EEEecCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhCC--cccccCccceEEECCCCCEEEccceeccccccc
Confidence            99999999999998643 456899999999999999999999998  999999999999999999999999998765421


Q ss_pred             h-----------hhhcccccCC---CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          459 E-----------MAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       459 ~-----------~~~~~~~~~~---~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      .           ..+.+|+...   ...++.++||||||+++|||+||+.||.... .............      ..+.
T Consensus       174 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-~~~~~~~~~~~~~------~~~~  246 (289)
T 3og7_A          174 SGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNIN-NRDQIIEMVGRGS------LSPD  246 (289)
T ss_dssp             ----------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCC-CHHHHHHHHHHTS------CCCC
T ss_pred             cccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccc-hHHHHHHHhcccc------cCcc
Confidence            1           1122222221   2335778999999999999999999995332 2222222222221      1112


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      .......++..+.+++.+||+.||++||++.|+++.|+++.+
T Consensus       247 ~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          247 LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             TTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             hhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence            222233455679999999999999999999999999999864

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.5e-38  Score=320.94  Aligned_cols=244  Identities=23%  Similarity=0.367  Sum_probs=183.1

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc--CCCCceeeeeEEEecCC--Ccce
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK--VNHKNFVNLIGFCEEEE--PFTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~--l~H~niv~l~g~~~~~~--~~~~  376 (592)
                      .+.+.||+|+||.||+|++ ++..||||++...        ....+.+|.+++..  ++||||+++++++....  ....
T Consensus        11 ~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--------~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~   81 (301)
T 3q4u_A           11 TLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR--------DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQL   81 (301)
T ss_dssp             EEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG--------GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred             EEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc--------cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCcee
Confidence            3458899999999999998 6889999987532        23456667777666  79999999999976532  1246


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCeEeeCcCCCCeEEcCCCceEEec
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH--------QLNPPIAHNYLNSSAVHLTEDYAAKLSD  448 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH--------~~~~~ivH~dLk~~NiLl~~~~~~ki~D  448 (592)
                      ++||||+++|+|.++++.   ..+++..+.+++.+++.||+|||        +.+  |+||||||+|||++.++.+||+|
T Consensus        82 ~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~--ivH~Dlkp~Nill~~~~~~kl~D  156 (301)
T 3q4u_A           82 WLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPA--IAHRDLKSKNILVKKNGQCCIAD  156 (301)
T ss_dssp             EEEECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCE--EECSCCCGGGEEECTTSCEEECC
T ss_pred             EEehhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCC--eecCCCChHhEEEcCCCCEEEee
Confidence            899999999999999953   46899999999999999999999        777  99999999999999999999999


Q ss_pred             CCcchhhhhhhhhh-------cccccCCCCC------------CCCCCcchhhHHHHHHHHhC----------CCcccCC
Q 007711          449 LSFWNEIAMAEMAA-------TSKKLSSAPS------------ASLESNVYNFGVLLFEMVTG----------RLPYLVD  499 (592)
Q Consensus       449 fGla~~~~~~~~~~-------~~~~~~~~~~------------~s~ksDVwSfGvvl~El~tG----------~~P~~~~  499 (592)
                      ||+++.........       ..+..+.+||            ++.++|||||||++|||+||          +.||...
T Consensus       157 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~  236 (301)
T 3q4u_A          157 LGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDV  236 (301)
T ss_dssp             CTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTT
T ss_pred             CCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccccccccccccc
Confidence            99987653222110       1112333433            23689999999999999999          8888532


Q ss_pred             C---CChHHHHHHHhcCCCCCccccCCCCC--CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          500 N---GSLEDWAADYLSGVQPLQQFVDPTLS--SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       500 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      .   ............. ..     .+...  .....++..+.+++.+||+.||++|||+.|+++.|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          237 VPNDPSFEDMRKVVCVD-QQ-----RPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             SCSSCCHHHHHHHHTTS-CC-----CCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCCCcchhhhhHHHhcc-CC-----CCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence            2   1222222221111 11     11111  12345678899999999999999999999999999986

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=6e-39  Score=321.89  Aligned_cols=256  Identities=21%  Similarity=0.329  Sum_probs=199.4

Q ss_pred             CCHHHHHHHHhhhhcccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEE
Q 007711          290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFC  368 (592)
Q Consensus       290 ~~~~el~~~~~~~~~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~  368 (592)
                      +...++......+.+.||+|+||.||+|.... +..||+|.+....      ...+.|.+|++++++++||||+++++++
T Consensus         5 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~------~~~~~~~~E~~~l~~l~h~~i~~~~~~~   78 (288)
T 3kfa_A            5 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT------MEVEEFLKEAAVMKEIKHPNLVQLLGVC   78 (288)
T ss_dssp             CCTTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS------THHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             hhcccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH------HHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            33334444445566899999999999999754 7889999885322      2356799999999999999999999999


Q ss_pred             ecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEec
Q 007711          369 EEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD  448 (592)
Q Consensus       369 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~D  448 (592)
                      ....  ..++||||+++|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|
T Consensus        79 ~~~~--~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dikp~Nil~~~~~~~~l~D  154 (288)
T 3kfa_A           79 TREP--PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVAD  154 (288)
T ss_dssp             CSSS--SEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHT--CCCSCCSGGGEEECGGGCEEECC
T ss_pred             ccCC--CEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCC--ccCCCCCcceEEEcCCCCEEEcc
Confidence            8776  6799999999999999997655667999999999999999999999998  99999999999999999999999


Q ss_pred             CCcchhhhhhhh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCC
Q 007711          449 LSFWNEIAMAEM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL  517 (592)
Q Consensus       449 fGla~~~~~~~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~  517 (592)
                      ||+++.......          .+.+|+......++.++||||||+++|||+| |+.||....  ..+........ .. 
T Consensus       155 fg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~--~~~~~~~~~~~-~~-  230 (288)
T 3kfa_A          155 FGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEKD-YR-  230 (288)
T ss_dssp             CCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTT-CC-
T ss_pred             CccceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHhcc-CC-
Confidence            999986542211          1222332222346889999999999999999 999995332  22222222211 00 


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                              ...+..++..+.+++.+||+.||++||++.|+++.|+.+...
T Consensus       231 --------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~  272 (288)
T 3kfa_A          231 --------MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  272 (288)
T ss_dssp             --------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             --------CCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence                    011223346799999999999999999999999999988653

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=8.3e-38  Score=309.91  Aligned_cols=243  Identities=22%  Similarity=0.348  Sum_probs=193.9

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||.||+|...++..||+|.+.....      ..+++.+|++++++++||||+++++++...+  ..++||
T Consensus        11 ~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   82 (267)
T 3t9t_A           11 TFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM------SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA--PICLVT   82 (267)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB------CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--SCEEEE
T ss_pred             eeeeEecCCCceeEEEEEecCCCeEEEEEccccCC------CHHHHHHHHHHHHhCCCCCEeeEEEEEccCC--CeEEEE
Confidence            34578999999999999998888999998864332      2367999999999999999999999998876  569999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.......
T Consensus        83 e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~  159 (267)
T 3t9t_A           83 EFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEAC--VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY  159 (267)
T ss_dssp             CCCTTCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred             eCCCCCcHHHHHhhC-cccCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCchheEEECCCCCEEEcccccccccccccc
Confidence            999999999998643 356899999999999999999999999  99999999999999999999999999886532221


Q ss_pred             ----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          461 ----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       461 ----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                                .+.+|+......++.++||||||+++|||+| |+.||..  ....+.......+...    .      .+
T Consensus       160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~~i~~~~~~----~------~~  227 (267)
T 3t9t_A          160 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN--RSNSEVVEDISTGFRL----Y------KP  227 (267)
T ss_dssp             HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHHHTTCCC----C------CC
T ss_pred             cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCC--CCHHHHHHHHhcCCcC----C------CC
Confidence                      1222222222346889999999999999999 8999943  3344444433332111    0      11


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      ...+..+.+++.+||+.||++||++.++++.|+++..
T Consensus       228 ~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~  264 (267)
T 3t9t_A          228 RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  264 (267)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            2233578999999999999999999999999999864

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=317.50  Aligned_cols=258  Identities=19%  Similarity=0.266  Sum_probs=197.2

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. ++..||||++......    ...+.+.+|++++++++||||+++++++........++||
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A           13 LSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL----RPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGG----SCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEecCCCCeEEEEEEECCCCcEEEEEEecccccc----chHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            4578999999999999975 4889999998643322    1246788999999999999999999999876544568999


Q ss_pred             eeCCCCCchhhccccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE----cCCCceEEecCCcchhh
Q 007711          381 EYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL----TEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl----~~~~~~ki~DfGla~~~  455 (592)
                      ||+++|+|.+++.... ...+++..+..++.+++.||+|||+.+  |+||||||+|||+    +.++.+||+|||+++..
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~  166 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG--IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAREL  166 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEEECTTSCEEEEECCCTTCEEC
T ss_pred             eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHEEEeccCCCCceEEEccCCCceec
Confidence            9999999999997542 334899999999999999999999999  9999999999999    88889999999999865


Q ss_pred             hhhh--------hhhcccccCC--------CCCCCCCCcchhhHHHHHHHHhCCCcccCCCC--ChHHHHHHHhcCCCC-
Q 007711          456 AMAE--------MAATSKKLSS--------APSASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQP-  516 (592)
Q Consensus       456 ~~~~--------~~~~~~~~~~--------~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~-  516 (592)
                      ....        ..+.+|+...        ...++.++|||||||++|||+||+.||.....  ...+.......+... 
T Consensus       167 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~  246 (319)
T 4euu_A          167 EDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSG  246 (319)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTT
T ss_pred             CCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcc
Confidence            4321        1223333221        34568899999999999999999999964322  223333333322110 


Q ss_pred             -Ccccc------------CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          517 -LQQFV------------DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       517 -~~~~~------------~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                       ...+.            -+............+.+++.+||+.||++|||++|+++...+..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~  308 (319)
T 4euu_A          247 AISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL  308 (319)
T ss_dssp             CCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHT
T ss_pred             cchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHh
Confidence             00000            01112345677888999999999999999999999999888764

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=3.1e-39  Score=335.50  Aligned_cols=259  Identities=13%  Similarity=0.153  Sum_probs=187.1

Q ss_pred             hhhcccCcCCCeEEEEEEeCC------CcEEEEEEeeecccCCCc------hhHHHHHHHHHHHHhcCCCCceeeeeEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWP------KNLEVQFRKKIDTLSKVNHKNFVNLIGFC  368 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~------~~~vavk~~~~~~~~~~~------~~~~~~f~~e~~~l~~l~H~niv~l~g~~  368 (592)
                      .+.+.||+|+||.||+|.+..      +..||||++.........      ......+.+|+..++.++|+||+++++++
T Consensus        38 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~  117 (364)
T 3op5_A           38 KVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSG  117 (364)
T ss_dssp             EEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEE
T ss_pred             EEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeee
Confidence            346889999999999999754      478999987543211000      00012244566677888999999999998


Q ss_pred             ecCCC--cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc--CCCce
Q 007711          369 EEEEP--FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT--EDYAA  444 (592)
Q Consensus       369 ~~~~~--~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~--~~~~~  444 (592)
                      .....  ...++||||+ +|+|.+++.. ....+++..+..|+.|++.||+|||+.+  |+||||||+|||++  .++.+
T Consensus       118 ~~~~~~~~~~~lv~e~~-g~~L~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~--iiHrDlkp~Nill~~~~~~~~  193 (364)
T 3op5_A          118 LHDKNGKSYRFMIMDRF-GSDLQKIYEA-NAKRFSRKTVLQLSLRILDILEYIHEHE--YVHGDIKASNLLLNYKNPDQV  193 (364)
T ss_dssp             EEEETTEEEEEEEEECE-EEEHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEESSCTTCE
T ss_pred             eeccCCcceEEEEEeCC-CCCHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCC--eEEecCCHHHEEEecCCCCeE
Confidence            76421  2478999999 9999999864 3457999999999999999999999998  99999999999999  88999


Q ss_pred             EEecCCcchhhhhhhh----------------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHH--
Q 007711          445 KLSDLSFWNEIAMAEM----------------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDW--  506 (592)
Q Consensus       445 ki~DfGla~~~~~~~~----------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~--  506 (592)
                      ||+|||+++.+.....                .+.+++......++.++|||||||++|||+||+.||..........  
T Consensus       194 kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~  273 (364)
T 3op5_A          194 YLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRD  273 (364)
T ss_dssp             EECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHH
T ss_pred             EEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHH
Confidence            9999999976543221                2222333333347889999999999999999999996433322111  


Q ss_pred             HHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          507 AADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ......  ..+..+.++.+.  ...++.++.+++..||+.||++||++.+|++.|++++..
T Consensus       274 ~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~  330 (364)
T 3op5_A          274 SKIRYR--ENIASLMDKCFP--AANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKA  330 (364)
T ss_dssp             HHHHHH--HCHHHHHHHHSC--TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHhh--hhHHHHHHHhcc--cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence            111111  111222221111  112245789999999999999999999999999998764

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=2.7e-38  Score=350.35  Aligned_cols=240  Identities=23%  Similarity=0.315  Sum_probs=189.6

Q ss_pred             cccCcCCCeEEEEEEeC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          304 NVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.||+|+||.||+|.+.   .+..||||++......   ....++|.+|+++|++++|||||+++++|...   ..++||
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~---~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~---~~~lv~  448 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAND---PALKDELLAEANVMQQLDNPYIVRMIGICEAE---SWMLVM  448 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGC---GGGHHHHHHHHHHHHHCCCTTBCCEEEEEESS---SEEEEE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC---CEEEEE
Confidence            47999999999999763   4678999988654322   23467899999999999999999999999654   468999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      |||++|+|.+++..  ...+++..+..|+.+|+.||+|||+.+  |+||||||+|||+++++.+||+|||+++.......
T Consensus       449 E~~~~g~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~yLH~~~--iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~  524 (635)
T 4fl3_A          449 EMAELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLEESN--FVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN  524 (635)
T ss_dssp             ECCTTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEEETTEEEECCTTHHHHTTC---
T ss_pred             EccCCCCHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHHHHCC--EeCCCCChHhEEEeCCCCEEEEEcCCccccccCcc
Confidence            99999999999963  356899999999999999999999998  99999999999999999999999999987643221


Q ss_pred             h------hcccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          461 A------ATSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       461 ~------~~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      .      ...+..+.+|      .++.++|||||||++|||+| |+.||..  ....+.......+. .         ..
T Consensus       525 ~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~--~~~~~~~~~i~~~~-~---------~~  592 (635)
T 4fl3_A          525 YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRG--MKGSEVTAMLEKGE-R---------MG  592 (635)
T ss_dssp             ----------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT--CCHHHHHHHHHTTC-C---------CC
T ss_pred             ccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCC-C---------CC
Confidence            1      0111223444      47889999999999999999 9999943  33333333332221 1         11


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      .+..++.++.+++.+||+.||++||++.+|++.|+++.
T Consensus       593 ~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~  630 (635)
T 4fl3_A          593 CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY  630 (635)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            23345568999999999999999999999999999875

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=5e-39  Score=326.41  Aligned_cols=252  Identities=21%  Similarity=0.316  Sum_probs=195.0

Q ss_pred             HhhhhcccCcCCCeEEEEEEe------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecC
Q 007711          299 CEDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEE  371 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~  371 (592)
                      ...+.+.||+|+||.||+|++      .++..||||.+....    .....+.+.+|+++++++ +||||+++++++...
T Consensus        24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   99 (313)
T 1t46_A           24 RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA----HLTEREALMSELKVLSYLGNHMNIVNLLGACTIG   99 (313)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch----hHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecC
Confidence            344568999999999999985      346789999885332    123457899999999999 999999999999887


Q ss_pred             CCcceEEEEeeCCCCCchhhccccCC----------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCC
Q 007711          372 EPFTRMMVFEYAPNGTLFEHIHIKES----------------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSA  435 (592)
Q Consensus       372 ~~~~~~lv~Ey~~~gsL~~~l~~~~~----------------~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~N  435 (592)
                      +  ..++||||+++|+|.+++.....                ..+++..+.+++.+++.||+|||+.+  |+||||||+|
T Consensus       100 ~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~N  175 (313)
T 1t46_A          100 G--PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN--CIHRDLAARN  175 (313)
T ss_dssp             S--SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGG
T ss_pred             C--CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCccce
Confidence            7  56999999999999999875432                24899999999999999999999998  9999999999


Q ss_pred             eEEcCCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCCh
Q 007711          436 VHLTEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSL  503 (592)
Q Consensus       436 iLl~~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~  503 (592)
                      |+++.++.+||+|||+++.......           .+.+|+......++.++||||||+++|||+| |+.||...... 
T Consensus       176 il~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-  254 (313)
T 1t46_A          176 ILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVD-  254 (313)
T ss_dssp             EEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSS-
T ss_pred             EEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccch-
Confidence            9999999999999999886643321           1222222222347889999999999999999 99999543322 


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          504 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                       ............  .       ..+...+..+.+++.+||+.||.+||++.|+++.|++++....
T Consensus       255 -~~~~~~~~~~~~--~-------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~  310 (313)
T 1t46_A          255 -SKFYKMIKEGFR--M-------LSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISEST  310 (313)
T ss_dssp             -HHHHHHHHHTCC--C-------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTC
T ss_pred             -hHHHHHhccCCC--C-------CCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHhh
Confidence             112222211110  0       0112234578999999999999999999999999999876543

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=7.1e-39  Score=327.04  Aligned_cols=252  Identities=20%  Similarity=0.312  Sum_probs=184.0

Q ss_pred             hhhhcccCcCCCeEEEEEEeCCC----cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc-
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSNG----VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF-  374 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~~----~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~-  374 (592)
                      +.+.+.||+|+||.||+|+....    ..||||.+......   ....++|.+|++++++++||||+++++++...... 
T Consensus        25 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  101 (323)
T 3qup_A           25 FTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIA---SSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKG  101 (323)
T ss_dssp             CEEEEEEEEETTEEEEEEEC-------CEEEEEEC---------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC----
T ss_pred             eEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccC---HHHHHHHHHHHHHHHHCCCCceehhhceeecccccc
Confidence            44568999999999999996543    27899988644322   23467899999999999999999999999876421 


Q ss_pred             ---ceEEEEeeCCCCCchhhccccC----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEe
Q 007711          375 ---TRMMVFEYAPNGTLFEHIHIKE----SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS  447 (592)
Q Consensus       375 ---~~~lv~Ey~~~gsL~~~l~~~~----~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~  447 (592)
                         ..++|+||+++|+|.+++....    ...+++..+..++.+++.||+|||+.+  |+||||||+|||+++++.+||+
T Consensus       102 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~--ivH~Dikp~NIli~~~~~~kl~  179 (323)
T 3qup_A          102 RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRN--FIHRDLAARNCMLAEDMTVCVA  179 (323)
T ss_dssp             ---CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECTTSCEEEC
T ss_pred             CCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCC--cccCCCCcceEEEcCCCCEEEe
Confidence               2389999999999999886432    235899999999999999999999998  9999999999999999999999


Q ss_pred             cCCcchhhhhhhhh-----hcccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCC
Q 007711          448 DLSFWNEIAMAEMA-----ATSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ  515 (592)
Q Consensus       448 DfGla~~~~~~~~~-----~~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~  515 (592)
                      |||+++........     ...+..+.+|      .++.++|||||||++|||+| |+.||....  ..+.......+..
T Consensus       180 Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~--~~~~~~~~~~~~~  257 (323)
T 3qup_A          180 DFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIE--NAEIYNYLIGGNR  257 (323)
T ss_dssp             CCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHHHTTCC
T ss_pred             eccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccC--hHHHHHHHhcCCC
Confidence            99999876432211     0111223343      37889999999999999999 999995322  2222222222211


Q ss_pred             CCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          516 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                                ...+...+..+.+++.+||+.||++|||+.++++.|++++...
T Consensus       258 ----------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~  300 (323)
T 3qup_A          258 ----------LKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHL  300 (323)
T ss_dssp             ----------CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             ----------CCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence                      1112234467999999999999999999999999999998654

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=6.1e-39  Score=332.43  Aligned_cols=249  Identities=18%  Similarity=0.296  Sum_probs=190.9

Q ss_pred             hhhhcccCcCCCeEEEEEEe------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCC
Q 007711          300 EDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE  372 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~  372 (592)
                      ..+.+.||+|+||.||+|++      .+++.||||++....    .....+.|.+|++++.++ +||||++++++|...+
T Consensus        24 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~   99 (359)
T 3vhe_A           24 LKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA----THSEHRALMSELKILIHIGHHLNVVNLLGACTKPG   99 (359)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT
T ss_pred             eeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcC----CHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCC
Confidence            34468999999999999984      245789999885332    233456799999999999 7999999999998755


Q ss_pred             CcceEEEEeeCCCCCchhhccccCC-------------------------------------------------------
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKES-------------------------------------------------------  397 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~~-------------------------------------------------------  397 (592)
                      . ..++||||+++|+|.++++....                                                       
T Consensus       100 ~-~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (359)
T 3vhe_A          100 G-PLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEE  178 (359)
T ss_dssp             S-CCEEEEECCTTEEHHHHHHTTTTSBCSCC-------------------------------------------------
T ss_pred             C-ceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhh
Confidence            2 36899999999999999875321                                                       


Q ss_pred             ---------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh--------
Q 007711          398 ---------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM--------  460 (592)
Q Consensus       398 ---------~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~--------  460 (592)
                               ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.......        
T Consensus       179 ~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~--ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  256 (359)
T 3vhe_A          179 EEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDAR  256 (359)
T ss_dssp             -----CTTTTCBCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CE
T ss_pred             cccccchhccccCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccC
Confidence                     12889999999999999999999998  99999999999999999999999999986532211        


Q ss_pred             ---hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHH
Q 007711          461 ---AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETL  536 (592)
Q Consensus       461 ---~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  536 (592)
                         .+.+|+......++.++|||||||++|||+| |+.||....... . ...........         ..+...+.++
T Consensus       257 ~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-~-~~~~~~~~~~~---------~~~~~~~~~l  325 (359)
T 3vhe_A          257 LPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-E-FCRRLKEGTRM---------RAPDYTTPEM  325 (359)
T ss_dssp             ECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-H-HHHHHHHTCCC---------CCCTTCCHHH
T ss_pred             CCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhH-H-HHHHHHcCCCC---------CCCCCCCHHH
Confidence               1222332223347889999999999999999 999995433221 1 22222111111         1122234578


Q ss_pred             HHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          537 GELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       537 ~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      .+++.+||+.||++|||+.|+++.|++++.
T Consensus       326 ~~li~~~l~~dP~~Rps~~ell~~L~~~~~  355 (359)
T 3vhe_A          326 YQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  355 (359)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCChhhCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999874

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=6.5e-39  Score=327.74  Aligned_cols=244  Identities=19%  Similarity=0.291  Sum_probs=184.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcE----EEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVE----IAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~----vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.+.||+|+||.||+|++. ++..    |++|.+......    ...+.+.+|+.++++++||||++++++|...   ..
T Consensus        17 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~---~~   89 (325)
T 3kex_A           17 KLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGR----QSFQAVTDHMLAIGSLDHAHIVRLLGLCPGS---SL   89 (325)
T ss_dssp             EEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSC----SCBCSCCHHHHHHHTCCCTTBCCEEEEECBS---SE
T ss_pred             eeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccH----HHHHHHHHHHHHHhcCCCCCcCeEEEEEcCC---cc
Confidence            4578999999999999964 4444    666665432211    1224577899999999999999999998643   46


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|+||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus        90 ~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~  166 (325)
T 3kex_A           90 QLVTQYLPLGSLLDHVRQH-RGALGPQLLLNWGVQIAKGMYYLEEHG--MVHRNLAARNVLLKSPSQVQVADFGVADLLP  166 (325)
T ss_dssp             EEEEECCTTCBSHHHHHSS-GGGSCTTHHHHHHHHHHHHHHHHHHTT--CCCSCCSSTTEEESSSSCEEECSCSGGGGSC
T ss_pred             EEEEEeCCCCCHHHHHHHc-cccCCHHHHHHHHHHHHHHHHHHHhCC--CCCCccchheEEECCCCeEEECCCCcccccC
Confidence            8999999999999998643 346888999999999999999999999  9999999999999999999999999998763


Q ss_pred             hhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          457 MAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       457 ~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ....           .+.+++......++.++|||||||++|||+| |+.||.....  .+........ ...       
T Consensus       167 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~-~~~-------  236 (325)
T 3kex_A          167 PDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRL--AEVPDLLEKG-ERL-------  236 (325)
T ss_dssp             CCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCT--THHHHHHHTT-CBC-------
T ss_pred             cccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCH--HHHHHHHHcC-CCC-------
Confidence            2211           1222222222347889999999999999999 9999954332  2222222221 110       


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                        ..+..++..+.+++.+||+.||++||++.|+++.|+.+...
T Consensus       237 --~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~  277 (325)
T 3kex_A          237 --AQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD  277 (325)
T ss_dssp             --CCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred             --CCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence              01112233577899999999999999999999999998654

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=3.2e-38  Score=320.54  Aligned_cols=261  Identities=20%  Similarity=0.269  Sum_probs=193.1

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc--ceE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF--TRM  377 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~--~~~  377 (592)
                      .+.+.||+|+||.||+|+. .+++.||||++......+  ......|.+|++++++++||||+++++++......  ..+
T Consensus        15 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~   92 (311)
T 3ork_A           15 ELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARD--PSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPY   92 (311)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTS--HHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred             EEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCC--HHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccE
Confidence            3468899999999999995 578999999986543322  34456799999999999999999999998765421  248


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +||||+++|+|.++++..  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....
T Consensus        93 lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~  168 (311)
T 3ork_A           93 IVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQNG--IIHRDVKPANIMISATNAVKVMDFGIARAIAD  168 (311)
T ss_dssp             EEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEETTSCEEECCCSCC-----
T ss_pred             EEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--CCcCCCCHHHEEEcCCCCEEEeeccCcccccc
Confidence            999999999999998643  46899999999999999999999998  99999999999999999999999999986543


Q ss_pred             hhh------------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          458 AEM------------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       458 ~~~------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ...            .+.+|+......++.++|||||||++|||+||+.||..  ....+................    
T Consensus       169 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~--~~~~~~~~~~~~~~~~~~~~~----  242 (311)
T 3ork_A          169 SGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG--DSPVSVAYQHVREDPIPPSAR----  242 (311)
T ss_dssp             -------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHCCCCCHHHH----
T ss_pred             cccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC--CChHHHHHHHhcCCCCCcccc----
Confidence            211            12223322333478899999999999999999999943  333444333333321111100    


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHhhhCCCCCCCCCcc
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPT-MRDIAAILREITGITPDGAIPKL  576 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-~~ev~~~L~~i~~~~~~~~~p~~  576 (592)
                         ....+..+.+++.+||+.||++||+ ++++...+..+....+....+.+
T Consensus       243 ---~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~~~~~~~~~~  291 (311)
T 3ork_A          243 ---HEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPEAPKVL  291 (311)
T ss_dssp             ---STTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHTTCCCSSCCCC
T ss_pred             ---cCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhcCCCCCCCccc
Confidence               1123357889999999999999995 55566778777766554443333

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=1.5e-38  Score=322.94  Aligned_cols=247  Identities=22%  Similarity=0.335  Sum_probs=192.8

Q ss_pred             hhhcccCcCCCeEEEEEEe------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc
Q 007711          301 DFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  374 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  374 (592)
                      .+.+.||+|+||.||+|..      .++..||||.+....    .....+.+.+|++++++++||||+++++++...+  
T Consensus        26 ~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--   99 (314)
T 2ivs_A           26 VLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA----SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDG--   99 (314)
T ss_dssp             EEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC----CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--
T ss_pred             eeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC----CHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCC--
Confidence            3458899999999999985      245789999875322    2344578999999999999999999999998876  


Q ss_pred             ceEEEEeeCCCCCchhhccccCC----------------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcC
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKES----------------------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN  432 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~----------------------~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk  432 (592)
                      ..++||||+++|+|.+++.....                      ..+++..+.+++.+++.||+|||+.+  |+|||||
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dik  177 (314)
T 2ivs_A          100 PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMK--LVHRDLA  177 (314)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTT--EECCCCS
T ss_pred             ceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCC--Ccccccc
Confidence            56999999999999999875322                      34889999999999999999999998  9999999


Q ss_pred             CCCeEEcCCCceEEecCCcchhhhhhhhh-----hcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCC
Q 007711          433 SSAVHLTEDYAAKLSDLSFWNEIAMAEMA-----ATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDN  500 (592)
Q Consensus       433 ~~NiLl~~~~~~ki~DfGla~~~~~~~~~-----~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~  500 (592)
                      |+||++++++.+||+|||+++........     ...+..+.+||      ++.++|||||||++|||+| |+.||....
T Consensus       178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~  257 (314)
T 2ivs_A          178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP  257 (314)
T ss_dssp             GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999998765332111     01112244544      6889999999999999999 999995332


Q ss_pred             CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          501 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                        ..+......... .         ...+...+..+.+++.+||+.||++||++.|+++.|++++..
T Consensus       258 --~~~~~~~~~~~~-~---------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  312 (314)
T 2ivs_A          258 --PERLFNLLKTGH-R---------MERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK  312 (314)
T ss_dssp             --GGGHHHHHHTTC-C---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHhhcCC-c---------CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence              222222222211 0         111233446799999999999999999999999999998753

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=326.01  Aligned_cols=245  Identities=18%  Similarity=0.284  Sum_probs=183.8

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEE----EEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEI----AVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~v----avk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.+.||+|+||.||+|.+. ++..+    ++|.+....    .....+.|.+|+.++++++||||++++++|....   .
T Consensus        19 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~----~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~---~   91 (327)
T 3lzb_A           19 KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT----SPKANKEILDEAYVMASVDNPHVCRLLGICLTST---V   91 (327)
T ss_dssp             EEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCS----SCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS---E
T ss_pred             EEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeecccc----CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC---c
Confidence            4578999999999999963 45554    455443221    2234578999999999999999999999998754   5


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|+||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus        92 ~~v~~~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~  168 (327)
T 3lzb_A           92 QLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEDRR--LVHRDLAARNVLVKTPQHVKITDFGLAKLLG  168 (327)
T ss_dssp             EEEECCCSSCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEEETTEEEECCTTC-----
T ss_pred             eEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhhCC--CcCCCCCHHHEEEcCCCCEEEccCcceeEcc
Confidence            8999999999999998643 456899999999999999999999998  9999999999999999999999999998764


Q ss_pred             hhhhhh-----cccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          457 MAEMAA-----TSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       457 ~~~~~~-----~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ......     ..+..+.+|      .++.++|||||||++|||+| |+.||....  ..+........ ..        
T Consensus       169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~--~~~~~~~~~~~-~~--------  237 (327)
T 3lzb_A          169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--ASEISSILEKG-ER--------  237 (327)
T ss_dssp             -----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHHHTT-CC--------
T ss_pred             CccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHcC-CC--------
Confidence            322110     111223444      37889999999999999999 999995432  22222222211 11        


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                       ...+..++..+.+++.+||+.||++||++.|+++.|+++....
T Consensus       238 -~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  280 (327)
T 3lzb_A          238 -LPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARDP  280 (327)
T ss_dssp             -CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTSH
T ss_pred             -CCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhCc
Confidence             1112234457899999999999999999999999999998654

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=9.8e-38  Score=320.02  Aligned_cols=237  Identities=17%  Similarity=0.219  Sum_probs=189.0

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+++.. +|+.||+|++.......  ......+.+|++++++++||||+++++++...+  ..++||
T Consensus         9 ~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~--~~~lv~   84 (337)
T 1o6l_A            9 YLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIA--KDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD--RLCFVM   84 (337)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhh--hhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCC--EEEEEE
Confidence            4588999999999999965 68999999986532111  123457889999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh---
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  457 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~---  457 (592)
                      ||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        85 E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~  160 (337)
T 1o6l_A           85 EYANGGELFFHLSR--ERVFTEERARFYGAEIVSALEYLHSRD--VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA  160 (337)
T ss_dssp             ECCTTCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC
T ss_pred             eCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCcCCHHHEEECCCCCEEEeeccchhhcccCCC
Confidence            99999999998864  346899999999999999999999998  99999999999999999999999999875321   


Q ss_pred             ------hhhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          458 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       458 ------~~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                            +...+.+|+......++.++|||||||++|||+||+.||..  .+..+...........           ++..
T Consensus       161 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~~  227 (337)
T 1o6l_A          161 TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN--QDHERLFELILMEEIR-----------FPRT  227 (337)
T ss_dssp             CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCC-----------CCTT
T ss_pred             cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCC--CCHHHHHHHHHcCCCC-----------CCCC
Confidence                  11233444544444578999999999999999999999943  3344444444433211           1223


Q ss_pred             HHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      .+.++.+++.+||+.||++||     +++|+++
T Consensus       228 ~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~  260 (337)
T 1o6l_A          228 LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             SCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence            345789999999999999999     8998875

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=1.6e-38  Score=326.10  Aligned_cols=254  Identities=22%  Similarity=0.350  Sum_probs=196.3

Q ss_pred             HHHHhhhhcccCcCCCeEEEEEEeC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeE
Q 007711          296 EAACEDFSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIG  366 (592)
Q Consensus       296 ~~~~~~~~~~lG~G~~g~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g  366 (592)
                      ....+.+.+.||+|+||.||+|+..        ++..||||++....    .....+.+.+|+++++++ +||||+++++
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~~hp~iv~~~~  108 (334)
T 2pvf_A           33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA----TEKDLSDLVSEMEMMKMIGKHKNIINLLG  108 (334)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC----cHHHHHHHHHHHHHHHHhhcCCCEeeEEE
Confidence            3334456689999999999999863        46789999875332    234456799999999999 8999999999


Q ss_pred             EEecCCCcceEEEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcC
Q 007711          367 FCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN  432 (592)
Q Consensus       367 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk  432 (592)
                      ++...+  ..++||||+++|+|.+++....              ...+++..+..++.+++.||+|||+.+  |+|||||
T Consensus       109 ~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlk  184 (334)
T 2pvf_A          109 ACTQDG--PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK--CIHRDLA  184 (334)
T ss_dssp             EECSSS--CCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCS
T ss_pred             EEccCC--ceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCc
Confidence            998876  5699999999999999987532              134899999999999999999999998  9999999


Q ss_pred             CCCeEEcCCCceEEecCCcchhhhhhhhh-----hcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCC
Q 007711          433 SSAVHLTEDYAAKLSDLSFWNEIAMAEMA-----ATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDN  500 (592)
Q Consensus       433 ~~NiLl~~~~~~ki~DfGla~~~~~~~~~-----~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~  500 (592)
                      |+||+++.++.+||+|||+++........     ...+..+.+||      ++.++||||||+++|||+| |+.||.  .
T Consensus       185 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~--~  262 (334)
T 2pvf_A          185 ARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP--G  262 (334)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSST--T
T ss_pred             cceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcC--c
Confidence            99999999999999999998765432110     01112244444      6889999999999999999 999994  3


Q ss_pred             CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          501 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                      ....+...........          ..+..++..+.+++.+||+.||.+||++.|+++.|++++...+
T Consensus       263 ~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~  321 (334)
T 2pvf_A          263 IPVEELFKLLKEGHRM----------DKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTT  321 (334)
T ss_dssp             CCHHHHHHHHHHTCCC----------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHhcCCCC----------CCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccc
Confidence            3344443333322110          1122334578999999999999999999999999999986643

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=4.3e-38  Score=312.80  Aligned_cols=246  Identities=24%  Similarity=0.358  Sum_probs=180.7

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||.||+|.+. +..+|||++....... .....+.+.+|+++++.++||||+++++++...+  ..++||
T Consensus        10 ~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   85 (271)
T 3dtc_A           10 TLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDED-ISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEP--NLCLVM   85 (271)
T ss_dssp             EEEEEEEEETTEEEEEEEET-TEEEEEEEC-----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC----CEEEE
T ss_pred             eeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCccc-HHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC--ceEEEE
Confidence            34578999999999999974 8899999886543222 1223467899999999999999999999998876  569999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CeEeeCcCCCCeEEcC--------CCceEEecCCc
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP-PIAHNYLNSSAVHLTE--------DYAAKLSDLSF  451 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~-~ivH~dLk~~NiLl~~--------~~~~ki~DfGl  451 (592)
                      ||+++|+|.+++.   ...+++..+..++.+++.||+|||+.+. +++||||||+||+++.        ++.+||+|||+
T Consensus        86 e~~~~~~L~~~~~---~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~  162 (271)
T 3dtc_A           86 EFARGGPLNRVLS---GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGL  162 (271)
T ss_dssp             ECCTTEEHHHHHT---SSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC
T ss_pred             EcCCCCCHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCc
Confidence            9999999999885   3468999999999999999999999873 4899999999999986        67899999999


Q ss_pred             chhhhhhhh-------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          452 WNEIAMAEM-------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       452 a~~~~~~~~-------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ++.......       .+.+|+......++.++||||||+++|||+||+.||...  ...............        
T Consensus       163 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~--~~~~~~~~~~~~~~~--------  232 (271)
T 3dtc_A          163 AREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGI--DGLAVAYGVAMNKLA--------  232 (271)
T ss_dssp             -------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTS--CHHHHHHHHHTSCCC--------
T ss_pred             ccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHhhhcCCCC--------
Confidence            986543221       122222222233788999999999999999999999532  222222222222111        


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                       ...+..++..+.+++.+||+.||++|||+.|+++.|+++
T Consensus       233 -~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          233 -LPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             -CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             -CCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence             112233446799999999999999999999999999864

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=1.5e-37  Score=321.68  Aligned_cols=244  Identities=18%  Similarity=0.274  Sum_probs=190.6

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCC-chhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW-PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      .+.+.||+|+||.||+|+.. +|..||+|.+........ .....+.+.+|++++++++||||+++++++....  ..++
T Consensus        15 ~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~--~~~l   92 (361)
T 2yab_A           15 DIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRT--DVVL   92 (361)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEE
T ss_pred             EEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCC--EEEE
Confidence            45688999999999999965 689999999876543221 1123567999999999999999999999998876  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC----ceEEecCCcchh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY----AAKLSDLSFWNE  454 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~----~~ki~DfGla~~  454 (592)
                      ||||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||+++++    .+||+|||+++.
T Consensus        93 v~e~~~gg~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH~~g--ivHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~  168 (361)
T 2yab_A           93 ILELVSGGELFDFLAQ--KESLSEEEATSFIKQILDGVNYLHTKK--IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (361)
T ss_dssp             EEECCCSCBHHHHHTT--CSCCBHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEESCTTSSSCCEEECCCSSCEE
T ss_pred             EEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEeCCCCCccCEEEEecCCceE
Confidence            9999999999999863  356899999999999999999999998  99999999999998877    799999999986


Q ss_pred             hhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          455 IAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       455 ~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      .....        ..+.+|+......++.++|||||||++|||++|+.||..  ....+...........+...      
T Consensus       169 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~--~~~~~~~~~i~~~~~~~~~~------  240 (361)
T 2yab_A          169 IEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG--DTKQETLANITAVSYDFDEE------  240 (361)
T ss_dssp             CCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCC--SSHHHHHHHHHTTCCCCCHH------
T ss_pred             cCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhcCCCCCch------
Confidence            54321        123334433444578899999999999999999999953  33344444443332211110      


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       .....+..+.+++.+||+.||++|||+.|+++
T Consensus       241 -~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          241 -FFSQTSELAKDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             -HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             -hccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence             01122356889999999999999999999874

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=317.49  Aligned_cols=246  Identities=18%  Similarity=0.276  Sum_probs=190.2

Q ss_pred             HhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCC-chhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW-PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      .+.+.+.||+|+||.||+|... +|..||+|.+........ .....+.+.+|++++++++||||+++++++....  ..
T Consensus        12 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~   89 (326)
T 2y0a_A           12 YYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKT--DV   89 (326)
T ss_dssp             HEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EE
T ss_pred             ceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--EE
Confidence            3456689999999999999964 588999999876543221 1123567999999999999999999999998876  67


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC----ceEEecCCcc
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY----AAKLSDLSFW  452 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~----~~ki~DfGla  452 (592)
                      ++||||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++    .+||+|||++
T Consensus        90 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a  165 (326)
T 2y0a_A           90 ILILELVAGGELFDFLAE--KESLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLLDRNVPKPRIKIIDFGLA  165 (326)
T ss_dssp             EEEEECCCSCBHHHHHTT--SSCCBHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESCSSSSSCCEEECCCTTC
T ss_pred             EEEEEcCCCCCHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHCC--eEcCCCCHHHEEEecCCCCCCCEEEEECCCC
Confidence            999999999999999863  356899999999999999999999999  99999999999999887    8999999999


Q ss_pred             hhhhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          453 NEIAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       453 ~~~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      +......        ..+.+|+......++.++|||||||++|||+||+.||..  ....+...............    
T Consensus       166 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~--~~~~~~~~~~~~~~~~~~~~----  239 (326)
T 2y0a_A          166 HKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG--DTKQETLANVSAVNYEFEDE----  239 (326)
T ss_dssp             EECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCC--SSHHHHHHHHHHTCCCCCHH----
T ss_pred             eECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCC--CCHHHHHHHHHhcCCCcCcc----
Confidence            8654221        122333333334578899999999999999999999943  23333333332221111100    


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                         .....+..+.+++.+||+.||++|||+.|+++
T Consensus       240 ---~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  271 (326)
T 2y0a_A          240 ---YFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  271 (326)
T ss_dssp             ---HHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ---ccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence               01122356889999999999999999999986

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7e-38  Score=321.18  Aligned_cols=245  Identities=22%  Similarity=0.359  Sum_probs=188.9

Q ss_pred             hhcccCcCCCeEEEEEEeCC-----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          302 FSNVIGSSPIGTVYKGTLSN-----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~-----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.+.||+|+||.||+|....     +..||||.+....    .......|.+|++++++++||||+++++++...+  ..
T Consensus        48 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~  121 (333)
T 1mqb_A           48 RQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY----TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK--PM  121 (333)
T ss_dssp             EEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--SE
T ss_pred             cccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC----CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCC--Cc
Confidence            45789999999999998643     2358888875322    2344567999999999999999999999998776  67


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++||||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++...
T Consensus       122 ~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~  198 (333)
T 1mqb_A          122 MIITEYMENGALDKFLRE-KDGEFSVLQLVGMLRGIAAGMKYLANMN--YVHRDLAARNILVNSNLVCKVSDFGLSRVLE  198 (333)
T ss_dssp             EEEEECCTTEEHHHHHHH-TTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred             EEEEeCCCCCcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCChheEEECCCCcEEECCCCcchhhc
Confidence            999999999999999864 3456899999999999999999999998  9999999999999999999999999998764


Q ss_pred             hhhh------------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          457 MAEM------------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       457 ~~~~------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ....            .+.+|+......++.++|||||||++|||+| |+.||..  ....+.......+. ..      
T Consensus       199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~--~~~~~~~~~~~~~~-~~------  269 (333)
T 1mqb_A          199 DDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWE--LSNHEVMKAINDGF-RL------  269 (333)
T ss_dssp             ------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHHHTTC-CC------
T ss_pred             cccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCccc--CCHHHHHHHHHCCC-cC------
Confidence            3211            1223333333347889999999999999999 9999943  33333333332221 11      


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                         ..+..++..+.+++.+||+.||++||++.++++.|+++...
T Consensus       270 ---~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~  310 (333)
T 1mqb_A          270 ---PTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA  310 (333)
T ss_dssp             ---CCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             ---CCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence               11223446789999999999999999999999999998755

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=9.6e-38  Score=322.49  Aligned_cols=248  Identities=19%  Similarity=0.235  Sum_probs=189.6

Q ss_pred             HHhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          298 ACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       298 ~~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      ..+.+.+.||+|+||.||+|... +|..||||++.............+.+.+|+++++.++||||+++++++...+  ..
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--~~  101 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDG--ML  101 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EE
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--EE
Confidence            34556789999999999999864 6899999998654322211123567999999999999999999999998877  67


Q ss_pred             EEEEeeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc---eEEecCCc
Q 007711          377 MMVFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA---AKLSDLSF  451 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~---~ki~DfGl  451 (592)
                      ++|||||++|+|.+++...  ....+++..+..++.+++.||+|||+++  |+||||||+|||++.++.   +||+|||+
T Consensus       102 ~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~--ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~  179 (351)
T 3c0i_A          102 YMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNN--IIHRDVKPHCVLLASKENSAPVKLGGFGV  179 (351)
T ss_dssp             EEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECSSSTTCCEEECCCTT
T ss_pred             EEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCChHHeEEecCCCCCcEEEecCcc
Confidence            9999999999998877543  3346899999999999999999999998  999999999999987654   99999999


Q ss_pred             chhhhhhh---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccC
Q 007711          452 WNEIAMAE---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD  522 (592)
Q Consensus       452 a~~~~~~~---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (592)
                      ++......         ..+.+||......++.++|||||||++|||+||+.||...   ..+.......+........ 
T Consensus       180 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~---~~~~~~~i~~~~~~~~~~~-  255 (351)
T 3c0i_A          180 AIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT---KERLFEGIIKGKYKMNPRQ-  255 (351)
T ss_dssp             CEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS---HHHHHHHHHHTCCCCCHHH-
T ss_pred             eeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc---HHHHHHHHHcCCCCCCccc-
Confidence            97654321         1233333333344788999999999999999999999542   2333333333221111000 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       523 ~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                            ....+..+.+++.+||+.||++||++.|+++
T Consensus       256 ------~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          256 ------WSHISESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             ------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ------cccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                  0122357899999999999999999999975

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.7e-38  Score=318.31  Aligned_cols=239  Identities=15%  Similarity=0.225  Sum_probs=188.1

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|... ++..+|+|.+....      .....+.+|+++++.++||||+++++++...+  ..++|
T Consensus         8 ~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~------~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--~~~lv   79 (321)
T 1tki_A            8 MIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG------TDQVLVKKEISILNIARHRNILHLHESFESME--ELVMI   79 (321)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT------HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETT--EEEEE
T ss_pred             EeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc------ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCC--EEEEE
Confidence            34578999999999999965 57889999875322      23567889999999999999999999998877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC--CCceEEecCCcchhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE--DYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~--~~~~ki~DfGla~~~~~  457 (592)
                      |||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.  ++.+||+|||+++....
T Consensus        80 ~e~~~g~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~g--ivH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~  156 (321)
T 1tki_A           80 FEFISGLDIFERINT-SAFELNEREIVSYVHQVCEALQFLHSHN--IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP  156 (321)
T ss_dssp             ECCCCCCBHHHHHTS-SSCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSSSCCCEEECCCTTCEECCT
T ss_pred             EEeCCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCcCCCCHHHEEEccCCCCCEEEEECCCCeECCC
Confidence            999999999999863 3346899999999999999999999998  999999999999997  78999999999987643


Q ss_pred             hh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          458 AE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       458 ~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      ..        ..+.+|+......++.++|||||||++|||+||+.||..  ....+................       .
T Consensus       157 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~-------~  227 (321)
T 1tki_A          157 GDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLA--ETNQQIIENIMNAEYTFDEEA-------F  227 (321)
T ss_dssp             TCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHTCCCCCHHH-------H
T ss_pred             CCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcC--CCHHHHHHHHHcCCCCCChhh-------h
Confidence            21        122233333333368899999999999999999999943  334444444443322111100       0


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...+.++.+++.+||+.||++|||+.|+++
T Consensus       228 ~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~  257 (321)
T 1tki_A          228 KEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             TTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            122457899999999999999999999987

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=313.69  Aligned_cols=243  Identities=21%  Similarity=0.262  Sum_probs=180.1

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCC---------------------chhHHHHHHHHHHHHhcCCC
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDW---------------------PKNLEVQFRKKIDTLSKVNH  358 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~---------------------~~~~~~~f~~e~~~l~~l~H  358 (592)
                      .+.+.||+|+||.||+|+. .++..||||++........                     .....+.|.+|++++++++|
T Consensus        16 ~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h   95 (298)
T 2zv2_A           16 TLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDH   95 (298)
T ss_dssp             EEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCC
T ss_pred             EEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCC
Confidence            3457899999999999986 4688999999865432110                     01123568999999999999


Q ss_pred             CceeeeeEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE
Q 007711          359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL  438 (592)
Q Consensus       359 ~niv~l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl  438 (592)
                      |||+++++++........++||||+++|+|.+++.   ...+++..+..++.+++.||+|||+.+  |+||||||+|||+
T Consensus        96 ~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~  170 (298)
T 2zv2_A           96 PNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT---LKPLSEDQARFYFQDLIKGIEYLHYQK--IIHRDIKPSNLLV  170 (298)
T ss_dssp             TTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC---SSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEE
T ss_pred             CCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHEEE
Confidence            99999999998743336799999999999988764   346899999999999999999999998  9999999999999


Q ss_pred             cCCCceEEecCCcchhhhhhh---------hhhcccccCCCCC---CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHH
Q 007711          439 TEDYAAKLSDLSFWNEIAMAE---------MAATSKKLSSAPS---ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDW  506 (592)
Q Consensus       439 ~~~~~~ki~DfGla~~~~~~~---------~~~~~~~~~~~~~---~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~  506 (592)
                      +.++.+||+|||+++......         ..+.+||......   ++.++|||||||++|||+||+.||..  .....+
T Consensus       171 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~--~~~~~~  248 (298)
T 2zv2_A          171 GEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMD--ERIMCL  248 (298)
T ss_dssp             CTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHH
T ss_pred             CCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCC--ccHHHH
Confidence            999999999999987654221         1223333322211   25678999999999999999999943  333333


Q ss_pred             HHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          507 AADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...........     +..    ...+..+.+++.+||+.||++||++.|+++
T Consensus       249 ~~~~~~~~~~~-----~~~----~~~~~~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          249 HSKIKSQALEF-----PDQ----PDIAEDLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             HHHHHHCCCCC-----CSS----SCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             HHHHhcccCCC-----CCc----cccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence            33333221111     111    122356899999999999999999999864

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=5e-38  Score=320.80  Aligned_cols=238  Identities=20%  Similarity=0.254  Sum_probs=182.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. ++..||||++......    ...+.+.+|+.+++.++||||+++++++...+  ..++||
T Consensus        11 i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--~~~lv~   84 (323)
T 3tki_A           11 LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV----DCPENIKKEICINKMLNHENVVKFYGHRREGN--IQYLFL   84 (323)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-----------CHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             eeeEEecCCCEEEEEEEECCCCcEEEEEEEEccccc----chHHHHHHHHHHHHhCCCCCCCeEEEEEecCC--eEEEEE
Confidence            4578999999999999965 7889999998654322    22356889999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.......
T Consensus        85 e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH~~g--ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  160 (323)
T 3tki_A           85 EYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLHGIG--ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR  160 (323)
T ss_dssp             ECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred             EcCCCCcHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccccchHHEEEeCCCCEEEEEeeccceeccCCc
Confidence            99999999999863  346899999999999999999999999  99999999999999999999999999976532111


Q ss_pred             -----hhcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          461 -----AATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       461 -----~~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                           .......+.+||       .+.++|||||||++|||+||+.||.........+... .......    .     .
T Consensus       161 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~-~~~~~~~----~-----~  230 (323)
T 3tki_A          161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDW-KEKKTYL----N-----P  230 (323)
T ss_dssp             ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHH-HTTCTTS----T-----T
T ss_pred             ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHH-hcccccC----C-----c
Confidence                 001112233333       3678999999999999999999996544332222211 1111100    0     1


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .......+.+++.+||+.||++|||+.|+++
T Consensus       231 ~~~~~~~~~~li~~~L~~dP~~R~t~~eil~  261 (323)
T 3tki_A          231 WKKIDSAPLALLHKILVENPSARITIPDIKK  261 (323)
T ss_dssp             GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence            1233456889999999999999999999876

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=5.2e-38  Score=318.98  Aligned_cols=249  Identities=20%  Similarity=0.244  Sum_probs=183.5

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.+.||+|+||.||+|+..+|..||+|++......   ......+.+|++++++++||||+++++++....  ..++|||
T Consensus        25 ~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~e   99 (311)
T 3niz_A           25 KLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAED---EGIPSTAIREISLLKELHHPNIVSLIDVIHSER--CLTLVFE   99 (311)
T ss_dssp             EEEEEEECSSCEEEEEEETTSCEEEEEEEC---------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSS--CEEEEEE
T ss_pred             hhhhccCCCCeEEEEEEECCCCEEEEEEEeccccc---chhhHHHHHHHHHHHHcCCCCEeeeeeEEccCC--EEEEEEc
Confidence            45789999999999999988999999998654322   234567889999999999999999999998776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh--
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~--  459 (592)
                      |++ |+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++......  
T Consensus       100 ~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~  175 (311)
T 3niz_A          100 FME-KDLKKVLDE-NKTGLQDSQIKIYLYQLLRGVAHCHQHR--ILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRS  175 (311)
T ss_dssp             CCS-EEHHHHHHT-CTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC-
T ss_pred             CCC-CCHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCchHhEEECCCCCEEEccCcCceecCCCccc
Confidence            997 588887754 3356899999999999999999999998  9999999999999999999999999998654211  


Q ss_pred             -------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCC-ChHHHHHHHhcCCCC--Ccccc------C
Q 007711          460 -------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQP--LQQFV------D  522 (592)
Q Consensus       460 -------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~--~~~~~------~  522 (592)
                             ..+.+||... ...++.++|||||||++|||+||+.||..... +..............  .....      +
T Consensus       176 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  255 (311)
T 3niz_A          176 YTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQ  255 (311)
T ss_dssp             --CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHS
T ss_pred             ccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhh
Confidence                   1122333222 23478899999999999999999999964332 222222221111000  00000      0


Q ss_pred             CC---CCC-----CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          523 PT---LSS-----FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       523 ~~---~~~-----~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..   ...     ..+....++.+++.+||+.||++|||++|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          256 RTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             CCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             cccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            00   000     01122357889999999999999999999875

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=1.2e-37  Score=316.97  Aligned_cols=237  Identities=18%  Similarity=0.236  Sum_probs=188.0

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+++.. +|+.||+|++.......  ....+.+.+|+.+++.++||||+++++++.+..  ..++||
T Consensus        10 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~--~~~lv~   85 (318)
T 1fot_A           10 ILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVR--LKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQ--QIFMIM   85 (318)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCC--EEEEEE
Confidence            4588999999999999964 68999999986542211  122456889999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++..  ...+++.....++.+++.||+|||+++  |+||||||+|||++.++.+||+|||+++...... 
T Consensus        86 e~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~  161 (318)
T 1fot_A           86 DYIEGGELFSLLRK--SQRFPNPVAKFYAAEVCLALEYLHSKD--IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTY  161 (318)
T ss_dssp             CCCCSCBHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEECTTSCEEECCCSSCEECSSCBC
T ss_pred             eCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCChheEEEcCCCCEEEeecCcceecCCccc
Confidence            99999999999864  346899999999999999999999998  9999999999999999999999999998654321 


Q ss_pred             -----hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 007711          460 -----MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  534 (592)
Q Consensus       460 -----~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (592)
                           ..+.+|+......++.++|||||||++|||+||+.||..  ....+...........           ++.....
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~--~~~~~~~~~i~~~~~~-----------~p~~~~~  228 (318)
T 1fot_A          162 TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYD--SNTMKTYEKILNAELR-----------FPPFFNE  228 (318)
T ss_dssp             CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHCCCC-----------CCTTSCH
T ss_pred             cccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCC-----------CCCCCCH
Confidence                 122333333334478899999999999999999999943  3344444444433211           1222335


Q ss_pred             HHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          535 TLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       535 ~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      .+.+++.+||+.||++||     +++|+++
T Consensus       229 ~~~~li~~lL~~dp~~R~~~~~~~~~~i~~  258 (318)
T 1fot_A          229 DVKDLLSRLITRDLSQRLGNLQNGTEDVKN  258 (318)
T ss_dssp             HHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence            788999999999999999     8888874

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=1.8e-37  Score=314.75  Aligned_cols=252  Identities=22%  Similarity=0.330  Sum_probs=189.6

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|.. .+|..||+|.+......  ......++.+|++++++++||||+++++++...+  ..++|
T Consensus        35 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv  110 (310)
T 2wqm_A           35 RIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLM--DAKARADCIKEIDLLKQLNHPNVIKYYASFIEDN--ELNIV  110 (310)
T ss_dssp             EEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             EEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhcc--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC--cEEEE
Confidence            3568899999999999996 57899999988653322  2345678999999999999999999999999877  67999


Q ss_pred             EeeCCCCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          380 FEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      |||+++|+|.+++..  .....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....
T Consensus       111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~  188 (310)
T 2wqm_A          111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVFITATGVVKLGDLGLGRFFSS  188 (310)
T ss_dssp             EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEECCC--------
T ss_pred             EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCC--eeCCCCcHHHEEEcCCCCEEEEeccceeeecC
Confidence            999999999998864  23466899999999999999999999998  99999999999999999999999999876543


Q ss_pred             hhh---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          458 AEM---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       458 ~~~---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      ...         .+.+++......++.++||||||+++|||+||+.||........+.........  .....       
T Consensus       189 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~-------  259 (310)
T 2wqm_A          189 KTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCD--YPPLP-------  259 (310)
T ss_dssp             ----------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTC--SCCCC-------
T ss_pred             CCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhccc--CCCCc-------
Confidence            221         122233333334688999999999999999999999655545444444333221  11100       


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ....+..+.+++.+||+.||++||++.++++.|+++...
T Consensus       260 ~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~  298 (310)
T 2wqm_A          260 SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHAC  298 (310)
T ss_dssp             TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence            122345789999999999999999999999999998654

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.8e-37  Score=311.59  Aligned_cols=252  Identities=16%  Similarity=0.220  Sum_probs=189.7

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|... ++..||+|.+......+  ....+.|.+|++++++++||||+++++++...+  ..++|
T Consensus        37 ~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~--~~~lv  112 (309)
T 2h34_A           37 RLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSD--PVFRTRMQREARTAGRLQEPHVVPIHDFGEIDG--QLYVD  112 (309)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGS--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             EEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccC--HHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCC--eEEEE
Confidence            34688999999999999964 68899999886443222  334578999999999999999999999998877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||+++++|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++......
T Consensus       113 ~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~  188 (309)
T 2h34_A          113 MRLINGVDLAAMLRRQ--GPLAPPRAVAIVRQIGSALDAAHAAG--ATHRDVKPENILVSADDFAYLVDFGIASATTDEK  188 (309)
T ss_dssp             EECCCCEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTSCEEECSCCC--------
T ss_pred             EEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCc--CCcCCCChHHEEEcCCCCEEEecCccCccccccc
Confidence            9999999999998643  46899999999999999999999998  9999999999999999999999999987654321


Q ss_pred             ----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          460 ----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       460 ----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                                ..+.+|+......++.++||||||+++|||+||+.||....  . ................       .+
T Consensus       189 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~-~~~~~~~~~~~~~~~~-------~~  258 (309)
T 2h34_A          189 LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ--L-SVMGAHINQAIPRPST-------VR  258 (309)
T ss_dssp             --------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCH--H-HHHHHHHHSCCCCGGG-------TS
T ss_pred             cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCch--H-HHHHHHhccCCCCccc-------cC
Confidence                      12334444444457889999999999999999999995322  2 2222222221111111       12


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHhhhCCCCC
Q 007711          530 EEQLETLGELIKSCVRADPEKRP-TMRDIAAILREITGITPD  570 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RP-s~~ev~~~L~~i~~~~~~  570 (592)
                      ...+..+.+++.+||+.||++|| +++++++.|+.++.....
T Consensus       259 ~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~~  300 (309)
T 2h34_A          259 PGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATADQ  300 (309)
T ss_dssp             TTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC----
T ss_pred             CCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhcc
Confidence            22334688999999999999999 999999999998766543

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=2e-38  Score=318.24  Aligned_cols=244  Identities=19%  Similarity=0.317  Sum_probs=185.7

Q ss_pred             hhhhcccCcCCCeEEEEEEeCC-C-------cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecC
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSN-G-------VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE  371 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~-~-------~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~  371 (592)
                      ..+.+.||+|+||.||+|+... +       ..||+|.+....     ....+.|.+|++++++++||||+++++++...
T Consensus        10 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~-----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   84 (289)
T 4fvq_A           10 LIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH-----RNYSESFFEAASMMSKLSHKHLVLNYGVCVCG   84 (289)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGG-----GGGHHHHHHHHHHHHTSCCTTBCCEEEEECCT
T ss_pred             eeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccccc-----HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeC
Confidence            3456889999999999998643 3       468888875432     23457799999999999999999999999887


Q ss_pred             CCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc--------
Q 007711          372 EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA--------  443 (592)
Q Consensus       372 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~--------  443 (592)
                      +  ..++||||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.        
T Consensus        85 ~--~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~~~~~~~~  159 (289)
T 4fvq_A           85 D--ENILVQEFVKFGSLDTYLKKN-KNCINILWKLEVAKQLAAAMHFLEENT--LIHGNVCAKNILLIREEDRKTGNPPF  159 (289)
T ss_dssp             T--CCEEEEECCTTCBHHHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEEECCBGGGTBCCE
T ss_pred             C--CCEEEEECCCCCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhhCC--eECCCcCcceEEEecCCcccccccce
Confidence            6  568999999999999999743 334899999999999999999999999  999999999999998887        


Q ss_pred             eEEecCCcchhhhhhhh-----hhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC
Q 007711          444 AKLSDLSFWNEIAMAEM-----AATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL  517 (592)
Q Consensus       444 ~ki~DfGla~~~~~~~~-----~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~  517 (592)
                      +||+|||+++.......     .+.+|+.... ..++.++|||||||++|||+||..|+.... ........ .......
T Consensus       160 ~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~-~~~~~~~~-~~~~~~~  237 (289)
T 4fvq_A          160 IKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSAL-DSQRKLQF-YEDRHQL  237 (289)
T ss_dssp             EEECCCCSCTTTSCHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTS-CHHHHHHH-HHTTCCC
T ss_pred             eeeccCcccccccCccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCcccc-chHHHHHH-hhccCCC
Confidence            99999999976543222     2233333222 347889999999999999999655442222 22222211 1111111


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      ..           ..+..+.+++.+||+.||++|||+.|+++.|+++..
T Consensus       238 ~~-----------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~  275 (289)
T 4fvq_A          238 PA-----------PKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFT  275 (289)
T ss_dssp             CC-----------CSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred             CC-----------CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            11           112357899999999999999999999999998865

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=2.4e-38  Score=316.59  Aligned_cols=245  Identities=19%  Similarity=0.314  Sum_probs=182.5

Q ss_pred             hhhhcccCcCCCeEEEEEEeCC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.+.||+|+||.||+|....    +..||+|.+....    .....+.|.+|+.++++++||||+++++++.+.   .
T Consensus        17 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~---~   89 (281)
T 1mp8_A           17 IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT----SDSVREKFLQEALTMRQFDHPHIVKLIGVITEN---P   89 (281)
T ss_dssp             EEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT----SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS---S
T ss_pred             eEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC----CHHHHHHHHHHHHHHHhCCCCccceEEEEEccC---c
Confidence            4456889999999999998743    4568888764321    234567899999999999999999999998543   4


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++..
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  166 (281)
T 1mp8_A           90 VWIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVSSNDCVKLGDFGLSRYM  166 (281)
T ss_dssp             CEEEEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEEETTEEEECC-------
T ss_pred             cEEEEecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCC--eecccccHHHEEECCCCCEEECcccccccc
Confidence            68999999999999998643 346899999999999999999999998  999999999999999999999999999876


Q ss_pred             hhhhh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          456 AMAEM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       456 ~~~~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      .....          .+.+|+......++.++||||||+++|||+| |+.||....  ..+..........         
T Consensus       167 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~--~~~~~~~i~~~~~---------  235 (281)
T 1mp8_A          167 EDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK--NNDVIGRIENGER---------  235 (281)
T ss_dssp             ------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHHHTTCC---------
T ss_pred             CcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCC--HHHHHHHHHcCCC---------
Confidence            43221          1222222222346889999999999999997 999995332  2222222222210         


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                       ...+..++..+.+++.+||+.||++||++.|+++.|++++.
T Consensus       236 -~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~  276 (281)
T 1mp8_A          236 -LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE  276 (281)
T ss_dssp             -CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence             11223344678999999999999999999999999999864

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=3.3e-38  Score=322.91  Aligned_cols=239  Identities=16%  Similarity=0.263  Sum_probs=181.9

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC------
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP------  373 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~------  373 (592)
                      .+.+.||+|+||.||+|+.. +|..||||++.....    ....+.+.+|++++++++||||+++++++.+...      
T Consensus         9 ~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            9 EPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR----ELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             EEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCST----TTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             ceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCc----hhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            44588999999999999975 789999999865432    2346789999999999999999999999865432      


Q ss_pred             -------------------------------------------------cceEEEEeeCCCCCchhhccccC-CCCCCHH
Q 007711          374 -------------------------------------------------FTRMMVFEYAPNGTLFEHIHIKE-SEHLDWG  403 (592)
Q Consensus       374 -------------------------------------------------~~~~lv~Ey~~~gsL~~~l~~~~-~~~l~~~  403 (592)
                                                                       ...++||||+++|+|.+++.... .....+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  164 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG  164 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence                                                             12689999999999999987532 2345777


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh---------------------hhh
Q 007711          404 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---------------------MAA  462 (592)
Q Consensus       404 ~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~---------------------~~~  462 (592)
                      .+..++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++......                     ..+
T Consensus       165 ~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  242 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLHSKG--LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLY  242 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGG
T ss_pred             HHHHHHHHHHHHHHHHHhCC--eeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCc
Confidence            88999999999999999998  9999999999999999999999999988654321                     122


Q ss_pred             cccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q 007711          463 TSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKS  542 (592)
Q Consensus       463 ~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  542 (592)
                      .+|+......++.++|||||||++|||+||..|+..    ...........          ............+.+++.+
T Consensus       243 ~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~----~~~~~~~~~~~----------~~~~~~~~~~~~~~~li~~  308 (332)
T 3qd2_B          243 MSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQME----RVRIITDVRNL----------KFPLLFTQKYPQEHMMVQD  308 (332)
T ss_dssp             SCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHH----HHHHHHHHHTT----------CCCHHHHHHCHHHHHHHHH
T ss_pred             cChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhH----HHHHHHHhhcc----------CCCcccccCChhHHHHHHH
Confidence            233333333478899999999999999999887621    11111111111          1111122334567899999


Q ss_pred             hcccCCCCCCCHHHHHH
Q 007711          543 CVRADPEKRPTMRDIAA  559 (592)
Q Consensus       543 Cl~~dP~~RPs~~ev~~  559 (592)
                      ||+.||++||++.|+++
T Consensus       309 ~l~~~p~~Rps~~~~l~  325 (332)
T 3qd2_B          309 MLSPSPTERPEATDIIE  325 (332)
T ss_dssp             HHCSSGGGSCCHHHHHH
T ss_pred             HccCCCCcCCCHHHHhh
Confidence            99999999999999985

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=9.6e-39  Score=327.51  Aligned_cols=249  Identities=20%  Similarity=0.313  Sum_probs=190.8

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCC-C-----cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecC
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSN-G-----VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEE  371 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~-~-----~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~  371 (592)
                      ...+.+.||+|+||.||+|.... +     ..||+|.+....    .....+.+.+|+++++++ +||||+++++++...
T Consensus        47 ~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~  122 (333)
T 2i1m_A           47 NLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA----HADEKEALMSELKIMSHLGQHENIVNLLGACTHG  122 (333)
T ss_dssp             SEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc----ChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecC
Confidence            34456899999999999999643 2     478998875432    123457799999999999 899999999999887


Q ss_pred             CCcceEEEEeeCCCCCchhhccccC------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc
Q 007711          372 EPFTRMMVFEYAPNGTLFEHIHIKE------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT  439 (592)
Q Consensus       372 ~~~~~~lv~Ey~~~gsL~~~l~~~~------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~  439 (592)
                      +  ..++||||+++|+|.+++....            ...+++..+..++.+++.||+|||+.+  |+||||||+|||++
T Consensus       123 ~--~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~NIl~~  198 (333)
T 2i1m_A          123 G--PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKN--CIHRDVAARNVLLT  198 (333)
T ss_dssp             S--SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGCEEE
T ss_pred             C--ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCC--cccCCcccceEEEC
Confidence            7  5699999999999999986431            346799999999999999999999998  99999999999999


Q ss_pred             CCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHH
Q 007711          440 EDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA  507 (592)
Q Consensus       440 ~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~  507 (592)
                      .++.+||+|||+++.......           .+.+|+......++.++|||||||++|||+| |+.||......  ...
T Consensus       199 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~--~~~  276 (333)
T 2i1m_A          199 NGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVN--SKF  276 (333)
T ss_dssp             GGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSS--HHH
T ss_pred             CCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchh--HHH
Confidence            999999999999986543221           1222222222337889999999999999999 99999543322  112


Q ss_pred             HHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      ..........         ..+..++..+.+++.+||+.||.+||++.|+++.|+++..
T Consensus       277 ~~~~~~~~~~---------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~  326 (333)
T 2i1m_A          277 YKLVKDGYQM---------AQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQ  326 (333)
T ss_dssp             HHHHHHTCCC---------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCC---------CCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHH
Confidence            2222211110         0112234578999999999999999999999999998764

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=2.3e-38  Score=319.93  Aligned_cols=251  Identities=19%  Similarity=0.268  Sum_probs=188.9

Q ss_pred             hhhhcccCcCCCeEEEEEEe-----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  374 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  374 (592)
                      ..+.+.||+|+||.||+|++     .++..||+|.+......    ...+.+.+|++++++++||||+++++++......
T Consensus        23 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   98 (302)
T 4e5w_A           23 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGG----NHIADLKKEIEILRNLYHENIVKYKGICTEDGGN   98 (302)
T ss_dssp             EEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC---------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---C
T ss_pred             hhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccc----hhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCc
Confidence            34568899999999999984     36889999998654322    2346789999999999999999999999876433


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..++||||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++.
T Consensus        99 ~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  175 (302)
T 4e5w_A           99 GIKLIMEFLPSGSLKEYLPKN-KNKINLKQQLKYAVQICKGMDYLGSRQ--YVHRDLAARNVLVESEHQVKIGDFGLTKA  175 (302)
T ss_dssp             CEEEEEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             eEEEEEEeCCCCcHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHhhcCC--cccCCCchheEEEcCCCCEEECccccccc
Confidence            578999999999999998543 346899999999999999999999998  99999999999999999999999999976


Q ss_pred             hhhhhhh------hcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCC------------CChHHHHHHH
Q 007711          455 IAMAEMA------ATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDN------------GSLEDWAADY  510 (592)
Q Consensus       455 ~~~~~~~------~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~------------~~~~~~~~~~  510 (592)
                      .......      ...+..+.+||      ++.++||||||+++|||+||+.|+....            ..........
T Consensus       176 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (302)
T 4e5w_A          176 IETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNT  255 (302)
T ss_dssp             CCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHH
T ss_pred             ccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHH
Confidence            5432210      01112244444      5778999999999999999999873210            0011111111


Q ss_pred             hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          511 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      .....         ....+...+..+.+++.+||+.||.+|||+.|+++.|+++++
T Consensus       256 ~~~~~---------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll~  302 (302)
T 4e5w_A          256 LKEGK---------RLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK  302 (302)
T ss_dssp             HHTTC---------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred             HhccC---------CCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Confidence            11111         111233445679999999999999999999999999999864

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.5e-38  Score=323.06  Aligned_cols=237  Identities=22%  Similarity=0.323  Sum_probs=184.2

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|.. .++..||+|++.......  ......+.+|+++++.++||||+++++++....  ..++|
T Consensus        12 ~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~--~~~lv   87 (336)
T 3h4j_B           12 IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKK--SDMHMRVEREISYLKLLRHPHIIKLYDVITTPT--DIVMV   87 (336)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccc--hhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC--EEEEE
Confidence            3457899999999999996 578999999986432111  112356889999999999999999999998877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+ +|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++......
T Consensus        88 ~E~~-~g~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~g--ivH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~  162 (336)
T 3h4j_B           88 IEYA-GGELFDYIVEK--KRMTEDEGRRFFQQIICAIEYCHRHK--IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGN  162 (336)
T ss_dssp             ECCC-CEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHHT--CCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSB
T ss_pred             EECC-CCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCchhhEEEcCCCCEEEEEeccceeccCCc
Confidence            9999 78999888643  46899999999999999999999998  9999999999999999999999999998654322


Q ss_pred             --------hhhcccccCCCCC-CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 --------MAATSKKLSSAPS-ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 --------~~~~~~~~~~~~~-~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                              ..+.+|+...... .+.++|||||||++|||+||+.||......             .....+.......+.
T Consensus       163 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~-------------~~~~~i~~~~~~~p~  229 (336)
T 3h4j_B          163 FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIP-------------NLFKKVNSCVYVMPD  229 (336)
T ss_dssp             TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSST-------------TCBCCCCSSCCCCCT
T ss_pred             ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHH-------------HHHHHHHcCCCCCcc
Confidence                    1222333332222 267899999999999999999999532210             011111111122333


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+..+.+++.+||+.||.+|||++|+++
T Consensus       230 ~~s~~~~~li~~~L~~dP~~Rpt~~eil~  258 (336)
T 3h4j_B          230 FLSPGAQSLIRRMIVADPMQRITIQEIRR  258 (336)
T ss_dssp             TSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred             cCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence            44567899999999999999999999976

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=1.7e-38  Score=317.02  Aligned_cols=243  Identities=25%  Similarity=0.391  Sum_probs=184.5

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||.||+|.. +|..||||.+....       ..+.|.+|++++++++||||+++++++..... ..++||
T Consensus        24 ~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~-------~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~~lv~   94 (278)
T 1byg_A           24 KLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA-------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVT   94 (278)
T ss_dssp             EEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC---------HHHHHTHHHHTTCCCTTBCCEEEEECCC---CCEEEE
T ss_pred             eEEeEEecCCCceEEEEEE-cCCEEEEEEecchh-------HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCC-ceEEEE
Confidence            3568899999999999987 47899999875322       34679999999999999999999999865432 468999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++|+|.+++.......+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.......
T Consensus        95 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  172 (278)
T 1byg_A           95 EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD  172 (278)
T ss_dssp             CCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECTTSCEEECCCCC---------
T ss_pred             ecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCC--ccccCCCcceEEEeCCCcEEEeecccccccccccc
Confidence            9999999999987543334789999999999999999999998  99999999999999999999999999886543322


Q ss_pred             hhcccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          461 AATSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       461 ~~~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                      ....+..+.+|      .++.++||||||+++|||+| |+.||...  ...+.......+. .         ...+..++
T Consensus       173 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~--~~~~~~~~~~~~~-~---------~~~~~~~~  240 (278)
T 1byg_A          173 TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVVPRVEKGY-K---------MDAPDGCP  240 (278)
T ss_dssp             ---CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--CGGGHHHHHTTTC-C---------CCCCTTCC
T ss_pred             CCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHhcCC-C---------CCCcccCC
Confidence            22222233444      36889999999999999999 99999532  2223332222211 0         11223344


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      ..+.+++.+||+.||++||++.|+++.|+++..
T Consensus       241 ~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~  273 (278)
T 1byg_A          241 PAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  273 (278)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHh
Confidence            679999999999999999999999999999854

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=321.78  Aligned_cols=234  Identities=21%  Similarity=0.219  Sum_probs=184.2

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~  377 (592)
                      ..+.+.||+|+||.||+|+.. +|..||+|++.......  ....+.+.+|.+++..+ +||||+++++++...+  ..+
T Consensus        25 y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~--~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~--~~~  100 (353)
T 3txo_A           25 FEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQ--DDDVECTMTEKRILSLARNHPFLTQLFCCFQTPD--RLF  100 (353)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHH--HTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEE
T ss_pred             eEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcc--hhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCC--EEE
Confidence            345688999999999999965 58899999986532111  12345688899999988 7999999999998877  789


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +||||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....
T Consensus       101 lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~g--ivHrDlkp~NILl~~~g~ikL~DFG~a~~~~~  176 (353)
T 3txo_A          101 FVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEIISALMFLHDKG--IIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC  176 (353)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred             EEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--CcccCCCHHHEEECCCCCEEEccccceeeccc
Confidence            999999999999998643  46899999999999999999999998  99999999999999999999999999885321


Q ss_pred             hh---hhhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          458 AE---MAATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       458 ~~---~~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      ..   .....+..+++||      ++.++|||||||++|||+||+.||.  ..+..+.......+...+           
T Consensus       177 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~--~~~~~~~~~~i~~~~~~~-----------  243 (353)
T 3txo_A          177 NGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFE--AENEDDLFEAILNDEVVY-----------  243 (353)
T ss_dssp             ---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCCC-----------
T ss_pred             CCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCC--CCCHHHHHHHHHcCCCCC-----------
Confidence            11   1111223455555      6889999999999999999999994  334455555554432211           


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTM  554 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~  554 (592)
                      +......+.+++.+||+.||++||++
T Consensus       244 p~~~~~~~~~li~~lL~~dP~~R~~~  269 (353)
T 3txo_A          244 PTWLHEDATGILKSFMTKNPTMRLGS  269 (353)
T ss_dssp             CTTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred             CCCCCHHHHHHHHHHhhhCHHHccCC
Confidence            22233568899999999999999998

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=5.8e-38  Score=321.37  Aligned_cols=246  Identities=13%  Similarity=0.136  Sum_probs=189.8

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.+.||+|+||.||+|+. .++..||||.+......       +.+.+|+++++++ +|+||+++++++...+  ..++|
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-------~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~--~~~lv   83 (330)
T 2izr_A           13 VGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRA-------PQLHLEYRFYKQLGSGDGIPQVYYFGPCGK--YNAMV   83 (330)
T ss_dssp             EEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSS-------CCHHHHHHHHHHHCSCTTSCCEEEEEEETT--EEEEE
T ss_pred             EEEEeeccCCceEEEEEECCCCcEEEEEEeccccch-------HHHHHHHHHHHHhhCCCCCCEEEEEEecCC--ccEEE
Confidence            457899999999999995 57899999987644322       3588999999999 9999999999998876  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc-----eEEecCCcchh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA-----AKLSDLSFWNE  454 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~-----~ki~DfGla~~  454 (592)
                      |||+ +|+|.+++... ...+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.     +||+|||+++.
T Consensus        84 ~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~--iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~  159 (330)
T 2izr_A           84 LELL-GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVHSKN--LIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKE  159 (330)
T ss_dssp             EECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECCGGGTCTTSEEECCCTTCEE
T ss_pred             EEeC-CCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHeeeccCCCCCCceEEEEEccccee
Confidence            9999 99999998643 457999999999999999999999998  999999999999999887     99999999986


Q ss_pred             hhhhh----------------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCC-CChHHHHHHHhcCCCCC
Q 007711          455 IAMAE----------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPL  517 (592)
Q Consensus       455 ~~~~~----------------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~-~~~~~~~~~~~~~~~~~  517 (592)
                      .....                ..+.+++......++.++|||||||++|||+||+.||.... ....+............
T Consensus       160 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~  239 (330)
T 2izr_A          160 YIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRAT  239 (330)
T ss_dssp             SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHS
T ss_pred             eecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccC
Confidence            53221                11222333333447889999999999999999999996533 23333222221110000


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      .    .  .......+ ++.+++.+||+.||.+||++.+|++.|+++...
T Consensus       240 ~----~--~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~  282 (330)
T 2izr_A          240 P----I--EVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR  282 (330)
T ss_dssp             C----H--HHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             C----H--HHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence            0    0  00011123 799999999999999999999999999988643

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=2.4e-37  Score=314.83  Aligned_cols=252  Identities=20%  Similarity=0.309  Sum_probs=189.6

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecC--CCcceE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE--EPFTRM  377 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~~~  377 (592)
                      .+.+.||+|+||.||+++. .++..||||.+....     ....+.+.+|++++++++||||+++++++...  .....+
T Consensus        32 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  106 (317)
T 2buj_A           32 LFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHE-----QQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAW  106 (317)
T ss_dssp             EEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESS-----HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEE
T ss_pred             EEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCC-----HHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeE
Confidence            3467899999999999996 578999999886432     23467799999999999999999999998732  122568


Q ss_pred             EEEeeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          378 MVFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      +|+||+++|+|.+++...  ....+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++..
T Consensus       107 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~  184 (317)
T 2buj_A          107 LLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKG--YAHRDLKPTNILLGDEGQPVLMDLGSMNQA  184 (317)
T ss_dssp             EEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred             EEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence            999999999999988642  3467899999999999999999999998  999999999999999999999999987654


Q ss_pred             hhh------------------hhhhcccccCCCCC---CCCCCcchhhHHHHHHHHhCCCcccC---CCCChHHHHHHHh
Q 007711          456 AMA------------------EMAATSKKLSSAPS---ASLESNVYNFGVLLFEMVTGRLPYLV---DNGSLEDWAADYL  511 (592)
Q Consensus       456 ~~~------------------~~~~~~~~~~~~~~---~s~ksDVwSfGvvl~El~tG~~P~~~---~~~~~~~~~~~~~  511 (592)
                      ...                  ...+.+|+......   ++.++||||||+++|||+||+.||..   .........    
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~----  260 (317)
T 2buj_A          185 CIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAV----  260 (317)
T ss_dssp             CEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHH----
T ss_pred             ccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHh----
Confidence            210                  11223333332211   47799999999999999999999942   111111111    


Q ss_pred             cCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCC
Q 007711          512 SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGA  572 (592)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~  572 (592)
                      ......     +    .....+..+.+++.+||+.||.+||++.++++.|+.+....+...
T Consensus       261 ~~~~~~-----~----~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~~~  312 (317)
T 2buj_A          261 QNQLSI-----P----QSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQH  312 (317)
T ss_dssp             HCC--C-----C----CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC--
T ss_pred             hccCCC-----C----ccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCCCC
Confidence            110000     1    112233579999999999999999999999999999876655443

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=323.25  Aligned_cols=238  Identities=18%  Similarity=0.286  Sum_probs=181.3

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|+||.||+|.. .+|..||+|++.....     ...+.|.+|++++++++||||+++++++...+  ..++|||
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--~~~lv~E  166 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGM-----KDKEEVKNEISVMNQLDHANLIQLYDAFESKN--DIVLVME  166 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSH-----HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEEEE
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEccccc-----ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECC--EEEEEEe
Confidence            35799999999999996 4689999998865332     34567999999999999999999999998877  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE--cCCCceEEecCCcchhhhhhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL--TEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl--~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||+  ++++.+||+|||+++......
T Consensus       167 ~~~~~~L~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~  243 (373)
T 2x4f_A          167 YVDGGELFDRIID-ESYNLTELDTILFMKQICEGIRHMHQMY--ILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE  243 (373)
T ss_dssp             CCTTCEEHHHHHH-TGGGCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC
T ss_pred             CCCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc
Confidence            9999999998863 2346899999999999999999999999  9999999999999  577899999999998654322


Q ss_pred             h--------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 M--------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 ~--------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                      .        .+.+||......++.++|||||||++|||+||+.||..  ....+..............   ...    ..
T Consensus       244 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~--~~~~~~~~~i~~~~~~~~~---~~~----~~  314 (373)
T 2x4f_A          244 KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLG--DNDAETLNNILACRWDLED---EEF----QD  314 (373)
T ss_dssp             BCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHTCCCSCS---GGG----TT
T ss_pred             ccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhccCCCCh---hhh----cc
Confidence            1        12223333333468899999999999999999999943  3333444444333211110   001    12


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+.++.+++.+||+.||++||++.|+++
T Consensus       315 ~~~~~~~li~~~L~~dp~~Rps~~e~l~  342 (373)
T 2x4f_A          315 ISEEAKEFISKLLIKEKSWRISASEALK  342 (373)
T ss_dssp             SCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            2357899999999999999999999986

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=1.3e-37  Score=320.77  Aligned_cols=242  Identities=19%  Similarity=0.222  Sum_probs=187.5

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ....+.||+|+||.||+|+. .++..||||++......  .....++|.+|++++++++||||+++++++...+  ..++
T Consensus        56 y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~l  131 (348)
T 1u5q_A           56 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQ--SNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH--TAWL  131 (348)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSC--HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEE
T ss_pred             eeeeeEEccCCCEEEEEEEEccCCeEEEEEEEcccccc--chHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC--eEEE
Confidence            33457899999999999995 57899999988654322  2334567999999999999999999999998877  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||||++ |+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++.....
T Consensus       132 v~e~~~-g~l~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~  207 (348)
T 1u5q_A          132 VMEYCL-GSASDLLEV-HKKPLQEVEIAAVTHGALQGLAYLHSHN--MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA  207 (348)
T ss_dssp             EEECCS-EEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB
T ss_pred             EEecCC-CCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEECCCCCEEEeeccCceecCCC
Confidence            999997 688887753 2356899999999999999999999998  999999999999999999999999998765422


Q ss_pred             h-----hhhcccccC---CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          459 E-----MAATSKKLS---SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       459 ~-----~~~~~~~~~---~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                      .     ..+.+|+..   ....++.++|||||||++|||+||+.||..  ....+............  .       ...
T Consensus       208 ~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~--~~~~~~~~~~~~~~~~~--~-------~~~  276 (348)
T 1u5q_A          208 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN--MNAMSALYHIAQNESPA--L-------QSG  276 (348)
T ss_dssp             CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCCCC--C-------CCT
T ss_pred             CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCC--CChHHHHHHHHhcCCCC--C-------CCC
Confidence            1     223333332   123468899999999999999999999943  23333333333321110  0       012


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      ..+..+.+++.+||+.||++|||++++++.
T Consensus       277 ~~~~~l~~li~~~l~~dP~~Rps~~~ll~h  306 (348)
T 1u5q_A          277 HWSEYFRNFVDSCLQKIPQDRPTSEVLLKH  306 (348)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred             CCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence            233568899999999999999999999863

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.1e-37  Score=323.09  Aligned_cols=260  Identities=18%  Similarity=0.251  Sum_probs=200.1

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. +|..||||++......    ...+.+.+|++++++++||||+++++++........++||
T Consensus        13 i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A           13 LSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL----RPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGG----SCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEEEcCCCeEEEEEEECCCCcEEEEEEecccccc----chHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence            4578999999999999975 4899999998643322    2246788999999999999999999999876543568999


Q ss_pred             eeCCCCCchhhccccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE----cCCCceEEecCCcchhh
Q 007711          381 EYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL----TEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl----~~~~~~ki~DfGla~~~  455 (592)
                      ||+++|+|.+++.... ...+++..+..++.+++.||+|||+++  |+||||||+|||+    +.++.+||+|||+++..
T Consensus        89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~  166 (396)
T 4eut_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG--IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAREL  166 (396)
T ss_dssp             CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEEECTTSCEEEEECCGGGCEEC
T ss_pred             ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCC--EEECCcCHHHEEEeecCCCceeEEEecCCCceEc
Confidence            9999999999997542 234899999999999999999999999  9999999999999    88889999999999876


Q ss_pred             hhhhhh--hcccccCCCCC--------------CCCCCcchhhHHHHHHHHhCCCcccCCC--CChHHHHHHHhcCCCC-
Q 007711          456 AMAEMA--ATSKKLSSAPS--------------ASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLEDWAADYLSGVQP-  516 (592)
Q Consensus       456 ~~~~~~--~~~~~~~~~~~--------------~s~ksDVwSfGvvl~El~tG~~P~~~~~--~~~~~~~~~~~~~~~~-  516 (592)
                      ......  ...+..+.+||              ++.++|||||||++|||+||+.||....  ....+.......+... 
T Consensus       167 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~  246 (396)
T 4eut_A          167 EDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSG  246 (396)
T ss_dssp             CCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTT
T ss_pred             cCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcc
Confidence            433221  11123344444              3567999999999999999999996422  2233444444433211 


Q ss_pred             -Cccc---c---------CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          517 -LQQF---V---------DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       517 -~~~~---~---------~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                       ...+   .         -+............+.+++.+||+.||++||++.|+++.+++++..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          247 AISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (396)
T ss_dssp             CCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred             cchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence             0000   0         0111234567788899999999999999999999999999999865

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=3e-37  Score=319.90  Aligned_cols=243  Identities=20%  Similarity=0.249  Sum_probs=189.7

Q ss_pred             HhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      .+.+.+.||+|+||.||+|... +|..||+|++.....   .....+.+.+|++++++++||||+++++++....  ..+
T Consensus        30 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--~~~  104 (362)
T 2bdw_A           30 NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL---SARDFQKLEREARICRKLQHPNIVRLHDSIQEES--FHY  104 (362)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEE
T ss_pred             CeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC--EEE
Confidence            3455688999999999999964 688999999865432   2334567899999999999999999999998877  679


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC---ceEEecCCcchh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAKLSDLSFWNE  454 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~---~~ki~DfGla~~  454 (592)
                      +||||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++   .+||+|||+++.
T Consensus       105 lv~e~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~  180 (362)
T 2bdw_A          105 LVFDLVTGGELFEDIVA--REFYSEADASHCIQQILESIAYCHSNG--IVHRNLKPENLLLASKAKGAAVKLADFGLAIE  180 (362)
T ss_dssp             EEECCCCSCBHHHHHTT--CSCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSGGGEEESCSSTTCCEEECCCTTCBC
T ss_pred             EEEecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCchHHEEEecCCCCCCEEEeecCcceE
Confidence            99999999999998863  356899999999999999999999998  99999999999998654   599999999976


Q ss_pred             hhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          455 IAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       455 ~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      .....        ..+.+||......++.++|||||||++|||+||+.||..  .+..+.......+.....   .+   
T Consensus       181 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~--~~~~~~~~~i~~~~~~~~---~~---  252 (362)
T 2bdw_A          181 VNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWD--EDQHRLYAQIKAGAYDYP---SP---  252 (362)
T ss_dssp             CTTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCC---TT---
T ss_pred             ecCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCCCC---cc---
Confidence            64322        122233333333478899999999999999999999953  333444444333321111   00   


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       .....+..+.+++.+||+.||++||++.|+++
T Consensus       253 -~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  284 (362)
T 2bdw_A          253 -EWDTVTPEAKSLIDSMLTVNPKKRITADQALK  284 (362)
T ss_dssp             -GGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             -cccCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence             11233467899999999999999999999875

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=1.6e-37  Score=320.16  Aligned_cols=237  Identities=18%  Similarity=0.235  Sum_probs=189.2

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+++.. +|..||+|++.......  ....+.+.+|+++++.++||||+++++++....  ..++||
T Consensus        45 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~  120 (350)
T 1rdq_E           45 RIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVK--LKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVM  120 (350)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhcc--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC--EEEEEE
Confidence            4578999999999999975 68999999986533211  123467889999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++...  ..+++..+..++.+++.||+|||+++  |+||||||+|||++.++.+||+|||+++...... 
T Consensus       121 e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~  196 (350)
T 1rdq_E          121 EYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSLD--LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW  196 (350)
T ss_dssp             ECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECSSCBC
T ss_pred             cCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--cccccCccceEEECCCCCEEEcccccceeccCCcc
Confidence            999999999998743  45899999999999999999999999  9999999999999999999999999998654322 


Q ss_pred             -----hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 007711          460 -----MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  534 (592)
Q Consensus       460 -----~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (592)
                           ..+.+|+......++.++|||||||++|||+||+.||..  ....+.......+...           ++...+.
T Consensus       197 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~~~~~  263 (350)
T 1rdq_E          197 TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFA--DQPIQIYEKIVSGKVR-----------FPSHFSS  263 (350)
T ss_dssp             CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCC-----------CCTTCCH
T ss_pred             cccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCC--CCHHHHHHHHHcCCCC-----------CCCCCCH
Confidence                 223334443444578899999999999999999999953  3444444444443211           1222345


Q ss_pred             HHHHHHHHhcccCCCCCCC-----HHHHHH
Q 007711          535 TLGELIKSCVRADPEKRPT-----MRDIAA  559 (592)
Q Consensus       535 ~l~~l~~~Cl~~dP~~RPs-----~~ev~~  559 (592)
                      .+.+++.+||+.||++||+     ++|+++
T Consensus       264 ~~~~li~~lL~~dp~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          264 DLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             HHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence            7899999999999999998     777764

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.6e-37  Score=318.41  Aligned_cols=247  Identities=15%  Similarity=0.183  Sum_probs=186.2

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.+.||+|+||.||+|.. .++..+|+|++.............+.+.+|++++++++||||+++++++...+  ..++
T Consensus        28 y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~l  105 (345)
T 3hko_A           28 YHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ--YICL  105 (345)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEE
T ss_pred             eeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC--eEEE
Confidence            44568999999999999996 46788999998754332222344678999999999999999999999998877  6799


Q ss_pred             EEeeCCCCCchhhccccC--------------------------------------CCCCCHHHHHHHHHHHHHHHHHhh
Q 007711          379 VFEYAPNGTLFEHIHIKE--------------------------------------SEHLDWGMRLRIAMGMAYCLEHMH  420 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~--------------------------------------~~~l~~~~~~~ia~~ia~gl~yLH  420 (592)
                      ||||+++|+|.+++....                                      ...+++.....|+.+++.||+|||
T Consensus       106 v~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH  185 (345)
T 3hko_A          106 VMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLH  185 (345)
T ss_dssp             EEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999885210                                      112346677889999999999999


Q ss_pred             cCCCCeEeeCcCCCCeEEcCCC--ceEEecCCcchhhhhh-------------hhhhcccccCCC--CCCCCCCcchhhH
Q 007711          421 QLNPPIAHNYLNSSAVHLTEDY--AAKLSDLSFWNEIAMA-------------EMAATSKKLSSA--PSASLESNVYNFG  483 (592)
Q Consensus       421 ~~~~~ivH~dLk~~NiLl~~~~--~~ki~DfGla~~~~~~-------------~~~~~~~~~~~~--~~~s~ksDVwSfG  483 (592)
                      +.+  |+||||||+||+++.++  .+||+|||+++.....             ...+.+||....  ..++.++||||||
T Consensus       186 ~~~--ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG  263 (345)
T 3hko_A          186 NQG--ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAG  263 (345)
T ss_dssp             HTT--EECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHH
T ss_pred             HCC--ccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHH
Confidence            998  99999999999998776  8999999999865321             112233333222  4477899999999


Q ss_pred             HHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          484 VLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       484 vvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      |++|||+||+.||.  .....+.............   .+.    ....+..+.+++.+||+.||++||++.|+++
T Consensus       264 ~il~el~~g~~pf~--~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~  330 (345)
T 3hko_A          264 VLLHLLLMGAVPFP--GVNDADTISQVLNKKLCFE---NPN----YNVLSPLARDLLSNLLNRNVDERFDAMRALQ  330 (345)
T ss_dssp             HHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCCTT---SGG----GGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred             HHHHHHHHCCCCCC--CCChHHHHHHHHhcccccC---Ccc----cccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            99999999999994  3333444444443322111   111    1123457899999999999999999999976

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=1.3e-37  Score=316.17  Aligned_cols=253  Identities=21%  Similarity=0.364  Sum_probs=186.5

Q ss_pred             hhhhcccCcCCCeEEEEEEeC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc-
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF-  374 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~-  374 (592)
                      +.+.+.||+|+||.||+|.+.    .+..||+|.+.....   .....+.|.+|++++++++||||+++++++...... 
T Consensus        36 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  112 (313)
T 3brb_A           36 LILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNS---SQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQG  112 (313)
T ss_dssp             EEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CC---CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-----
T ss_pred             eeeccceeecCCeEEEEEEEeccCCceeEEEEEEEecccc---chhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccC
Confidence            334578999999999999864    345799998864432   233456799999999999999999999999865421 


Q ss_pred             --ceEEEEeeCCCCCchhhccc----cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEec
Q 007711          375 --TRMMVFEYAPNGTLFEHIHI----KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD  448 (592)
Q Consensus       375 --~~~lv~Ey~~~gsL~~~l~~----~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~D  448 (592)
                        ..++|+||+++|+|.+++..    .....+++..+..++.+++.||.|||+.+  |+||||||+||+++.++.+||+|
T Consensus       113 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dikp~NIli~~~~~~kl~D  190 (313)
T 3brb_A          113 IPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRN--FLHRDLAARNCMLRDDMTVCVAD  190 (313)
T ss_dssp             --CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTT--CCCCCCSGGGEEECTTSCEEECS
T ss_pred             CcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCcceEEEcCCCcEEEee
Confidence              34899999999999998843    23456899999999999999999999998  99999999999999999999999


Q ss_pred             CCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCC
Q 007711          449 LSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP  516 (592)
Q Consensus       449 fGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~  516 (592)
                      ||+++.......           .+.+++......++.++||||||+++|||+| |+.||....  ..+.......+.. 
T Consensus       191 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~--~~~~~~~~~~~~~-  267 (313)
T 3brb_A          191 FGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQ--NHEMYDYLLHGHR-  267 (313)
T ss_dssp             CSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTTCC-
T ss_pred             cCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCC--HHHHHHHHHcCCC-
Confidence            999986643211           1222232233347889999999999999999 889985332  2222222222211 


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                               ...+..++..+.+++.+||+.||++||++.++++.|++++...|
T Consensus       268 ---------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp  311 (313)
T 3brb_A          268 ---------LKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLP  311 (313)
T ss_dssp             ---------CCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred             ---------CCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence                     11122344579999999999999999999999999999976544

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=1e-37  Score=314.36  Aligned_cols=248  Identities=12%  Similarity=0.125  Sum_probs=190.7

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      .+.+.||+|+||.||+|.. .++..||||.+.....       .+.+.+|++++.++ +|+|++++++++....  ..++
T Consensus        13 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~--~~~l   83 (298)
T 1csn_A           13 KVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-------APQLRDEYRTYKLLAGCTGIPNVYYFGQEGL--HNVL   83 (298)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT-------SCCHHHHHHHHHHTTTCTTCCCEEEEEEETT--EEEE
T ss_pred             EEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc-------cHHHHHHHHHHHHHhcCCCCCeEEeecCCCc--eeEE
Confidence            3457899999999999995 5789999998754332       23578899999999 7999999999998777  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc-----eEEecCCcch
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA-----AKLSDLSFWN  453 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~-----~ki~DfGla~  453 (592)
                      ||||+ +|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.     +||+|||+++
T Consensus        84 v~e~~-~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~  159 (298)
T 1csn_A           84 VIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIHEKS--LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK  159 (298)
T ss_dssp             EEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred             EEEec-CCCHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEeccCCCCCCCeEEEEECcccc
Confidence            99999 99999999643 346899999999999999999999998  999999999999987776     9999999998


Q ss_pred             hhhhhh----------------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC-ChHHHHHHHhcCCCC
Q 007711          454 EIAMAE----------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQP  516 (592)
Q Consensus       454 ~~~~~~----------------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~  516 (592)
                      ......                ..+.+|+......++.++|||||||++|||+||+.||..... ...+...........
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~  239 (298)
T 1csn_A          160 FYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS  239 (298)
T ss_dssp             ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccC
Confidence            654321                112233333334478899999999999999999999965332 222222221111000


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      .      .........+..+.+++.+||+.||++||++++|++.|+++...
T Consensus       240 ~------~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~  284 (298)
T 1csn_A          240 T------PLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLER  284 (298)
T ss_dssp             S------CHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             c------cHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHh
Confidence            0      00000112345799999999999999999999999999999764

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=8.1e-38  Score=318.98  Aligned_cols=247  Identities=20%  Similarity=0.317  Sum_probs=193.0

Q ss_pred             hhhhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP  373 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  373 (592)
                      +.+.+.||+|+||.||+|+..      .+..||+|.+....    .......|.+|++++++++||||+++++++.... 
T Consensus        27 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-  101 (322)
T 1p4o_A           27 ITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA----SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ-  101 (322)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS----CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS-
T ss_pred             eeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc----CHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCC-
Confidence            345688999999999999864      36789999875322    2234567999999999999999999999998776 


Q ss_pred             cceEEEEeeCCCCCchhhccccC--------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceE
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKE--------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAK  445 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~--------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~k  445 (592)
                       ..++||||+++|+|.+++....        ...+++..+.+++.+++.||+|||+.+  |+||||||+||+++.++.+|
T Consensus       102 -~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dikp~NIli~~~~~~k  178 (322)
T 1p4o_A          102 -PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK--FVHRDLAARNCMVAEDFTVK  178 (322)
T ss_dssp             -SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT--CBCSCCSGGGEEECTTCCEE
T ss_pred             -ccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCC--CccCCCccceEEEcCCCeEE
Confidence             5699999999999999986421        245789999999999999999999998  99999999999999999999


Q ss_pred             EecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcC
Q 007711          446 LSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG  513 (592)
Q Consensus       446 i~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~  513 (592)
                      |+|||+++.......           .+.+|+......++.++||||||+++|||+| |+.||..  ....+.......+
T Consensus       179 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~--~~~~~~~~~~~~~  256 (322)
T 1p4o_A          179 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQG--LSNEQVLRFVMEG  256 (322)
T ss_dssp             ECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTT--SCHHHHHHHHHTT
T ss_pred             ECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCcccc--CCHHHHHHHHHcC
Confidence            999999986643221           1222222222337889999999999999999 8999843  3333333333322


Q ss_pred             CCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      .          ....+..++..+.+++.+||+.||++||++.|+++.|++++.
T Consensus       257 ~----------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~  299 (322)
T 1p4o_A          257 G----------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  299 (322)
T ss_dssp             C----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             C----------cCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence            1          111123344678999999999999999999999999998855

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.7e-37  Score=311.29  Aligned_cols=242  Identities=20%  Similarity=0.282  Sum_probs=190.7

Q ss_pred             cccCcCCCeEEEEEEeC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          304 NVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.||+|+||.||+|.+.   ++..||||.+....    .....+++.+|++++++++||||+++++++.. +  ..++||
T Consensus        16 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~--~~~lv~   88 (287)
T 1u59_A           16 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT----EKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-E--ALMLVM   88 (287)
T ss_dssp             EEEECCTTEEEEEEEEC---CCEEEEEEEECSSC----CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-S--SEEEEE
T ss_pred             ccccccCceeEEEeEeccCCCcceEEEEecCCcc----chhHHHHHHHHHHHHHhCCCCCEeEEEEEecC-C--CcEEEE
Confidence            48999999999999863   57789999886432    23456789999999999999999999999944 3  468999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.......
T Consensus        89 e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~  165 (287)
T 1u59_A           89 EMAGGGPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEEKN--FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDS  165 (287)
T ss_dssp             ECCTTEEHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEEETTEEEECCCTTCEECTTCSC
T ss_pred             EeCCCCCHHHHHHh-CCccCCHHHHHHHHHHHHHHHHHHHHCC--EeeCCCchheEEEcCCCCEEECcccceeeeccCcc
Confidence            99999999999863 3456899999999999999999999998  99999999999999999999999999986642211


Q ss_pred             hh------cccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          461 AA------TSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       461 ~~------~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      ..      ..+..+.+||      ++.++||||||+++|||+| |+.||....  ..+.......+..          ..
T Consensus       166 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~--~~~~~~~i~~~~~----------~~  233 (287)
T 1u59_A          166 YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--GPEVMAFIEQGKR----------ME  233 (287)
T ss_dssp             EECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--THHHHHHHHTTCC----------CC
T ss_pred             eeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC--HHHHHHHHhcCCc----------CC
Confidence            10      0012234443      6789999999999999999 999995332  2333333222210          11


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      .+..++..+.+++.+||+.||++||++.++++.|+++...
T Consensus       234 ~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  273 (287)
T 1u59_A          234 CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  273 (287)
T ss_dssp             CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            2233456799999999999999999999999999998754

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=5.1e-37  Score=325.94  Aligned_cols=242  Identities=18%  Similarity=0.253  Sum_probs=189.2

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.+.||+|+||.||+|.. .+|..+|+|++.....   .....+.+.+|++++++++||||+++++++...+  ..++
T Consensus        13 Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~---~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~--~~~l   87 (444)
T 3soa_A           13 YQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKL---SARDHQKLEREARICRLLKHPNIVRLHDSISEEG--HHYL   87 (444)
T ss_dssp             EEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSC---HHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSS--EEEE
T ss_pred             eEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccC---CHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECC--EEEE
Confidence            44568999999999999985 4688999998865432   2334567999999999999999999999998877  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc---CCCceEEecCCcchhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT---EDYAAKLSDLSFWNEI  455 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~---~~~~~ki~DfGla~~~  455 (592)
                      ||||+++|+|.+++...  ..+++.....++.+++.||+|||+.+  |+||||||+|||++   +++.+||+|||+++..
T Consensus        88 v~E~~~gg~L~~~i~~~--~~~~e~~~~~i~~qil~aL~~lH~~g--ivHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~  163 (444)
T 3soa_A           88 IFDLVTGGELFEDIVAR--EYYSEADASHCIQQILEAVLHCHQMG--VVHRNLKPENLLLASKLKGAAVKLADFGLAIEV  163 (444)
T ss_dssp             EECCCBCCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSSTTEEESBSSTTCCEEECCCSSCBCC
T ss_pred             EEEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEEeccCCCCcEEEccCceeEEe
Confidence            99999999999988643  46899999999999999999999999  99999999999999   4578999999999765


Q ss_pred             hhhh---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          456 AMAE---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       456 ~~~~---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      ....         ..+.+|+......++.++|||||||++|||++|+.||..  .+..+.......+.....   .+.. 
T Consensus       164 ~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~--~~~~~~~~~i~~~~~~~~---~~~~-  237 (444)
T 3soa_A          164 EGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWD--EDQHRLYQQIKAGAYDFP---SPEW-  237 (444)
T ss_dssp             CTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHTCCCCC---TTTT-
T ss_pred             cCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHhCCCCCC---cccc-
Confidence            4321         223334433444578899999999999999999999943  334444444443322211   1111 


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                         ...+..+.+++.+||+.||++|||+.|+++
T Consensus       238 ---~~~s~~~~~li~~~L~~dP~~Rpta~e~L~  267 (444)
T 3soa_A          238 ---DTVTPEAKDLINKMLTINPSKRITAAEALK  267 (444)
T ss_dssp             ---TTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ---ccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence               223457899999999999999999999986

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1.2e-37  Score=312.74  Aligned_cols=247  Identities=17%  Similarity=0.230  Sum_probs=184.8

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.+.||+|+||.||+|+..+|..+|+|++......   ....+.+.+|++++++++||||+++++++...+  ..++|||
T Consensus         6 ~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e   80 (288)
T 1ob3_A            6 GLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKED---EGIPSTTIREISILKELKHSNIVKLYDVIHTKK--RLVLVFE   80 (288)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGG---GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS--CEEEEEE
T ss_pred             hhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccc---cccchhHHHHHHHHHhcCCCCEeeeeeEEccCC--eEEEEEE
Confidence            45789999999999999988999999988654322   122356889999999999999999999998876  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh--
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~--  459 (592)
                      |+++ +|.+++.. ....+++.....++.|++.||+|||+.+  |+||||||+||+++.++.+||+|||+++......  
T Consensus        81 ~~~~-~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  156 (288)
T 1ob3_A           81 HLDQ-DLKKLLDV-CEGGLESVTAKSFLLQLLNGIAYCHDRR--VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK  156 (288)
T ss_dssp             CCSE-EHHHHHHT-STTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----
T ss_pred             ecCC-CHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEcCCCCEEEeECccccccCccccc
Confidence            9975 89888863 3356899999999999999999999998  9999999999999999999999999998654221  


Q ss_pred             -------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-----CCcc-----cc
Q 007711          460 -------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----PLQQ-----FV  521 (592)
Q Consensus       460 -------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~  521 (592)
                             ..+.+|+... ...++.++|||||||++|||+||+.||...  ...+..........     ....     ..
T Consensus       157 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (288)
T 1ob3_A          157 YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV--SEADQLMRIFRILGTPNSKNWPNVTELPKY  234 (288)
T ss_dssp             -----CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred             cccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHHCCCChhhchhhhccccc
Confidence                   1122333222 234788999999999999999999999532  22222222211000     0000     00


Q ss_pred             CCCC--------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 DPTL--------SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ~~~~--------~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ++..        ..+....+..+.+++.+||+.||++|||++|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          235 DPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             CTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            1110        0111234467889999999999999999999875

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=2.7e-37  Score=323.78  Aligned_cols=249  Identities=15%  Similarity=0.247  Sum_probs=187.9

Q ss_pred             hhhhcccCcC--CCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          300 EDFSNVIGSS--PIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       300 ~~~~~~lG~G--~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.+.+.||+|  +||.||+|+.. +|..||||++......   ....+.+.+|++++++++|||||++++++...+  ..
T Consensus        27 y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~  101 (389)
T 3gni_B           27 YELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACS---NEMVTFLQGELHVSKLFNHPNIVPYRATFIADN--EL  101 (389)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EE
T ss_pred             EEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccC---hHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECC--EE
Confidence            3456889999  99999999975 6899999998754322   345677889999999999999999999999877  67


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|||||++|+|.+++.......+++..+..++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||.+....
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~  179 (389)
T 3gni_B          102 WVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMG--YVHRSVKASHILISVDGKVYLSGLRSNLSMI  179 (389)
T ss_dssp             EEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred             EEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence            99999999999999997655567999999999999999999999999  9999999999999999999999999876432


Q ss_pred             hh----------------hhhhcccccCCC--CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCc
Q 007711          457 MA----------------EMAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ  518 (592)
Q Consensus       457 ~~----------------~~~~~~~~~~~~--~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~  518 (592)
                      ..                ...+.+|+....  ..++.++|||||||++|||+||+.||.......  .......+.  ..
T Consensus       180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~--~~~~~~~~~--~~  255 (389)
T 3gni_B          180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQ--MLLEKLNGT--VP  255 (389)
T ss_dssp             ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTT--HHHHC--------
T ss_pred             cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHhcCC--CC
Confidence            11                112334443332  357889999999999999999999995432211  111111000  00


Q ss_pred             cccC-------------------------------------CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 QFVD-------------------------------------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 ~~~~-------------------------------------~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+.+                                     ......+......+.+++.+||+.||++|||+.|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~  333 (389)
T 3gni_B          256 CLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN  333 (389)
T ss_dssp             --------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             ccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence            0000                                     0000112233467899999999999999999999985

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=2e-37  Score=311.48  Aligned_cols=244  Identities=23%  Similarity=0.304  Sum_probs=188.2

Q ss_pred             hhc-ccCcCCCeEEEEEEe---CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          302 FSN-VIGSSPIGTVYKGTL---SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       302 ~~~-~lG~G~~g~Vy~g~~---~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+ .||+|+||.||+|.+   ..+..||||++......   ....++|.+|++++++++||||+++++++.. +  ..+
T Consensus        20 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~--~~~   93 (291)
T 1xbb_A           20 LEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAND---PALKDELLAEANVMQQLDNPYIVRMIGICEA-E--SWM   93 (291)
T ss_dssp             EEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC--------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-S--SEE
T ss_pred             hccCccccccCeeeEeeeecCCCceeeEEEEeecccccC---HHHHHHHHHHHHHHHhCCCCCEEEEEEEECC-C--CcE
Confidence            344 899999999999964   24678999988654321   2346789999999999999999999999943 3  468


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +||||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....
T Consensus        94 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~  169 (291)
T 1xbb_A           94 LVMEMAELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLEESN--FVHRDLAARNVLLVTQHYAKISDFGLSKALRA  169 (291)
T ss_dssp             EEEECCTTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred             EEEEeCCCCCHHHHHHh--CcCCCHHHHHHHHHHHHHHHHHHHhCC--eEcCCCCcceEEEeCCCcEEEccCCcceeecc
Confidence            99999999999999974  346899999999999999999999998  99999999999999999999999999876532


Q ss_pred             hhhh------hcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          458 AEMA------ATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       458 ~~~~------~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ....      ...+..+.+||      ++.++||||||+++|||+| |+.||..  ....+......... .        
T Consensus       170 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~~~~~~~-~--------  238 (291)
T 1xbb_A          170 DENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRG--MKGSEVTAMLEKGE-R--------  238 (291)
T ss_dssp             TCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTT--CCHHHHHHHHHTTC-C--------
T ss_pred             CCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHHcCC-C--------
Confidence            2111      01112234443      5778999999999999999 9999953  23333333222221 1        


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                       ...+..++..+.+++.+||+.||++||++.++++.|+++...
T Consensus       239 -~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~  280 (291)
T 1xbb_A          239 -MGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  280 (291)
T ss_dssp             -CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             -CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence             112233446799999999999999999999999999998643

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=2.3e-38  Score=322.67  Aligned_cols=249  Identities=20%  Similarity=0.296  Sum_probs=191.9

Q ss_pred             hhhcccCcCCCeEEEEEEeC-----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-----~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      .+.+.||+|+||.||++.+.     ++..||||++....    .....+.|.+|++++++++||||+++++++...+...
T Consensus        34 ~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (318)
T 3lxp_A           34 KKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA----GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAAS  109 (318)
T ss_dssp             EEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC----CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTE
T ss_pred             hhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc----ChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCce
Confidence            34578999999999998763     67889999886432    2345677999999999999999999999998754336


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++|+|.+++...   .+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++..
T Consensus       110 ~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~i~~~l~~~l~~LH~~~--ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~  184 (318)
T 3lxp_A          110 LQLVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLHAQH--YIHRDLAARNVLLDNDRLVKIGDFGLAKAV  184 (318)
T ss_dssp             EEEEECCCTTCBHHHHGGGS---CCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred             EEEEEecccCCcHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCchheEEEcCCCCEEECCccccccc
Confidence            78999999999999998643   4899999999999999999999999  999999999999999999999999999866


Q ss_pred             hhhhh------hhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHH------------HHHHHh
Q 007711          456 AMAEM------AATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLED------------WAADYL  511 (592)
Q Consensus       456 ~~~~~------~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~------------~~~~~~  511 (592)
                      .....      ....+..+.+||      ++.++||||||+++|||+||+.||.........            ......
T Consensus       185 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (318)
T 3lxp_A          185 PEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELL  264 (318)
T ss_dssp             CTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             cccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHH
Confidence            43211      111112244443      577899999999999999999998532110000            011111


Q ss_pred             cCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          512 SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ..         ......+..++..+.+++.+||+.||++|||+.|+++.|+++...
T Consensus       265 ~~---------~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~  311 (318)
T 3lxp_A          265 ER---------GERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEK  311 (318)
T ss_dssp             HT---------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hc---------ccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHh
Confidence            11         111122334456799999999999999999999999999998643

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=3.1e-37  Score=321.15  Aligned_cols=239  Identities=17%  Similarity=0.274  Sum_probs=187.0

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||++... ++..||+|++.......  ....+.+.+|+++++.++|||||++++++....  ..++|
T Consensus        18 ~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~--~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~--~~~lv   93 (384)
T 4fr4_A           18 EILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVE--RNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEE--DMFMV   93 (384)
T ss_dssp             EEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhccc--HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--EEEEE
Confidence            34588999999999999964 57889999886433111  123467889999999999999999999998877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      |||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++..... 
T Consensus        94 ~e~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH~~g--ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~  169 (384)
T 4fr4_A           94 VDLLLGGDLRYHLQQ--NVHFKEETVKLFICELVMALDYLQNQR--IIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET  169 (384)
T ss_dssp             ECCCTTEEHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred             EecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCcHHHeEECCCCCEEEeccceeeeccCCC
Confidence            999999999999863  456899999999999999999999999  999999999999999999999999999865322 


Q ss_pred             -------hhhhcccccCC---CCCCCCCCcchhhHHHHHHHHhCCCcccCCCC-ChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          459 -------EMAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       459 -------~~~~~~~~~~~---~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                             ...+.+|+...   ...++.++|||||||++|||+||+.||..... ...+..........           .
T Consensus       170 ~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~-----------~  238 (384)
T 4fr4_A          170 QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVV-----------T  238 (384)
T ss_dssp             CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCC-----------C
T ss_pred             ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhccc-----------C
Confidence                   12233444332   22368899999999999999999999964433 33333333322211           1


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCC-HHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPT-MRDIA  558 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs-~~ev~  558 (592)
                      ++...+..+.+++.+||+.||++||+ ++++.
T Consensus       239 ~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~  270 (384)
T 4fr4_A          239 YPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQ  270 (384)
T ss_dssp             CCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred             CCCcCCHHHHHHHHHHhcCCHhHhcccHHHHH
Confidence            22233457899999999999999998 66654

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=8.1e-37  Score=318.93  Aligned_cols=241  Identities=16%  Similarity=0.244  Sum_probs=187.7

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.+.||+|+||.||+|... +|..+|+|.+....     ......+.+|++++++++||||+++++++....  ..++
T Consensus        53 y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--~~~l  125 (387)
T 1kob_A           53 YDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY-----PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKY--EMVL  125 (387)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-----HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSS--EEEE
T ss_pred             eEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc-----hhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCC--EEEE
Confidence            345688999999999999964 68889999876432     223457899999999999999999999998876  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC--CCceEEecCCcchhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE--DYAAKLSDLSFWNEIA  456 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~--~~~~ki~DfGla~~~~  456 (592)
                      ||||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.  ++.+||+|||+++...
T Consensus       126 v~E~~~gg~L~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~g--ivHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~  202 (387)
T 1kob_A          126 ILEFLSGGELFDRIAA-EDYKMSEAEVINYMRQACEGLKHMHEHS--IVHLDIKPENIMCETKKASSVKIIDFGLATKLN  202 (387)
T ss_dssp             EEECCCCCBHHHHTTC-TTCCBCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSTTCCCEEECCCTTCEECC
T ss_pred             EEEcCCCCcHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecccchHHeEEecCCCCceEEEecccceecC
Confidence            9999999999999863 3346899999999999999999999999  999999999999984  4789999999998654


Q ss_pred             hh--------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          457 MA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       457 ~~--------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      ..        ...+.+||......++.++|||||||++|||+||+.||..  ....+............    ++   ..
T Consensus       203 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~--~~~~~~~~~i~~~~~~~----~~---~~  273 (387)
T 1kob_A          203 PDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAG--EDDLETLQNVKRCDWEF----DE---DA  273 (387)
T ss_dssp             TTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCC--SSHHHHHHHHHHCCCCC----CS---ST
T ss_pred             CCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCC----Cc---cc
Confidence            22        1223334443344478899999999999999999999953  33333333333221111    11   11


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+.++.+++.+||+.||++|||+.|+++
T Consensus       274 ~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  304 (387)
T 1kob_A          274 FSSVSPEAKDFIKNLLQKEPRKRLTVHDALE  304 (387)
T ss_dssp             TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             cccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence            1223457899999999999999999999976

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=313.28  Aligned_cols=256  Identities=18%  Similarity=0.190  Sum_probs=185.3

Q ss_pred             HhhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC---CCCceeeeeEEEecCCC-
Q 007711          299 CEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV---NHKNFVNLIGFCEEEEP-  373 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l---~H~niv~l~g~~~~~~~-  373 (592)
                      .+.+.+.||+|+||.||+|+. .++..||+|++...............+.+|+++++++   +||||++++++|..... 
T Consensus        10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~   89 (308)
T 3g33_A           10 RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTD   89 (308)
T ss_dssp             CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSS
T ss_pred             ceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCC
Confidence            345568899999999999995 5688999999876543222222234566777777666   49999999999976542 


Q ss_pred             --cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCc
Q 007711          374 --FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF  451 (592)
Q Consensus       374 --~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGl  451 (592)
                        ...++||||+. |+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+
T Consensus        90 ~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dlkp~Nil~~~~~~~kl~Dfg~  166 (308)
T 3g33_A           90 REIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANC--IVHRDLKPENILVTSGGTVKLADFGL  166 (308)
T ss_dssp             SEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCTTTEEECTTSCEEECSCSC
T ss_pred             CceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEcCCCCEEEeeCcc
Confidence              13689999997 69999997655556999999999999999999999999  99999999999999999999999999


Q ss_pred             chhhhhhhh--------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC-----Cc
Q 007711          452 WNEIAMAEM--------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP-----LQ  518 (592)
Q Consensus       452 a~~~~~~~~--------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~-----~~  518 (592)
                      ++.......        .+.+|+......++.++|||||||++|||+||+.||...  ...+...........     +.
T Consensus       167 a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~  244 (308)
T 3g33_A          167 ARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN--SEADQLGKIFDLIGLPPEDDWP  244 (308)
T ss_dssp             TTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSC
T ss_pred             ccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCChhhcc
Confidence            986542211        122223222334789999999999999999999999532  233332222211000     00


Q ss_pred             c-------ccCCCCC----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 Q-------FVDPTLS----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 ~-------~~~~~~~----~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .       ...+...    ....+....+.+++.+||+.||++|||+.|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          245 RDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             SSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             chhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence            0       0000000    001123467899999999999999999999875

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=7.4e-38  Score=320.17  Aligned_cols=255  Identities=18%  Similarity=0.243  Sum_probs=191.1

Q ss_pred             hhhhcccCcCCCeEEEEEEe-----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  374 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  374 (592)
                      ..+.+.||+|+||.||+|++     .++..||||++....     ....+.|.+|++++++++|+||+++++++...+..
T Consensus        25 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   99 (327)
T 3lxl_A           25 LKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG-----PDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQ   99 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC-----HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSC
T ss_pred             hhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC-----HHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCc
Confidence            34568899999999999985     367899999875432     33456799999999999999999999998754433


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..++||||+++|+|.+++... ...+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  176 (327)
T 3lxl_A          100 SLRLVMEYLPSGCLRDFLQRH-RARLDASRLLLYSSQICKGMEYLGSRR--CVHRDLAARNILVESEAHVKIADFGLAKL  176 (327)
T ss_dssp             EEEEEEECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEEETTEEEECCGGGCEE
T ss_pred             eEEEEEeecCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCChhhEEECCCCCEEEccccccee
Confidence            678999999999999998642 235899999999999999999999998  99999999999999999999999999986


Q ss_pred             hhhhhhh------hcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCC------------hHHHHHHH
Q 007711          455 IAMAEMA------ATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGS------------LEDWAADY  510 (592)
Q Consensus       455 ~~~~~~~------~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~------------~~~~~~~~  510 (592)
                      .......      ...+..+.+||      ++.++||||||+++|||+||+.||......            ........
T Consensus       177 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (327)
T 3lxl_A          177 LPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLEL  256 (327)
T ss_dssp             CCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHH
T ss_pred             cccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHH
Confidence            5432211      01112244444      578999999999999999999998421110            00111111


Q ss_pred             hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCC
Q 007711          511 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDG  571 (592)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~  571 (592)
                      ...         ......+..++..+.+++.+||+.||++|||+.|+++.|+.+.......
T Consensus       257 ~~~---------~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~  308 (327)
T 3lxl_A          257 LEE---------GQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRGC  308 (327)
T ss_dssp             HHT---------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-------
T ss_pred             hhc---------ccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcCc
Confidence            111         1111223344567999999999999999999999999999997665443

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.2e-37  Score=314.34  Aligned_cols=253  Identities=22%  Similarity=0.360  Sum_probs=184.7

Q ss_pred             HHhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC--CCCceeeeeEEEecCCC--
Q 007711          298 ACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV--NHKNFVNLIGFCEEEEP--  373 (592)
Q Consensus       298 ~~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l--~H~niv~l~g~~~~~~~--  373 (592)
                      ..+.+.+.||+|+||.||+|+.. +..||||++....        ...+..|.+++...  +||||+++++++.....  
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--------~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~  107 (337)
T 3mdy_A           37 KQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE--------EASWFRETEIYQTVLMRHENILGFIAADIKGTGSW  107 (337)
T ss_dssp             HHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG--------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGG
T ss_pred             cceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc--------cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCC
Confidence            34556789999999999999985 8899999885322        23455566666554  89999999999987631  


Q ss_pred             cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC------CCCeEeeCcCCCCeEEcCCCceEEe
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL------NPPIAHNYLNSSAVHLTEDYAAKLS  447 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~------~~~ivH~dLk~~NiLl~~~~~~ki~  447 (592)
                      ...++||||+++|+|.++++.   ..+++..+..++.+++.||+|||+.      .+.|+||||||+|||++.++.+||+
T Consensus       108 ~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~  184 (337)
T 3mdy_A          108 TQLYLITDYHENGSLYDYLKS---TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIA  184 (337)
T ss_dssp             CEEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEEC
T ss_pred             CceEEEEeccCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEE
Confidence            257999999999999999963   3589999999999999999999988      2239999999999999999999999


Q ss_pred             cCCcchhhhhhhhh-------hcccccCCCCC------CCCC------CcchhhHHHHHHHHhC----------CCcccC
Q 007711          448 DLSFWNEIAMAEMA-------ATSKKLSSAPS------ASLE------SNVYNFGVLLFEMVTG----------RLPYLV  498 (592)
Q Consensus       448 DfGla~~~~~~~~~-------~~~~~~~~~~~------~s~k------sDVwSfGvvl~El~tG----------~~P~~~  498 (592)
                      |||+++........       ...+..+.+||      ...+      +|||||||++|||+||          +.||..
T Consensus       185 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~  264 (337)
T 3mdy_A          185 DLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHD  264 (337)
T ss_dssp             CCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred             eCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhh
Confidence            99999765322111       01122333443      3333      8999999999999999          666642


Q ss_pred             CC---CChHHHHHHHhcCCCCCccccCCCCCC--CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          499 DN---GSLEDWAADYLSGVQPLQQFVDPTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       499 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      ..   .....+. ..... ..    ..+....  ....++.++.+++.+||+.||++|||+.|+++.|+++....
T Consensus       265 ~~~~~~~~~~~~-~~~~~-~~----~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~  333 (337)
T 3mdy_A          265 LVPSDPSYEDMR-EIVCI-KK----LRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ  333 (337)
T ss_dssp             TSCSSCCHHHHH-HHHTT-SC----CCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             hcCCCCchhhhH-HHHhh-hc----cCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence            21   1112221 11111 01    1111110  12367788999999999999999999999999999997654

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.5e-37  Score=316.49  Aligned_cols=247  Identities=17%  Similarity=0.258  Sum_probs=175.1

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... +|..||+|.+.......    ..+.+.+|++++++++||||+++++++...+  ..++||
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~   82 (317)
T 2pmi_A            9 QLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEG----TPSTAIREISLMKELKHENIVRLYDVIHTEN--KLTLVF   82 (317)
T ss_dssp             ----------CEEEEEECSSSCCEEEEEEEECCSTTC----SCHHHHHHHHHHTTCCBTTBCCEEEEECCTT--EEEEEE
T ss_pred             EeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccc----cHHHHHHHHHHHHhcCCCCcceEEEEEEECC--eEEEEE
Confidence            4578999999999999864 68899999986544222    2356889999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhcccc----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          381 EYAPNGTLFEHIHIK----ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~----~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ||++ |+|.+++...    ....+++..+..++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus        83 e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~--ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  159 (317)
T 2pmi_A           83 EFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENK--ILHRDLKPQNLLINKRGQLKLGDFGLARAFG  159 (317)
T ss_dssp             ECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred             EecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence            9998 6999888643    2246899999999999999999999998  9999999999999999999999999998654


Q ss_pred             hhh---------hhhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC-----Cccc-
Q 007711          457 MAE---------MAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP-----LQQF-  520 (592)
Q Consensus       457 ~~~---------~~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~-----~~~~-  520 (592)
                      ...         ..+.+||.... ..++.++|||||||++|||+||+.||...  ...+...........     +... 
T Consensus       160 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~  237 (317)
T 2pmi_A          160 IPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGT--NDEEQLKLIFDIMGTPNESLWPSVT  237 (317)
T ss_dssp             SCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCSCCTTTCGGGG
T ss_pred             CCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhCCCChhHhhhhh
Confidence            221         12233333222 34688999999999999999999999533  222222222110000     0000 


Q ss_pred             ----cCCCCC-----C--------CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 ----VDPTLS-----S--------FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ----~~~~~~-----~--------~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          ..+...     .        ........+.+++.+||+.||++|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  293 (317)
T 2pmi_A          238 KLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH  293 (317)
T ss_dssp             GCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence                000000     0        01123457899999999999999999999875

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=2.6e-37  Score=311.61  Aligned_cols=246  Identities=24%  Similarity=0.358  Sum_probs=186.0

Q ss_pred             hhcccCcCCCeEEEEEEeCC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          302 FSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.||+|+||.||+|+..+    ...+|+|.+....    .....+.|.+|++++++++||||++++++|...+. ..+
T Consensus        29 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~~  103 (298)
T 3f66_A           29 FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT----DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SPL  103 (298)
T ss_dssp             EEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCC----SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS-CCE
T ss_pred             hcceeeecCCceEEEEEEecCCCceeEEEEEecccCC----CHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCC-ceE
Confidence            45789999999999998643    2246777664321    23445779999999999999999999999865442 468


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +||||+++|+|.++++. ....+++..+..++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++....
T Consensus       104 ~v~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~ql~~~l~~lH~~~--i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~  180 (298)
T 3f66_A          104 VVLPYMKHGDLRNFIRN-ETHNPTVKDLIGFGLQVAKGMKYLASKK--FVHRDLAARNCMLDEKFTVKVADFGLARDMYD  180 (298)
T ss_dssp             EEEECCTTCBHHHHHHC-TTCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECTTCCEEECSCGGGCCCSC
T ss_pred             EEEeCCCCCCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCchheEEECCCCCEEECcccccccccc
Confidence            99999999999999964 3456899999999999999999999998  99999999999999999999999999976532


Q ss_pred             hhh-------------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          458 AEM-------------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       458 ~~~-------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ...             .+.+++......++.++||||||+++|||+| |..||.....  .+.......+...       
T Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~-------  251 (298)
T 3f66_A          181 KEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT--FDITVYLLQGRRL-------  251 (298)
T ss_dssp             GGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCT--TTHHHHHHTTCCC-------
T ss_pred             cchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCH--HHHHHHHhcCCCC-------
Confidence            221             1122222222346889999999999999999 5556633221  1222222222111       


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                         ..+..++..+.+++.+||+.||++||++.|+++.|+++...
T Consensus       252 ---~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~  292 (298)
T 3f66_A          252 ---LQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  292 (298)
T ss_dssp             ---CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             ---CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence               11222345789999999999999999999999999999764

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=7.2e-37  Score=315.59  Aligned_cols=237  Identities=16%  Similarity=0.226  Sum_probs=176.0

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. ++..||||++....       ..+.+.+|++++++++||||+++++++....  ..++||
T Consensus        57 ~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~lv~  127 (349)
T 2w4o_A           57 VESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-------DKKIVRTEIGVLLRLSHPNIIKLKEIFETPT--EISLVL  127 (349)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-----------------CHHHHHCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-------hHHHHHHHHHHHHhCCCCCCcceeeeEecCC--eEEEEE
Confidence            4578999999999999975 57889999886432       2356889999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC---CCceEEecCCcchhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~---~~~~ki~DfGla~~~~~  457 (592)
                      ||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.   ++.+||+|||+++....
T Consensus       128 e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~  203 (349)
T 2w4o_A          128 ELVTGGELFDRIVE--KGYYSERDAADAVKQILEAVAYLHENG--IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEH  203 (349)
T ss_dssp             CCCCSCBHHHHHTT--CSSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEESSSSTTCCEEECCCC-------
T ss_pred             EeCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCcccEEEecCCCCCCEEEccCccccccCc
Confidence            99999999999863  346899999999999999999999998  999999999999975   88999999999986543


Q ss_pred             hh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          458 AE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       458 ~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      ..        ..+.+||......++.++|||||||++|||+||+.||...... ..............   ..+    ..
T Consensus       204 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~~~~~i~~~~~~~---~~~----~~  275 (349)
T 2w4o_A          204 QVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD-QFMFRRILNCEYYF---ISP----WW  275 (349)
T ss_dssp             ---------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCH-HHHHHHHHTTCCCC---CTT----TT
T ss_pred             ccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCccc-HHHHHHHHhCCCcc---CCc----hh
Confidence            21        2233444444445789999999999999999999999543322 22223333221111   111    12


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...+..+.+++.+||+.||++|||+.|+++
T Consensus       276 ~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          276 DEVSLNAKDLVRKLIVLDPKKRLTTFQALQ  305 (349)
T ss_dssp             TTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             hhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            233457899999999999999999999876

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=5.4e-37  Score=313.70  Aligned_cols=240  Identities=17%  Similarity=0.233  Sum_probs=178.4

Q ss_pred             hhhhcccCcCCCeEEEEEEe----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          300 EDFSNVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.+.||+|+||.||+++.    .++..+|+|++....... .......+.+|++++++++||||+++++++...+  .
T Consensus        19 y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~   95 (327)
T 3a62_A           19 FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVR-NAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGG--K   95 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC---------------HHHHHHHCCCTTBCCEEEEEECSS--C
T ss_pred             eEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhh-hhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCC--E
Confidence            34568899999999999996    478999999986543211 1123456888999999999999999999998877  6


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++|+|.+++...  ..+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++..
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~  171 (327)
T 3a62_A           96 LYLILEYLSGGELFMQLERE--GIFMEDTACFYLAEISMALGHLHQKG--IIYRDLKPENIMLNHQGHVKLTDFGLCKES  171 (327)
T ss_dssp             EEEEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred             EEEEEeCCCCCcHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCC--EEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence            79999999999999998643  45889999999999999999999998  999999999999999999999999998764


Q ss_pred             hhhh---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          456 AMAE---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       456 ~~~~---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      ....         ..+.+|+......++.++|||||||++|||++|+.||..  ....+...........          
T Consensus       172 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~--~~~~~~~~~i~~~~~~----------  239 (327)
T 3a62_A          172 IHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTG--ENRKKTIDKILKCKLN----------  239 (327)
T ss_dssp             -------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHTCCC----------
T ss_pred             ccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCC----------
Confidence            3221         112233333333478899999999999999999999943  3344444444433211          


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                       ++...+..+.+++.+||+.||++||     ++.|+++
T Consensus       240 -~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          240 -LPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             -CCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred             -CCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence             1222345789999999999999999     6777765

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=8.4e-37  Score=307.72  Aligned_cols=248  Identities=23%  Similarity=0.314  Sum_probs=189.0

Q ss_pred             hcccCcCCCeEEEEEEeCC-C---cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          303 SNVIGSSPIGTVYKGTLSN-G---VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~-~---~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      .+.||+|+||.||+|.+.+ +   ..+|+|.+....    .....+.|.+|++++++++||||+++++++...+. ..++
T Consensus        26 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~~~  100 (298)
T 3pls_A           26 DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRIT----EMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEG-LPHV  100 (298)
T ss_dssp             EEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCC----SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS-CCEE
T ss_pred             CceeccCCCceEEEEEEecCCCceeeeeeeeccccc----cHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCC-CcEE
Confidence            4789999999999998532 2   268888774321    23446789999999999999999999999976552 3489


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |+||+.+|+|.+++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++.....
T Consensus       101 v~e~~~~~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~  177 (298)
T 3pls_A          101 LLPYMCHGDLLQFIRS-PQRNPTVKDLISFGLQVARGMEYLAEQK--FVHRDLAARNCMLDESFTVKVADFGLARDILDR  177 (298)
T ss_dssp             EECCCTTCBHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECTTCCEEECCTTSSCTTTTG
T ss_pred             EEecccCCCHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCcceEEEcCCCcEEeCcCCCcccccCC
Confidence            9999999999999964 3457899999999999999999999998  999999999999999999999999999865332


Q ss_pred             hh-------------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          459 EM-------------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       459 ~~-------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ..             .+.+++......++.++||||||+++|||+||..|+... ....+......... ..        
T Consensus       178 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~-~~~~~~~~~~~~~~-~~--------  247 (298)
T 3pls_A          178 EYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRH-IDPFDLTHFLAQGR-RL--------  247 (298)
T ss_dssp             GGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTT-SCGGGHHHHHHTTC-CC--------
T ss_pred             cccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCcc-CCHHHHHHHhhcCC-CC--------
Confidence            21             122233333445788999999999999999966554322 22222222222211 10        


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                       ..+...+..+.+++.+||+.||.+|||+.++++.|++++....
T Consensus       248 -~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~  290 (298)
T 3pls_A          248 -PQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALL  290 (298)
T ss_dssp             -CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCC
T ss_pred             -CCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHh
Confidence             1122334578999999999999999999999999999976543

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=9.2e-37  Score=305.77  Aligned_cols=241  Identities=19%  Similarity=0.296  Sum_probs=184.6

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.+.||+|+||.||++.. .++..+|+|.+......    ...+.+.+|++++++++||||+++++++....  ..++
T Consensus        24 y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~l   97 (285)
T 3is5_A           24 FIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQ----VPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYH--NMYI   97 (285)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCC----SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEE
T ss_pred             eeecceeccCCCeEEEEEEEccCCceEEEEEeeccccc----hhHHHHHHHHHHHHhCCCchHHhHHHheecCC--eEEE
Confidence            44568999999999999996 46889999988654422    23567899999999999999999999998776  6799


Q ss_pred             EEeeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE---cCCCceEEecCCcch
Q 007711          379 VFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL---TEDYAAKLSDLSFWN  453 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl---~~~~~~ki~DfGla~  453 (592)
                      ||||+++|+|.+++...  ....+++..+..|+.+++.||+|||+.+  |+||||||+||++   +.++.+||+|||+++
T Consensus        98 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~  175 (285)
T 3is5_A           98 VMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQH--VVHKDLKPENILFQDTSPHSPIKIIDFGLAE  175 (285)
T ss_dssp             EECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEESSSSTTCCEEECCCCCCC
T ss_pred             EEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC--EEECCCCHHHEEEecCCCCCCEEEEeeecce
Confidence            99999999999988542  3467899999999999999999999998  9999999999999   456789999999997


Q ss_pred             hhhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          454 EIAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       454 ~~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ......        ..+.+|+... ..++.++||||||+++|||+||+.||..  ....+..............    ..
T Consensus       176 ~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~--~~~~~~~~~~~~~~~~~~~----~~  248 (285)
T 3is5_A          176 LFKSDEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTG--TSLEEVQQKATYKEPNYAV----EC  248 (285)
T ss_dssp             C----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCCC------
T ss_pred             ecCCcccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCC--CCHHHHHhhhccCCccccc----cc
Confidence            654322        1222333222 2468899999999999999999999943  3333333333222111110    00


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..    .+..+.+++.+||+.||++|||+.|+++
T Consensus       249 ~~----~~~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          249 RP----LTPQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             CC----CCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             Cc----CCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            11    2346889999999999999999999875

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=5.6e-37  Score=320.34  Aligned_cols=235  Identities=20%  Similarity=0.240  Sum_probs=180.8

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ++.+.||+|+||.||+|+.. ++..+|+|++.......  ....+.+..|..++.++ +||||+++++++....  ..++
T Consensus        55 ~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~--~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~--~~~l  130 (396)
T 4dc2_A           55 DLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVND--DEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES--RLFF  130 (396)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC------CCHHHHHHHHHHHHTTCTTBCCEEEEEECSS--EEEE
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccC--HHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECC--EEEE
Confidence            34588999999999999975 57889999987543322  12234577899999887 8999999999998877  7899


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh-
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-  457 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~-  457 (592)
                      ||||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.... 
T Consensus       131 V~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~g--ivHrDLKp~NILl~~~g~ikL~DFGla~~~~~~  206 (396)
T 4dc2_A          131 VIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP  206 (396)
T ss_dssp             EEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred             EEEcCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--EEeccCCHHHEEECCCCCEEEeecceeeecccC
Confidence            99999999999988643  46899999999999999999999999  99999999999999999999999999975321 


Q ss_pred             --------hhhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC------ChHH-HHHHHhcCCCCCccccC
Q 007711          458 --------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG------SLED-WAADYLSGVQPLQQFVD  522 (592)
Q Consensus       458 --------~~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~------~~~~-~~~~~~~~~~~~~~~~~  522 (592)
                              +...+.+|+......++.++|||||||++|||+||+.||.....      ...+ ..........       
T Consensus       207 ~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~-------  279 (396)
T 4dc2_A          207 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI-------  279 (396)
T ss_dssp             TCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCC-------
T ss_pred             CCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhcccc-------
Confidence                    11223344444444578899999999999999999999953221      1112 2222222211       


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCH
Q 007711          523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTM  554 (592)
Q Consensus       523 ~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~  554 (592)
                          .++...+..+.+++.+||+.||++||++
T Consensus       280 ----~~p~~~s~~~~~li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          280 ----RIPRSLSVKAASVLKSFLNKDPKERLGC  307 (396)
T ss_dssp             ----CCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred             ----CCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence                1222334578999999999999999995

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=5.3e-37  Score=308.55  Aligned_cols=248  Identities=16%  Similarity=0.217  Sum_probs=184.7

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. ++..||+|++......   ......+.+|++++++++||||+++++++...+  ..++||
T Consensus         6 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   80 (292)
T 3o0g_A            6 KLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD---EGVPSSALREICLLKELKHKNIVRLHDVLHSDK--KLTLVF   80 (292)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSS---TTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             eeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCc---CCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCC--EEEEEE
Confidence            4578999999999999974 5889999998754432   234577889999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh--
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~--  458 (592)
                      ||+++ ++.+.+.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus        81 e~~~~-~l~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lH~~~--ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  156 (292)
T 3o0g_A           81 EFCDQ-DLKKYFDS-CNGDLDPEIVKSFLFQLLKGLGFCHSRN--VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR  156 (292)
T ss_dssp             ECCSE-EHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECCSCCS
T ss_pred             ecCCC-CHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEeecccceecCCccc
Confidence            99975 56555543 3456899999999999999999999998  999999999999999999999999999765321  


Q ss_pred             -------hhhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC-----C---cccc-
Q 007711          459 -------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP-----L---QQFV-  521 (592)
Q Consensus       459 -------~~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~-----~---~~~~-  521 (592)
                             ...+.+|+... .+.++.++|||||||++|||+||+.||... .+..+...........     .   .... 
T Consensus       157 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  235 (292)
T 3o0g_A          157 CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPG-NDVDDQLKRIFRLLGTPTEEQWPSMTKLPD  235 (292)
T ss_dssp             CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCC-SSHHHHHHHHHHHHCCCCTTTCTTGGGSTT
T ss_pred             cccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCC-CCHHHHHHHHHHHhCCCChhhhhhhccccc
Confidence                   11233333322 233788999999999999999988886432 2333332222211000     0   0000 


Q ss_pred             ---------CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 ---------DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ---------~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                               ..............+.+++.+||+.||++|||++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          236 YKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence                     00011122234567899999999999999999999875

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.6e-38  Score=324.48  Aligned_cols=252  Identities=15%  Similarity=0.171  Sum_probs=189.2

Q ss_pred             hhhcccCcCCCeEEEEEEeCC---------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceee--------
Q 007711          301 DFSNVIGSSPIGTVYKGTLSN---------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN--------  363 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~---------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~--------  363 (592)
                      .+.+.||+|+||.||+|+...         +..||+|.+...          +.+.+|++++++++||||++        
T Consensus        45 ~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~----------~~~~~E~~~l~~l~h~niv~~~~~~~~~  114 (352)
T 2jii_A           45 KLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD----------GRLFNEQNFFQRAAKPLQVNKWKKLYST  114 (352)
T ss_dssp             EEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT----------STHHHHHHHHHHHCCHHHHHHHHHHTTC
T ss_pred             EEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc----------chHHHHHHHHHHhcccchhhhhhhhccC
Confidence            345889999999999999753         789999987532          24789999999999999988        


Q ss_pred             -------eeEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCe
Q 007711          364 -------LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV  436 (592)
Q Consensus       364 -------l~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~Ni  436 (592)
                             +++++...+. ..++||||+ +|+|.+++.......+++..+..|+.|++.||+|||+.+  |+||||||+||
T Consensus       115 ~~~~i~~~~~~~~~~~~-~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dikp~NI  190 (352)
T 2jii_A          115 PLLAIPTCMGFGVHQDK-YRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENE--YVHGNVTAENI  190 (352)
T ss_dssp             TTCSCCCCCEEEEETTT-EEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT--CBCSCCCGGGE
T ss_pred             CccCccchhhccccCCc-EEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCCHHHE
Confidence                   6777776322 679999999 999999997554467999999999999999999999998  99999999999


Q ss_pred             EEcCCC--ceEEecCCcchhhhhhhh----------------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccC
Q 007711          437 HLTEDY--AAKLSDLSFWNEIAMAEM----------------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLV  498 (592)
Q Consensus       437 Ll~~~~--~~ki~DfGla~~~~~~~~----------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~  498 (592)
                      |++.++  .+||+|||+++.......                .+.+++......++.++|||||||++|||+||+.||..
T Consensus       191 l~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~  270 (352)
T 2jii_A          191 FVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTN  270 (352)
T ss_dssp             EEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGG
T ss_pred             EEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence            999998  999999999976543221                12222333333478899999999999999999999965


Q ss_pred             CCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          499 DNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      ..............-......+.+....  ....+..+.+++.+||+.||++||+++++++.|++++...
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~  338 (352)
T 2jii_A          271 CLPNTEDIMKQKQKFVDKPGPFVGPCGH--WIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDL  338 (352)
T ss_dssp             GTTCHHHHHHHHHHHHHSCCCEECTTSC--EECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHhccCChhhhhhhccc--cCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhc
Confidence            4333322221111000111111111110  1122357999999999999999999999999999997554

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=4e-37  Score=307.31  Aligned_cols=237  Identities=18%  Similarity=0.327  Sum_probs=185.2

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... ++..||+|++.......  ......+.+|++++++++||||+++++++....  ..++||
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   88 (279)
T 3fdn_A           13 IGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK--AGVEHQLRREVEIQSHLRHPNILRLYGYFHDAT--RVYLIL   88 (279)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH--HTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCCCcchhheEecCC--EEEEEE
Confidence            4578999999999999865 56789999886433211  123567899999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||++........
T Consensus        89 e~~~~~~l~~~l~~~--~~~~~~~~~~~~~qi~~~l~~LH~~~--i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~  164 (279)
T 3fdn_A           89 EYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR  164 (279)
T ss_dssp             CCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTT--CEECCCCGGGEEECTTSCEEECSCCEESCC-----
T ss_pred             ecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCC--EecccCChHhEEEcCCCCEEEEeccccccCCcccc
Confidence            999999999988643  45899999999999999999999998  99999999999999999999999999865533221


Q ss_pred             -------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          461 -------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       461 -------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                             .+.+|+......++.++||||||+++|||++|+.||.  .....+...........           ++...+
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~--~~~~~~~~~~~~~~~~~-----------~~~~~~  231 (279)
T 3fdn_A          165 TDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE--ANTYQETYKRISRVEFT-----------FPDFVT  231 (279)
T ss_dssp             ---CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTC--CSSHHHHHHHHHHTCCC-----------CCTTSC
T ss_pred             cccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCC--CCcHHHHHHHHHhCCCC-----------CCCcCC
Confidence                   1223333334456889999999999999999999994  33333333333222111           122233


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+.+++.+||+.||++||+++|+++
T Consensus       232 ~~~~~li~~~l~~~p~~Rps~~e~l~  257 (279)
T 3fdn_A          232 EGARDLISRLLKHNPSQRPMLREVLE  257 (279)
T ss_dssp             HHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHhccChhhCCCHHHHhh
Confidence            56889999999999999999999986

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=4e-37  Score=328.92  Aligned_cols=238  Identities=22%  Similarity=0.347  Sum_probs=187.8

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|+.. +|..||||++.......  ......+.+|+++++.++||||+++++++....  ..++|
T Consensus        19 ~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~--~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~--~~~lv   94 (476)
T 2y94_A           19 ILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRS--LDVVGKIRREIQNLKLFRHPHIIKLYQVISTPS--DIFMV   94 (476)
T ss_dssp             EEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHH--TTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccC--HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEE
Confidence            34678999999999999975 78999999986543211  123467899999999999999999999998877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++|+|.+++..  ...+++.....++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++......
T Consensus        95 ~E~~~gg~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH~~g--ivHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~  170 (476)
T 2y94_A           95 MEYVSGGELFDYICK--NGRLDEKESRRLFQQILSGVDYCHRHM--VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE  170 (476)
T ss_dssp             EECCSSEEHHHHTTS--SSSCCHHHHHHHHHHHHHHHHHHHTTT--EECSCCSGGGEEECTTCCEEECCCSSCEECCTTC
T ss_pred             EeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--CCcccccHHHEEEecCCCeEEEeccchhhccccc
Confidence            999999999999863  356899999999999999999999998  9999999999999999999999999998754322


Q ss_pred             hh--hcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 MA--ATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 ~~--~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                      ..  ......+.+||       .+.++|||||||++|||+||+.||..  ............+...           .+.
T Consensus       171 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~  237 (476)
T 2y94_A          171 FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDD--DHVPTLFKKICDGIFY-----------TPQ  237 (476)
T ss_dssp             CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCC--SSSHHHHHHHHTTCCC-----------CCT
T ss_pred             cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCC--CCHHHHHHHHhcCCcC-----------CCc
Confidence            11  11112233333       36789999999999999999999953  3333444444333211           112


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .....+.+++.+||+.||++|||+.|+++
T Consensus       238 ~~s~~~~~Li~~~L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          238 YLNPSVISLLKHMLQVDPMKRATIKDIRE  266 (476)
T ss_dssp             TCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence            23356889999999999999999999986

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=2.2e-37  Score=309.45  Aligned_cols=244  Identities=19%  Similarity=0.317  Sum_probs=186.4

Q ss_pred             hhhcccCcCCCeEEEEEEeCC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          301 DFSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      .+.+.||+|+||.||+|++.+    +..||+|.+....    .....+.|.+|++++++++||||+++++++....   .
T Consensus        15 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~---~   87 (281)
T 3cc6_A           15 VLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC----TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEP---T   87 (281)
T ss_dssp             EEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS----CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSS---C
T ss_pred             EEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc----CchHHHHHHHHHHHHHhCCCCCcceEEEEEcCCC---C
Confidence            345889999999999998643    2358888775432    2345678999999999999999999999986543   5


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++||||+++|+|.+++... ...+++..+..++.+++.||+|||+++  ++||||||+||+++.++.+||+|||+++...
T Consensus        88 ~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  164 (281)
T 3cc6_A           88 WIIMELYPYGELGHYLERN-KNSLKVLTLVLYSLQICKAMAYLESIN--CVHRDIAVRNILVASPECVKLGDFGLSRYIE  164 (281)
T ss_dssp             EEEEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEEEETTEEEECCCCGGGCC-
T ss_pred             EEEEecCCCCCHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCccceEEECCCCcEEeCccCCCcccc
Confidence            8999999999999998643 356899999999999999999999999  9999999999999999999999999988654


Q ss_pred             hhhh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          457 MAEM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       457 ~~~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ....          .+.+|+......++.++||||||+++|||+| |+.||.....  .+......... ..        
T Consensus       165 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~--~~~~~~~~~~~-~~--------  233 (281)
T 3cc6_A          165 DEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN--KDVIGVLEKGD-RL--------  233 (281)
T ss_dssp             --------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG--GGHHHHHHHTC-CC--------
T ss_pred             cccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh--HHHHHHHhcCC-CC--------
Confidence            3221          1222222222346889999999999999999 9999953222  12222222111 10        


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                       ..+..++..+.+++.+||+.||++||++.|+++.|+++..
T Consensus       234 -~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~  273 (281)
T 3cc6_A          234 -PKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ  273 (281)
T ss_dssp             -CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -CCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence             1122234578999999999999999999999999998864

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=3.1e-37  Score=315.53  Aligned_cols=249  Identities=24%  Similarity=0.403  Sum_probs=190.3

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEE--EEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcce
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEI--AVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~v--avk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~  376 (592)
                      .+.+.||+|+||.||+|+.. ++..+  ++|.+.....    ....+.+.+|++++.++ +||||+++++++...+  ..
T Consensus        28 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~----~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~--~~  101 (327)
T 1fvr_A           28 KFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS----KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG--YL  101 (327)
T ss_dssp             EEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC----------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT--EE
T ss_pred             cceeeeecCCCceEEEEEEccCCcccceeeeeeccccc----hHHHHHHHHHHHHHHhccCCCchhhhceeeeeCC--ce
Confidence            35688999999999999964 45544  7777653221    22345789999999999 8999999999998877  67


Q ss_pred             EEEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC
Q 007711          377 MMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY  442 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~  442 (592)
                      ++||||+++|+|.+++....              ...+++..+..++.+++.||+|||+.+  |+||||||+||+++.++
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIl~~~~~  179 (327)
T 1fvr_A          102 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ--FIHRDLAARNILVGENY  179 (327)
T ss_dssp             EEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECGGG
T ss_pred             EEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCccceEEEcCCC
Confidence            99999999999999986432              246899999999999999999999998  99999999999999999


Q ss_pred             ceEEecCCcchhhhhhh--hhhcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcC
Q 007711          443 AAKLSDLSFWNEIAMAE--MAATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG  513 (592)
Q Consensus       443 ~~ki~DfGla~~~~~~~--~~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~  513 (592)
                      .+||+|||+++......  .....+..+.+||      ++.++||||||+++|||+| |+.||..  ....+.......+
T Consensus       180 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~--~~~~~~~~~~~~~  257 (327)
T 1fvr_A          180 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG--MTCAELYEKLPQG  257 (327)
T ss_dssp             CEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHGGGT
T ss_pred             eEEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCC--CcHHHHHHHhhcC
Confidence            99999999987432111  0111112334443      5889999999999999999 9999943  3333333333222


Q ss_pred             CCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                      . .         ...+...+..+.+++.+||+.||++||++.|+++.|++++....
T Consensus       258 ~-~---------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~  303 (327)
T 1fvr_A          258 Y-R---------LEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  303 (327)
T ss_dssp             C-C---------CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred             C-C---------CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhc
Confidence            1 0         01122334679999999999999999999999999999986643

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1.6e-36  Score=309.52  Aligned_cols=246  Identities=18%  Similarity=0.258  Sum_probs=191.4

Q ss_pred             HhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCC-chhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW-PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      .+.+.+.||+|+||.||+|+.. +|..||+|.+........ .....++|.+|++++++++||||+++++++....  ..
T Consensus        13 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~   90 (321)
T 2a2a_A           13 FYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRT--DV   90 (321)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EE
T ss_pred             cEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCC--EE
Confidence            3456789999999999999965 688999999876543321 1123567999999999999999999999998876  67


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC----ceEEecCCcc
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY----AAKLSDLSFW  452 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~----~~ki~DfGla  452 (592)
                      ++||||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+||++++++    .+||+|||++
T Consensus        91 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH~~~--ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~  166 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQ--KESLSEEEATSFIKQILDGVNYLHTKK--IAHFDLKPENIMLLDKNIPIPHIKLIDFGLA  166 (321)
T ss_dssp             EEEECCCCSCBHHHHHHT--CSCEEHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEESCTTSSSCCEEECCCTTC
T ss_pred             EEEEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCChHHEEEecCCCCcCCEEEccCccc
Confidence            999999999999999863  356899999999999999999999998  99999999999999888    7999999998


Q ss_pred             hhhhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          453 NEIAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       453 ~~~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      +......        ..+.+|+......++.++||||||+++|||+||+.||..  ....+................   
T Consensus       167 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~---  241 (321)
T 2a2a_A          167 HEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG--DTKQETLANITSVSYDFDEEF---  241 (321)
T ss_dssp             EECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCC--SSHHHHHHHHHTTCCCCCHHH---
T ss_pred             eecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhcccccChhh---
Confidence            7654321        223334444444578899999999999999999999943  333343333332211111000   


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          ....+..+.+++.+||+.||++|||+.|+++
T Consensus       242 ----~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~  272 (321)
T 2a2a_A          242 ----FSHTSELAKDFIRKLLVKETRKRLTIQEALR  272 (321)
T ss_dssp             ----HTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred             ----hcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                0122356889999999999999999999975

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=1.5e-37  Score=319.65  Aligned_cols=236  Identities=19%  Similarity=0.243  Sum_probs=184.9

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.+.||+|+||.||+|+.. +|+.||+|++.......  ....+.+..|.+++..+ +||||+++++++...+  ..++|
T Consensus        21 ~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~--~~~lv   96 (345)
T 1xjd_A           21 LHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLM--DDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE--NLFFV   96 (345)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhh--hhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCC--EEEEE
Confidence            4588999999999999975 58899999986542111  11245677899999876 8999999999998877  68999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      |||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++..... 
T Consensus        97 ~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~  172 (345)
T 1xjd_A           97 MEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHSKG--IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGD  172 (345)
T ss_dssp             EECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT
T ss_pred             EeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCChhhEEECCCCCEEEeEChhhhhcccCC
Confidence            9999999999998643  46899999999999999999999998  999999999999999999999999998754211 


Q ss_pred             --------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          459 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       459 --------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                              ...+.+|+......++.++|||||||++|||+||+.||..  .+..+...........           ++.
T Consensus       173 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~  239 (345)
T 1xjd_A          173 AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHG--QDEEELFHSIRMDNPF-----------YPR  239 (345)
T ss_dssp             CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCC-----------CCT
T ss_pred             CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHHhCCCC-----------CCc
Confidence                    1223334433344578899999999999999999999943  3344444444333211           122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHH-HHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMR-DIA  558 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~-ev~  558 (592)
                      ..+..+.+++.+||+.||++||++. |+.
T Consensus       240 ~~s~~~~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          240 WLEKEAKDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             TSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             ccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence            2345789999999999999999987 553

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=8.5e-37  Score=313.33  Aligned_cols=259  Identities=22%  Similarity=0.312  Sum_probs=180.5

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHH--HhcCCCCceeeeeEEEec---CCCcce
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDT--LSKVNHKNFVNLIGFCEE---EEPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~--l~~l~H~niv~l~g~~~~---~~~~~~  376 (592)
                      +.+.||+|+||.||+|+. ++..||||++....        ...+..|.++  +..++|+||+++++++..   .+....
T Consensus        17 ~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~--------~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~   87 (336)
T 3g2f_A           17 LLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN--------RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY   87 (336)
T ss_dssp             EEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG--------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             eeeecccCCCeEEEEEEE-CCeEEEEEEeeccc--------hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence            458899999999999987 67899999885332        2344445444  455899999999986643   222245


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC---------CCCeEeeCcCCCCeEEcCCCceEEe
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL---------NPPIAHNYLNSSAVHLTEDYAAKLS  447 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~---------~~~ivH~dLk~~NiLl~~~~~~ki~  447 (592)
                      ++||||+++|+|.+++...   ..+|..+.+|+.+++.||+|||+.         +  |+||||||+|||++.++.+||+
T Consensus        88 ~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~--ivH~Dikp~Nill~~~~~~kL~  162 (336)
T 3g2f_A           88 LLVMEYYPNGSLXKYLSLH---TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPA--ISHRDLNSRNVLVKNDGTCVIS  162 (336)
T ss_dssp             EEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCC--EECSSCSGGGEEECTTSCEEEC
T ss_pred             EEEEecCCCCcHHHHHhhc---ccchhHHHHHHHHHHHHHHHHHhhhccccccccc--eeecccccceEEEcCCCcEEEe
Confidence            8999999999999999643   348999999999999999999998         6  9999999999999999999999


Q ss_pred             cCCcchhhhhhh-----------hhhcccccCCCCC-------------CCCCCcchhhHHHHHHHHhCCCcccCCCCC-
Q 007711          448 DLSFWNEIAMAE-----------MAATSKKLSSAPS-------------ASLESNVYNFGVLLFEMVTGRLPYLVDNGS-  502 (592)
Q Consensus       448 DfGla~~~~~~~-----------~~~~~~~~~~~~~-------------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~-  502 (592)
                      |||+++......           .....+..+.+||             ++.++|||||||++|||+||+.||...... 
T Consensus       163 DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~  242 (336)
T 3g2f_A          163 DFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVP  242 (336)
T ss_dssp             CCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCC
T ss_pred             eccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchh
Confidence            999997653110           0001122334443             345789999999999999998876422110 


Q ss_pred             --------------hHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC-
Q 007711          503 --------------LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI-  567 (592)
Q Consensus       503 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~-  567 (592)
                                    ..+.......... ....+... ......++..+.+++.+||+.||++|||+.|+++.|++++.. 
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~  320 (336)
T 3g2f_A          243 EYQMAFQTEVGNHPTFEDMQVLVSREK-QRPKFPEA-WKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIW  320 (336)
T ss_dssp             CCCCTTHHHHCSSCCHHHHHHHHTTSC-CCCCCCTT-CCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCC
T ss_pred             HHHHhhhcccCCCchHHHHHhhhcccc-cCCCCCcc-cccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHH
Confidence                          0011111111111 11111111 112334667899999999999999999999999999999855 


Q ss_pred             CCCCCCCcc
Q 007711          568 TPDGAIPKL  576 (592)
Q Consensus       568 ~~~~~~p~~  576 (592)
                      ......+..
T Consensus       321 ~~~~~~~~~  329 (336)
T 3g2f_A          321 ERNKSVSPT  329 (336)
T ss_dssp             CC-------
T ss_pred             HhcccCCCc
Confidence            333333333

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=317.20  Aligned_cols=249  Identities=19%  Similarity=0.305  Sum_probs=189.5

Q ss_pred             hhhcccCcCCCeEEEEEEe-----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          301 DFSNVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      .+.+.||+|+||.||++++     .++..||||.+....     ....+.|.+|++++++++||||+++++++...+...
T Consensus        44 ~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  118 (326)
T 2w1i_A           44 KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST-----EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN  118 (326)
T ss_dssp             EEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC-----SHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----C
T ss_pred             eeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC-----HHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCc
Confidence            3568899999999999985     368899999875432     234578999999999999999999999987654335


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++..
T Consensus       119 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dikp~NIli~~~~~~kL~Dfg~~~~~  195 (326)
T 2w1i_A          119 LKLIMEYLPYGSLRDYLQKH-KERIDHIKLLQYTSQICKGMEYLGTKR--YIHRDLATRNILVENENRVKIGDFGLTKVL  195 (326)
T ss_dssp             CEEEECCCTTCBHHHHHHHS-TTSSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred             eEEEEECCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhCC--EeccCCCcceEEEcCCCcEEEecCcchhhc
Confidence            68999999999999999643 346899999999999999999999998  999999999999999999999999999865


Q ss_pred             hhhhhh------hcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChH---------H----HHHHH
Q 007711          456 AMAEMA------ATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE---------D----WAADY  510 (592)
Q Consensus       456 ~~~~~~------~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~---------~----~~~~~  510 (592)
                      ......      ...+..+.+||      ++.++||||||+++|||+||+.|+........         .    .....
T Consensus       196 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (326)
T 2w1i_A          196 PQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIEL  275 (326)
T ss_dssp             CSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHH
T ss_pred             cccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHH
Confidence            432110      01112344544      57889999999999999999999842100000         0    00111


Q ss_pred             hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          511 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      +....         ....+..++.++.+++.+||+.||++||++.|+++.|+++..
T Consensus       276 ~~~~~---------~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~  322 (326)
T 2w1i_A          276 LKNNG---------RLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD  322 (326)
T ss_dssp             HHTTC---------CCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             hhcCC---------CCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            11100         111233445679999999999999999999999999998853

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=5.3e-37  Score=306.18  Aligned_cols=238  Identities=17%  Similarity=0.312  Sum_probs=177.5

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+. .+|..||+|.+.......  ....+.+.+|++++++++||||+++++++...+  ..++||
T Consensus        15 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   90 (278)
T 3cok_A           15 VGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYK--AGMVQRVQNEVKIHCQLKHPSILELYNYFEDSN--YVYLVL   90 (278)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             eeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhh--hhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCC--eEEEEE
Confidence            457899999999999996 578999999986432111  122467899999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++...... 
T Consensus        91 e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~  167 (278)
T 3cok_A           91 EMCHNGEMNRYLKN-RVKPFSENEARHFMHQIITGMLYLHSHG--ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHE  167 (278)
T ss_dssp             ECCTTEEHHHHHHT-CSSCCCHHHHHHHHHHHHHHHHHHHHTT--EECSSCCGGGEEECTTCCEEECCCTTCEECC----
T ss_pred             ecCCCCcHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEcCCCCEEEEeecceeeccCCCC
Confidence            99999999999864 3356899999999999999999999998  9999999999999999999999999987653221 


Q ss_pred             --------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 --------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 --------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                              ..+.+|+......++.++||||||+++|||+||+.||......  +.......        .+.   ..+..
T Consensus       168 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~--------~~~---~~~~~  234 (278)
T 3cok_A          168 KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVK--NTLNKVVL--------ADY---EMPSF  234 (278)
T ss_dssp             ------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-------CCS--------SCC---CCCTT
T ss_pred             cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHH--HHHHHHhh--------ccc---CCccc
Confidence                    1223333333334688999999999999999999999543211  11111000        000   11223


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+..+.+++.+||+.||++||+++++++
T Consensus       235 ~~~~~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          235 LSIEAKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             SCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             cCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence            3457899999999999999999999875

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=1.1e-36  Score=313.56  Aligned_cols=234  Identities=19%  Similarity=0.221  Sum_probs=182.5

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.+.||+|+||.||+++.. +++.||+|++.......  ....+.+.+|+.++.++ +||||+++++++....  ..++|
T Consensus        13 ~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~--~~~lv   88 (345)
T 3a8x_A           13 LLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVND--DEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES--RLFFV   88 (345)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCS--HHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcc--hHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCC--EEEEE
Confidence            4588999999999999975 58899999987544322  33456788999999988 8999999999998876  77999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      |||+++|+|.+++...  ..+++..+..++.+++.||+|||+++  |+||||||+|||++.++.+||+|||+++..... 
T Consensus        89 ~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~  164 (345)
T 3a8x_A           89 IEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG  164 (345)
T ss_dssp             ECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTT
T ss_pred             EeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCHHHEEECCCCCEEEEeccccccccCCC
Confidence            9999999999988643  46899999999999999999999998  999999999999999999999999998753211 


Q ss_pred             --------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC-------ChHHHHHHHhcCCCCCccccCC
Q 007711          459 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-------SLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       459 --------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                              ...+.+|+......++.++|||||||++|||+||+.||.....       ..............        
T Consensus       165 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~--------  236 (345)
T 3a8x_A          165 DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI--------  236 (345)
T ss_dssp             CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCC--------
T ss_pred             CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCC--------
Confidence                    1223334443444578899999999999999999999953221       11112222222211        


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCH
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTM  554 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~  554 (592)
                         .++...+..+.+++.+||+.||++||++
T Consensus       237 ---~~p~~~s~~~~~li~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          237 ---RIPRSLSVKAASVLKSFLNKDPKERLGC  264 (345)
T ss_dssp             ---CCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred             ---CCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence               1122334578999999999999999995

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.1e-37  Score=316.33  Aligned_cols=248  Identities=18%  Similarity=0.285  Sum_probs=183.7

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecC------C
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEE------E  372 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~------~  372 (592)
                      .+.+.||+|+||.||+|+.. ++..||||.+....     ....+.+.+|+.++.++. ||||+++++++...      .
T Consensus        31 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~  105 (337)
T 3ll6_A           31 RVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNE-----EEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG  105 (337)
T ss_dssp             EEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESS-----HHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred             EEEEEEccCCceEEEEEEECCCCcEEEEEEecCCc-----hHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence            35688999999999999964 68899999885432     234567899999999996 99999999999532      1


Q ss_pred             CcceEEEEeeCCCCCchhhccc-cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCc
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHI-KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF  451 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGl  451 (592)
                      ....++|+||+. |+|.+++.. .....+++..+..|+.+++.||+|||+.+++|+||||||+|||++.++.+||+|||+
T Consensus       106 ~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~  184 (337)
T 3ll6_A          106 QAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGS  184 (337)
T ss_dssp             SEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCTT
T ss_pred             CceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCcc
Confidence            124689999995 799888864 234569999999999999999999999887899999999999999999999999999


Q ss_pred             chhhhhh---------------------hhhhcccccC---CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHH
Q 007711          452 WNEIAMA---------------------EMAATSKKLS---SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA  507 (592)
Q Consensus       452 a~~~~~~---------------------~~~~~~~~~~---~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~  507 (592)
                      ++.....                     ...+.+|+..   ....++.++|||||||++|||+||+.||....  .....
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~--~~~~~  262 (337)
T 3ll6_A          185 ATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGA--KLRIV  262 (337)
T ss_dssp             CBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-----------
T ss_pred             ceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchh--HHHhh
Confidence            8765321                     1122333332   23335778999999999999999999994321  11111


Q ss_pred             HHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                          ......     +    ........+.+++.+||+.||++||++.|+++.|+.+.....
T Consensus       263 ----~~~~~~-----~----~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~  311 (337)
T 3ll6_A          263 ----NGKYSI-----P----PHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARN  311 (337)
T ss_dssp             -------CCC-----C----TTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred             ----cCcccC-----C----cccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence                110000     0    011122357899999999999999999999999999976543

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=6.4e-37  Score=317.40  Aligned_cols=239  Identities=20%  Similarity=0.230  Sum_probs=179.0

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.+.||+|+||.||+++.. ++..||||++......      .+.+.+|+.++++++||||+++++++....  ..++
T Consensus        22 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~------~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~l   93 (361)
T 3uc3_A           22 YDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAI------DENVQREIINHRSLRHPNIVRFKEVILTPT--HLAI   93 (361)
T ss_dssp             EEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTS------CHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEE
T ss_pred             EEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccc------cHHHHHHHHHHHhCCCCCCCcEEEEEeeCC--EEEE
Confidence            345688999999999999975 7889999998643322      256889999999999999999999998877  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc--eEEecCCcchhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA--AKLSDLSFWNEIA  456 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~--~ki~DfGla~~~~  456 (592)
                      ||||+++|+|.+++...  ..+++..+..++.+++.||+|||+++  |+||||||+|||++.++.  +||+|||+++...
T Consensus        94 v~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~ql~~~L~~LH~~~--ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~  169 (361)
T 3uc3_A           94 IMEYASGGELYERICNA--GRFSEDEARFFFQQLLSGVSYCHSMQ--ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSV  169 (361)
T ss_dssp             EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CCSCCCCGGGEEECSSSSCCEEECCCCCC----
T ss_pred             EEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEcCCCCceEEEeecCcccccc
Confidence            99999999999988643  46899999999999999999999999  999999999999997775  9999999987543


Q ss_pred             hhhh--hhcccccCCCCC------CC-CCCcchhhHHHHHHHHhCCCcccCCC--CChHHHHHHHhcCCCCCccccCCCC
Q 007711          457 MAEM--AATSKKLSSAPS------AS-LESNVYNFGVLLFEMVTGRLPYLVDN--GSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       457 ~~~~--~~~~~~~~~~~~------~s-~ksDVwSfGvvl~El~tG~~P~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ....  ....+..+++||      +. .++|||||||++|||+||+.||....  ...................      
T Consensus       170 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~------  243 (361)
T 3uc3_A          170 LHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPD------  243 (361)
T ss_dssp             -----------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCT------
T ss_pred             ccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCC------
Confidence            2111  111222334443      33 34899999999999999999996432  2233333333322111110      


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                         ....+..+.+++.+||+.||++|||+.|+++
T Consensus       244 ---~~~~s~~~~~li~~~L~~dP~~Rps~~ell~  274 (361)
T 3uc3_A          244 ---DIRISPECCHLISRIFVADPATRISIPEIKT  274 (361)
T ss_dssp             ---TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             ---cCCCCHHHHHHHHHHccCChhHCcCHHHHHh
Confidence               1112356889999999999999999999986

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=1.7e-36  Score=302.37  Aligned_cols=249  Identities=18%  Similarity=0.251  Sum_probs=190.3

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.+.||+|+||.||+|... ++..+|+|++.......     .+.|.+|++++++++||||+++++++....  ..++
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~-----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~l   83 (277)
T 3f3z_A           11 YTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVED-----VDRFKQEIEIMKSLDHPNIIRLYETFEDNT--DIYL   83 (277)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSC-----HHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEE
T ss_pred             EEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccch-----HHHHHHHHHHHHhCCCCCEeeEEEEEecCC--eEEE
Confidence            445688999999999999965 46789999886543322     467899999999999999999999998876  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE---cCCCceEEecCCcchhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL---TEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl---~~~~~~ki~DfGla~~~  455 (592)
                      ||||+++++|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+||++   +.++.+||+|||+++..
T Consensus        84 v~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~  159 (277)
T 3f3z_A           84 VMELCTGGELFERVVHK--RVFRESDAARIMKDVLSAVAYCHKLN--VAHRDLKPENFLFLTDSPDSPLKLIDFGLAARF  159 (277)
T ss_dssp             EEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred             EEeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ccCCCCCHHHEEEecCCCCCcEEEEecccceec
Confidence            99999999999988643  45899999999999999999999999  9999999999999   78899999999998765


Q ss_pred             hhhhhh--hcccccCCCCC-----CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          456 AMAEMA--ATSKKLSSAPS-----ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       456 ~~~~~~--~~~~~~~~~~~-----~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      ......  ......+.+||     ++.++||||||+++|||+||+.||..  ....+.......+........       
T Consensus       160 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~~~~-------  230 (277)
T 3f3z_A          160 KPGKMMRTKVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSA--PTDSEVMLKIREGTFTFPEKD-------  230 (277)
T ss_dssp             CTTSCBCCCCSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCCHHH-------
T ss_pred             cCccchhccCCCCCccChHHhcccCCchhhehhHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCCCCchh-------
Confidence            422211  11112233333     68899999999999999999999943  333344433333321111000       


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHhhhCCC
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREITGIT  568 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~--~L~~i~~~~  568 (592)
                      ....+..+.+++.+||+.||++||++.|+++  .+++.....
T Consensus       231 ~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~~~~~~  272 (277)
T 3f3z_A          231 WLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEKQLSSS  272 (277)
T ss_dssp             HTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHHHHCCS
T ss_pred             hhcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhcccccc
Confidence            0022357899999999999999999999985  444444433

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=3.3e-37  Score=329.03  Aligned_cols=237  Identities=18%  Similarity=0.221  Sum_probs=179.5

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+. .+|..||||++.......  ......+.+|+++++.++||||+++++++...+  ..++||
T Consensus       152 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~--~~~lv~  227 (446)
T 4ejn_A          152 YLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVA--KDEVAHTLTENRVLQNSRHPFLTALKYSFQTHD--RLCFVM  227 (446)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC---------------CCCCCSCTTSCCEEEEEEETT--EEEEEE
T ss_pred             EeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhh--hHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCC--EEEEEE
Confidence            458899999999999996 468899999987542211  123456788999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||++|+|.+++...  ..+++..+..++.+++.||+|||+ .+  |+||||||+|||++.++.+||+|||+++......
T Consensus       228 e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~g--iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~  303 (446)
T 4ejn_A          228 EYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG  303 (446)
T ss_dssp             CCCSSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHHTC--CCCCCCCGGGEEECSSSCEEECCCCCCCTTCC--
T ss_pred             eeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHhhcCC--EEECCCCHHHEEECCCCCEEEccCCCceeccCCC
Confidence            999999999988643  468999999999999999999998 88  9999999999999999999999999998642211


Q ss_pred             ---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 ---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 ---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                               ..+.+|+......++.++|||||||++|||+||+.||..  ....+...........           ++.
T Consensus       304 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~  370 (446)
T 4ejn_A          304 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEEIR-----------FPR  370 (446)
T ss_dssp             ---CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCC-----------CCT
T ss_pred             cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCC--CCHHHHHHHHHhCCCC-----------CCc
Confidence                     122333333334578999999999999999999999943  3344444444333211           122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      ..+..+.+++.+||+.||++||     +++|+++
T Consensus       371 ~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          371 TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             cCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence            2335789999999999999999     9999875

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=313.87  Aligned_cols=241  Identities=18%  Similarity=0.192  Sum_probs=180.5

Q ss_pred             HHHHHhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCC
Q 007711          295 LEAACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE  372 (592)
Q Consensus       295 l~~~~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~  372 (592)
                      +......+.+.||+|+||+||+|+.. +|..||||++......   .....++..|+..+.++ +|+||++++++|...+
T Consensus        54 ~~~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~  130 (311)
T 3p1a_A           54 FFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRG---PKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGG  130 (311)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCS---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred             hhhhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccC---hHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCC
Confidence            33445556689999999999999975 7899999987543221   23344556666666555 8999999999998877


Q ss_pred             CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcc
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  452 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla  452 (592)
                        ..++||||+ +|+|.+++... ...++|..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||++
T Consensus       131 --~~~lv~e~~-~~~L~~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIll~~~~~~kl~DFG~a  204 (311)
T 3p1a_A          131 --ILYLQTELC-GPSLQQHCEAW-GASLPEAQVWGYLRDTLLALAHLHSQG--LVHLDVKPANIFLGPRGRCKLGDFGLL  204 (311)
T ss_dssp             --EEEEEEECC-CCBHHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECGGGCEEECCCTTC
T ss_pred             --EEEEEEecc-CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHEEECCCCCEEEccceee
Confidence              679999999 67998888643 356999999999999999999999998  999999999999999999999999998


Q ss_pred             hhhhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          453 NEIAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       453 ~~~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      +......        ..+.+||.... .++.++|||||||++|||++|..|+...    ..+ .....+ . ...     
T Consensus       205 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~----~~~-~~~~~~-~-~~~-----  271 (311)
T 3p1a_A          205 VELGTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG----EGW-QQLRQG-Y-LPP-----  271 (311)
T ss_dssp             EECC------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH----HHH-HHHTTT-C-CCH-----
T ss_pred             eecccCCCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc----cHH-HHHhcc-C-CCc-----
Confidence            7654322        12333443332 4788999999999999999997765321    111 111111 0 000     


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        .++...+..+.+++.+||+.||++|||++|+++
T Consensus       272 --~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          272 --EFTAGLSSELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             --HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             --ccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence              011123457899999999999999999999875

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=3.5e-37  Score=313.23  Aligned_cols=250  Identities=19%  Similarity=0.318  Sum_probs=191.4

Q ss_pred             hhhhcccCcCCCeEEEEEEe------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCC
Q 007711          300 EDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE  372 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~  372 (592)
                      +.+.+.||+|+||.||+|++      .++..||||.+....    .....+.+.+|++++.++ +||||+++++++...+
T Consensus        29 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  104 (316)
T 2xir_A           29 LKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA----THSEHRALMSELKILIHIGHHLNVVNLLGACTKPG  104 (316)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred             eeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC----CcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCC
Confidence            34568999999999999984      346789999885432    233456799999999999 7999999999997654


Q ss_pred             CcceEEEEeeCCCCCchhhccccCC--------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKES--------------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL  438 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~~--------------~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl  438 (592)
                      . ..++||||+++|+|.+++.....              ..+++..+..++.+++.||+|||+.+  |+||||||+||++
T Consensus       105 ~-~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--i~H~dikp~Nil~  181 (316)
T 2xir_A          105 G-PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLAARNILL  181 (316)
T ss_dssp             S-CCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEE
T ss_pred             C-ceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCC--cccccCccceEEE
Confidence            2 36899999999999999975432              22789999999999999999999998  9999999999999


Q ss_pred             cCCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHH
Q 007711          439 TEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW  506 (592)
Q Consensus       439 ~~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~  506 (592)
                      +.++.+||+|||+++.......           .+.+|+......++.++||||||+++|||+| |+.||...... ...
T Consensus       182 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~-~~~  260 (316)
T 2xir_A          182 SEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEF  260 (316)
T ss_dssp             CGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCS-HHH
T ss_pred             CCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchh-HHH
Confidence            9999999999999986532211           1222222222347889999999999999999 99999543322 222


Q ss_pred             HHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          507 AADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ......+. ..         ..+...+..+.+++.+||+.||.+||++.|+++.|++++..
T Consensus       261 ~~~~~~~~-~~---------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  311 (316)
T 2xir_A          261 CRRLKEGT-RM---------RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  311 (316)
T ss_dssp             HHHHHHTC-CC---------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHhccCc-cC---------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence            22222211 10         11222335789999999999999999999999999998753

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=7.8e-37  Score=312.24  Aligned_cols=235  Identities=20%  Similarity=0.318  Sum_probs=176.9

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||+|... ++..||||++...        ....+.+|+.++..++ ||||+++++++....  ..++|||
T Consensus        17 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--------~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~--~~~lv~e   86 (325)
T 3kn6_A           17 KPLGEGSFSICRKCVHKKSNQAFAVKIISKR--------MEANTQKEITALKLCEGHPNIVKLHEVFHDQL--HTFLVME   86 (325)
T ss_dssp             CCSEEETTEEEEEEEETTTCCEEEEEEEEGG--------GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEEEEC
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEChh--------hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCC--EEEEEEE
Confidence            67999999999999974 6889999988532        2456789999999997 999999999998877  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC---ceEEecCCcchhhhhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAKLSDLSFWNEIAMA  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~---~~ki~DfGla~~~~~~  458 (592)
                      |+++|+|.+++..  ...+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++   .+||+|||+++.....
T Consensus        87 ~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~--ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~  162 (325)
T 3kn6_A           87 LLNGGELFERIKK--KKHFSETEASYIMRKLVSAVSHMHDVG--VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD  162 (325)
T ss_dssp             CCCSCBHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEEC----CEEEECCCTTCEECCC-
T ss_pred             ccCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--CeecCCCHHHEEEecCCCcccEEEeccccceecCCC
Confidence            9999999999874  356899999999999999999999998  99999999999998665   8999999999754321


Q ss_pred             ---------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC-----ChHHHHHHHhcCCCCCccccCCC
Q 007711          459 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-----SLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       459 ---------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                               ...+.+|+......++.++|||||||++|||+||+.||.....     ...+.......+......     
T Consensus       163 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----  237 (325)
T 3kn6_A          163 NQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEG-----  237 (325)
T ss_dssp             ---------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCS-----
T ss_pred             CCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCc-----
Confidence                     1223344444444578899999999999999999999964322     223333333322111100     


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        ......+.++.+++.+||+.||++|||++|+++
T Consensus       238 --~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          238 --EAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY  270 (325)
T ss_dssp             --HHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred             --ccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence              001223467899999999999999999998874

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=5e-37  Score=313.99  Aligned_cols=248  Identities=21%  Similarity=0.290  Sum_probs=189.3

Q ss_pred             hhhhcccCcCCCeEEEEEEe------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC
Q 007711          300 EDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP  373 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  373 (592)
                      +.+.+.||+|+||.||+|++      .++..||||.+....    ......+|.+|+.++++++||||+++++++.... 
T Consensus        32 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-  106 (327)
T 2yfx_A           32 ITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC----SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL-  106 (327)
T ss_dssp             CEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSC----CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-
T ss_pred             eEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecccc----chhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC-
Confidence            34568899999999999984      246789999885322    2345668999999999999999999999998876 


Q ss_pred             cceEEEEeeCCCCCchhhccccCC-----CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC---CCceE
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKES-----EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAK  445 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~~-----~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~---~~~~k  445 (592)
                       ..++||||+++|+|.+++.....     ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.   +..+|
T Consensus       107 -~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~--i~H~dlkp~NIli~~~~~~~~~k  183 (327)
T 2yfx_A          107 -PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH--FIHRDIAARNCLLTCPGPGRVAK  183 (327)
T ss_dssp             -SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEESCSSTTCCEE
T ss_pred             -CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC--eecCcCCHhHEEEecCCCcceEE
Confidence             56999999999999999975422     45899999999999999999999998  999999999999994   45699


Q ss_pred             EecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcC
Q 007711          446 LSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG  513 (592)
Q Consensus       446 i~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~  513 (592)
                      |+|||+++.......           .+.+|+......++.++||||||+++|||+| |+.||..  ....+.......+
T Consensus       184 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~--~~~~~~~~~~~~~  261 (327)
T 2yfx_A          184 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPS--KSNQEVLEFVTSG  261 (327)
T ss_dssp             ECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT--CCHHHHHHHHHTT
T ss_pred             ECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCC--cCHHHHHHHHhcC
Confidence            999999886532221           1222222222346889999999999999999 9999943  3333333333322


Q ss_pred             CCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ..          ...+..++..+.+++.+||+.||.+||++.++++.|+.+...
T Consensus       262 ~~----------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~  305 (327)
T 2yfx_A          262 GR----------MDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  305 (327)
T ss_dssp             CC----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CC----------CCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence            11          011223345789999999999999999999999999998765

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=1.9e-36  Score=302.84  Aligned_cols=251  Identities=17%  Similarity=0.269  Sum_probs=192.6

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCC-chhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW-PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.+.||+|+||.||+|+.. ++..+|+|.+........ .....+.|.+|++++++++||||+++++++....  ..+
T Consensus         7 y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~   84 (283)
T 3bhy_A            7 YEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKT--DVV   84 (283)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEE
T ss_pred             hhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCC--eEE
Confidence            455689999999999999975 689999999876543221 1123567999999999999999999999998876  679


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC----ceEEecCCcch
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY----AAKLSDLSFWN  453 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~----~~ki~DfGla~  453 (592)
                      +||||+++++|.+++..  ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++    .+||+|||+++
T Consensus        85 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~  160 (283)
T 3bhy_A           85 LILELVSGGELFDFLAE--KESLTEDEATQFLKQILDGVHYLHSKR--IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAH  160 (283)
T ss_dssp             EEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             EEEeecCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCChHHEEEecCCCCCCceEEEecccce
Confidence            99999999999999864  346899999999999999999999998  99999999999999877    89999999987


Q ss_pred             hhhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          454 EIAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       454 ~~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ......        ..+.+|+......++.++||||||+++|||+||+.||..  ....+...............     
T Consensus       161 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~~~-----  233 (283)
T 3bhy_A          161 KIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG--ETKQETLTNISAVNYDFDEE-----  233 (283)
T ss_dssp             ECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTTCCCCCHH-----
T ss_pred             eccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCC--cchHHHHHHhHhcccCCcch-----
Confidence            653221        123334444444578899999999999999999999953  23333333322221111100     


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHhhh
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREIT  565 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~--~L~~i~  565 (592)
                        .....+..+.+++.+||+.||++||++.|+++  .++.+.
T Consensus       234 --~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  273 (283)
T 3bhy_A          234 --YFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIR  273 (283)
T ss_dssp             --HHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHH
T ss_pred             --hcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHH
Confidence              00122356889999999999999999999987  455554

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=2e-37  Score=319.48  Aligned_cols=259  Identities=15%  Similarity=0.109  Sum_probs=181.1

Q ss_pred             hhhcccCcCCCeEEEEEEeC----CCcEEEEEEeeecccCCCc------hhHHHHHHHHHHHHhcCCCCceeeeeEEEec
Q 007711          301 DFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWP------KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE  370 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~----~~~~vavk~~~~~~~~~~~------~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~  370 (592)
                      .+.+.||+|+||.||+|...    .+..+|+|...........      ......+.+|+..++.++||||+++++++..
T Consensus        40 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~  119 (345)
T 2v62_A           40 VLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLT  119 (345)
T ss_dssp             EEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEE
T ss_pred             EEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeeccccc
Confidence            35678999999999999975    5678899987643211000      0012346778899999999999999999987


Q ss_pred             C--CCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC--ceEE
Q 007711          371 E--EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY--AAKL  446 (592)
Q Consensus       371 ~--~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~--~~ki  446 (592)
                      .  +....++||||+ +|+|.+++....  .+++..+..|+.|++.||+|||+.+  |+||||||+|||++.++  .+||
T Consensus       120 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~~~kL  194 (345)
T 2v62_A          120 EFKGRSYRFMVMERL-GIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHENE--YVHGDIKAANLLLGYKNPDQVYL  194 (345)
T ss_dssp             ESSSCEEEEEEEECE-EEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEESSSTTSEEE
T ss_pred             ccCCCcEEEEEEecc-CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCcCHHHEEEccCCCCcEEE
Confidence            2  122679999999 999999987433  7899999999999999999999998  99999999999999887  9999


Q ss_pred             ecCCcchhhhhhh----------------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHH
Q 007711          447 SDLSFWNEIAMAE----------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY  510 (592)
Q Consensus       447 ~DfGla~~~~~~~----------------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~  510 (592)
                      +|||+++.+....                ..+.+|+......++.++|||||||++|||+||+.||..............
T Consensus       195 ~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~  274 (345)
T 2v62_A          195 ADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAK  274 (345)
T ss_dssp             CCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHH
T ss_pred             EeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHH
Confidence            9999997653221                111222222223478899999999999999999999954333322221111


Q ss_pred             hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          511 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      ................  ....+.++.+++.+||+.||++||++.+|++.|+++..
T Consensus       275 ~~~~~~~~~~~~~~~~--~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  328 (345)
T 2v62_A          275 TNLLDELPQSVLKWAP--SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI  328 (345)
T ss_dssp             HHHHHTTTHHHHHHSC--TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred             HhhcccccHHHHhhcc--ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence            1000001100000000  01234579999999999999999999999999998753

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=7.9e-37  Score=315.16  Aligned_cols=238  Identities=18%  Similarity=0.193  Sum_probs=186.2

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      .+.+.||+|+||.||+|+.. +++.||+|++.......  ....+.+..|..++..+ +||||+++++++...+  ..++
T Consensus        23 ~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~--~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~--~~~l   98 (353)
T 2i0e_A           23 NFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQ--DDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD--RLYF   98 (353)
T ss_dssp             EEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHH--TTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSS--EEEE
T ss_pred             EEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhc--chHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCC--EEEE
Confidence            34588999999999999975 47889999986543211  12345688899999988 8999999999998877  7899


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....
T Consensus        99 v~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~g--ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~  174 (353)
T 2i0e_A           99 VMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSKG--IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWD  174 (353)
T ss_dssp             EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred             EEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--EEeccCCHHHEEEcCCCcEEEEeCCcccccccC
Confidence            99999999999998643  45899999999999999999999998  999999999999999999999999999853211


Q ss_pred             ---------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          459 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       459 ---------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                               ...+.+|+......++.++|||||||++|||++|+.||.  ..+..+...........           ++
T Consensus       175 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~--~~~~~~~~~~i~~~~~~-----------~p  241 (353)
T 2i0e_A          175 GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFE--GEDEDELFQSIMEHNVA-----------YP  241 (353)
T ss_dssp             TCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCC-----------CC
T ss_pred             CcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCC--CCCHHHHHHHHHhCCCC-----------CC
Confidence                     122333443334457889999999999999999999994  33444554444443211           12


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPT-----MRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs-----~~ev~~  559 (592)
                      ...+.++.+++.+||+.||++||+     ++|+.+
T Consensus       242 ~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~  276 (353)
T 2i0e_A          242 KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE  276 (353)
T ss_dssp             TTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence            233457899999999999999996     455553

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=2.8e-36  Score=300.45  Aligned_cols=240  Identities=20%  Similarity=0.267  Sum_probs=186.7

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.+.||+|+||.||+|... ++..||+|.+......    ...+.+.+|+++++.++||||+++++++...+  ..++
T Consensus         9 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~l   82 (276)
T 2yex_A            9 WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV----DCPENIKKEICINKMLNHENVVKFYGHRREGN--IQYL   82 (276)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCT----THHHHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEE
T ss_pred             eEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccch----hhhHHHHHHHHHHHhcCCCCceeeeeEEEcCC--EEEE
Confidence            345688999999999999975 6889999988654322    24567899999999999999999999998876  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |+||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.....
T Consensus        83 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~  158 (276)
T 2yex_A           83 FLEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLHGIG--ITHRDIKPENLLLDERDNLKISDFGLATVFRYN  158 (276)
T ss_dssp             EEECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred             EEEecCCCcHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCChHHEEEccCCCEEEeeCCCccccCCC
Confidence            9999999999999863  356899999999999999999999998  999999999999999999999999998754321


Q ss_pred             -----------hhhhcccccCCCCC-CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          459 -----------EMAATSKKLSSAPS-ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       459 -----------~~~~~~~~~~~~~~-~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                                 ...+.+|+...... .+.++||||||+++|||+||+.||.........+.. ........         
T Consensus       159 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~-~~~~~~~~---------  228 (276)
T 2yex_A          159 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSD-WKEKKTYL---------  228 (276)
T ss_dssp             TEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHH-HHTTCTTS---------
T ss_pred             cchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHH-hhhccccc---------
Confidence                       11223333332222 366899999999999999999999654433222221 11111100         


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ......+..+.+++.+||+.||++|||+.|+++
T Consensus       229 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (276)
T 2yex_A          229 NPWKKIDSAPLALLHKILVENPSARITIPDIKK  261 (276)
T ss_dssp             TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence            011223457889999999999999999999875

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=7.7e-37  Score=305.06  Aligned_cols=246  Identities=20%  Similarity=0.242  Sum_probs=186.8

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... +++.||+|.+.....   .....+.|.+|++++++++||||+++++++........++||
T Consensus        10 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~   86 (279)
T 2w5a_A           10 VLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSM---TEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVM   86 (279)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEE
T ss_pred             eehhccCCCCcEEEEEEECCCCcEEEEEEEEcccC---CHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEE
Confidence            4578999999999999975 688999998865432   234467899999999999999999999988653323679999


Q ss_pred             eeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCC---CCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          381 EYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLN---PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~---~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      ||+++|+|.+++...  ....+++..+..++.+++.||+|||+.+   .+++||||||+||+++.++.+||+|||+++..
T Consensus        87 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~  166 (279)
T 2w5a_A           87 EYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARIL  166 (279)
T ss_dssp             ECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHHHC
T ss_pred             eCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchheee
Confidence            999999999998643  3455899999999999999999999866   34999999999999999999999999998765


Q ss_pred             hhhhh---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          456 AMAEM---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       456 ~~~~~---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      .....         .+.+|+......++.++||||||+++|||+||+.||...  ...+.......+..          .
T Consensus       167 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~i~~~~~----------~  234 (279)
T 2w5a_A          167 NHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF--SQKELAGKIREGKF----------R  234 (279)
T ss_dssp             ---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCC----------C
T ss_pred             ccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCccc--CHHHHHHHHhhccc----------c
Confidence            42211         122233222334688999999999999999999999532  33333333332211          1


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  562 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~  562 (592)
                      ..+...+..+.+++.+||+.||++||++.|+++.+.
T Consensus       235 ~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~  270 (279)
T 2w5a_A          235 RIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPL  270 (279)
T ss_dssp             CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred             cCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence            112233457999999999999999999999987543

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=5.2e-37  Score=306.94  Aligned_cols=243  Identities=19%  Similarity=0.274  Sum_probs=187.7

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecC-------
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE-------  371 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~-------  371 (592)
                      +.+.+.||+|+||.||+|... +++.||+|.+....         ..+.+|++++++++||||+++++++...       
T Consensus        13 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   83 (284)
T 2a19_B           13 FKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN---------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETS   83 (284)
T ss_dssp             EEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS---------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC----
T ss_pred             cceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc---------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccc
Confidence            445688999999999999975 78999999886432         2467899999999999999999988541       


Q ss_pred             -------CCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCce
Q 007711          372 -------EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAA  444 (592)
Q Consensus       372 -------~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~  444 (592)
                             .....++||||+++|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+||++++++.+
T Consensus        84 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~  161 (284)
T 2a19_B           84 SKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKK--LINRDLKPSNIFLVDTKQV  161 (284)
T ss_dssp             -----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEEETTEE
T ss_pred             cccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeccCCHHHEEEcCCCCE
Confidence                   1114689999999999999997655567999999999999999999999998  9999999999999999999


Q ss_pred             EEecCCcchhhhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC
Q 007711          445 KLSDLSFWNEIAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP  516 (592)
Q Consensus       445 ki~DfGla~~~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~  516 (592)
                      ||+|||+++......        ..+.+|+......++.++||||||+++|||+||+.|+..    ...........  .
T Consensus       162 kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~----~~~~~~~~~~~--~  235 (284)
T 2a19_B          162 KIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFE----TSKFFTDLRDG--I  235 (284)
T ss_dssp             EECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHH----HHHHHHHHHTT--C
T ss_pred             EECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchh----HHHHHHHhhcc--c
Confidence            999999987654321        112222222233468899999999999999999998732    11111111111  1


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCC
Q 007711          517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  570 (592)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~  570 (592)
                          .       +...+..+.+++.+||+.||++||++.|+++.|+.+......
T Consensus       236 ----~-------~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~  278 (284)
T 2a19_B          236 ----I-------SDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEK  278 (284)
T ss_dssp             ----C-------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC----
T ss_pred             ----c-------cccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCCc
Confidence                1       111234688999999999999999999999999998765443

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=5.3e-37  Score=318.76  Aligned_cols=237  Identities=19%  Similarity=0.229  Sum_probs=176.3

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHH-HhcCCCCceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDT-LSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~-l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      .+.+.||+|+||.||+|+.. ++..+|+|++.......  ......+..|..+ ++.++||||+++++++...+  ..++
T Consensus        41 ~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~--~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~--~~~l  116 (373)
T 2r5t_A           41 HFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILK--KKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTAD--KLYF  116 (373)
T ss_dssp             EEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC---------------CCBCCCCCTTBCCEEEEEECSS--EEEE
T ss_pred             EEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhh--hHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCC--EEEE
Confidence            34688999999999999975 57889999987554322  2234456677776 57789999999999998877  7899


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||||+++|+|.+++...  ..+++.....++.+++.||+|||+++  |+||||||+|||++.++.+||+|||+++.....
T Consensus       117 v~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~g--ivHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~  192 (373)
T 2r5t_A          117 VLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLN--IVYRDLKPENILLDSQGHIVLTDFGLCKENIEH  192 (373)
T ss_dssp             EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEECCCCBCGGGBCC
T ss_pred             EEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCHHHEEECCCCCEEEeeCccccccccC
Confidence            99999999999998643  46888999999999999999999999  999999999999999999999999999864211


Q ss_pred             h---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          459 E---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       459 ~---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      .         ..+.++|......++.++|||||||++|||+||+.||.  ..+..+...........           ++
T Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~--~~~~~~~~~~i~~~~~~-----------~~  259 (373)
T 2r5t_A          193 NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFY--SRNTAEMYDNILNKPLQ-----------LK  259 (373)
T ss_dssp             CCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTC--CSBHHHHHHHHHHSCCC-----------CC
T ss_pred             CCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCC--CCCHHHHHHHHHhcccC-----------CC
Confidence            1         11222333333347889999999999999999999994  33444444444433211           11


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIA  558 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~  558 (592)
                      ......+.+++.+||+.||.+||++.+.+
T Consensus       260 ~~~~~~~~~li~~lL~~dp~~R~~~~~~~  288 (373)
T 2r5t_A          260 PNITNSARHLLEGLLQKDRTKRLGAKDDF  288 (373)
T ss_dssp             SSSCHHHHHHHHHHTCSSGGGSTTTTTTH
T ss_pred             CCCCHHHHHHHHHHcccCHHhCCCCCCCH
Confidence            22335688999999999999999986433

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=1.5e-36  Score=318.79  Aligned_cols=237  Identities=17%  Similarity=0.272  Sum_probs=178.7

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHh-cCCCCceeeeeEEEec--CCCcceEEE
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLS-KVNHKNFVNLIGFCEE--EEPFTRMMV  379 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~-~l~H~niv~l~g~~~~--~~~~~~~lv  379 (592)
                      +.||+|+||.||++... ++..||||++...          ..+.+|++++. ..+||||+++++++..  .+....++|
T Consensus        68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~----------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv  137 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKRTQEKFALKMLQDC----------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIV  137 (400)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECS----------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             ceeeeccCeEEEEEEECCCCCEEEEEEeCcc----------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEE
Confidence            57999999999999964 6889999988521          34678888874 4589999999998864  111257899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC---CCceEEecCCcchhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEIA  456 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~---~~~~ki~DfGla~~~~  456 (592)
                      ||||++|+|.+++.......+++..+..|+.+++.||+|||+++  |+||||||+|||++.   ++.+||+|||+++...
T Consensus       138 ~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~  215 (400)
T 1nxk_A          138 MECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  215 (400)
T ss_dssp             EECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred             EEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCcCcceEEEecCCCCccEEEEecccccccC
Confidence            99999999999997655567999999999999999999999998  999999999999998   7899999999998653


Q ss_pred             hh--------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCCh--HHHHHHHhcCCCCCccccCCCCC
Q 007711          457 MA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL--EDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       457 ~~--------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      ..        ...+.+++......++.++|||||||++|||+||+.||.......  .........+.....   .+.  
T Consensus       216 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~---~~~--  290 (400)
T 1nxk_A          216 SHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFP---NPE--  290 (400)
T ss_dssp             -----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCC---TTT--
T ss_pred             CCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCC---Ccc--
Confidence            22        122344555545557889999999999999999999996433211  011111111111111   111  


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        ....+.++.+++.+||+.||++|||+.|+++
T Consensus       291 --~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~  321 (400)
T 1nxk_A          291 --WSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  321 (400)
T ss_dssp             --TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             --cccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence              1223457899999999999999999999987

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=1.7e-36  Score=304.55  Aligned_cols=243  Identities=24%  Similarity=0.343  Sum_probs=185.2

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC--CcceEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE--PFTRMM  378 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~--~~~~~l  378 (592)
                      +.+.||+|+||.||+|.. .++..||+|.+.....   .....+.|.+|++++++++||||+++++++....  ....++
T Consensus        30 ~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  106 (290)
T 1t4h_A           30 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL---TKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             eeeeccCCCCeEEEEeEecCCceEEEEEEecchhh---CHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence            446799999999999996 4578899998864432   2345678999999999999999999999986531  224789


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc-CCCceEEecCCcchhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~-~~~~~ki~DfGla~~~~~  457 (592)
                      ||||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+++++||||||+||+++ +++.+||+|||+++....
T Consensus       107 v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~  184 (290)
T 1t4h_A          107 VTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  184 (290)
T ss_dssp             EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             EEEecCCCCHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccc
Confidence            99999999999998643  468999999999999999999999877799999999999998 789999999999875432


Q ss_pred             hhhh-hcccccCCCC-----CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          458 AEMA-ATSKKLSSAP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       458 ~~~~-~~~~~~~~~~-----~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                      .... ......+.+|     .++.++||||||+++|||+||+.||... ................ .        ..+..
T Consensus       185 ~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~-~~~~~~~~~~~~~~~~-~--------~~~~~  254 (290)
T 1t4h_A          185 SFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSEC-QNAAQIYRRVTSGVKP-A--------SFDKV  254 (290)
T ss_dssp             TSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTC-SSHHHHHHHHTTTCCC-G--------GGGGC
T ss_pred             cccccccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCc-CcHHHHHHHHhccCCc-c--------ccCCC
Confidence            2111 1111223333     3788999999999999999999999532 2333333333322111 0        01112


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+..+.+++.+||+.||++|||+.|+++
T Consensus       255 ~~~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          255 AIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             CCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence            2346899999999999999999999875

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=2.7e-36  Score=308.63  Aligned_cols=240  Identities=17%  Similarity=0.208  Sum_probs=186.9

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||+|... ++..||+|++......   ......+.+|+.++.++ +||||+++++++....  ..++|||
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~--~~~lv~e  109 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRG---QDCRAEILHEIAVLELAKSCPRVINLHEVYENTS--EIILILE  109 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETT---EECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEEEEE
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcc---hHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCC--eEEEEEE
Confidence            78999999999999965 5899999988754322   22356789999999999 4699999999998877  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC---CCceEEecCCcchhhhhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~---~~~~ki~DfGla~~~~~~  458 (592)
                      |+++|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+|||++.   ++.+||+|||+++.....
T Consensus       110 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~g--ivH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~  187 (327)
T 3lm5_A          110 YAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNN--IVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA  187 (327)
T ss_dssp             CCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---
T ss_pred             ecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC--eecCcCChHHEEEecCCCCCcEEEeeCccccccCCc
Confidence            999999999987655677999999999999999999999998  999999999999998   789999999999865432


Q ss_pred             h--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          459 E--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       459 ~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                      .        ..+.+|+......++.++|||||||++|||+||+.||..  ....+.............   .    ....
T Consensus       188 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~--~~~~~~~~~i~~~~~~~~---~----~~~~  258 (327)
T 3lm5_A          188 CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVG--EDNQETYLNISQVNVDYS---E----ETFS  258 (327)
T ss_dssp             ------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCC---T----TTTT
T ss_pred             cccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCC--CCchHHHHHHHhcccccC---c----hhhc
Confidence            2        123334444444578899999999999999999999943  233333222222211111   1    1112


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+..+.+++.+||+.||++|||++|+++
T Consensus       259 ~~~~~~~~li~~~L~~dP~~Rpt~~~ll~  287 (327)
T 3lm5_A          259 SVSQLATDFIQSLLVKNPEKRPTAEICLS  287 (327)
T ss_dssp             TSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             ccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence            33457889999999999999999999875

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=1.8e-36  Score=308.19  Aligned_cols=238  Identities=20%  Similarity=0.294  Sum_probs=179.4

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.||+|+||.||+|.. .++..||||++.....     ...+.+.+|++++.++ +||||+++++++...+  ..++|||
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~--~~~lv~e   91 (316)
T 2ac3_A           19 DVLGEGAHARVQTCINLITSQEYAVKIIEKQPG-----HIRSRVFREVEMLYQCQGHRNVLELIEFFEEED--RFYLVFE   91 (316)
T ss_dssp             CCCCCCSSEEEEEEECSSSCCEEEEEEEECCSS-----CCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEEEE
T ss_pred             ceecCCceEEEEEEEEcCCCcEEEEEEEeeCcc-----hhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC--EEEEEEE
Confidence            5799999999999995 4789999999865432     2356789999999985 7999999999998877  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc---eEEecCCcchhhhhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA---AKLSDLSFWNEIAMA  458 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~---~ki~DfGla~~~~~~  458 (592)
                      |+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.   +||+|||+++.....
T Consensus        92 ~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~  167 (316)
T 2ac3_A           92 KMRGGSILSHIHKR--RHFNELEASVVVQDVASALDFLHNKG--IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLN  167 (316)
T ss_dssp             CCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEESCSSSSCSEEECCTTCCC-----
T ss_pred             cCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhCC--ceeCCCCHHHEEEccCCCcCceEEEEccCccccccC
Confidence            99999999998643  46899999999999999999999998  999999999999998776   999999998765321


Q ss_pred             hh----------hhcccccCCCCC-----------CCCCCcchhhHHHHHHHHhCCCcccCCCCCh-------------H
Q 007711          459 EM----------AATSKKLSSAPS-----------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-------------E  504 (592)
Q Consensus       459 ~~----------~~~~~~~~~~~~-----------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~-------------~  504 (592)
                      ..          .......+.+||           ++.++|||||||++|||+||+.||.......             .
T Consensus       168 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~  247 (316)
T 2ac3_A          168 GDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQN  247 (316)
T ss_dssp             --------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHH
T ss_pred             CccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHH
Confidence            10          001122344444           5789999999999999999999996433211             1


Q ss_pred             HHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          505 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .................       ....+..+.+++.+||+.||++|||+.|+++
T Consensus       248 ~~~~~i~~~~~~~~~~~-------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  295 (316)
T 2ac3_A          248 MLFESIQEGKYEFPDKD-------WAHISCAAKDLISKLLVRDAKQRLSAAQVLQ  295 (316)
T ss_dssp             HHHHHHHHCCCCCCHHH-------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHhccCcccCchh-------cccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence            12222222211110000       0112357899999999999999999999976

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=1.1e-36  Score=330.22  Aligned_cols=241  Identities=18%  Similarity=0.229  Sum_probs=188.7

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. +|..||+|++.......  ......+.+|+++|++++||||+++++++...+  ..++||
T Consensus       188 ~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~--~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~--~l~lVm  263 (576)
T 2acx_A          188 QYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK--RKGEAMALNEKQILEKVNSRFVVSLAYAYETKD--ALCLVL  263 (576)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhh--hHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCC--EEEEEE
Confidence            3478999999999999974 68999999986543211  123456889999999999999999999998877  789999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++|+|.+++.......+++..+..++.+|+.||+|||+.+  |+||||||+|||++.++.+||+|||+++...... 
T Consensus       264 Ey~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~g--IvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~  341 (576)
T 2acx_A          264 TLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRER--IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT  341 (576)
T ss_dssp             CCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTSCEEECCCTTCEECCTTCC
T ss_pred             EcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC--EeccCCchheEEEeCCCCeEEEecccceecccCcc
Confidence            9999999999987655556999999999999999999999998  9999999999999999999999999998654321 


Q ss_pred             -------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC--ChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 -------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 -------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                             ..+.+|+......++.++|||||||++|||+||+.||.....  ...+..........           .++.
T Consensus       342 ~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~-----------~~p~  410 (576)
T 2acx_A          342 IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPE-----------EYSE  410 (576)
T ss_dssp             EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCC-----------CCCT
T ss_pred             ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccc-----------cCCc
Confidence                   122333333333478899999999999999999999965332  22333322222211           1122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      ..+..+.+++.+||+.||.+||     +++|+++
T Consensus       411 ~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~  444 (576)
T 2acx_A          411 RFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE  444 (576)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred             cCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence            2345789999999999999999     6788764

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=3.5e-36  Score=301.12  Aligned_cols=240  Identities=20%  Similarity=0.257  Sum_probs=187.4

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... ++..||+|++......   ....+.+.+|++++++++||||+++++++....  ..++||
T Consensus        10 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   84 (284)
T 3kk8_A           10 VKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS---ARDFQKLEREARICRKLQHPNIVRLHDSIQEES--FHYLVF   84 (284)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             hhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCC---HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCC--EEEEEE
Confidence            4578999999999999964 5889999998654322   334567889999999999999999999998776  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc---eEEecCCcchhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA---AKLSDLSFWNEIAM  457 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~---~ki~DfGla~~~~~  457 (592)
                      ||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.   +||+|||++.....
T Consensus        85 e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~  160 (284)
T 3kk8_A           85 DLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSNG--IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND  160 (284)
T ss_dssp             CCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred             ecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--cCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence            999999998888643  46899999999999999999999999  999999999999986655   99999999876542


Q ss_pred             hh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          458 AE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       458 ~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      ..        ..+.+|+......++.++||||||+++|||++|+.||..  ....+.......+.....   .+.    .
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~--~~~~~~~~~~~~~~~~~~---~~~----~  231 (284)
T 3kk8_A          161 SEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWD--EDQHRLYAQIKAGAYDYP---SPE----W  231 (284)
T ss_dssp             SCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCC---TTT----T
T ss_pred             CccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCC--CchhHHHHHHHhccccCC---chh----h
Confidence            21        122334433444578899999999999999999999943  333333333333221111   111    1


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...+..+.+++.+||+.||++|||+.|+++
T Consensus       232 ~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (284)
T 3kk8_A          232 DTVTPEAKSLIDSMLTVNPKKRITADQALK  261 (284)
T ss_dssp             TTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            123356889999999999999999999986

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=1.2e-36  Score=306.29  Aligned_cols=237  Identities=16%  Similarity=0.251  Sum_probs=186.9

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... ++..+|+|.+.......  ....+.+.+|++++++++|+||+++++++...+  ..++||
T Consensus        19 ~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   94 (294)
T 2rku_A           19 RGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLK--PHQREKMSMEISIHRSLAHQHVVGFHGFFEDND--FVFVVL   94 (294)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCS--HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEeecCCEEEEEEEECCCCceEEEEEechhhccC--HHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCC--EEEEEE
Confidence            4578999999999999975 57889999886543222  345677899999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++++|.+++...  ..+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.......
T Consensus        95 e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~  170 (294)
T 2rku_A           95 ELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNR--VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE  170 (294)
T ss_dssp             ECCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             ecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCChHhEEEcCCCCEEEEeccCceecccCcc
Confidence            999999999987632  46899999999999999999999998  99999999999999999999999999876532111


Q ss_pred             ---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          461 ---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       461 ---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                               .+.+++......++.++||||||+++|||+||+.||..  ....+...........           .+..
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~-----------~~~~  237 (294)
T 2rku_A          171 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFET--SCLKETYLRIKKNEYS-----------IPKH  237 (294)
T ss_dssp             CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTTCCC-----------CCTT
T ss_pred             ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHhhccCC-----------Cccc
Confidence                     12223322333468899999999999999999999943  3333333333222111           1222


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+.+++.+||+.||++||+++|+++
T Consensus       238 ~~~~~~~li~~~l~~~p~~Rps~~~ll~  265 (294)
T 2rku_A          238 INPVAASLIQKMLQTDPTARPTINELLN  265 (294)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             cCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence            3356889999999999999999999987

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=8.7e-37  Score=316.46  Aligned_cols=247  Identities=19%  Similarity=0.224  Sum_probs=185.3

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-----CCceeeeeEEEecCCC
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-----HKNFVNLIGFCEEEEP  373 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-----H~niv~l~g~~~~~~~  373 (592)
                      +.+.+.||+|+||.||+|+. .++..||||++...      ....+.+..|++++.+++     ||||+++++++...+ 
T Consensus        37 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~-  109 (360)
T 3llt_A           37 FLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI------KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYD-  109 (360)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC------HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETT-
T ss_pred             EEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc------hhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECC-
Confidence            34568899999999999996 46889999988532      234567888999999986     999999999998877 


Q ss_pred             cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC-------------
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-------------  440 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~-------------  440 (592)
                       ..++||||+ +++|.+++.......+++..+..++.+++.||+|||+++  |+||||||+|||+++             
T Consensus       110 -~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~~~~~~~~~~~~~  185 (360)
T 3llt_A          110 -HMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMS--LTHTDLKPENILLDDPYFEKSLITVRRV  185 (360)
T ss_dssp             -EEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEESCTTCCEEEEEEECT
T ss_pred             -eeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCcccEEEccccccccccchhcc
Confidence             679999999 999999997665567999999999999999999999999  999999999999986             


Q ss_pred             ------------CCceEEecCCcchhhhhh------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCC
Q 007711          441 ------------DYAAKLSDLSFWNEIAMA------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS  502 (592)
Q Consensus       441 ------------~~~~ki~DfGla~~~~~~------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~  502 (592)
                                  ++.+||+|||+++.....      ...+.+|+......++.++|||||||++|||+||+.||....  
T Consensus       186 ~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~--  263 (360)
T 3llt_A          186 TDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHE--  263 (360)
T ss_dssp             TTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSS--
T ss_pred             cccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCc--
Confidence                        789999999999865422      123344444444458899999999999999999999995322  


Q ss_pred             hHHHHHHHhcCCCCCc-------------cccC--------CCCCCC--------------CHHHHHHHHHHHHHhcccC
Q 007711          503 LEDWAADYLSGVQPLQ-------------QFVD--------PTLSSF--------------DEEQLETLGELIKSCVRAD  547 (592)
Q Consensus       503 ~~~~~~~~~~~~~~~~-------------~~~~--------~~~~~~--------------~~~~~~~l~~l~~~Cl~~d  547 (592)
                      ..+.............             ...+        +.....              .......+.+++.+||+.|
T Consensus       264 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  343 (360)
T 3llt_A          264 HMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQID  343 (360)
T ss_dssp             HHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSS
T ss_pred             HHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCC
Confidence            2222111111000000             0000        000000              0001156789999999999


Q ss_pred             CCCCCCHHHHHH
Q 007711          548 PEKRPTMRDIAA  559 (592)
Q Consensus       548 P~~RPs~~ev~~  559 (592)
                      |++|||+.|+++
T Consensus       344 P~~Rpta~elL~  355 (360)
T 3llt_A          344 PTLRPSPAELLK  355 (360)
T ss_dssp             GGGSCCHHHHTT
T ss_pred             hhhCCCHHHHhc
Confidence            999999999874

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=307.52  Aligned_cols=247  Identities=19%  Similarity=0.199  Sum_probs=184.7

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... +|..||+|++.....   .....+.+.+|++++++++||||+++++++...+  ..++||
T Consensus         7 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   81 (311)
T 4agu_A            7 KIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESED---DPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKR--RLHLVF   81 (311)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC----HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             EeeEEeecCCeEEEEEEeCCCCcEEEEEEeecccc---chHHHHHHHHHHHHHHhCCCCCccchhheeecCC--eEEEEE
Confidence            4578999999999999975 588999998754332   2345677889999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++++|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++...... 
T Consensus        82 e~~~~~~l~~~~~~--~~~~~~~~~~~i~~~l~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  157 (311)
T 4agu_A           82 EYCDHTVLHELDRY--QRGVPEHLVKSITWQTLQAVNFCHKHN--CIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD  157 (311)
T ss_dssp             ECCSEEHHHHHHHT--SSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECC----
T ss_pred             EeCCCchHHHHHhh--hcCCCHHHHHHHHHHHHHHHHHHHHCC--CcCCCCChhhEEEcCCCCEEEeeCCCchhccCccc
Confidence            99999999888753  356899999999999999999999998  9999999999999999999999999997654221 


Q ss_pred             --------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHh---cC-----------CCC
Q 007711          460 --------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL---SG-----------VQP  516 (592)
Q Consensus       460 --------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~---~~-----------~~~  516 (592)
                              ..+.+|+... ...++.++||||||+++|||+||+.||....  ..+......   ..           ...
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (311)
T 4agu_A          158 YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKS--DVDQLYLIRKTLGDLIPRHQQVFSTNQY  235 (311)
T ss_dssp             --------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCSCCHHHHHHHHTCGG
T ss_pred             ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhcccccccccccccccc
Confidence                    1223333222 2446889999999999999999999995332  222111111   00           000


Q ss_pred             Cc--cccCCCCC-C---CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          517 LQ--QFVDPTLS-S---FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       517 ~~--~~~~~~~~-~---~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..  .+.++... .   .....+..+.+++.+||+.||++|||++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          236 FSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             GTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             cccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            00  00011000 0   00123456889999999999999999999985

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=3.4e-37  Score=309.52  Aligned_cols=249  Identities=21%  Similarity=0.312  Sum_probs=182.7

Q ss_pred             hhhcccCcCCCeEEEEEEeC--CCc--EEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          301 DFSNVIGSSPIGTVYKGTLS--NGV--EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~--~~~--~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      .+.+.||+|+||.||+|++.  ++.  .||||.+.......  ....+.|.+|++++++++||||+++++++....   .
T Consensus        21 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~---~   95 (291)
T 1u46_A           21 RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ--PEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP---M   95 (291)
T ss_dssp             EEEEECC----CCCEEEEEECTTSCEEEEEEEC----------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS---C
T ss_pred             eeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCC--HHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC---c
Confidence            34678999999999999863  333  57888775432221  235678999999999999999999999997654   5


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|+||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++...
T Consensus        96 ~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~  172 (291)
T 1u46_A           96 KMVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLESKR--FIHRDLAARNLLLATRDLVKIGDFGLMRALP  172 (291)
T ss_dssp             EEEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred             eeeEecccCCCHHHHHHhc-cCCcCHHHHHHHHHHHHHHHHHHHhCC--cccCCCchheEEEcCCCCEEEcccccccccc
Confidence            8999999999999998643 345889999999999999999999998  9999999999999999999999999987653


Q ss_pred             hhhhh------hcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          457 MAEMA------ATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       457 ~~~~~------~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      .....      ...+..+.+||      ++.++||||||+++|||+| |+.||..  ....+............      
T Consensus       173 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~~~~~~~~~~------  244 (291)
T 1u46_A          173 QNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIG--LNGSQILHKIDKEGERL------  244 (291)
T ss_dssp             C-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHHHTSCCCC------
T ss_pred             ccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCccc--CCHHHHHHHHHccCCCC------
Confidence            22110      01111234443      5788999999999999999 9999943  33344444333321111      


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                         ..+...+..+.+++.+||+.||++||++.++++.|+++....
T Consensus       245 ---~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~  286 (291)
T 1u46_A          245 ---PRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTD  286 (291)
T ss_dssp             ---CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred             ---CCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCccc
Confidence               112234467999999999999999999999999999886543

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=5.6e-37  Score=307.09  Aligned_cols=238  Identities=16%  Similarity=0.230  Sum_probs=183.0

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.+.||+|+||.||+|... ++..||+|.+......   .....++.+|+..+.++ +||||+++++++...+  ..+
T Consensus        13 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~--~~~   87 (289)
T 1x8b_A           13 FHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAG---SVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDD--HML   87 (289)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTT---SHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETT--EEE
T ss_pred             hhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccc---cHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCC--eEE
Confidence            345688999999999999975 7899999988754322   23456788999999999 9999999999998877  679


Q ss_pred             EEEeeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC---------------
Q 007711          378 MVFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---------------  440 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~---------------  440 (592)
                      +||||+++|+|.+++...  ....+++..+..|+.+++.||+|||+++  |+||||||+||+++.               
T Consensus        88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~  165 (289)
T 1x8b_A           88 IQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMS--LVHMDIKPSNIFISRTSIPNAASEEGDEDD  165 (289)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC----------------
T ss_pred             EEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCC--EeecCCCHHHEEEcCCCCCccccccccccc
Confidence            999999999999998743  2256899999999999999999999998  999999999999984               


Q ss_pred             ----CCceEEecCCcchhhhhhh-----hhhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHH
Q 007711          441 ----DYAAKLSDLSFWNEIAMAE-----MAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY  510 (592)
Q Consensus       441 ----~~~~ki~DfGla~~~~~~~-----~~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~  510 (592)
                          ...+||+|||.++......     ..+.+|+.... ..++.++|||||||++|||++|+.|+...  .  .+ ...
T Consensus       166 ~~~~~~~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~--~--~~-~~~  240 (289)
T 1x8b_A          166 WASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG--D--QW-HEI  240 (289)
T ss_dssp             ----CCCEEECCCTTCEETTCSCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS--H--HH-HHH
T ss_pred             ccCCceEEEEcccccccccCCccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch--h--HH-HHH
Confidence                4479999999988664322     12233332222 23557899999999999999998876321  1  11 111


Q ss_pred             hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          511 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+.          ....+...+..+.+++.+||+.||++|||+.|+++
T Consensus       241 ~~~~----------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  279 (289)
T 1x8b_A          241 RQGR----------LPRIPQVLSQEFTELLKVMIHPDPERRPSAMALVK  279 (289)
T ss_dssp             HTTC----------CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HcCC----------CCCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence            1111          11122233457899999999999999999999875

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-36  Score=310.95  Aligned_cols=238  Identities=19%  Similarity=0.268  Sum_probs=180.9

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCC--CceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH--KNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H--~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.+.||+|+||.||++...++..||||++.....   .....+.|.+|++++.+++|  +||+++++++....  ..++|
T Consensus        13 i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~--~~~lv   87 (343)
T 3dbq_A           13 ILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA---DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ--YIYMV   87 (343)
T ss_dssp             EEEEESCCSSEEEEEEECTTSCEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEecCCCeEEEEEEeCCCCEEEEEEeecccc---chHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCC--EEEEE
Confidence            4578999999999999988899999999865432   23445789999999999986  99999999998877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      || +.+|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++ ++.+||+|||+++......
T Consensus        88 ~e-~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH~~~--iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~  161 (343)
T 3dbq_A           88 ME-CGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIHQHG--IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT  161 (343)
T ss_dssp             EC-CCSEEHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEE-TTEEEECCCSSSCCC----
T ss_pred             Ee-CCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCcceEEEE-CCcEEEeecccccccCccc
Confidence            99 458899999874  356899999999999999999999998  99999999999997 6789999999998654222


Q ss_pred             hh-----hcccccCCC-----------------CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC
Q 007711          460 MA-----ATSKKLSSA-----------------PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL  517 (592)
Q Consensus       460 ~~-----~~~~~~~~~-----------------~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~  517 (592)
                      ..     ...+..+.+                 ..++.++|||||||++|||+||+.||......... .......... 
T Consensus       162 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~-~~~~~~~~~~-  239 (343)
T 3dbq_A          162 TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISK-LHAIIDPNHE-  239 (343)
T ss_dssp             --------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHH-HHHHHCTTSC-
T ss_pred             ccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHH-HHHHhcCCcc-
Confidence            11     111222333                 34577899999999999999999999533222222 2222211110 


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                              ..++......+.+++.+||+.||++|||+.|+++.
T Consensus       240 --------~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h  274 (343)
T 3dbq_A          240 --------IEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH  274 (343)
T ss_dssp             --------CCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             --------cCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence                    01122223568899999999999999999999863

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=6.8e-37  Score=306.43  Aligned_cols=238  Identities=16%  Similarity=0.289  Sum_probs=187.1

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|+.. ++..||+|.+.......  ....+.+.+|++++++++||||+++++++...+  ..++|
T Consensus        17 ~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   92 (284)
T 2vgo_A           17 DIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEK--EGVEHQLRREIEIQSHLRHPNILRMYNYFHDRK--RIYLM   92 (284)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             eeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccch--HHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCC--EEEEE
Confidence            34588999999999999975 57789999886432111  123467899999999999999999999998876  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      |||+++|+|.+++...  ..+++.....++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||++...... 
T Consensus        93 ~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~  168 (284)
T 2vgo_A           93 LEFAPRGELYKELQKH--GRFDEQRSATFMEELADALHYCHERK--VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR  168 (284)
T ss_dssp             ECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCSGGGEEECTTCCEEECCCTTCEECSSSC
T ss_pred             EEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCHHHEEEcCCCCEEEecccccccCcccc
Confidence            9999999999998643  45899999999999999999999998  999999999999999999999999998654321 


Q ss_pred             ------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          459 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       459 ------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            ...+.+|+......++.++||||||+++|||+||+.||..  ....+..........           .++...
T Consensus       169 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~--~~~~~~~~~~~~~~~-----------~~~~~~  235 (284)
T 2vgo_A          169 RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDS--PSHTETHRRIVNVDL-----------KFPPFL  235 (284)
T ss_dssp             BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTTCC-----------CCCTTS
T ss_pred             cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCC--CCHhHHHHHHhcccc-----------CCCCcC
Confidence                  1223334433444578899999999999999999999943  233333333332211           112223


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      +..+.+++.+||+.||.+||+++|+++
T Consensus       236 ~~~~~~li~~~l~~~p~~Rps~~~ll~  262 (284)
T 2vgo_A          236 SDGSKDLISKLLRYHPPQRLPLKGVME  262 (284)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence            357889999999999999999999986

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=3.1e-36  Score=315.50  Aligned_cols=238  Identities=20%  Similarity=0.269  Sum_probs=181.2

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC--CCceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN--HKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~--H~niv~l~g~~~~~~~~~~~l  378 (592)
                      .+.+.||+|+||.||++...++..||||++.....   .....+.|.+|++++.+++  |+||+++++++...+  ..++
T Consensus        59 ~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~--~~~l  133 (390)
T 2zmd_A           59 SILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA---DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ--YIYM  133 (390)
T ss_dssp             EEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEE
T ss_pred             EEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccc---cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCC--EEEE
Confidence            34578999999999999988899999999865432   2345678999999999996  599999999998877  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||| +.+|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++ ++.+||+|||+++.....
T Consensus       134 v~E-~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~--ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~  207 (390)
T 2zmd_A          134 VME-CGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQHG--IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD  207 (390)
T ss_dssp             EEE-CCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHTTT--CCCCCCCGGGEEES-SSCEEECCCSSSCCC---
T ss_pred             EEe-cCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHEEEE-CCeEEEEecCccccccCC
Confidence            999 5688999998743  46889999999999999999999998  99999999999996 589999999999865422


Q ss_pred             h-----------hhhcccccCC-----------CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC
Q 007711          459 E-----------MAATSKKLSS-----------APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP  516 (592)
Q Consensus       459 ~-----------~~~~~~~~~~-----------~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~  516 (592)
                      .           ..+.+||...           ...++.++|||||||++|||+||+.||..... ..............
T Consensus       208 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~-~~~~~~~~~~~~~~  286 (390)
T 2zmd_A          208 TTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN-QISKLHAIIDPNHE  286 (390)
T ss_dssp             ------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCC-HHHHHHHHHCTTSC
T ss_pred             CccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhH-HHHHHHHHhCcccc
Confidence            1           1222332211           12467789999999999999999999953322 22222222222111


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .         .++......+.+++.+||+.||++||++.|+++
T Consensus       287 ~---------~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~  320 (390)
T 2zmd_A          287 I---------EFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA  320 (390)
T ss_dssp             C---------CCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             C---------CCCccchHHHHHHHHHHcccChhhCCCHHHHhh
Confidence            0         111222356889999999999999999999985

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=2.5e-37  Score=327.20  Aligned_cols=242  Identities=17%  Similarity=0.227  Sum_probs=184.1

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|+||.||+|+.. +++.||+|++.......  ......+.+|+.++..++||||++++++|.+.+  ..++|||
T Consensus        79 ~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~--~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~--~~~lV~E  154 (437)
T 4aw2_A           79 LKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLK--RAETACFREERDVLVNGDSKWITTLHYAFQDDN--NLYLVMD  154 (437)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHH--TTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSS--EEEEEEC
T ss_pred             EEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhh--HHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCC--EEEEEEe
Confidence            488999999999999976 47889999986432111  111234889999999999999999999998877  7899999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh--
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~--  459 (592)
                      ||++|+|.+++.. ....+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++......  
T Consensus       155 y~~gg~L~~~l~~-~~~~l~e~~~~~~~~qi~~aL~~LH~~g--iiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~  231 (437)
T 4aw2_A          155 YYVGGDLLTLLSK-FEDRLPEEMARFYLAEMVIAIDSVHQLH--YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTV  231 (437)
T ss_dssp             CCTTCBHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCE
T ss_pred             cCCCCcHHHHHHH-ccCCCCHHHHHHHHHHHHHHHHHHHhCC--eEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCc
Confidence            9999999999964 2456899999999999999999999999  9999999999999999999999999997653221  


Q ss_pred             --------hhhcccccCC-----CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          460 --------MAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       460 --------~~~~~~~~~~-----~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                              ..+.+||...     ...++.++|||||||++|||+||+.||..  .+..+.....+.......  ....  
T Consensus       232 ~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~--~~~~~~~~~i~~~~~~~~--~p~~--  305 (437)
T 4aw2_A          232 QSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYA--ESLVETYGKIMNHKERFQ--FPTQ--  305 (437)
T ss_dssp             ECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTHHHHCC--CCSS--
T ss_pred             ccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCC--CChhHHHHhhhhcccccc--CCcc--
Confidence                    1222333221     23367899999999999999999999953  334444333332110000  0111  


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCC--CCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEK--RPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~--RPs~~ev~~  559 (592)
                        ....+..+.+++.+|+..+|++  ||+++|+++
T Consensus       306 --~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~  338 (437)
T 4aw2_A          306 --VTDVSENAKDLIRRLICSREHRLGQNGIEDFKK  338 (437)
T ss_dssp             --CCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred             --cccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence              1123356889999999888888  999999875

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=3.1e-37  Score=323.97  Aligned_cols=239  Identities=19%  Similarity=0.232  Sum_probs=183.5

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|+||.||+|+.. ++..+|+|++.......  ....+.+.+|+++++.++|||||++++++.+..  ..++|||
T Consensus        74 ~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~--~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~--~~~lV~E  149 (410)
T 3v8s_A           74 VKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIK--RSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR--YLYMVME  149 (410)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH--TCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEEEC
T ss_pred             EEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhh--hHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC--EEEEEEe
Confidence            478999999999999975 58899999986422110  011234788999999999999999999998877  7899999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh-
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-  460 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~-  460 (592)
                      ||++|+|.++++.   ..+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....... 
T Consensus       150 ~~~gg~L~~~l~~---~~~~e~~~~~~~~qi~~aL~~LH~~g--ivHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~  224 (410)
T 3v8s_A          150 YMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIHSMG--FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMV  224 (410)
T ss_dssp             CCTTEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEE
T ss_pred             CCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCCHHHeeECCCCCEEEeccceeEeeccCCcc
Confidence            9999999999863   35889999999999999999999999  99999999999999999999999999976543211 


Q ss_pred             ---hhcccccCCCCC----------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          461 ---AATSKKLSSAPS----------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       461 ---~~~~~~~~~~~~----------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                         ....+..+++||          ++.++|||||||++|||+||+.||..  .+..+....++......   .-+..  
T Consensus       225 ~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~--~~~~~~~~~i~~~~~~~---~~p~~--  297 (410)
T 3v8s_A          225 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA--DSLVGTYSKIMNHKNSL---TFPDD--  297 (410)
T ss_dssp             ECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTHHHHC---CCCTT--
T ss_pred             cccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCC--CChhhHHHHHHhccccc---cCCCc--
Confidence               111122333433          56889999999999999999999953  33444444443321111   01111  


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCC--CCCHHHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEK--RPTMRDIAA  559 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~--RPs~~ev~~  559 (592)
                        ...+.++.+++.+||+.+|.+  ||+++||++
T Consensus       298 --~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~  329 (410)
T 3v8s_A          298 --NDISKEAKNLICAFLTDREVRLGRNGVEEIKR  329 (410)
T ss_dssp             --CCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred             --ccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence              112356889999999999988  999999986

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=4.7e-36  Score=303.47  Aligned_cols=241  Identities=17%  Similarity=0.237  Sum_probs=186.5

Q ss_pred             HhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      .+.+.+.||+|+||.||+++.. +|+.||+|.+......     ..+.+.+|++++++++||||+++++++....  ..+
T Consensus        10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~   82 (304)
T 2jam_A           10 TFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAF-----RDSSLENEIAVLKKIKHENIVTLEDIYESTT--HYY   82 (304)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-----------HHHHHHHHHHHCCCTTBCCEEEEEECSS--EEE
T ss_pred             cceeeeeccCCCCceEEEEEECCCCCEEEEEEEeccccc-----chHHHHHHHHHHHhCCCCCeeehhhhcccCC--EEE
Confidence            3445689999999999999964 6889999998743321     2356889999999999999999999998876  679


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE---cCCCceEEecCCcchh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL---TEDYAAKLSDLSFWNE  454 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl---~~~~~~ki~DfGla~~  454 (592)
                      +||||+++|+|.+++...  ..+++.....++.+++.||+|||+.+  |+||||||+||++   ++++.+||+|||+++.
T Consensus        83 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~  158 (304)
T 2jam_A           83 LVMQLVSGGELFDRILER--GVYTEKDASLVIQQVLSAVKYLHENG--IVHRDLKPENLLYLTPEENSKIMITDFGLSKM  158 (304)
T ss_dssp             EEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCSCCGGGCEESSSSTTCCEEBCSCSTTCC
T ss_pred             EEEEcCCCccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEEecCCCCCCEEEccCCccee
Confidence            999999999999988643  46899999999999999999999998  9999999999999   7889999999999875


Q ss_pred             hhhhh-------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          455 IAMAE-------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       455 ~~~~~-------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      .....       ..+.+|+......++.++||||||+++|||+||+.||..  ....+.......+.....   .    .
T Consensus       159 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~--~~~~~~~~~i~~~~~~~~---~----~  229 (304)
T 2jam_A          159 EQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYE--ETESKLFEKIKEGYYEFE---S----P  229 (304)
T ss_dssp             CCCBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHCCCCCC---T----T
T ss_pred             cCCCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHcCCCCCC---c----c
Confidence            43211       122333433333468899999999999999999999943  333343333333321111   1    1


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .....+..+.+++.+||+.||++||++.|+++
T Consensus       230 ~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (304)
T 2jam_A          230 FWDDISESAKDFICHLLEKDPNERYTCEKALS  261 (304)
T ss_dssp             TTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             ccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            12233457899999999999999999999986

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.2e-37  Score=314.25  Aligned_cols=235  Identities=17%  Similarity=0.238  Sum_probs=181.9

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCC---chhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDW---PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~---~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.+.||+|+||.||+|+. .++..||||.+........   .......+.+|++++++++||||+++++++...+  .
T Consensus        26 y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~--~  103 (335)
T 3dls_A           26 YSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG--F  103 (335)
T ss_dssp             EEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS--E
T ss_pred             eEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC--E
Confidence            34458899999999999985 5688999999875432211   0112335778999999999999999999998877  6


Q ss_pred             eEEEEeeCCCC-CchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          376 RMMVFEYAPNG-TLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       376 ~~lv~Ey~~~g-sL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      .++||||+..| +|.+++..  ...+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.
T Consensus       104 ~~lv~e~~~~g~~l~~~~~~--~~~l~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~  179 (335)
T 3dls_A          104 FQLVMEKHGSGLDLFAFIDR--HPRLDEPLASYIFRQLVSAVGYLRLKD--IIHRDIKDENIVIAEDFTIKLIDFGSAAY  179 (335)
T ss_dssp             EEEEEECCTTSCBHHHHHHT--CCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEEEeCCCCccHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eEEeccCHHHEEEcCCCcEEEeecccceE
Confidence            79999999877 99988863  346899999999999999999999998  99999999999999999999999999986


Q ss_pred             hhhhh--------hhhcccccCCCCC-CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          455 IAMAE--------MAATSKKLSSAPS-ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       455 ~~~~~--------~~~~~~~~~~~~~-~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      .....        ..+.+|+...... .+.++|||||||++|||+||+.||.....        ..      .....   
T Consensus       180 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--------~~------~~~~~---  242 (335)
T 3dls_A          180 LERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE--------TV------EAAIH---  242 (335)
T ss_dssp             CCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG--------GT------TTCCC---
T ss_pred             CCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH--------HH------hhccC---
Confidence            54322        1223333322222 37789999999999999999999942110        00      00000   


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        .+...+..+.+++.+||+.||++|||+.|+++
T Consensus       243 --~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~  274 (335)
T 3dls_A          243 --PPYLVSKELMSLVSGLLQPVPERRTTLEKLVT  274 (335)
T ss_dssp             --CSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             --CCcccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence              11123357899999999999999999999986

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=3.9e-36  Score=309.12  Aligned_cols=255  Identities=21%  Similarity=0.320  Sum_probs=193.5

Q ss_pred             HHHHHHhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc--CCCCceeeeeEEEecC
Q 007711          294 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK--VNHKNFVNLIGFCEEE  371 (592)
Q Consensus       294 el~~~~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~--l~H~niv~l~g~~~~~  371 (592)
                      +.....+.+.+.||+|+||.||+|+. +++.||||.+...        ....+.+|++++..  ++||||+++++++...
T Consensus        38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~--------~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~  108 (342)
T 1b6c_B           38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR--------EERSWFREAEIYQTVMLRHENILGFIAADNKD  108 (342)
T ss_dssp             HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG--------GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECC
T ss_pred             ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch--------hHHHHHHHHHHHHHhhcCCCcEEEEEeeeccc
Confidence            33444556678999999999999998 5889999987532        24567888888887  7899999999999875


Q ss_pred             CC--cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCeEeeCcCCCCeEEcCC
Q 007711          372 EP--FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH--------QLNPPIAHNYLNSSAVHLTED  441 (592)
Q Consensus       372 ~~--~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH--------~~~~~ivH~dLk~~NiLl~~~  441 (592)
                      ..  ...++||||+++|+|.+++..   ..+++..+..++.+++.||+|||        +.+  |+||||||+|||++.+
T Consensus       109 ~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~--ivH~Dlkp~NIll~~~  183 (342)
T 1b6c_B          109 NGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA--IAHRDLKSKNILVKKN  183 (342)
T ss_dssp             CSSCCCEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE--EECSCCSGGGEEECTT
T ss_pred             CCccceeEEEEeecCCCcHHHHHhc---cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCC--eeeCCCCHHHEEECCC
Confidence            42  146899999999999999963   35899999999999999999999        667  9999999999999999


Q ss_pred             CceEEecCCcchhhhhhhhh-------hcccccCCCCC------------CCCCCcchhhHHHHHHHHhC----------
Q 007711          442 YAAKLSDLSFWNEIAMAEMA-------ATSKKLSSAPS------------ASLESNVYNFGVLLFEMVTG----------  492 (592)
Q Consensus       442 ~~~ki~DfGla~~~~~~~~~-------~~~~~~~~~~~------------~s~ksDVwSfGvvl~El~tG----------  492 (592)
                      +.+||+|||+++........       ......+.+||            ++.++|||||||++|||+||          
T Consensus       184 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~  263 (342)
T 1b6c_B          184 GTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDY  263 (342)
T ss_dssp             SCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCC
T ss_pred             CCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCccccc
Confidence            99999999998765432211       01112333443            12579999999999999999          


Q ss_pred             CCcccCCC---CChHHHHHHHhcCCCCCccccCCCCCC--CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          493 RLPYLVDN---GSLEDWAADYLSGVQPLQQFVDPTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       493 ~~P~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      +.||....   .....+........      ..+....  ...++...+.+++.+||+.||++||++.|+++.|+++...
T Consensus       264 ~~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~  337 (342)
T 1b6c_B          264 QLPYYDLVPSDPSVEEMRKVVCEQK------LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  337 (342)
T ss_dssp             CCTTTTTSCSSCCHHHHHHHHTTSC------CCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             ccCccccCcCcccHHHHHHHHHHHH------hCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence            77885322   23333333322211      1111111  1235677899999999999999999999999999999755


Q ss_pred             C
Q 007711          568 T  568 (592)
Q Consensus       568 ~  568 (592)
                      .
T Consensus       338 ~  338 (342)
T 1b6c_B          338 E  338 (342)
T ss_dssp             T
T ss_pred             h
Confidence            3

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=1.1e-36  Score=312.58  Aligned_cols=237  Identities=16%  Similarity=0.253  Sum_probs=186.4

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||++... ++..+|+|++.......  ....+.+.+|+.++++++|+||+++++++...+  ..++||
T Consensus        45 ~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~  120 (335)
T 2owb_A           45 RGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLK--PHQREKMSMEISIHRSLAHQHVVGFHGFFEDND--FVFVVL  120 (335)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCS--HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC--eEEEEE
Confidence            4578999999999999975 47889999886543222  345677999999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++++|.+++...  ..+++..+..++.+++.||+|||+++  |+||||||+||+++.++.+||+|||+++.......
T Consensus       121 e~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  196 (335)
T 2owb_A          121 ELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNR--VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE  196 (335)
T ss_dssp             CCCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             ecCCCCCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCC--CEecCCCchhEEEcCCCCEEEeeccCceecccCcc
Confidence            999999999987643  46899999999999999999999998  99999999999999999999999999876532211


Q ss_pred             h---hcccccCCCC------CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          461 A---ATSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       461 ~---~~~~~~~~~~------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                      .   ......+.+|      .++.++||||||+++|||+||+.||..  ....+...........           .+..
T Consensus       197 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~--~~~~~~~~~~~~~~~~-----------~~~~  263 (335)
T 2owb_A          197 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFET--SCLKETYLRIKKNEYS-----------IPKH  263 (335)
T ss_dssp             CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHTCCC-----------CCTT
T ss_pred             cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCC--CCHHHHHHHHhcCCCC-----------CCcc
Confidence            0   0111223333      367899999999999999999999943  3333333333222111           1122


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+.+++.+||+.||++||++.|+++
T Consensus       264 ~~~~~~~li~~~l~~dp~~Rps~~ell~  291 (335)
T 2owb_A          264 INPVAASLIQKMLQTDPTARPTINELLN  291 (335)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            3356889999999999999999999986

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=1.3e-36  Score=304.75  Aligned_cols=231  Identities=14%  Similarity=0.178  Sum_probs=181.0

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|+.. +++.||||.+.......  ....+.|.+|+..+.+++||||+++++++...+  ..++|
T Consensus        34 ~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~--~~~lv  109 (286)
T 3uqc_A           34 RLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLP--DDVLQETLSRTLRLSRIDKPGVARVLDVVHTRA--GGLVV  109 (286)
T ss_dssp             EEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSC--HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             EEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccC--HHHHHHHHHHHHHHhcCCCCCcceeeEEEEECC--cEEEE
Confidence            34578999999999999975 48999999986543322  345578999999999999999999999998877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++++|.+++...    .......+|+.+++.||+|||+.+  |+||||||+|||+++++.+||++++..       
T Consensus       110 ~e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~lH~~g--ivH~Dikp~NIll~~~g~~kl~~~~~~-------  176 (286)
T 3uqc_A          110 AEWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADAAHRAG--VALSIDHPSRVRVSIDGDVVLAYPATM-------  176 (286)
T ss_dssp             EECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEEETTSCEEECSCCCC-------
T ss_pred             EEecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHCC--CccCCCCcccEEEcCCCCEEEEecccc-------
Confidence            9999999999998532    355578899999999999999999  999999999999999999999977642       


Q ss_pred             hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC---CCCHHHHHHH
Q 007711          460 MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS---SFDEEQLETL  536 (592)
Q Consensus       460 ~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l  536 (592)
                                 +.++.++|||||||++|||+||+.||.......         ..............   ......+.++
T Consensus       177 -----------~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l  236 (286)
T 3uqc_A          177 -----------PDANPQDDIRGIGASLYALLVNRWPLPEAGVRS---------GLAPAERDTAGQPIEPADIDRDIPFQI  236 (286)
T ss_dssp             -----------TTCCHHHHHHHHHHHHHHHHHSEECSCCCSBCC---------CSEECCBCTTSCBCCHHHHCTTSCHHH
T ss_pred             -----------CCCCchhHHHHHHHHHHHHHHCCCCCCcCCcch---------hhHHHHHHhccCCCChhhcccCCCHHH
Confidence                       246889999999999999999999995332100         00000000111000   1122345679


Q ss_pred             HHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          537 GELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       537 ~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                      .+++.+||+.||++| |+.|+++.|+++.....
T Consensus       237 ~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~  268 (286)
T 3uqc_A          237 SAVAARSVQGDGGIR-SASTLLNLMQQATAVAD  268 (286)
T ss_dssp             HHHHHHHHCTTSSCC-CHHHHHHHHHHHHC---
T ss_pred             HHHHHHHcccCCccC-CHHHHHHHHHHHhccCC
Confidence            999999999999999 99999999999987643

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=5.3e-37  Score=308.77  Aligned_cols=247  Identities=17%  Similarity=0.224  Sum_probs=186.7

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.+.||+|+||.||+|+. .++..||||++......       .++.+|++++..++|++++..++++..... ..++
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-------~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~-~~~l   82 (296)
T 4hgt_A           11 YRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH-------PQLHIESKIYKMMQGGVGIPTIRWCGAEGD-YNVM   82 (296)
T ss_dssp             CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---C-------CCHHHHHHHHHHHTTSTTCCCEEEEEEETT-EEEE
T ss_pred             eEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccc-------hHHHHHHHHHHHhcCCCCCCeeeeecCCCC-ceEE
Confidence            34568899999999999995 57889999986544322       247889999999999988888777754432 5789


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE---cCCCceEEecCCcchhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL---TEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl---~~~~~~ki~DfGla~~~  455 (592)
                      ||||+ +|+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||+   ++++.+||+|||+++..
T Consensus        83 v~e~~-~~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~~--ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~  158 (296)
T 4hgt_A           83 VMELL-GPSLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHSKN--FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKY  158 (296)
T ss_dssp             EEECC-CCBHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECCGGGTTCEEECCCTTCEEC
T ss_pred             EEEcc-CCCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeeeeccCCCCeEEEecCccceec
Confidence            99999 9999999863 2346899999999999999999999999  9999999999999   78999999999999865


Q ss_pred             hhhh----------------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCC----h-HHHHHHHhcCC
Q 007711          456 AMAE----------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS----L-EDWAADYLSGV  514 (592)
Q Consensus       456 ~~~~----------------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~----~-~~~~~~~~~~~  514 (592)
                      ....                ..+.+|+......++.++|||||||++|||+||+.||......    . .......... 
T Consensus       159 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-  237 (296)
T 4hgt_A          159 RDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST-  237 (296)
T ss_dssp             BCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS-
T ss_pred             cCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccc-
Confidence            4321                1222333333345788999999999999999999999643211    1 1111111110 


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          515 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                       .. ...       ....+..+.+++.+||+.||++||++.++++.|+++....
T Consensus       238 -~~-~~~-------~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~  282 (296)
T 4hgt_A          238 -PI-EVL-------CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             -CH-HHH-------TTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             -hh-hhh-------hccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Confidence             00 000       1112357999999999999999999999999999997653

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.2e-36  Score=314.05  Aligned_cols=247  Identities=17%  Similarity=0.217  Sum_probs=178.6

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cce
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~~  376 (592)
                      +.+.||+|+||.||+|.. .+|..||||++.....   .....+.+.+|+++++.++||||+++++++.....    ...
T Consensus        29 ~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~  105 (367)
T 1cm8_A           29 DLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ---SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDF  105 (367)
T ss_dssp             EEEEC------CEEEEEETTTCCEEEEEECSSTTS---SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCC
T ss_pred             EeEEeeecCCeEEEEEEECCCCCEEEEEEeCcccc---CHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceE
Confidence            457899999999999996 4689999998854322   23446778999999999999999999999976531    135


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++||||+ +++|.+++..   ..+++.....++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       106 ~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  179 (367)
T 1cm8_A          106 YLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAAG--IIHRDLKPGNLAVNEDCELKILDFGLARQAD  179 (367)
T ss_dssp             EEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCcCHHHEEEcCCCCEEEEeeecccccc
Confidence            8999999 8899998864   46899999999999999999999999  9999999999999999999999999998654


Q ss_pred             hhhhhhcccccCCCC-------CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC-------------
Q 007711          457 MAEMAATSKKLSSAP-------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP-------------  516 (592)
Q Consensus       457 ~~~~~~~~~~~~~~~-------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~-------------  516 (592)
                      ........+..+++|       .++.++|||||||++|||+||+.||...  +..+...........             
T Consensus       180 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~l~~i~~~~g~~~~~~~~~~~~~~  257 (367)
T 1cm8_A          180 SEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS--DHLDQLKEIMKVTGTPPAEFVQRLQSDE  257 (367)
T ss_dssp             SSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCHHHHHTCSCHH
T ss_pred             cccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcCCCCHHHHHHhhhHH
Confidence            322111122233333       4788999999999999999999999532  222222211110000             


Q ss_pred             -------CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          517 -------LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       517 -------~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                             +..................+.+++.+||+.||++|||++|+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~  307 (367)
T 1cm8_A          258 AKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA  307 (367)
T ss_dssp             HHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence                   0000011111112233467899999999999999999999987

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=7.1e-37  Score=307.94  Aligned_cols=245  Identities=17%  Similarity=0.220  Sum_probs=186.6

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+. .+++.||||++......       +++.+|+++++.++|++++..++++..... ..++||
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-------~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~-~~~lv~   84 (296)
T 3uzp_A           13 LGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH-------PQLHIESKIYKMMQGGVGIPTIRWCGAEGD-YNVMVM   84 (296)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSC-------CHHHHHHHHHHHHTTSTTCCCEEEEEEETT-EEEEEE
T ss_pred             EEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcch-------hHHHHHHHHHHHhhcCCCCCccccccCCCC-ceEEEE
Confidence            457899999999999996 67899999987654322       358899999999999988877777754432 568999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE---cCCCceEEecCCcchhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL---TEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl---~~~~~~ki~DfGla~~~~~  457 (592)
                      ||+ +|+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||+   ++++.+||+|||+++....
T Consensus        85 e~~-~~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~  160 (296)
T 3uzp_A           85 ELL-GPSLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHSKN--FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD  160 (296)
T ss_dssp             ECC-CCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred             Eec-CCCHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccc
Confidence            999 9999999863 3356899999999999999999999998  9999999999999   5889999999999986543


Q ss_pred             hhh----------------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC----ChH-HHHHHHhcCCCC
Q 007711          458 AEM----------------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG----SLE-DWAADYLSGVQP  516 (592)
Q Consensus       458 ~~~----------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~----~~~-~~~~~~~~~~~~  516 (592)
                      ...                .+.+|+......++.++|||||||++|||+||+.||.....    ... .........  .
T Consensus       161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~--~  238 (296)
T 3uzp_A          161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST--P  238 (296)
T ss_dssp             TTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS--C
T ss_pred             cccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCC--c
Confidence            221                12222333333478899999999999999999999964221    111 111111110  0


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCC
Q 007711          517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  568 (592)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~  568 (592)
                      . ...       ....+..+.+++.+||+.||++||++.++++.|+++....
T Consensus       239 ~-~~~-------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~  282 (296)
T 3uzp_A          239 I-EVL-------CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             H-HHH-------TTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             h-HHH-------HhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhc
Confidence            0 000       1122357899999999999999999999999999997554

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=3.6e-36  Score=310.26  Aligned_cols=270  Identities=12%  Similarity=0.147  Sum_probs=200.1

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCc------------hhHHHHHHHHHHHHhcCCCCceeeeeEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP------------KNLEVQFRKKIDTLSKVNHKNFVNLIGFC  368 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~------------~~~~~~f~~e~~~l~~l~H~niv~l~g~~  368 (592)
                      .+.+.||+|+||.||+|.. ++..||+|.+.........            ....+.|.+|++++++++||||+++++++
T Consensus        34 ~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~  112 (348)
T 2pml_X           34 RIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGII  112 (348)
T ss_dssp             EEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCSEEE
T ss_pred             EEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence            3457899999999999999 8999999998754332210            01126799999999999999999999999


Q ss_pred             ecCCCcceEEEEeeCCCCCchhh------ccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCC
Q 007711          369 EEEEPFTRMMVFEYAPNGTLFEH------IHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTED  441 (592)
Q Consensus       369 ~~~~~~~~~lv~Ey~~~gsL~~~------l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~  441 (592)
                      ...+  ..++||||+++|+|.++      +.......+++..+..++.+++.||+|||+ .+  ++||||||+||+++.+
T Consensus       113 ~~~~--~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~--i~H~dl~p~Nil~~~~  188 (348)
T 2pml_X          113 TNYD--EVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKN--ICHRDVKPSNILMDKN  188 (348)
T ss_dssp             ESSS--EEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSC--EECCCCCGGGEEECTT
T ss_pred             eeCC--eEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCC--EeecCCChHhEEEcCC
Confidence            8877  67999999999999998      654446789999999999999999999998 88  9999999999999999


Q ss_pred             CceEEecCCcchhhhhh-------hhhhcccccCCCC-CCCC-CCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhc
Q 007711          442 YAAKLSDLSFWNEIAMA-------EMAATSKKLSSAP-SASL-ESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS  512 (592)
Q Consensus       442 ~~~ki~DfGla~~~~~~-------~~~~~~~~~~~~~-~~s~-ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~  512 (592)
                      +.+||+|||+++.....       ...+.+|+..... .++. ++||||||+++|||+||+.||...... .+.......
T Consensus       189 ~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~i~~  267 (348)
T 2pml_X          189 GRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISL-VELFNNIRT  267 (348)
T ss_dssp             SCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS-HHHHHHHTS
T ss_pred             CcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH-HHHHHHHhc
Confidence            99999999998765322       1223333333222 3344 899999999999999999999543321 333333333


Q ss_pred             CCCCCccccC----CCC----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCCCCccCcccHHHH
Q 007711          513 GVQPLQQFVD----PTL----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEI  584 (592)
Q Consensus       513 ~~~~~~~~~~----~~~----~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~~p~~~~~~~~~~  584 (592)
                      ..........    +..    .......+..+.+++.+||+.||.+||++.|+++             .|.+....|.++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~-------------hp~f~~~~~~~~  334 (348)
T 2pml_X          268 KNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK-------------HEWLADTNIEDL  334 (348)
T ss_dssp             CCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT-------------SGGGTTCCHHHH
T ss_pred             cCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc-------------CccccCCCHHHH
Confidence            3211111000    000    0011234467899999999999999999999975             456666677776


Q ss_pred             Hhhhc
Q 007711          585 EILST  589 (592)
Q Consensus       585 ~~~~~  589 (592)
                      +.+..
T Consensus       335 ~~~~~  339 (348)
T 2pml_X          335 REFSK  339 (348)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=5e-37  Score=319.69  Aligned_cols=246  Identities=9%  Similarity=0.039  Sum_probs=166.9

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHH---HHhcCCCCceeeee-------EEEec
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKID---TLSKVNHKNFVNLI-------GFCEE  370 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~---~l~~l~H~niv~l~-------g~~~~  370 (592)
                      +.+.||+|+||.||+|+.. +|..||||++......  .....+.+.+|++   .++. +||||++++       +++..
T Consensus        66 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~~~  142 (371)
T 3q60_A           66 LVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAEN--SRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAVAV  142 (371)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTT--HHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEEEE
T ss_pred             eeeeccCCCCEEEEEEEECCCCceeEEEEEEecccc--cccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehheec
Confidence            4578999999999999964 7899999998764422  2334567788854   5555 799988754       44433


Q ss_pred             CCC---------------cceEEEEeeCCCCCchhhccccCCCCCCHHHH------HHHHHHHHHHHHHhhcCCCCeEee
Q 007711          371 EEP---------------FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR------LRIAMGMAYCLEHMHQLNPPIAHN  429 (592)
Q Consensus       371 ~~~---------------~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~------~~ia~~ia~gl~yLH~~~~~ivH~  429 (592)
                      .+.               ...++|||||+ |+|.+++.... ..+.+..+      ..++.+++.||+|||+.+  |+||
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~--ivHr  218 (371)
T 3q60_A          143 QSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD-FVYVFRGDEGILALHILTAQLIRLAANLQSKG--LVHG  218 (371)
T ss_dssp             TTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH-HSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--EEET
T ss_pred             CCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc-cccchhhhhhhhhHHHHHHHHHHHHHHHHHCC--CccC
Confidence            221               13699999998 89999997531 23355555      788899999999999999  9999


Q ss_pred             CcCCCCeEEcCCCceEEecCCcchhhhhhh------hhhcccccCCC--CCCCCCCcchhhHHHHHHHHhCCCcccCCCC
Q 007711          430 YLNSSAVHLTEDYAAKLSDLSFWNEIAMAE------MAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDNG  501 (592)
Q Consensus       430 dLk~~NiLl~~~~~~ki~DfGla~~~~~~~------~~~~~~~~~~~--~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~  501 (592)
                      ||||+|||++.++.+||+|||+++......      ..+.+||....  ..++.++|||||||++|||+||+.||.....
T Consensus       219 Dikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~  298 (371)
T 3q60_A          219 HFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTP  298 (371)
T ss_dssp             TCSGGGEEECTTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCT
T ss_pred             cCCHHHEEECCCCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCc
Confidence            999999999999999999999998664322      22333443333  3478899999999999999999999964322


Q ss_pred             ChHHHHHHHhcCCCCCccccCCCC-CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          502 SLEDWAADYLSGVQPLQQFVDPTL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .....    ... ........... .......+..+.+++.+||+.||++|||+.|+++
T Consensus       299 ~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          299 GIKGS----WKR-PSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             TCTTC----CCB-CCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred             ccccc----hhh-hhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            11000    000 00000000000 0111234567999999999999999999999864

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=1.4e-36  Score=325.41  Aligned_cols=248  Identities=14%  Similarity=0.182  Sum_probs=185.2

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCC-ceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK-NFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~-niv~l~g~~~~~~~~~~~l  378 (592)
                      .+.+.||+|+||.||+|+. .++..||||++......       .++..|++++..++|. ++..+..++...+  ..++
T Consensus        10 ~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~-------~~~~~E~~il~~L~~~~~i~~i~~~~~~~~--~~~l   80 (483)
T 3sv0_A           10 RLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH-------PQLLYESKIYRILQGGTGIPNVRWFGVEGD--YNVL   80 (483)
T ss_dssp             ECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS-------CCHHHHHHHHHHTTTSTTCCCEEEEEEETT--EEEE
T ss_pred             EEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc-------HHHHHHHHHHHHhcCCCCCCeEEEEEeeCC--EEEE
Confidence            3457899999999999996 56899999987654332       2478899999999875 4555555555555  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE---cCCCceEEecCCcchhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL---TEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl---~~~~~~ki~DfGla~~~  455 (592)
                      ||||+ +++|.+++.. ....+++..++.|+.+|+.||+|||+++  |+||||||+|||+   +.++.+||+|||+++..
T Consensus        81 vme~~-g~sL~~ll~~-~~~~l~~~~~~~i~~qi~~aL~yLH~~g--IvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~  156 (483)
T 3sv0_A           81 VMDLL-GPSLEDLFNF-CSRKLSLKTVLMLADQMINRVEFVHSKS--FLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKY  156 (483)
T ss_dssp             EEECC-CCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECCGGGTTCEEECCCTTCEEC
T ss_pred             EEECC-CCCHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccCcceEEEecCCCCCeEEEEeCCcceec
Confidence            99999 9999999863 2456999999999999999999999999  9999999999999   68899999999999866


Q ss_pred             hhhhh----------------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC-ChHHHHHHHhcCCCCCc
Q 007711          456 AMAEM----------------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPLQ  518 (592)
Q Consensus       456 ~~~~~----------------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~~~  518 (592)
                      .....                .+.+++......++.++|||||||++|||+||+.||..... ...+.........  ..
T Consensus       157 ~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~--~~  234 (483)
T 3sv0_A          157 RDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKK--VA  234 (483)
T ss_dssp             BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHH--HH
T ss_pred             cCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhcc--cc
Confidence            43221                12223333334578899999999999999999999965332 2222222111110  00


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       519 ~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                          .........++.++.+++.+||+.||++||++.+|++.|++++..
T Consensus       235 ----~~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~  279 (483)
T 3sv0_A          235 ----TSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIR  279 (483)
T ss_dssp             ----SCHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             ----ccHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHH
Confidence                000000112235799999999999999999999999999998653

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=2.9e-36  Score=300.37  Aligned_cols=238  Identities=21%  Similarity=0.331  Sum_probs=185.6

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|... +|+.||||.+.......  ....+.+.+|++++++++||||+++++++...+  ..++|
T Consensus        14 ~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   89 (276)
T 2h6d_A           14 VLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRS--LDVVGKIKREIQNLKLFRHPHIIKLYQVISTPT--DFFMV   89 (276)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccc--hhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC--eEEEE
Confidence            34578999999999999975 68999999986532211  123467899999999999999999999998876  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++++|.+++...  ..+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++......
T Consensus        90 ~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~  165 (276)
T 2h6d_A           90 MEYVSGGELFDYICKH--GRVEEMEARRLFQQILSAVDYCHRHM--VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE  165 (276)
T ss_dssp             EECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHHC--SSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--
T ss_pred             EeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCChhhEEECCCCCEEEeecccccccCCCc
Confidence            9999999999998643  45899999999999999999999998  9999999999999999999999999987654321


Q ss_pred             --------hhhcccccCCCCC-CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 --------MAATSKKLSSAPS-ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 --------~~~~~~~~~~~~~-~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                              ..+.+|+...... .+.++||||||+++|||+||+.||..  ....+.......+...           .+.
T Consensus       166 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~-----------~~~  232 (276)
T 2h6d_A          166 FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDD--EHVPTLFKKIRGGVFY-----------IPE  232 (276)
T ss_dssp             -----------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCC-----------CCT
T ss_pred             ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCC--CcHHHHHHHhhcCccc-----------Cch
Confidence                    1222333332222 35789999999999999999999943  3333333333322111           122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+..+.+++.+||+.||++||++.|+++
T Consensus       233 ~~~~~l~~li~~~l~~~p~~Rps~~~~l~  261 (276)
T 2h6d_A          233 YLNRSVATLLMHMLQVDPLKRATIKDIRE  261 (276)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             hcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence            23356889999999999999999999987

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=1.1e-36  Score=311.77  Aligned_cols=247  Identities=14%  Similarity=0.185  Sum_probs=178.1

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|.. .++..||||++......   ....+.+.+|++++++++||||+++++++....  ..++|
T Consensus        37 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv  111 (329)
T 3gbz_A           37 RRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEE---EGVPGTAIREVSLLKELQHRNIIELKSVIHHNH--RLHLI  111 (329)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC-----------CHHHHHHGGGCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             EEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccc---cccchhHHHHHHHHHHcCCCCcceEEEEEecCC--EEEEE
Confidence            3457899999999999985 47889999988644322   233456889999999999999999999998877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE-----cCCCceEEecCCcchh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL-----TEDYAAKLSDLSFWNE  454 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl-----~~~~~~ki~DfGla~~  454 (592)
                      |||++ |+|.+++...  ..+++..+..|+.+++.||+|||+.+  |+||||||+|||+     ++++.+||+|||+++.
T Consensus       112 ~e~~~-~~L~~~~~~~--~~~~~~~~~~i~~ql~~~l~~LH~~~--ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~  186 (329)
T 3gbz_A          112 FEYAE-NDLKKYMDKN--PDVSMRVIKSFLYQLINGVNFCHSRR--CLHRDLKPQNLLLSVSDASETPVLKIGDFGLARA  186 (329)
T ss_dssp             EECCS-EEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEEC-----CCEEEECCTTHHHH
T ss_pred             EecCC-CCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhCC--EECCCCCHHHEEEecCCCCccceEEECcCCCccc
Confidence            99997 5999988643  45899999999999999999999998  9999999999999     4556699999999987


Q ss_pred             hhhhh---------hhhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC-----Ccc
Q 007711          455 IAMAE---------MAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP-----LQQ  519 (592)
Q Consensus       455 ~~~~~---------~~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~-----~~~  519 (592)
                      .....         ..+.+||.... ..++.++|||||||++|||+||+.||...  ...+...........     ...
T Consensus       187 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~  264 (329)
T 3gbz_A          187 FGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGD--SEIDQLFKIFEVLGLPDDTTWPG  264 (329)
T ss_dssp             HC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCTTTSTT
T ss_pred             cCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCC--CHHHHHHHHHHHhCCCchhhhhh
Confidence            64221         11233333322 34788999999999999999999999532  222222222211000     000


Q ss_pred             c------cC--CCCCCC------CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          520 F------VD--PTLSSF------DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       520 ~------~~--~~~~~~------~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .      ..  +.....      ......++.+++.+||+.||++|||++|+++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          265 VTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             GGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence            0      00  000000      0113467889999999999999999999875

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=3.9e-36  Score=312.20  Aligned_cols=240  Identities=15%  Similarity=0.230  Sum_probs=186.2

Q ss_pred             hhcccCcCCCeEEEEEE------eCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC---CCceeeeeEEEecCC
Q 007711          302 FSNVIGSSPIGTVYKGT------LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN---HKNFVNLIGFCEEEE  372 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~------~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~---H~niv~l~g~~~~~~  372 (592)
                      +.+.||+|+||.||+|.      ...++.||||++....        ..+|..|++++.+++   |+||+++++++...+
T Consensus        69 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--------~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~  140 (365)
T 3e7e_A           69 VHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN--------PWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQN  140 (365)
T ss_dssp             EEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC--------HHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSS
T ss_pred             EEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC--------hhHHHHHHHHHHHhhhhhhhhhhhhheeeecCC
Confidence            45789999999999994      4568899999875321        356888888888887   999999999998877


Q ss_pred             CcceEEEEeeCCCCCchhhcccc---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC---------
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIK---ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---------  440 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~---~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~---------  440 (592)
                        ..++|||||++|+|.+++...   ....++|..+..|+.|++.||+|||+++  |+||||||+|||++.         
T Consensus       141 --~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~--ivHrDiKp~NIll~~~~~~~~~~~  216 (365)
T 3e7e_A          141 --GSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCE--IIHGDIKPDNFILGNGFLEQDDED  216 (365)
T ss_dssp             --CEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCSGGGEEECGGGTCC----
T ss_pred             --CcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCC--eecCCCCHHHEEecccccCccccc
Confidence              679999999999999999642   3457999999999999999999999998  999999999999998         


Q ss_pred             --CCceEEecCCcchhhhhh-----------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHH
Q 007711          441 --DYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA  507 (592)
Q Consensus       441 --~~~~ki~DfGla~~~~~~-----------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~  507 (592)
                        ++.+||+|||+++.....           ...+.++|......++.++|||||||++|||+||+.||......     
T Consensus       217 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~-----  291 (365)
T 3e7e_A          217 DLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGG-----  291 (365)
T ss_dssp             --CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETT-----
T ss_pred             cccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCC-----
Confidence              899999999999754311           11222333333334789999999999999999999999432210     


Q ss_pred             HHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCC-CCHHHHHHHHHhhhCCCCC
Q 007711          508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKR-PTMRDIAAILREITGITPD  570 (592)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~R-Ps~~ev~~~L~~i~~~~~~  570 (592)
                                ...........+  ..+.+.+++..|++.+|.+| |+++++.+.|++++.....
T Consensus       292 ----------~~~~~~~~~~~~--~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~~~  343 (365)
T 3e7e_A          292 ----------ECKPEGLFRRLP--HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQHYT  343 (365)
T ss_dssp             ----------EEEECSCCTTCS--SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             ----------ceeechhccccC--cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHhhh
Confidence                      000111111111  23567789999999999998 7899999999998765443

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.9e-36  Score=317.30  Aligned_cols=250  Identities=16%  Similarity=0.213  Sum_probs=176.0

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.+.||+|+||.||+|.. .+|..||||++.....   .....+.+.+|+.++.++. ||||+++++++...+....+
T Consensus        11 y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~---~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~   87 (388)
T 3oz6_A           11 YELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQ---NSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVY   87 (388)
T ss_dssp             EEEEEC-------CEEEEEETTTCCEEEEEEECC--C---CHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEE
T ss_pred             eEEEEEeeeCCCeEEEEEEECCCCCEEEEEEeccccc---ChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEE
Confidence            34458899999999999985 4689999998854321   1334567889999999997 99999999999765433579


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +|||||+ |+|.++++.   ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....
T Consensus        88 lv~e~~~-~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~~--ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  161 (388)
T 3oz6_A           88 LVFDYME-TDLHAVIRA---NILEPVHKQYVVYQLIKVIKYLHSGG--LLHRDMKPSNILLNAECHVKVADFGLSRSFVN  161 (388)
T ss_dssp             EEEECCS-EEHHHHHHH---TCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEESSS
T ss_pred             EEecccC-cCHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCC--EEeCCCCHHHeEEcCCCCEEecCCcccccccc
Confidence            9999997 689888864   46899999999999999999999999  99999999999999999999999999975421


Q ss_pred             ------------------------------hhhhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHH
Q 007711          458 ------------------------------AEMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDW  506 (592)
Q Consensus       458 ------------------------------~~~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~  506 (592)
                                                    +...+.+|+... ...++.++|||||||++|||+||+.||...  +..+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~--~~~~~  239 (388)
T 3oz6_A          162 IRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS--STMNQ  239 (388)
T ss_dssp             CCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHH
T ss_pred             cccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC--CHHHH
Confidence                                          111223333322 244788999999999999999999999532  22222


Q ss_pred             HHHHhcCCCCC-cccc----------------------CCCCCCC-------------CHHHHHHHHHHHHHhcccCCCC
Q 007711          507 AADYLSGVQPL-QQFV----------------------DPTLSSF-------------DEEQLETLGELIKSCVRADPEK  550 (592)
Q Consensus       507 ~~~~~~~~~~~-~~~~----------------------~~~~~~~-------------~~~~~~~l~~l~~~Cl~~dP~~  550 (592)
                      ........... ....                      .......             ...+...+.+++.+||+.||++
T Consensus       240 ~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~  319 (388)
T 3oz6_A          240 LERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNK  319 (388)
T ss_dssp             HHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGG
T ss_pred             HHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCccc
Confidence            22221100000 0000                      0000000             0023457899999999999999


Q ss_pred             CCCHHHHHHH
Q 007711          551 RPTMRDIAAI  560 (592)
Q Consensus       551 RPs~~ev~~~  560 (592)
                      |||++|+++.
T Consensus       320 R~t~~e~l~H  329 (388)
T 3oz6_A          320 RISANDALKH  329 (388)
T ss_dssp             SCCHHHHTTS
T ss_pred             CCCHHHHhCC
Confidence            9999999864

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.3e-36  Score=313.52  Aligned_cols=252  Identities=17%  Similarity=0.170  Sum_probs=180.9

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.+.||+|+||.||+|+.. +|..||||.+.............+.+.+|++++++++||||+++++++....  ..++
T Consensus        12 y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~l   89 (346)
T 1ua2_A           12 YEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS--NISL   89 (346)
T ss_dssp             -CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT--CCEE
T ss_pred             cEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC--ceEE
Confidence            345688999999999999964 5899999998654332211222346889999999999999999999998776  5799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||||+++ +|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....
T Consensus        90 v~e~~~~-~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~  165 (346)
T 1ua2_A           90 VFDFMET-DLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLHQHW--ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSP  165 (346)
T ss_dssp             EEECCSE-EHHHHHTT-CCSSCCSSHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSC
T ss_pred             EEEcCCC-CHHHHHHh-cCcCCCHHHHHHHHHHHHHHHHHHHHCC--EECCCCCHHHEEEcCCCCEEEEecccceeccCC
Confidence            9999985 88888753 3346888899999999999999999999  999999999999999999999999999876422


Q ss_pred             hh---------hhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-----CCccc---
Q 007711          459 EM---------AATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----PLQQF---  520 (592)
Q Consensus       459 ~~---------~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----~~~~~---  520 (592)
                      ..         .+.+|+... ...++.++|||||||++|||++|+.||...  ...+..........     .+...   
T Consensus       166 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~  243 (346)
T 1ua2_A          166 NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD--SDLDQLTRIFETLGTPTEEQWPDMCSL  243 (346)
T ss_dssp             CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCTTTSSSTTSS
T ss_pred             cccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHcCCCChhhhhhhccC
Confidence            11         122233222 223678899999999999999999998432  22332222221100     00000   


Q ss_pred             ---cCC-CCCCCC-----HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 ---VDP-TLSSFD-----EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ---~~~-~~~~~~-----~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                         +.. .....+     ...+..+.+++.+||+.||++|||+.|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  291 (346)
T 1ua2_A          244 PDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  291 (346)
T ss_dssp             TTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             cccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence               000 000111     223467999999999999999999999986

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=5.7e-37  Score=312.17  Aligned_cols=248  Identities=17%  Similarity=0.320  Sum_probs=182.9

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||.||+|+..+  .+++|.+.......   ...+.|.+|++++++++|+||+++++++....  ..++|+
T Consensus        36 ~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~iv~  108 (319)
T 2y4i_B           36 EIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNE---DQLKAFKREVMAYRQTRHENVVLFMGACMSPP--HLAIIT  108 (319)
T ss_dssp             ECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCC---CCCCCCCTTGGGGTTCCCTTBCCCCEEEECSS--CEEEEC
T ss_pred             EEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCH---HHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC--ceEEEe
Confidence            346789999999999999754  48898886543221   12345778999999999999999999999877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh--
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  458 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~--  458 (592)
                      ||+++++|.+++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++ ++.+||+|||+++.....  
T Consensus       109 e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~~--i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~  184 (319)
T 2y4i_B          109 SLCKGRTLYSVVRD-AKIVLDVNKTRQIAQEIVKGMGYLHAKG--ILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQA  184 (319)
T ss_dssp             BCCCSEEHHHHTTS-SCCCCCSHHHHHHHHHHHHHHHHHHHTT--CCCCCCCSTTEEEC---CCEECCCSCCC-------
T ss_pred             ecccCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccCCChhhEEEe-CCCEEEeecCCccccccccc
Confidence            99999999999964 3346899999999999999999999998  99999999999998 679999999997754311  


Q ss_pred             ------------hhhhcccccCC---------CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC
Q 007711          459 ------------EMAATSKKLSS---------APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL  517 (592)
Q Consensus       459 ------------~~~~~~~~~~~---------~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~  517 (592)
                                  ...+.+|+...         ...++.++||||||+++|||+||+.||..  ....+.......+... 
T Consensus       185 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~--~~~~~~~~~~~~~~~~-  261 (319)
T 2y4i_B          185 GRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKT--QPAEAIIWQMGTGMKP-  261 (319)
T ss_dssp             ---CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSS--CCHHHHHHHHHTTCCC-
T ss_pred             cccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHhccCCCC-
Confidence                        11222333221         12367889999999999999999999943  3333333333322111 


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCC
Q 007711          518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  570 (592)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~  570 (592)
                       ....       ...+..+.+++.+||+.||++||++.++++.|+++......
T Consensus       262 -~~~~-------~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~~  306 (319)
T 2y4i_B          262 -NLSQ-------IGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNRR  306 (319)
T ss_dssp             -CCCC-------SSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC------
T ss_pred             -CCCc-------CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhcc
Confidence             1111       11223588999999999999999999999999998765433

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=4.3e-36  Score=303.23  Aligned_cols=239  Identities=16%  Similarity=0.216  Sum_probs=184.1

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|+.. ++..+|+|.+......     ..+.|.+|++++++++||||+++++++...+  ..++|
T Consensus        22 ~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   94 (302)
T 2j7t_A           22 EIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEE-----ELEDYIVEIEILATCDHPYIVKLLGAYYHDG--KLWIM   94 (302)
T ss_dssp             EEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----C-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECC---CEEEE
T ss_pred             eecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHH-----HHHHHHHHHHHHhcCCCCCEeeeeeeeeeCC--eEEEE
Confidence            34578999999999999975 5889999988654322     2567899999999999999999999998876  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||++.......
T Consensus        95 ~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  171 (302)
T 2j7t_A           95 IEFCPGGAVDAIMLEL-DRGLTEPQIQVVCRQMLEALNFLHSKR--IIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTL  171 (302)
T ss_dssp             EECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHH
T ss_pred             EEeCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHhcCC--cccCCCCHHHEEECCCCCEEEEECCCCccccccc
Confidence            9999999999888642 356899999999999999999999998  9999999999999999999999999976543221


Q ss_pred             ---------hhhcccccC-----CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          460 ---------MAATSKKLS-----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       460 ---------~~~~~~~~~-----~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                               ..+.+|+..     ....++.++||||||+++|||+||+.||..  ....+...........  .      
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~~~--~------  241 (302)
T 2j7t_A          172 QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHE--LNPMRVLLKIAKSDPP--T------  241 (302)
T ss_dssp             HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCCC--C------
T ss_pred             cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCcc--CCHHHHHHHHhccCCc--c------
Confidence                     122233322     233467899999999999999999999943  2333333333322111  0      


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...+...+..+.+++.+||+.||++|||+.++++
T Consensus       242 ~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          242 LLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             CSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             cCCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            0112334467899999999999999999998865

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=5.2e-36  Score=324.05  Aligned_cols=235  Identities=20%  Similarity=0.249  Sum_probs=185.0

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|+||.||+|+.. +|+.||+|++.......  ....+.+..|++++++++||||+++++++....  ..++|||
T Consensus       190 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~--~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~--~l~lVmE  265 (543)
T 3c4z_A          190 FRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKK--RKGYQGAMVEKKILAKVHSRFIVSLAYAFETKT--DLCLVMT  265 (543)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEEEC
T ss_pred             EEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhh--hHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCC--EEEEEEE
Confidence            367999999999999975 68999999986543211  122467889999999999999999999998876  6899999


Q ss_pred             eCCCCCchhhccccC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          382 YAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~--~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |+++|+|.+++....  ...+++.....++.+|+.||+|||+.+  |+||||||+|||++.++.+||+|||+++......
T Consensus       266 ~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g--IvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~  343 (543)
T 3c4z_A          266 IMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN--IIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQ  343 (543)
T ss_dssp             CCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred             eccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcC--CcccCCChHHEEEeCCCCEEEeecceeeeccCCC
Confidence            999999999886432  456899999999999999999999999  9999999999999999999999999998654221


Q ss_pred             ---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC--ChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          460 ---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       460 ---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                               ..+.+|+......++.++|||||||++|||+||+.||.....  ...++..........           +
T Consensus       344 ~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~-----------~  412 (543)
T 3c4z_A          344 TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVT-----------Y  412 (543)
T ss_dssp             CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCC-----------C
T ss_pred             cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccC-----------C
Confidence                     112233333333478899999999999999999999965432  334444444332111           1


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTM  554 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~  554 (592)
                      +...+..+.+++.+||+.||++||++
T Consensus       413 p~~~s~~~~~li~~lL~~dP~~R~~~  438 (543)
T 3c4z_A          413 PDKFSPASKDFCEALLQKDPEKRLGF  438 (543)
T ss_dssp             CTTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred             CcccCHHHHHHHHHhccCCHhHCCCC
Confidence            22334578999999999999999976

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=8.8e-36  Score=309.39  Aligned_cols=244  Identities=23%  Similarity=0.344  Sum_probs=187.0

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCc---hhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcc
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWP---KNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~---~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~  375 (592)
                      .+.+.||+|+||.||+|+.. +|..||||++.........   ....+.+.+|++++.++ +||||+++++++....  .
T Consensus        97 ~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~--~  174 (365)
T 2y7j_A           97 DPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSS--F  174 (365)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSS--E
T ss_pred             ccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCC--E
Confidence            34588999999999999975 6999999998754422111   12356788999999999 7999999999998876  6


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+||++++++.+||+|||+++..
T Consensus       175 ~~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~g--i~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~  250 (365)
T 2y7j_A          175 MFLVFDLMRKGELFDYLTEK--VALSEKETRSIMRSLLEAVSFLHANN--IVHRDLKPENILLDDNMQIRLSDFGFSCHL  250 (365)
T ss_dssp             EEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEECCCCCEEEEecCccccc
Confidence            79999999999999998643  46899999999999999999999998  999999999999999999999999998765


Q ss_pred             hhhh--------hhhcccccC------CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCcccc
Q 007711          456 AMAE--------MAATSKKLS------SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  521 (592)
Q Consensus       456 ~~~~--------~~~~~~~~~------~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (592)
                      ....        ..+.+|+..      ..+.++.++|||||||++|||+||+.||..  ............+......  
T Consensus       251 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~--~~~~~~~~~i~~~~~~~~~--  326 (365)
T 2y7j_A          251 EPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWH--RRQILMLRMIMEGQYQFSS--  326 (365)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCCH--
T ss_pred             CCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCCCCC--
Confidence            4221        122233321      123467899999999999999999999943  2333333333322111100  


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       +..    ...+..+.+++.+||+.||++||++.|+++
T Consensus       327 -~~~----~~~~~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          327 -PEW----DDRSSTVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             -HHH----SSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             -ccc----ccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence             000    112356889999999999999999999975

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=4.8e-36  Score=301.75  Aligned_cols=237  Identities=22%  Similarity=0.280  Sum_probs=181.2

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      ..||+|+||.||+|.. .++..||||.+.....     ...+.+.+|+.+++.++||||+++++++...+  ..++||||
T Consensus        28 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~  100 (295)
T 2clq_A           28 VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDS-----RYSQPLHEEIALHKHLKHKNIVQYLGSFSENG--FIKIFMEQ  100 (295)
T ss_dssp             CEEEECSSSEEEEEEETTTCCEEEEEEEECCCC--------HHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEEEEC
T ss_pred             EEEeecCcEEEEEEEECCCCeEEEEEEccCCch-----HHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCC--cEEEEEEe
Confidence            4799999999999996 4688999998865432     23567999999999999999999999998877  67999999


Q ss_pred             CCCCCchhhccccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC-CCceEEecCCcchhhhhhhh
Q 007711          383 APNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       383 ~~~gsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~-~~~~ki~DfGla~~~~~~~~  460 (592)
                      +++|+|.+++.... ...+++..+..++.+++.||+|||+.+  ++||||||+||+++. ++.+||+|||+++.......
T Consensus       101 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~  178 (295)
T 2clq_A          101 VPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ--IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP  178 (295)
T ss_dssp             CSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEETTTCCEEECCTTTCEESCC---
T ss_pred             CCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCC--EEccCCChhhEEEECCCCCEEEeecccccccCCCCC
Confidence            99999999987542 335678889999999999999999998  999999999999997 89999999999876532111


Q ss_pred             ---hhcccccCCCCC--------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          461 ---AATSKKLSSAPS--------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       461 ---~~~~~~~~~~~~--------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                         .......+.+||        ++.++||||||+++|||+||+.||.................       ..+   ..+
T Consensus       179 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~-------~~~---~~~  248 (295)
T 2clq_A          179 CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFK-------VHP---EIP  248 (295)
T ss_dssp             --CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHC-------CCC---CCC
T ss_pred             cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhcccc-------ccc---ccc
Confidence               011112233333        67889999999999999999999954332222221111111       011   122


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...+..+.+++.+||+.||++||++.|+++
T Consensus       249 ~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          249 ESMSAEAKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             TTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             ccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            334457899999999999999999999875

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=6.3e-36  Score=322.60  Aligned_cols=249  Identities=20%  Similarity=0.266  Sum_probs=192.8

Q ss_pred             HhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      .+.+.+.||+|+||.||+|+.. +|..||||++.......  ....+.+.+|++++++++||||+++++++....  ..+
T Consensus        27 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~  102 (484)
T 3nyv_A           27 RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQ--KTDKESLLREVQLLKQLDHPNIMKLYEFFEDKG--YFY  102 (484)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCB--SSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEE
T ss_pred             ceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhccc--chHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--EEE
Confidence            4556689999999999999965 78999999986543322  223567999999999999999999999998877  679


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE---cCCCceEEecCCcchh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL---TEDYAAKLSDLSFWNE  454 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl---~~~~~~ki~DfGla~~  454 (592)
                      +|+||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||+   +.++.+||+|||+++.
T Consensus       103 lv~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  178 (484)
T 3nyv_A          103 LVGEVYTGGELFDEIIS--RKRFSEVDAARIIRQVLSGITYMHKNK--IVHRDLKPENLLLESKSKDANIRIIDFGLSTH  178 (484)
T ss_dssp             EEECCCCSCBHHHHHHT--CSCCBHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred             EEEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence            99999999999998863  356899999999999999999999999  9999999999999   5678999999999876


Q ss_pred             hhhhhh--hhcccccCCCC-----CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          455 IAMAEM--AATSKKLSSAP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       455 ~~~~~~--~~~~~~~~~~~-----~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      ......  ....+..+++|     .++.++|||||||++|||+||+.||.  .....+.......+.....   .+    
T Consensus       179 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~--~~~~~~~~~~i~~~~~~~~---~~----  249 (484)
T 3nyv_A          179 FEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFN--GANEYDILKKVEKGKYTFE---LP----  249 (484)
T ss_dssp             BCCCCSHHHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCCCC---SG----
T ss_pred             cccccccccCCCCccccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHHcCCCCCC---Cc----
Confidence            532211  11112233343     37889999999999999999999994  3334444444443321111   00    


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHhh
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREI  564 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~--~L~~i  564 (592)
                      .....+..+.+++.+||+.||.+|||+.|+++  .++..
T Consensus       250 ~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~~~~~~  288 (484)
T 3nyv_A          250 QWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTY  288 (484)
T ss_dssp             GGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHHH
T ss_pred             ccccCCHHHHHHHHHHCCCChhHCcCHHHHhhChhhccc
Confidence            11233467899999999999999999999986  34444

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=3.1e-37  Score=321.95  Aligned_cols=236  Identities=12%  Similarity=0.185  Sum_probs=174.0

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHH---HHHhcCCCCceeeee-------EEEec
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKI---DTLSKVNHKNFVNLI-------GFCEE  370 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~---~~l~~l~H~niv~l~-------g~~~~  370 (592)
                      +.+.||+|+||.||+|+. .+|..||||++.......  ....+.|.+|+   +.+++++|||||+++       +++..
T Consensus        77 ~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~  154 (377)
T 3byv_A           77 RGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPP--SNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKD  154 (377)
T ss_dssp             EEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CC--TTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEEC
T ss_pred             EcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccc--hHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhc
Confidence            357899999999999995 568999999987543222  23457899999   555666899999998       66554


Q ss_pred             CCC---------------cceEEEEeeCCCCCchhhccccC-----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeC
Q 007711          371 EEP---------------FTRMMVFEYAPNGTLFEHIHIKE-----SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNY  430 (592)
Q Consensus       371 ~~~---------------~~~~lv~Ey~~~gsL~~~l~~~~-----~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~d  430 (592)
                      .+.               ...++||||+ +|+|.+++....     ...++|..+..|+.|++.||+|||+.+  |+|||
T Consensus       155 ~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrD  231 (377)
T 3byv_A          155 PQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG--LVHTY  231 (377)
T ss_dssp             TTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT--EECSC
T ss_pred             cCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCC--eecCC
Confidence            421               0268999999 689999987421     123446888899999999999999999  99999


Q ss_pred             cCCCCeEEcCCCceEEecCCcchhhhhhh-----hhhcccccCCCC-----------CCCCCCcchhhHHHHHHHHhCCC
Q 007711          431 LNSSAVHLTEDYAAKLSDLSFWNEIAMAE-----MAATSKKLSSAP-----------SASLESNVYNFGVLLFEMVTGRL  494 (592)
Q Consensus       431 Lk~~NiLl~~~~~~ki~DfGla~~~~~~~-----~~~~~~~~~~~~-----------~~s~ksDVwSfGvvl~El~tG~~  494 (592)
                      |||+|||++.++.+||+|||+++......     ..+.+||.....           .++.++|||||||++|||+||+.
T Consensus       232 ikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~  311 (377)
T 3byv_A          232 LRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADL  311 (377)
T ss_dssp             CCGGGEEECTTCCEEECCGGGCEETTCEEECCCCTTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCHHHEEEcCCCCEEEEechhheecCCcccCCCCcCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCC
Confidence            99999999999999999999998643211     222333322222           47889999999999999999999


Q ss_pred             cccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          495 PYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       495 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ||.....            ......+.. ..    ...+..+.+++.+||+.||++||++.|+++
T Consensus       312 Pf~~~~~------------~~~~~~~~~-~~----~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  359 (377)
T 3byv_A          312 PITKDAA------------LGGSEWIFR-SC----KNIPQPVRALLEGFLRYPKEDRLLPLQAME  359 (377)
T ss_dssp             CC------------------CCSGGGGS-SC----CCCCHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred             CCccccc------------ccchhhhhh-hc----cCCCHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence            9943221            011111111 11    122356889999999999999999999985

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.4e-37  Score=321.80  Aligned_cols=241  Identities=19%  Similarity=0.220  Sum_probs=182.2

Q ss_pred             hcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|+||.||+++.. +|+.||+|++.......  ....+.+.+|++++..++||||+++++++.+.+  ..++|||
T Consensus        66 ~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~--~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~--~~~lVmE  141 (412)
T 2vd5_A           66 LKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLK--RGEVSCFREERDVLVNGDRRWITQLHFAFQDEN--YLYLVME  141 (412)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH--HGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSS--EEEEEEC
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhh--HHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC--EEEEEEc
Confidence            478999999999999974 68999999986432111  112345889999999999999999999998877  7899999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh--
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  459 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~--  459 (592)
                      |+++|+|.+++... ...+++..+..++.+++.||+|||+++  |+||||||+|||++.++.+||+|||+++......  
T Consensus       142 ~~~gg~L~~~l~~~-~~~l~~~~~~~~~~qi~~aL~~LH~~g--iiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~  218 (412)
T 2vd5_A          142 YYVGGDLLTLLSKF-GERIPAEMARFYLAEIVMAIDSVHRLG--YVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTV  218 (412)
T ss_dssp             CCCSCBHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCE
T ss_pred             CCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecccCHHHeeecCCCCEEEeechhheeccCCCcc
Confidence            99999999999642 346899999999999999999999999  9999999999999999999999999997653221  


Q ss_pred             --------hhhcccccCC-------CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          460 --------MAATSKKLSS-------APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       460 --------~~~~~~~~~~-------~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                              ..+.+||...       ...++.++|||||||++|||+||+.||..  .+..+............   ..+ 
T Consensus       219 ~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~--~~~~~~~~~i~~~~~~~---~~p-  292 (412)
T 2vd5_A          219 RSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYA--DSTAETYGKIVHYKEHL---SLP-  292 (412)
T ss_dssp             ECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTHHHHC---CCC-
T ss_pred             ccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCC--CCHHHHHHHHHhcccCc---CCC-
Confidence                    1122222211       22368899999999999999999999953  33333333333211000   001 


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCC---CCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKR---PTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~R---Ps~~ev~~  559 (592)
                        ..+...+.++.+++.+||. +|.+|   |+++|+++
T Consensus       293 --~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          293 --LVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             ------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred             --ccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence              1112234578999999998 99998   58888864

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=7.5e-36  Score=301.89  Aligned_cols=242  Identities=20%  Similarity=0.257  Sum_probs=184.4

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||++.. .++..+|+|++....... .....+.+.+|++++++++|+||+++++++........++|
T Consensus         8 ~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv   86 (305)
T 2wtk_C            8 LMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRR-IPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMV   86 (305)
T ss_dssp             CCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHH-STTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEE
T ss_pred             eEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccc-cchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEE
Confidence            3467899999999999996 468899999886543211 11245779999999999999999999999864433367999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      |||+++| |.+++.......+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++..... 
T Consensus        87 ~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~--i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~  163 (305)
T 2wtk_C           87 MEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQG--IVHKDIKPGNLLLTTGGTLKISALGVAEALHPFA  163 (305)
T ss_dssp             EECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCCTTCEECCTTC
T ss_pred             ehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCcccEEEcCCCcEEeeccccccccCccc
Confidence            9999876 777776555667999999999999999999999998  999999999999999999999999998765321 


Q ss_pred             ----------hhhhcccccCCCC--CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          459 ----------EMAATSKKLSSAP--SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       459 ----------~~~~~~~~~~~~~--~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                                ...+.+++.....  ..+.++||||||+++|||+||+.||..  ....+...........          
T Consensus       164 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~i~~~~~~----------  231 (305)
T 2wtk_C          164 ADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEG--DNIYKLFENIGKGSYA----------  231 (305)
T ss_dssp             SSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHCCCC----------
T ss_pred             cccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHhcCCCC----------
Confidence                      1112222222211  136689999999999999999999943  3344444333332111          


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       .+..++..+.+++.+||+.||++||+++|+++
T Consensus       232 -~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  263 (305)
T 2wtk_C          232 -IPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQ  263 (305)
T ss_dssp             -CCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             -CCCccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence             12233457889999999999999999999986

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=9.6e-37  Score=311.52  Aligned_cols=246  Identities=16%  Similarity=0.221  Sum_probs=180.2

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. ++..||+|++.......    ....+.+|++++++++||||+++++++...+  ..++||
T Consensus         6 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   79 (324)
T 3mtl_A            6 KLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEG----APCTAIREVSLLKDLKHANIVTLHDIIHTEK--SLTLVF   79 (324)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECC----------CCCCCCCHHHHSCCCCTTBCCEEEEEECSS--CEEEEE
T ss_pred             EEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccc----cchhHHHHHHHHHhcCCCCCCeeeeEEeeCC--EEEEEe
Confidence            4578999999999999975 68899999886433221    1123557999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||++ |+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...... 
T Consensus        80 e~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~  155 (324)
T 3mtl_A           80 EYLD-KDLKQYLDD-CGNIINMHNVKLFLFQLLRGLAYCHRQK--VLHRDLKPQNLLINERGELKLADFGLARAKSIPTK  155 (324)
T ss_dssp             ECCS-EEHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EEESSCCGGGEEECTTCCEEECSSSEEECC-----
T ss_pred             cccc-cCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--ccCCCcCHHHEEECCCCCEEEccCcccccccCCcc
Confidence            9997 589888864 3456899999999999999999999999  9999999999999999999999999987653221 


Q ss_pred             --------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-----CCccccC---
Q 007711          460 --------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----PLQQFVD---  522 (592)
Q Consensus       460 --------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---  522 (592)
                              ..+.+|+... ...++.++|||||||++|||+||+.||...  ...+..........     .+.....   
T Consensus       156 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  233 (324)
T 3mtl_A          156 TYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGS--TVEEQLHFIFRILGTPTEETWPGILSNEE  233 (324)
T ss_dssp             -------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGCHH
T ss_pred             ccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCChHhchhhhcchh
Confidence                    1233344332 245788999999999999999999999532  22322222211100     0000000   


Q ss_pred             ------CCCC-----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          523 ------PTLS-----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       523 ------~~~~-----~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                            +...     .........+.+++.+||+.||++|||++|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  281 (324)
T 3mtl_A          234 FKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK  281 (324)
T ss_dssp             HHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence                  0000     001123356889999999999999999999986

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=8.9e-36  Score=322.03  Aligned_cols=243  Identities=19%  Similarity=0.266  Sum_probs=183.7

Q ss_pred             HhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      .+.+.+.||+|+||.||+|+.. ++..+|+|++.......   .....+.+|+++++.++||||+++++++....  ..+
T Consensus        38 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~  112 (494)
T 3lij_A           38 MYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVST---SSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKR--NYY  112 (494)
T ss_dssp             HEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC--------CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEE
T ss_pred             CeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCc---hHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC--EEE
Confidence            3455688999999999999975 68899999987543221   12467899999999999999999999998877  679


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC---CCceEEecCCcchh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNE  454 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~---~~~~ki~DfGla~~  454 (592)
                      +|||||++|+|.+++...  ..+++..+..|+.+++.||+|||+.+  |+||||||+|||++.   ++.+||+|||+++.
T Consensus       113 lv~e~~~~g~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~  188 (494)
T 3lij_A          113 LVMECYKGGELFDEIIHR--MKFNEVDAAVIIKQVLSGVTYLHKHN--IVHRDLKPENLLLESKEKDALIKIVDFGLSAV  188 (494)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred             EEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCChhhEEEeCCCCCCcEEEEECCCCeE
Confidence            999999999999888643  45899999999999999999999999  999999999999976   45599999999876


Q ss_pred             hhhhhhh--hcccccCCCC-----CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          455 IAMAEMA--ATSKKLSSAP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       455 ~~~~~~~--~~~~~~~~~~-----~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      .......  ...+..+++|     .++.++|||||||++|||++|+.||.  .....+.......+.....   .+..  
T Consensus       189 ~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~--~~~~~~~~~~i~~~~~~~~---~~~~--  261 (494)
T 3lij_A          189 FENQKKMKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFG--GQTDQEILRKVEKGKYTFD---SPEW--  261 (494)
T ss_dssp             CBTTBCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHTCCCCC---SGGG--
T ss_pred             CCCCccccccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHhCCCCCC---chhc--
Confidence            5432210  1112233333     37889999999999999999999994  3344444444444322211   1111  


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        ...+..+.+++.+||+.||.+|||+.|+++
T Consensus       262 --~~~s~~~~~li~~~L~~dp~~R~s~~e~l~  291 (494)
T 3lij_A          262 --KNVSEGAKDLIKQMLQFDSQRRISAQQALE  291 (494)
T ss_dssp             --TTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             --ccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence              123356889999999999999999999885

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=3.9e-36  Score=311.58  Aligned_cols=249  Identities=15%  Similarity=0.229  Sum_probs=185.2

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|... ++..||+|++....    .....+.+.+|++++++++||||+++++++...+  ..++|
T Consensus        36 ~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv  109 (360)
T 3eqc_A           36 EKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI----KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--EISIC  109 (360)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC----CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             eeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc----CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECC--EEEEE
Confidence            34578999999999999975 68899999886532    2345678999999999999999999999998877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~-~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |||+++|+|.+++...  ..+++..+..++.+++.||+|||+. +  |+||||||+|||++.++.+||+|||+++.....
T Consensus       110 ~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~~--i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  185 (360)
T 3eqc_A          110 MEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  185 (360)
T ss_dssp             ECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHHC--CCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH
T ss_pred             EECCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHhCC--EEcCCccHHHEEECCCCCEEEEECCCCcccccc
Confidence            9999999999998643  4588999999999999999999985 7  999999999999999999999999999766432


Q ss_pred             hh-------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCC-------------CCCc
Q 007711          459 EM-------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV-------------QPLQ  518 (592)
Q Consensus       459 ~~-------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~-------------~~~~  518 (592)
                      ..       .+.+|+......++.++|||||||++|||+||+.||..................             ....
T Consensus       186 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (360)
T 3eqc_A          186 MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLN  265 (360)
T ss_dssp             C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC----------------------
T ss_pred             cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCccc
Confidence            21       122333333344788999999999999999999999543211111000000000             0000


Q ss_pred             -----------------cccCCCCCC-CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 -----------------QFVDPTLSS-FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 -----------------~~~~~~~~~-~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                       .+....... .....+..+.+++.+||+.||++|||++|+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  324 (360)
T 3eqc_A          266 KFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV  324 (360)
T ss_dssp             --------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             ccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence                             000000000 01123457899999999999999999999976

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=1.2e-35  Score=320.43  Aligned_cols=242  Identities=20%  Similarity=0.264  Sum_probs=189.9

Q ss_pred             HhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      .+.+.+.||+|+||.||+|+.. ++..||||++.......   .....+.+|++++++++||||+++++++....  ..+
T Consensus        23 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~   97 (486)
T 3mwu_A           23 RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN---KDTSTILREVELLKKLDHPNIMKLFEILEDSS--SFY   97 (486)
T ss_dssp             HEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBC---SCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEE
T ss_pred             ceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccc---hHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCC--EEE
Confidence            4556789999999999999964 68899999986543222   12467899999999999999999999998877  679


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc---CCCceEEecCCcchh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT---EDYAAKLSDLSFWNE  454 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~---~~~~~ki~DfGla~~  454 (592)
                      +||||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++   .++.+||+|||+++.
T Consensus        98 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  173 (486)
T 3mwu_A           98 IVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKHN--IVHRDLKPENILLESKEKDCDIKIIDFGLSTC  173 (486)
T ss_dssp             EEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEESSSSTTCCEEECSCSCTTT
T ss_pred             EEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCchHHEEEecCCCCCCEEEEECCcCeE
Confidence            999999999999988643  46899999999999999999999999  99999999999995   456799999999986


Q ss_pred             hhhh--------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          455 IAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       455 ~~~~--------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      ....        ...+.+|+.... .++.++|||||||++|||+||+.||..  ....+.......+......   +   
T Consensus       174 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~--~~~~~~~~~i~~~~~~~~~---~---  244 (486)
T 3mwu_A          174 FQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYG--KNEYDILKRVETGKYAFDL---P---  244 (486)
T ss_dssp             BCCC----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCSCS---G---
T ss_pred             CCCCCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCCC---c---
Confidence            5322        222333443332 378899999999999999999999943  3344444444333221110   0   


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       .....+..+.+++.+||+.||.+|||+.|+++
T Consensus       245 -~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~  276 (486)
T 3mwu_A          245 -QWRTISDDAKDLIRKMLTFHPSLRITATQCLE  276 (486)
T ss_dssp             -GGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             -ccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence             11233457899999999999999999999987

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=8e-36  Score=319.07  Aligned_cols=246  Identities=17%  Similarity=0.205  Sum_probs=178.8

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cce
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~~  376 (592)
                      +.+.||+|+||.||+|.. .++..||||++......   ....+.+.+|+++++.++||||+++++++.....    ...
T Consensus        66 ~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~  142 (464)
T 3ttj_A           66 NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQN---QTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDV  142 (464)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGS---HHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEE
T ss_pred             EEEEeecCCCeEEEEEEECCCCCEEEEEEECccccC---hHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeE
Confidence            457899999999999985 46889999998654221   3446778899999999999999999999975431    246


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|||||++ +|.+.+.    ..+++..+..++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       143 ~lv~E~~~~-~l~~~~~----~~l~~~~~~~~~~qil~aL~~lH~~~--iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~  215 (464)
T 3ttj_A          143 YLVMELMDA-NLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDCTLKILDFGLARTAG  215 (464)
T ss_dssp             EEEEECCSE-EHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEECCCCCC----
T ss_pred             EEEEeCCCC-CHHHHHh----hcCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChHhEEEeCCCCEEEEEEEeeeecC
Confidence            999999976 4666654    24899999999999999999999999  9999999999999999999999999998764


Q ss_pred             hhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-------------
Q 007711          457 MAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-------------  515 (592)
Q Consensus       457 ~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-------------  515 (592)
                      ...        ..+.+|+......++.++|||||||++|||++|+.||...  +..+..........             
T Consensus       216 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~--~~~~~~~~i~~~lg~p~~~~~~~~~~~  293 (464)
T 3ttj_A          216 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR--DYIDQWNKVIEQLGTPCPEFMKKLQPT  293 (464)
T ss_dssp             -CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCSCCHHHHTTSCHH
T ss_pred             CCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcCCCCHHHHHHcchh
Confidence            321        1223333333445789999999999999999999999532  22222221111000             


Q ss_pred             ---------CC-----ccccCCCCCC----CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          516 ---------PL-----QQFVDPTLSS----FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       516 ---------~~-----~~~~~~~~~~----~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                               ..     ..........    ........+.+++.+||+.||++|||++|+++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  355 (464)
T 3ttj_A          294 VRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ  355 (464)
T ss_dssp             HHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             hhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                     00     0000000000    01112567899999999999999999999886

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=6.2e-36  Score=307.47  Aligned_cols=238  Identities=18%  Similarity=0.278  Sum_probs=184.1

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.+.||+|+||.||++... ++..||+|++.....         .+.+|++++.++ +||||+++++++.+..  ..+
T Consensus        24 y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---------~~~~E~~~l~~~~~hp~iv~~~~~~~~~~--~~~   92 (342)
T 2qr7_A           24 YEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR---------DPTEEIEILLRYGQHPNIITLKDVYDDGK--YVY   92 (342)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC---------CCHHHHHHHHHHTTSTTBCCEEEEEECSS--EEE
T ss_pred             EEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC---------ChHHHHHHHHHhcCCCCcCeEEEEEEcCC--EEE
Confidence            445688999999999999965 588999999864332         234688888887 7999999999998877  779


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC----CceEEecCCcch
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED----YAAKLSDLSFWN  453 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~----~~~ki~DfGla~  453 (592)
                      +||||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||+.++    +.+||+|||+++
T Consensus        93 lv~E~~~gg~L~~~i~~--~~~~~~~~~~~~~~qi~~al~~lH~~g--ivHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~  168 (342)
T 2qr7_A           93 VVTELMKGGELLDKILR--QKFFSEREASAVLFTITKTVEYLHAQG--VVHRDLKPSNILYVDESGNPESIRICDFGFAK  168 (342)
T ss_dssp             EEECCCCSCBHHHHHHT--CTTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEESSSSCSGGGEEECCCTTCE
T ss_pred             EEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--cEeccCCHHHEEEecCCCCcCeEEEEECCCcc
Confidence            99999999999998863  356899999999999999999999999  9999999999998543    359999999998


Q ss_pred             hhhhhhh---hhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCC-CChHHHHHHHhcCCCCCccccCC
Q 007711          454 EIAMAEM---AATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       454 ~~~~~~~---~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      .......   .......+.+||      ++.++|||||||++|||++|+.||.... ....+.......+......    
T Consensus       169 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~----  244 (342)
T 2qr7_A          169 QLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSG----  244 (342)
T ss_dssp             ECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCS----
T ss_pred             cCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCc----
Confidence            6543221   111123455665      5778999999999999999999996433 3344444444433221111    


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                         ......+..+.+++.+||+.||++||++.|+++
T Consensus       245 ---~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~  277 (342)
T 2qr7_A          245 ---GYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR  277 (342)
T ss_dssp             ---TTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             ---cccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence               112233457899999999999999999999876

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=1.3e-35  Score=300.10  Aligned_cols=236  Identities=17%  Similarity=0.256  Sum_probs=186.8

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+.||+|+||.||+|.. .++..||+|.+......    ...+.+.+|+.++++++||||+++++++....  ..++||
T Consensus        26 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   99 (303)
T 3a7i_A           26 KLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE----DEIEDIQQEITVLSQCDSPYVTKYYGSYLKDT--KLWIIM   99 (303)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCS----TTHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             HhhhhcccCCeEEEEEEECCCCcEEEEEEecccccH----HHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC--eEEEEE
Confidence            457899999999999986 46889999988654322    23567999999999999999999999998876  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      ||+++++|.+++..   ..+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++...... 
T Consensus       100 e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~  174 (303)
T 3a7i_A          100 EYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSEK--KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI  174 (303)
T ss_dssp             ECCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC
T ss_pred             EeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCChheEEECCCCCEEEeecccceecCcccc
Confidence            99999999999853   46899999999999999999999998  9999999999999999999999999987653221 


Q ss_pred             --------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          460 --------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       460 --------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                              ..+.+|+......++.++||||||+++|||+||+.||..  ....+..........       +   ..+..
T Consensus       175 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~~-------~---~~~~~  242 (303)
T 3a7i_A          175 KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSE--LHPMKVLFLIPKNNP-------P---TLEGN  242 (303)
T ss_dssp             CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCC-------C---CCCSS
T ss_pred             ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCC--cCHHHHHHHhhcCCC-------C---CCccc
Confidence                    122333333344568899999999999999999999943  223332222222111       1   11222


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAAI  560 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~  560 (592)
                      .+..+.+++.+||+.||++||++.|+++.
T Consensus       243 ~~~~l~~li~~~l~~dp~~Rps~~~ll~~  271 (303)
T 3a7i_A          243 YSKPLKEFVEACLNKEPSFRPTAKELLKH  271 (303)
T ss_dssp             CCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred             cCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence            33568999999999999999999999873

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=1e-35  Score=314.66  Aligned_cols=245  Identities=19%  Similarity=0.251  Sum_probs=178.6

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCC---chhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW---PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~---~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.+.||+|+||.||+|... ++..||||++........   .......+.+|++++++++||||+++++++...   .
T Consensus       137 y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~---~  213 (419)
T 3i6u_A          137 YIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE---D  213 (419)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESS---E
T ss_pred             EEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecC---c
Confidence            445688999999999999864 578999999875432211   111233588999999999999999999998654   4


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC---CceEEecCCcc
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED---YAAKLSDLSFW  452 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~---~~~ki~DfGla  452 (592)
                      .++||||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.+   +.+||+|||++
T Consensus       214 ~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~--ivHrDlkp~NIll~~~~~~~~~kl~DFG~a  289 (419)
T 3i6u_A          214 YYIVLELMEGGELFDKVVG--NKRLKEATCKLYFYQMLLAVQYLHENG--IIHRDLKPENVLLSSQEEDCLIKITDFGHS  289 (419)
T ss_dssp             EEEEEECCTTCBGGGGTSS--SCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEESSSSSSCCEEECCSSTT
T ss_pred             eEEEEEcCCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCChHhEEEecCCCcceEEEeecccc
Confidence            6899999999999998863  356899999999999999999999998  9999999999999754   45999999999


Q ss_pred             hhhhhhhh--hhcccccCCCCC---------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCcccc
Q 007711          453 NEIAMAEM--AATSKKLSSAPS---------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  521 (592)
Q Consensus       453 ~~~~~~~~--~~~~~~~~~~~~---------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (592)
                      +.......  ....+..+++||         ++.++|||||||++|||+||+.||....... ........+.....   
T Consensus       290 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~-~~~~~i~~~~~~~~---  365 (419)
T 3i6u_A          290 KILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV-SLKDQITSGKYNFI---  365 (419)
T ss_dssp             TSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSC-CHHHHHHTTCCCCC---
T ss_pred             eecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchH-HHHHHHhcCCCCCC---
Confidence            87643221  111123344444         4568999999999999999999995432211 11111111111100   


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                          .......+..+.+++.+||+.||++||++.|+++
T Consensus       366 ----~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  399 (419)
T 3i6u_A          366 ----PEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  399 (419)
T ss_dssp             ----HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ----chhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence                0000123457899999999999999999999876

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=3.2e-36  Score=308.52  Aligned_cols=247  Identities=20%  Similarity=0.274  Sum_probs=181.7

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|+.. +|..||||++.....   .....+.+.+|++++++++||||+++++++...+  ..++||
T Consensus        29 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~  103 (331)
T 4aaa_A           29 NLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDD---DKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKK--RWYLVF  103 (331)
T ss_dssp             EEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSS---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             eeeEEeecCCEEEEEEEECCCCceEEEEEEecCCC---chHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCC--EEEEEE
Confidence            4578999999999999975 488999998854332   2345667889999999999999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++++|.+++.  ....+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++.......
T Consensus       104 e~~~~~~l~~~~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  179 (331)
T 4aaa_A          104 EFVDHTILDDLEL--FPNGLDYQVVQKYLFQIINGIGFCHSHN--IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE  179 (331)
T ss_dssp             ECCSEEHHHHHHH--STTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred             ecCCcchHHHHHh--hccCCCHHHHHHHHHHHHHHHHHHHHCC--EEccCcChheEEEcCCCcEEEEeCCCceeecCCcc
Confidence            9999999888764  2346899999999999999999999998  99999999999999999999999999976543221


Q ss_pred             ---------hhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhc--------------CCCC
Q 007711          461 ---------AATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS--------------GVQP  516 (592)
Q Consensus       461 ---------~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~--------------~~~~  516 (592)
                               .+.+|+.... ..++.++|||||||++|||+||+.||....  ..+.......              ....
T Consensus       180 ~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (331)
T 4aaa_A          180 VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDS--DIDQLYHIMMCLGNLIPRHQELFNKNPV  257 (331)
T ss_dssp             ----CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCSCCHHHHHHHHHCGG
T ss_pred             ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCC--cHHHHHHHHHHhCCCChhhhhHhhhccc
Confidence                     1222332222 246888999999999999999999995332  2221111110              0000


Q ss_pred             CccccCCCCCC------CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          517 LQQFVDPTLSS------FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       517 ~~~~~~~~~~~------~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ......+....      .....+..+.+++.+||+.||++|||+.|+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          258 FAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             GTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             cccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            01111111110      01123567999999999999999999998875

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=1.6e-36  Score=304.42  Aligned_cols=241  Identities=15%  Similarity=0.219  Sum_probs=173.5

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|.. .+|..||+|.+.....   .....+.+.++...++.++||||+++++++...+  ..++|
T Consensus        10 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~--~~~lv   84 (290)
T 3fme_A           10 EPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN---SQEQKRLLMDLDISMRTVDCPFTVTFYGALFREG--DVWIC   84 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---C---HHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--SEEEE
T ss_pred             hhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccC---cHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccC--CEEEE
Confidence            3457899999999999996 5788999998864321   1223344555566688899999999999998877  67999


Q ss_pred             EeeCCCCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          380 FEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~~-~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      |||++ |+|.+++..  .....+++..+..++.+++.||+|||+. +  |+||||||+||+++.++.+||+|||+++...
T Consensus        85 ~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~--i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  161 (290)
T 3fme_A           85 MELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKMCDFGISGYLV  161 (290)
T ss_dssp             EECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSC--CCCCCCSGGGCEECTTCCEEBCCC-------
T ss_pred             Eehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC--eecCCCCHHHEEECCCCCEEEeecCCccccc
Confidence            99997 588777753  2456799999999999999999999997 8  9999999999999999999999999997654


Q ss_pred             hhhh--------hhccccc----CCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          457 MAEM--------AATSKKL----SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       457 ~~~~--------~~~~~~~----~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      ....        .+.+|+.    .....++.++||||||+++|||+||+.||.......... .........  ..    
T Consensus       162 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~-~~~~~~~~~--~~----  234 (290)
T 3fme_A          162 DDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQL-KQVVEEPSP--QL----  234 (290)
T ss_dssp             --------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHH-HHHHHSCCC--CC----
T ss_pred             ccccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHH-HHHhccCCC--Cc----
Confidence            3221        1222332    123346788999999999999999999995433332222 222222111  00    


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                         .....+..+.+++.+||+.||++|||+.|+++
T Consensus       235 ---~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          235 ---PADKFSAEFVDFTSQCLKKNSKERPTYPELMQ  266 (290)
T ss_dssp             ---CTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             ---ccccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence               01223457899999999999999999999976

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=1.9e-36  Score=305.73  Aligned_cols=246  Identities=20%  Similarity=0.287  Sum_probs=169.8

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||.||+|.. .++..||||.+......    ...+++.+|++++++++||||+++++++...+  ..++|
T Consensus        18 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   91 (303)
T 2vwi_A           18 ELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQ----TSMDELLKEIQAMSQCHHPNIVSYYTSFVVKD--ELWLV   91 (303)
T ss_dssp             EEEEECC---CCCEEEEEC----CEEEEECCC--------------------CCCCCCCTTBCCEEEEEESSS--CEEEE
T ss_pred             hhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcc----hhHHHHHHHHHHHhhcCCCCEeeEEEEEeecC--CcEEE
Confidence            3458899999999999985 46889999987543321    23467889999999999999999999998877  67999


Q ss_pred             EeeCCCCCchhhcccc------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcch
Q 007711          380 FEYAPNGTLFEHIHIK------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  453 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~  453 (592)
                      |||+++|+|.+++...      ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++
T Consensus        92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~kl~dfg~~~  169 (303)
T 2vwi_A           92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNG--QIHRDVKAGNILLGEDGSVQIADFGVSA  169 (303)
T ss_dssp             EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEECTTCCEEECCCHHHH
T ss_pred             ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCC--CCCCCCChhhEEEcCCCCEEEEeccchh
Confidence            9999999999988631      2456899999999999999999999998  9999999999999999999999999987


Q ss_pred             hhhhhhh--------hhcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-CC
Q 007711          454 EIAMAEM--------AATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-PL  517 (592)
Q Consensus       454 ~~~~~~~--------~~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-~~  517 (592)
                      .......        .......+.+||       ++.++||||||+++|||+||+.||.....  .+.......... ..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~~~~~~~~~~  247 (303)
T 2vwi_A          170 FLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPP--MKVLMLTLQNDPPSL  247 (303)
T ss_dssp             HCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCG--GGHHHHHHTSSCCCT
T ss_pred             eeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCch--hhHHHHHhccCCCcc
Confidence            6532211        011122344443       68899999999999999999999953322  222222222211 11


Q ss_pred             cc-ccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          518 QQ-FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       518 ~~-~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .. ..++   ......+..+.+++.+||+.||++||++.|+++
T Consensus       248 ~~~~~~~---~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          248 ETGVQDK---EMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             TC--------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ccccccc---hhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence            10 0111   111223457889999999999999999999975

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=2.2e-36  Score=336.32  Aligned_cols=246  Identities=20%  Similarity=0.315  Sum_probs=190.8

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  374 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  374 (592)
                      ...+.+.||+|+||.||+|.+..    +..||+|.+....    .....+.|.+|+.++++++||||++++|++.+.   
T Consensus       391 ~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~---  463 (656)
T 2j0j_A          391 RIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT----SDSVREKFLQEALTMRQFDHPHIVKLIGVITEN---  463 (656)
T ss_dssp             GEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT----CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS---
T ss_pred             cEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC----CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC---
Confidence            34456889999999999999742    4568888764322    234567899999999999999999999998543   


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..++||||+++|+|.++++.. ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.
T Consensus       464 ~~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~g--ivHrDikp~NILl~~~~~vkL~DFG~a~~  540 (656)
T 2j0j_A          464 PVWIIMELCTLGELRSFLQVR-KFSLDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVSSNDCVKLGDFGLSRY  540 (656)
T ss_dssp             SCEEEEECCTTCBHHHHHHHT-TTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEEETTEEEECCCCCCCS
T ss_pred             ceEEEEEcCCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccccchHhEEEeCCCCEEEEecCCCee
Confidence            468999999999999999643 346899999999999999999999998  99999999999999999999999999986


Q ss_pred             hhhhhhh----hcccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          455 IAMAEMA----ATSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       455 ~~~~~~~----~~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      .......    ...+..+++|      .++.++|||||||++|||+| |+.||..  ....+.......+..        
T Consensus       541 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~--~~~~~~~~~i~~~~~--------  610 (656)
T 2j0j_A          541 MEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG--VKNNDVIGRIENGER--------  610 (656)
T ss_dssp             CCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHHHHTCC--------
T ss_pred             cCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCC--CCHHHHHHHHHcCCC--------
Confidence            5432211    1111234444      37889999999999999997 9999943  333343333332211        


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                        ...+..++..+.+++.+||+.||++||++.|+++.|++++.
T Consensus       611 --~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~  651 (656)
T 2j0j_A          611 --LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE  651 (656)
T ss_dssp             --CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             --CCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence              11223345679999999999999999999999999999864

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.7e-35  Score=300.62  Aligned_cols=238  Identities=19%  Similarity=0.257  Sum_probs=182.1

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +++.+.||+|+||.||+|... +|..||+|.+....       ..+++.+|++++.+++||||+++++++....  ..++
T Consensus        31 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~l  101 (314)
T 3com_A           31 FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-------DLQEIIKEISIMQQCDSPHVVKYYGSYFKNT--DLWI  101 (314)
T ss_dssp             EEEEEECC----CEEEEEEETTTCCEEEEEEEETTS-------CCHHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEE
T ss_pred             hhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH-------HHHHHHHHHHHHHhCCCCCCccEEEEEEeCC--EEEE
Confidence            345688999999999999975 58899999886432       1356889999999999999999999998876  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||||+++|+|.+++.. ....+++..+..++.+++.||.|||+.+  ++||||||+||+++.++.+||+|||+++.....
T Consensus       102 v~e~~~~~~L~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~  178 (314)
T 3com_A          102 VMEYCGAGSVSDIIRL-RNKTLTEDEIATILQSTLKGLEYLHFMR--KIHRDIKAGNILLNTEGHAKLADFGVAGQLTDT  178 (314)
T ss_dssp             EEECCTTEEHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTCCEEECCCTTCEECBTT
T ss_pred             EeecCCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhCC--CcCCCcCHHHEEECCCCCEEEeecccchhhhhh
Confidence            9999999999999863 2456899999999999999999999999  999999999999999999999999998765322


Q ss_pred             h---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          459 E---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       459 ~---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      .         ..+.+|+......++.++||||||+++|||+||+.||...  ...+..........       +. ...+
T Consensus       179 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~~-------~~-~~~~  248 (314)
T 3com_A          179 MAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADI--HPMRAIFMIPTNPP-------PT-FRKP  248 (314)
T ss_dssp             BSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHSCC-------CC-CSSG
T ss_pred             ccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHhcCCC-------cc-cCCc
Confidence            1         1223333333334688999999999999999999999532  22222222111110       00 0112


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...+..+.+++.+||+.||.+||++.++++
T Consensus       249 ~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          249 ELWSDNFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             GGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             ccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            233467899999999999999999999976

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=4e-36  Score=318.57  Aligned_cols=187  Identities=19%  Similarity=0.225  Sum_probs=153.7

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC------CCCceeeeeEEEecCCC
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV------NHKNFVNLIGFCEEEEP  373 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l------~H~niv~l~g~~~~~~~  373 (592)
                      .+.+.||+|+||.||+|... ++..||||++...      ....+++.+|++++..+      +|+||+++++++.... 
T Consensus       100 ~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~------~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~-  172 (429)
T 3kvw_A          100 EVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE------KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRN-  172 (429)
T ss_dssp             EEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC------HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETT-
T ss_pred             EEEEEcccCccEEEEEEEECCCCcEEEEEEECCc------cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCC-
Confidence            45688999999999999864 5889999988532      23346677888888776      5779999999998877 


Q ss_pred             cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc--eEEecCCc
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA--AKLSDLSF  451 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~--~ki~DfGl  451 (592)
                       ..++||||+. |+|.+++.......+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.  +||+|||+
T Consensus       173 -~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlKp~NILl~~~~~~~vkL~DFG~  248 (429)
T 3kvw_A          173 -HICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNR--IIHCDLKPENILLKQQGRSGIKVIDFGS  248 (429)
T ss_dssp             -EEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHT--EECSCCSGGGEEESSTTSCCEEECCCTT
T ss_pred             -eEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEEccCCCcceEEeeccc
Confidence             6799999996 69999987666667999999999999999999999998  999999999999999887  99999999


Q ss_pred             chhhhhhhh------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccC
Q 007711          452 WNEIAMAEM------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLV  498 (592)
Q Consensus       452 a~~~~~~~~------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~  498 (592)
                      ++.......      .+.+||......++.++|||||||++|||+||+.||..
T Consensus       249 a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~  301 (429)
T 3kvw_A          249 SCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPG  301 (429)
T ss_dssp             CEETTCCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ceecCCcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCC
Confidence            876543221      22333333333478999999999999999999999954

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=2.4e-35  Score=306.88  Aligned_cols=247  Identities=16%  Similarity=0.195  Sum_probs=179.7

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cc
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~  375 (592)
                      .+.+.||+|+||.||+|.. .++..||||++.....   .....+.+.+|+.+++.++||||+++++++.....    ..
T Consensus        28 ~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~  104 (371)
T 2xrw_A           28 QNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ---NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQD  104 (371)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTS---SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCE
T ss_pred             eEeeeeEecCCEEEEEEEECCCCceEEEEEeccccC---ChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccc
Confidence            3457899999999999985 4688999998864322   13445678899999999999999999999976532    14


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||++ |+|.+++.    ..+++..+..++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++..
T Consensus       105 ~~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~  177 (371)
T 2xrw_A          105 VYIVMELMD-ANLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDCTLKILDFGLARTA  177 (371)
T ss_dssp             EEEEEECCS-EEHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTSCEEECCCCC----
T ss_pred             eEEEEEcCC-CCHHHHHh----hccCHHHHHHHHHHHHHHHHHHHHCC--eecccCCHHHEEEcCCCCEEEEEeeccccc
Confidence            689999997 57888775    34889999999999999999999998  999999999999999999999999999876


Q ss_pred             hhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC-c--------
Q 007711          456 AMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL-Q--------  518 (592)
Q Consensus       456 ~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~-~--------  518 (592)
                      ....        ..+.+|+......++.++|||||||++|||+||+.||...  +..+............ .        
T Consensus       178 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~  255 (371)
T 2xrw_A          178 GTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT--DHIDQWNKVIEQLGTPCPEFMKKLQP  255 (371)
T ss_dssp             ------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHC-CCCCCHHHHTTSCH
T ss_pred             ccccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCCHHHHHHhhh
Confidence            4321        1223333333344789999999999999999999999532  2222222222111100 0        


Q ss_pred             ------------------cccC----CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 ------------------QFVD----PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 ------------------~~~~----~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                        ....    +............+.+++.+||+.||++|||++|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  318 (371)
T 2xrw_A          256 TVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ  318 (371)
T ss_dssp             HHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence                              0000    0000001223567999999999999999999999986

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=303.63  Aligned_cols=239  Identities=19%  Similarity=0.285  Sum_probs=182.0

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCC----Ccc
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE----PFT  375 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~----~~~  375 (592)
                      +.+.||+|+||.||+|+. .++..||||++.....      ....+.+|++++.++ +||||+++++++....    ...
T Consensus        28 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~------~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~  101 (326)
T 2x7f_A           28 LVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD------EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQ  101 (326)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS------TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCE
T ss_pred             EEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc------cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccce
Confidence            458899999999999997 4688999998864332      235788999999998 7999999999997632    125


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++..
T Consensus       102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~  179 (326)
T 2x7f_A          102 LWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHK--VIHRDIKGQNVLLTENAEVKLVDFGVSAQL  179 (326)
T ss_dssp             EEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEECTTCCEEECCCTTTC--
T ss_pred             EEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCcHHHEEEcCCCCEEEeeCcCceec
Confidence            799999999999999997655567899999999999999999999998  999999999999999999999999998765


Q ss_pred             hhhh---------hhhcccccCC-----CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCcccc
Q 007711          456 AMAE---------MAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  521 (592)
Q Consensus       456 ~~~~---------~~~~~~~~~~-----~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (592)
                      ....         ..+.+|+...     ...++.++|||||||++|||+||+.||...  ...+.........  .....
T Consensus       180 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~--~~~~~  255 (326)
T 2x7f_A          180 DRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDM--HPMRALFLIPRNP--APRLK  255 (326)
T ss_dssp             -----------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHSC--CCCCS
T ss_pred             CcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCC--cHHHHHHHhhcCc--cccCC
Confidence            3221         1223333322     334688999999999999999999999432  2222222222211  11111


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                             ....+..+.+++.+||+.||++||++.++++
T Consensus       256 -------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          256 -------SKKWSKKFQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             -------CSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             -------ccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence                   1122357899999999999999999999986

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.4e-36  Score=311.40  Aligned_cols=241  Identities=21%  Similarity=0.311  Sum_probs=184.2

Q ss_pred             hhhcccCcCCCeEEEEEEe----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcc
Q 007711          301 DFSNVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~  375 (592)
                      .+.+.||+|+||.||+++.    .++..||||++....... .....+.+.+|++++.++ +|+||+++++++....  .
T Consensus        57 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~--~  133 (355)
T 1vzo_A           57 ELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQ-KAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET--K  133 (355)
T ss_dssp             EEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEE-EESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT--E
T ss_pred             EEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhh-hhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc--e
Confidence            3468899999999999997    478999999986432111 011234577899999999 6999999999998877  6


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++..
T Consensus       134 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~  209 (355)
T 1vzo_A          134 LHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHKLG--IIYRDIKLENILLDSNGHVVLTDFGLSKEF  209 (355)
T ss_dssp             EEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             EEEEeecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCcEEEeeCCCCeec
Confidence            79999999999999998743  46899999999999999999999998  999999999999999999999999999765


Q ss_pred             hhhhhh----hcccccCCCC--------CCCCCCcchhhHHHHHHHHhCCCcccCCC--CChHHHHHHHhcCCCCCcccc
Q 007711          456 AMAEMA----ATSKKLSSAP--------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLEDWAADYLSGVQPLQQFV  521 (592)
Q Consensus       456 ~~~~~~----~~~~~~~~~~--------~~s~ksDVwSfGvvl~El~tG~~P~~~~~--~~~~~~~~~~~~~~~~~~~~~  521 (592)
                      ......    ...+..+++|        .++.++|||||||++|||+||+.||....  .....+.........      
T Consensus       210 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~------  283 (355)
T 1vzo_A          210 VADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEP------  283 (355)
T ss_dssp             CGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCC------
T ss_pred             ccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCC------
Confidence            322111    1112223333        25778999999999999999999996433  233333333332211      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          522 DPTLSSFDEEQLETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       522 ~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                           .++...+..+.+++.+||+.||++||     +++|+++
T Consensus       284 -----~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~  321 (355)
T 1vzo_A          284 -----PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  321 (355)
T ss_dssp             -----CCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             -----CCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHc
Confidence                 11223345788999999999999999     8998876

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=1.9e-35  Score=302.53  Aligned_cols=241  Identities=15%  Similarity=0.210  Sum_probs=181.1

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~l  378 (592)
                      .+.+.||+|+||.||+|+. .++..||||++....        .+.+.+|++++++++ ||||+++++++........++
T Consensus        39 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--------~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~l  110 (330)
T 3nsz_A           39 QLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK--------KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPAL  110 (330)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC--------HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEE
T ss_pred             EEEEEecccCCeEEEEEEECCCCcEEEEEEecccc--------hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEE
Confidence            3458899999999999985 578899999875321        357899999999997 999999999998743336799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC-ceEEecCCcchhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAM  457 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~-~~ki~DfGla~~~~~  457 (592)
                      ||||+++++|.+++.     .+++..+..++.+++.||+|||+.+  |+||||||+|||++.++ .+||+|||+++....
T Consensus       111 v~e~~~~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~  183 (330)
T 3nsz_A          111 VFEHVNNTDFKQLYQ-----TLTDYDIRFYMYEILKALDYCHSMG--IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP  183 (330)
T ss_dssp             EEECCCCCCHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             EEeccCchhHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCC
Confidence            999999999998875     3788999999999999999999999  99999999999999776 899999999976532


Q ss_pred             hh--------hhhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHH-----------HHhcC-CC-
Q 007711          458 AE--------MAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA-----------DYLSG-VQ-  515 (592)
Q Consensus       458 ~~--------~~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~-----------~~~~~-~~-  515 (592)
                      ..        ..+.+++.... ..++.++|||||||++|||+||+.||............           ..... .. 
T Consensus       184 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  263 (330)
T 3nsz_A          184 GQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIE  263 (330)
T ss_dssp             TCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCC
T ss_pred             CCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccc
Confidence            21        12223333222 44788999999999999999999999543322111111           00000 00 


Q ss_pred             ---------------CCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          516 ---------------PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       516 ---------------~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                     .+......   ......+..+.+++.+||+.||++|||++|+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~  319 (330)
T 3nsz_A          264 LDPRFNDILGRHSRKRWERFVHS---ENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  319 (330)
T ss_dssp             CCTHHHHHHCCCCCCCGGGGCCT---TTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             cccchhhhhhhccccchhhhccc---cccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                           00000000   111224567999999999999999999999985

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=4.5e-36  Score=311.60  Aligned_cols=247  Identities=17%  Similarity=0.175  Sum_probs=166.7

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cce
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~~  376 (592)
                      +.+.||+|+||.||+|.. .+|..||||++.....   .....+.+.+|+++++.++||||+++++++.....    ...
T Consensus        33 ~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~  109 (367)
T 2fst_X           33 NLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ---SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDV  109 (367)
T ss_dssp             EEEECC----CCEEEEEETTTTEEEEEEECSSTTS---SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCC
T ss_pred             EeeEEeecCCeEEEEEEECCCCCEEEEEEeCcccc---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeE
Confidence            457899999999999985 5688999998854321   13345678899999999999999999999875421    146


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|+||+ +++|.+++..   ..+++..+..++.|+++||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       110 ~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~g--ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~  183 (367)
T 2fst_X          110 YLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSAD--IIHRDLKPSNLAVNEDCELKILDFGLARHTA  183 (367)
T ss_dssp             EEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECC--------
T ss_pred             EEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHhhEEECCCCCEEEeecccccccc
Confidence            8999999 6899988853   46899999999999999999999999  9999999999999999999999999998764


Q ss_pred             hhhhhhcccccCCC-------CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC-ccccC------
Q 007711          457 MAEMAATSKKLSSA-------PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL-QQFVD------  522 (592)
Q Consensus       457 ~~~~~~~~~~~~~~-------~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~-~~~~~------  522 (592)
                      ........+..+++       ..++.++|||||||++|||+||+.||...  +..+............ .....      
T Consensus       184 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~l~~i~~~~g~p~~~~~~~~~~~~  261 (367)
T 2fst_X          184 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT--DHIDQLKLILRLVGTPGAELLKKISSES  261 (367)
T ss_dssp             -------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCSCCHHHHTTCCCHH
T ss_pred             ccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCCHHHHHHhhhHH
Confidence            33222222223333       34788999999999999999999999532  2222222211100000 00000      


Q ss_pred             --------CCCCCC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          523 --------PTLSSF-----DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       523 --------~~~~~~-----~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                              +.....     .......+.+++.+||+.||++|||+.|+++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~  311 (367)
T 2fst_X          262 ARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  311 (367)
T ss_dssp             HHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence                    000000     0122356889999999999999999999976

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=1.1e-35  Score=307.10  Aligned_cols=251  Identities=19%  Similarity=0.223  Sum_probs=182.0

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC------
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE------  372 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------  372 (592)
                      +.+.+.||+|+||.||+|+. .+|..||+|++.......   .....+.+|++++++++||||+++++++....      
T Consensus        19 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           19 YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE---GFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             EEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSS---SSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             eeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccc---cchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            33458899999999999997 578999999886544322   23456889999999999999999999997643      


Q ss_pred             CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcc
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  452 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla  452 (592)
                      ....++||||+++ +|.+.+.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||++
T Consensus        96 ~~~~~lv~e~~~~-~l~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~~--ivH~Dlkp~NIl~~~~~~~kl~Dfg~a  171 (351)
T 3mi9_A           96 KGSIYLVFDFCEH-DLAGLLSN-VLVKFTLSEIKRVMQMLLNGLYYIHRNK--ILHRDMKAANVLITRDGVLKLADFGLA  171 (351)
T ss_dssp             -CEEEEEEECCSE-EHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CceEEEEEeccCC-CHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHCC--eeCCCCCHHHEEEcCCCCEEEccchhc
Confidence            1146899999974 77777653 3346899999999999999999999999  999999999999999999999999998


Q ss_pred             hhhhhh-------------hhhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCc
Q 007711          453 NEIAMA-------------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ  518 (592)
Q Consensus       453 ~~~~~~-------------~~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~  518 (592)
                      +.....             ...+.+|+... ...++.++|||||||++|||+||+.||....  ..+.............
T Consensus       172 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~--~~~~~~~i~~~~~~~~  249 (351)
T 3mi9_A          172 RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNT--EQHQLALISQLCGSIT  249 (351)
T ss_dssp             EECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCC
T ss_pred             ccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCC
Confidence            765311             11233333322 2346889999999999999999999995432  2222221111100000


Q ss_pred             cccCCCC----------------CCCCHH-----HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 QFVDPTL----------------SSFDEE-----QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 ~~~~~~~----------------~~~~~~-----~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+..                ......     ....+.+++.+||+.||++|||++|+++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  311 (351)
T 3mi9_A          250 PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  311 (351)
T ss_dssp             TTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence            0000000                000000     1245889999999999999999999886

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=2.1e-35  Score=298.06  Aligned_cols=222  Identities=18%  Similarity=0.307  Sum_probs=173.4

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHH-hcCCCCceeeeeEEEec--CCCcceEEE
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTL-SKVNHKNFVNLIGFCEE--EEPFTRMMV  379 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l-~~l~H~niv~l~g~~~~--~~~~~~~lv  379 (592)
                      +.||+|+||.||++.. .++..||+|.+..          ...+.+|++++ +..+||||+++++++..  ......++|
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~----------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv   93 (299)
T 3m2w_A           24 QVLGLGINGKVLQIFNKRTQEKFALKMLQD----------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIV   93 (299)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC----------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             cccccCCCeEEEEEEEcCCCcEEEEEEecc----------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEE
Confidence            6799999999999996 5688999998852          13467888887 55699999999999875  111257899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC---CCceEEecCCcchhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEIA  456 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~---~~~~ki~DfGla~~~~  456 (592)
                      |||+++|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+||+++.   ++.+||+|||+++...
T Consensus        94 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~  171 (299)
T 3m2w_A           94 MECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  171 (299)
T ss_dssp             ECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEESSSSTTCCEEECCCTTCEECT
T ss_pred             EeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEecCCCCCcEEEeccccccccc
Confidence            99999999999998665567999999999999999999999999  999999999999998   7899999999986543


Q ss_pred             hhhhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC----HHH
Q 007711          457 MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD----EEQ  532 (592)
Q Consensus       457 ~~~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  532 (592)
                                   ...++.++|||||||++|||+||+.||......  .    ....   ............+    ...
T Consensus       172 -------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~--~----~~~~---~~~~~~~~~~~~~~~~~~~~  229 (299)
T 3m2w_A          172 -------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL--A----ISPG---MKTRIRMGQYEFPNPEWSEV  229 (299)
T ss_dssp             -------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------------CC---SCCSSCTTCCSSCHHHHTTS
T ss_pred             -------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcch--h----hhHH---HHHHHhhccccCCchhcccC
Confidence                         234677899999999999999999999532211  0    0000   0111111111112    223


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      +..+.+++.+||+.||++|||+.|+++
T Consensus       230 ~~~~~~li~~~l~~dP~~Rps~~e~l~  256 (299)
T 3m2w_A          230 SEEVKMLIRNLLKTEPTQRMTITEFMN  256 (299)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            567999999999999999999999987

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=1.3e-35  Score=317.84  Aligned_cols=184  Identities=14%  Similarity=0.178  Sum_probs=139.9

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC---Ccce
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE---PFTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~---~~~~  376 (592)
                      .+.+.||+|+||.||+|+.. ++..||||++.....   .....+.+.+|+++|++++||||+++++++....   ....
T Consensus        56 ~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~  132 (458)
T 3rp9_A           56 EIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFE---DLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL  132 (458)
T ss_dssp             EECCC-------CEEEEEECC--CEEEEEEECSTTS---SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred             EEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhc---CHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence            45688999999999999854 688999998854321   1334577999999999999999999999985432   1257


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++||||+ +|+|.+++..  ...+++..+..++.+|+.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       133 ~lv~e~~-~~~L~~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH~~~--iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  207 (458)
T 3rp9_A          133 YVVLEIA-DSDFKKLFRT--PVYLTELHIKTLLYNLLVGVKYVHSAG--ILHRDLKPANCLVNQDCSVKVCDFGLARTVD  207 (458)
T ss_dssp             EEEECCC-SEEHHHHHHS--SCCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTCCEEECCCTTCBCTT
T ss_pred             EEEEecc-ccchhhhccc--CCCCCHHHHHHHHHHHHHHHHHHHhCC--cCCCCCChhhEEECCCCCEeecccccchhcc
Confidence            9999998 5789888863  456899999999999999999999999  9999999999999999999999999998653


Q ss_pred             hhh------------------------------------hhhccccc-CCCCCCCCCCcchhhHHHHHHHHhC
Q 007711          457 MAE------------------------------------MAATSKKL-SSAPSASLESNVYNFGVLLFEMVTG  492 (592)
Q Consensus       457 ~~~------------------------------------~~~~~~~~-~~~~~~s~ksDVwSfGvvl~El~tG  492 (592)
                      ...                                    ..+.+||. .....++.++|||||||++|||+||
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg  280 (458)
T 3rp9_A          208 YPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM  280 (458)
T ss_dssp             SCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred             CccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence            111                                    11223332 1233478899999999999999993

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=2.1e-35  Score=301.63  Aligned_cols=251  Identities=16%  Similarity=0.217  Sum_probs=182.1

Q ss_pred             hhhcccCcCCCeEEEEEEe--CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC---CCCceeeeeEEEecC---C
Q 007711          301 DFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV---NHKNFVNLIGFCEEE---E  372 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~--~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l---~H~niv~l~g~~~~~---~  372 (592)
                      .+.+.||+|+||.||+|+.  .+|..||+|.+........   ....+.+|+++++.+   +||||++++++|...   .
T Consensus        14 ~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~---~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~   90 (326)
T 1blx_A           14 ECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEG---MPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   90 (326)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTS---CBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSS
T ss_pred             eeeeeecccccEEEEEEEecCCCCEEEEEEEeccCccccc---CCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCC
Confidence            3458899999999999997  4678999999876543221   112455677666655   899999999998721   1


Q ss_pred             CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcc
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  452 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla  452 (592)
                      ....++||||++ |+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||++
T Consensus        91 ~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~g--i~H~dlkp~Nili~~~~~~kl~Dfg~~  167 (326)
T 1blx_A           91 ETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR--VVHRDLKPQNILVTSSGQIKLADFGLA  167 (326)
T ss_dssp             EEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECSCCSC
T ss_pred             CceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCCHHHeEEcCCCCEEEecCccc
Confidence            225789999997 69999987655566899999999999999999999998  999999999999999999999999999


Q ss_pred             hhhhhhhh--------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-----CCcc
Q 007711          453 NEIAMAEM--------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----PLQQ  519 (592)
Q Consensus       453 ~~~~~~~~--------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----~~~~  519 (592)
                      +.......        .+.+|+......++.++|||||||++|||+||+.||...  ...+..........     .+..
T Consensus       168 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~  245 (326)
T 1blx_A          168 RIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS--SDVDQLGKILDVIGLPGEEDWPR  245 (326)
T ss_dssp             CCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCGGGSCT
T ss_pred             ccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC--CHHHHHHHHHHHcCCCCcccCcc
Confidence            76543221        122233333334788999999999999999999999532  22222222221100     0000


Q ss_pred             -------cc----CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          520 -------FV----DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       520 -------~~----~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                             ..    ......+....+..+.+++.+||+.||++||++.|+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          246 DVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             TCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                   00    00011122234567899999999999999999999984

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=1.5e-35  Score=307.41  Aligned_cols=251  Identities=15%  Similarity=0.161  Sum_probs=181.5

Q ss_pred             hcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCC------chhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC---C
Q 007711          303 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDW------PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE---P  373 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~------~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~---~  373 (592)
                      .+.||+|+||.||+|...+|..||||++........      .....+.+.+|++++++++||||+++++++....   .
T Consensus        27 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  106 (362)
T 3pg1_A           27 QRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAM  106 (362)
T ss_dssp             EEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEEECCTTTC
T ss_pred             eEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEEeccCCCc
Confidence            488999999999999988899999999865433221      1223478999999999999999999999986532   1


Q ss_pred             cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcch
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  453 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~  453 (592)
                      ...++||||++ |+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++
T Consensus       107 ~~~~lv~e~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~  182 (362)
T 3pg1_A          107 HKLYLVTELMR-TDLAQVIHD-QRIVISPQHIQYFMYHILLGLHVLHEAG--VVHRDLHPGNILLADNNDITICDFNLAR  182 (362)
T ss_dssp             CEEEEEEECCS-EEHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECCTTC--
T ss_pred             ceEEEEEccCC-CCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHCc--CEecCCChHHEEEcCCCCEEEEecCccc
Confidence            24689999997 688888763 3456899999999999999999999998  9999999999999999999999999997


Q ss_pred             hhhhhh--------hhhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC---------
Q 007711          454 EIAMAE--------MAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ---------  515 (592)
Q Consensus       454 ~~~~~~--------~~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~---------  515 (592)
                      ......        ..+.+|+.... ..++.++|||||||++|||+||+.||...  ...+..........         
T Consensus       183 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~  260 (362)
T 3pg1_A          183 EDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGS--TFYNQLNKIVEVVGTPKIEDVVM  260 (362)
T ss_dssp             -------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             ccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHcCCCChHHhhh
Confidence            543221        12333443322 45788999999999999999999999532  22222221111000         


Q ss_pred             ------------CCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          516 ------------PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       516 ------------~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                  ....................+.+++.+||+.||++|||+.|+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  316 (362)
T 3pg1_A          261 FSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR  316 (362)
T ss_dssp             TSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence                        00000000000011223456889999999999999999999986

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=7.2e-35  Score=292.22  Aligned_cols=242  Identities=20%  Similarity=0.263  Sum_probs=187.8

Q ss_pred             HhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      .+.+.+.||+|+||.||+|+.. ++..||+|++.......   ...+.+.+|++++++++||||+++++++....  ..+
T Consensus        23 ~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~   97 (287)
T 2wei_A           23 RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN---KDTSTILREVELLKKLDHPNIMKLFEILEDSS--SFY   97 (287)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSS---SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEE
T ss_pred             cceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccch---HHHHHHHHHHHHHHhccCCCccEEEEEEeCCC--eEE
Confidence            4556689999999999999975 68899999986544322   23567899999999999999999999998876  679


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC---CceEEecCCcchh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED---YAAKLSDLSFWNE  454 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~---~~~ki~DfGla~~  454 (592)
                      +|+||+++++|.+++...  ..+++..+..++.+++.||+|||+.+  ++||||||+||+++.+   +.+||+|||+++.
T Consensus        98 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~  173 (287)
T 2wei_A           98 IVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKHN--IVHRDLKPENILLESKEKDCDIKIIDFGLSTC  173 (287)
T ss_dssp             EEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEESCSSTTCCEEECSTTGGGT
T ss_pred             EEEEccCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCChhhEEEecCCCcccEEEeccCccee
Confidence            999999999999888643  46899999999999999999999998  9999999999999754   4799999999876


Q ss_pred             hhhh--------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          455 IAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       455 ~~~~--------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                      ....        ...+.+|+.... .++.++||||||+++|||+||+.||..  ....+.......+.....   .+.. 
T Consensus       174 ~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~---~~~~-  246 (287)
T 2wei_A          174 FQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYG--KNEYDILKRVETGKYAFD---LPQW-  246 (287)
T ss_dssp             BCCCSSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCC---SGGG-
T ss_pred             ecCCCccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCC--CCHHHHHHHHHcCCCCCC---chhh-
Confidence            5321        122333433322 378899999999999999999999953  333344333333321111   0001 


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                         ...+..+.+++.+||+.||++|||+.|+++
T Consensus       247 ---~~~~~~~~~li~~~l~~dp~~Rps~~ell~  276 (287)
T 2wei_A          247 ---RTISDDAKDLIRKMLTFHPSLRITATQCLE  276 (287)
T ss_dssp             ---TTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---hhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence               122356899999999999999999999987

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=1.1e-35  Score=331.56  Aligned_cols=233  Identities=17%  Similarity=0.180  Sum_probs=184.4

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ++.+.||+|+||.||+|+.. +++.||||++.......  ....+.+..|..++..+ +|+||+++++++...+  ..++
T Consensus       344 ~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~--~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~--~~~l  419 (674)
T 3pfq_A          344 NFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQ--DDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD--RLYF  419 (674)
T ss_dssp             EEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHH--TTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSS--EEEE
T ss_pred             EEEEEEccCCCEEEEEEEECCCCcEEEEEEEecccccc--HHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCC--EEEE
Confidence            34578999999999999965 57889999987532111  12245678899999987 7999999999998776  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      ||||+++|+|.++++..  ..+++..+..++.+|+.||+|||+.+  |+||||||+||||+.++.+||+|||+++.....
T Consensus       420 V~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~g--IiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~  495 (674)
T 3pfq_A          420 VMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSKG--IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWD  495 (674)
T ss_dssp             EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTS--EECCCCCSTTEEECSSSCEEECCCTTCEECCCT
T ss_pred             EEeCcCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCC--eEeccCChhhEEEcCCCcEEEeecceeeccccC
Confidence            99999999999998743  46899999999999999999999998  999999999999999999999999999853211


Q ss_pred             ---------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          459 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       459 ---------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                               ...+.+||......++.++|||||||++|||+||+.||.  ..+..+....+......           ++
T Consensus       496 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~--~~~~~~~~~~i~~~~~~-----------~p  562 (674)
T 3pfq_A          496 GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFE--GEDEDELFQSIMEHNVA-----------YP  562 (674)
T ss_dssp             TCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHSSCCC-----------CC
T ss_pred             CcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCC--CCCHHHHHHHHHhCCCC-----------CC
Confidence                     112233333344457899999999999999999999994  34445555555543221           12


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTM  554 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~  554 (592)
                      ...+.++.+++.+||+.||++||++
T Consensus       563 ~~~s~~~~~li~~lL~~dP~~R~~~  587 (674)
T 3pfq_A          563 KSMSKEAVAICKGLMTKHPGKRLGC  587 (674)
T ss_dssp             TTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred             ccCCHHHHHHHHHHccCCHHHCCCC
Confidence            2334578999999999999999997

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=1.2e-35  Score=309.10  Aligned_cols=246  Identities=15%  Similarity=0.206  Sum_probs=179.0

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc----ce
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF----TR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~----~~  376 (592)
                      +.+.||+|+||.||+|... +|..||||++.....   .....+.+.+|+.+++.++||||+++++++......    ..
T Consensus        46 ~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~  122 (371)
T 4exu_A           46 SPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ---SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDF  122 (371)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTS---SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCC
T ss_pred             EEeEEecCCCeEEEEEEECCCCCEEEEEEeccccc---chhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeE
Confidence            4578999999999999864 688999998864332   234567889999999999999999999999866521    23


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++||||+. |+|.+++.    ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       123 ~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~  195 (371)
T 4exu_A          123 YLVMPFMQ-TDLQKIMG----MEFSEEKIQYLVYQMLKGLKYIHSAG--VVHRDLKPGNLAVNEDCELKILDFGLARHAD  195 (371)
T ss_dssp             EEEEECCC-EEHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTCCEEECSTTCC----
T ss_pred             EEEEcccc-ccHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHCC--CcCCCcCHHHeEECCCCCEEEEecCcccccc
Confidence            89999997 68887764    34899999999999999999999998  9999999999999999999999999998664


Q ss_pred             hhhhh------hcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC-cccc-------
Q 007711          457 MAEMA------ATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL-QQFV-------  521 (592)
Q Consensus       457 ~~~~~------~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~-~~~~-------  521 (592)
                      .....      +.+|+.... ..++.++|||||||++|||+||+.||...  +..+............ ....       
T Consensus       196 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~  273 (371)
T 4exu_A          196 AEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK--DYLDQLTQILKVTGVPGTEFVQKLNDKA  273 (371)
T ss_dssp             ----CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCHHHHTTCSCHH
T ss_pred             cCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhCCCcHHHHHHhhhhh
Confidence            33222      223332222 45788999999999999999999999532  2222222221110000 0000       


Q ss_pred             ------------CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 ------------DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ------------~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                  ..............+.+++.+||+.||++|||+.|+++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  323 (371)
T 4exu_A          274 AKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  323 (371)
T ss_dssp             HHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence                        00000011123467899999999999999999999976

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=2.2e-35  Score=319.74  Aligned_cols=243  Identities=18%  Similarity=0.197  Sum_probs=184.0

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCC--------chhHHHHHHHHHHHHhcCCCCceeeeeEEEecC
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW--------PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE  371 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~--------~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~  371 (592)
                      .+.+.||+|+||.||+|... ++..+|+|++........        .....+.+.+|++++++++||||+++++++...
T Consensus        39 ~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  118 (504)
T 3q5i_A           39 FKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDK  118 (504)
T ss_dssp             EEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEEECS
T ss_pred             EEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC
Confidence            34578999999999999964 578999999875432210        012356789999999999999999999999887


Q ss_pred             CCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC---ceEEec
Q 007711          372 EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAKLSD  448 (592)
Q Consensus       372 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~---~~ki~D  448 (592)
                      .  ..++|||||++|+|.+++...  ..+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++   .+||+|
T Consensus       119 ~--~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~~~~~~~~~kl~D  192 (504)
T 3q5i_A          119 K--YFYLVTEFYEGGELFEQIINR--HKFDECDAANIMKQILSGICYLHKHN--IVHRDIKPENILLENKNSLLNIKIVD  192 (504)
T ss_dssp             S--EEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEESSTTCCSSEEECC
T ss_pred             C--EEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCcHHHEEEecCCCCccEEEEE
Confidence            7  679999999999999988643  46899999999999999999999999  99999999999999775   699999


Q ss_pred             CCcchhhhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          449 LSFWNEIAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       449 fGla~~~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      ||+++......        ..+.+|+... ..++.++|||||||++|||++|+.||.  .....+.......+......-
T Consensus       193 fg~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~--~~~~~~~~~~i~~~~~~~~~~  269 (504)
T 3q5i_A          193 FGLSSFFSKDYKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFG--GQNDQDIIKKVEKGKYYFDFN  269 (504)
T ss_dssp             CTTCEECCTTSCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCCCCHH
T ss_pred             CCCCEEcCCCCccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHcCCCCCCcc
Confidence            99997654321        1122233222 237889999999999999999999994  334444444444332111100


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .       ....+..+.+++.+||+.||.+|||++|+++
T Consensus       270 ~-------~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~  301 (504)
T 3q5i_A          270 D-------WKNISDEAKELIKLMLTYDYNKRCTAEEALN  301 (504)
T ss_dssp             H-------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             c-------cCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            0       0122357899999999999999999999975

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=313.17  Aligned_cols=247  Identities=15%  Similarity=0.217  Sum_probs=168.4

Q ss_pred             hcccCcCCCeEEEEEEeC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          303 SNVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .++||+|+||.||+|+..   ++..||+|.+.....       ...+.+|++++++++||||+++++++........++|
T Consensus        26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~-------~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv   98 (405)
T 3rgf_A           26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI-------SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLL   98 (405)
T ss_dssp             SCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC-------CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEE
T ss_pred             CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC-------CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEE
Confidence            357999999999999975   578899998853321       2468899999999999999999999965433368999


Q ss_pred             EeeCCCCCchhhcccc-------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE----cCCCceEEec
Q 007711          380 FEYAPNGTLFEHIHIK-------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL----TEDYAAKLSD  448 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~-------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl----~~~~~~ki~D  448 (592)
                      |||++ |+|.+++...       ....+++..+..|+.+++.||+|||+.+  |+||||||+|||+    +.++.+||+|
T Consensus        99 ~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~--ivH~Dlkp~NIll~~~~~~~~~~kl~D  175 (405)
T 3rgf_A           99 FDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW--VLHRDLKPANILVMGEGPERGRVKIAD  175 (405)
T ss_dssp             EECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECCSSTTTTCEEECC
T ss_pred             EeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC--EeCCCcCHHHeEEecCCCCCCcEEEEE
Confidence            99996 5887777521       1235899999999999999999999999  9999999999999    7789999999


Q ss_pred             CCcchhhhhhh------------hhhcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCCh-------HHHHH
Q 007711          449 LSFWNEIAMAE------------MAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-------EDWAA  508 (592)
Q Consensus       449 fGla~~~~~~~------------~~~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~-------~~~~~  508 (592)
                      ||+++......            ..+.+|+.... ..++.++|||||||++|||+||+.||.....+.       .+...
T Consensus       176 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~  255 (405)
T 3rgf_A          176 MGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLD  255 (405)
T ss_dssp             TTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHH
T ss_pred             CCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHH
Confidence            99998764321            11233332222 347889999999999999999999996433211       11111


Q ss_pred             HHhcCCC-----CCccccC-------------CCCCCC---------CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          509 DYLSGVQ-----PLQQFVD-------------PTLSSF---------DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       509 ~~~~~~~-----~~~~~~~-------------~~~~~~---------~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .......     .+..+..             ......         .......+.+|+.+||+.||.+|||++|+++
T Consensus       256 ~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~  333 (405)
T 3rgf_A          256 RIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ  333 (405)
T ss_dssp             HHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            1111000     0000000             000000         0001346789999999999999999999986

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.8e-36  Score=312.99  Aligned_cols=245  Identities=16%  Similarity=0.238  Sum_probs=177.8

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC-------
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE-------  372 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~-------  372 (592)
                      .+.+.||+|+||.||+|.. .+|..||||++......         +.+|+++++.++||||+++++++....       
T Consensus        10 ~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~---------~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~   80 (383)
T 3eb0_A           10 SLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY---------KNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPP   80 (383)
T ss_dssp             EEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS---------CCHHHHHHTTCCCTTBCCEEEEEEEC--------
T ss_pred             EEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch---------HHHHHHHHHHcCCCCccchhheeeecCccccccc
Confidence            3458899999999999985 57899999988643221         236999999999999999999985432       


Q ss_pred             -----------------------------CcceEEEEeeCCCCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 007711          373 -----------------------------PFTRMMVFEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQ  421 (592)
Q Consensus       373 -----------------------------~~~~~lv~Ey~~~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~  421 (592)
                                                   ....++||||++ |+|.+.+..  .....+++..+..++.|++.||+|||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  159 (383)
T 3eb0_A           81 QPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHS  159 (383)
T ss_dssp             -----------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                                         113689999998 588777753  345679999999999999999999999


Q ss_pred             CCCCeEeeCcCCCCeEEc-CCCceEEecCCcchhhhhhhh--------hhcccccCC-CCCCCCCCcchhhHHHHHHHHh
Q 007711          422 LNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWNEIAMAEM--------AATSKKLSS-APSASLESNVYNFGVLLFEMVT  491 (592)
Q Consensus       422 ~~~~ivH~dLk~~NiLl~-~~~~~ki~DfGla~~~~~~~~--------~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~t  491 (592)
                      ++  |+||||||+|||++ .++.+||+|||+++.......        .+.+++... ...++.++|||||||++|||++
T Consensus       160 ~g--i~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~  237 (383)
T 3eb0_A          160 LG--ICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELIL  237 (383)
T ss_dssp             TT--EECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH
T ss_pred             Cc--CccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHh
Confidence            99  99999999999998 689999999999986532221        122233222 2347889999999999999999


Q ss_pred             CCCcccCCCCChHHHHHHHhcCC------------CCCccccCCCCC------CCCHHHHHHHHHHHHHhcccCCCCCCC
Q 007711          492 GRLPYLVDNGSLEDWAADYLSGV------------QPLQQFVDPTLS------SFDEEQLETLGELIKSCVRADPEKRPT  553 (592)
Q Consensus       492 G~~P~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~------~~~~~~~~~l~~l~~~Cl~~dP~~RPs  553 (592)
                      |+.||...  ...+.........            .......-+...      .++...+..+.+++.+||+.||++|||
T Consensus       238 g~~pf~~~--~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t  315 (383)
T 3eb0_A          238 GKPLFSGE--TSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRIN  315 (383)
T ss_dssp             SSCSSCCS--SHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCC
T ss_pred             CCCCCCCC--ChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCC
Confidence            99999532  2222222221100            000010001110      122334567899999999999999999


Q ss_pred             HHHHHH
Q 007711          554 MRDIAA  559 (592)
Q Consensus       554 ~~ev~~  559 (592)
                      +.|+++
T Consensus       316 ~~e~l~  321 (383)
T 3eb0_A          316 PYEAMA  321 (383)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999984

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=3.3e-35  Score=299.80  Aligned_cols=244  Identities=20%  Similarity=0.251  Sum_probs=179.7

Q ss_pred             HhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCC---CchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKD---WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  374 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~---~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  374 (592)
                      .+.+.+.||+|+||.||+|... ++..||||.+.......   ........|.+|++++++++||||+++++++....  
T Consensus        11 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--   88 (322)
T 2ycf_A           11 EYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED--   88 (322)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS--
T ss_pred             ceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc--
Confidence            3456689999999999999964 57899999886533210   01122345889999999999999999999987653  


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc---eEEecCCc
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA---AKLSDLSF  451 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~---~ki~DfGl  451 (592)
                       .++||||+++|+|.+++..  ...+++.....++.+++.||+|||+++  |+||||||+|||++.++.   +||+|||+
T Consensus        89 -~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~  163 (322)
T 2ycf_A           89 -YYIVLELMEGGELFDKVVG--NKRLKEATCKLYFYQMLLAVQYLHENG--IIHRDLKPENVLLSSQEEDCLIKITDFGH  163 (322)
T ss_dssp             -EEEEEECCTTEETHHHHST--TCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEESSSSSSCCEEECCCTT
T ss_pred             -eEEEEecCCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHEEEecCCCCCeEEEccCcc
Confidence             6899999999999998863  457899999999999999999999998  999999999999987654   99999999


Q ss_pred             chhhhhhh--------hhhcccccC---CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCC--ChHHHHHHHhcCCCCCc
Q 007711          452 WNEIAMAE--------MAATSKKLS---SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQ  518 (592)
Q Consensus       452 a~~~~~~~--------~~~~~~~~~---~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~  518 (592)
                      ++......        ..+.+|+..   ....++.++|||||||++|||+||+.||.....  ......   ..+.....
T Consensus       164 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~---~~~~~~~~  240 (322)
T 2ycf_A          164 SKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQI---TSGKYNFI  240 (322)
T ss_dssp             CEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHH---HHTCCCCC
T ss_pred             ceecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHH---HhCccccC
Confidence            87653221        122233321   233467899999999999999999999964332  222211   11111100


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 ~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .       ......+..+.+++.+||+.||++||++.|+++
T Consensus       241 ~-------~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          241 P-------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             H-------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             c-------hhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence            0       001122457899999999999999999999874

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=303.94  Aligned_cols=246  Identities=15%  Similarity=0.201  Sum_probs=181.1

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc----ce
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF----TR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~----~~  376 (592)
                      +.+.||+|+||.||+|... +|..||||.+.....   .....+.+.+|+.++++++||||+++++++......    ..
T Consensus        28 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~  104 (353)
T 3coi_A           28 SPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ---SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDF  104 (353)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTS---SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCC
T ss_pred             EeeeEecCCCeEEEEEEECCCCCEEEEEEeccccc---chHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeE
Confidence            4578999999999999964 689999998864322   234467789999999999999999999999765421    24


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++||||++ |+|.+++.    ..+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++...
T Consensus       105 ~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~al~~LH~~~--ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~  177 (353)
T 3coi_A          105 YLVMPFMQ-TDLQKIMG----LKFSEEKIQYLVYQMLKGLKYIHSAG--VVHRDLKPGNLAVNEDCELKILDFGLARHAD  177 (353)
T ss_dssp             EEEEECCS-EEGGGTTT----SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCCGGGEEECTTCCEEECSTTCTTC--
T ss_pred             EEEecccc-CCHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEeECCCCcEEEeecccccCCC
Confidence            89999997 68888774    34899999999999999999999998  9999999999999999999999999998754


Q ss_pred             hhhhh------hcccccCCC-CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC--------------
Q 007711          457 MAEMA------ATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ--------------  515 (592)
Q Consensus       457 ~~~~~------~~~~~~~~~-~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~--------------  515 (592)
                      .....      +.+|+.... ..++.++|||||||++|||+||+.||....  ..+..........              
T Consensus       178 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~  255 (353)
T 3coi_A          178 AEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD--YLDQLTQILKVTGVPGTEFVQKLNDKA  255 (353)
T ss_dssp             ------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSC--HHHHHHHHHHHHCBCCHHHHTTCSCHH
T ss_pred             CCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHHHhhHH
Confidence            33222      222332222 346889999999999999999999995432  2222211111000              


Q ss_pred             ------CCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          516 ------PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       516 ------~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                            .+.....+.........+..+.+++.+||+.||++|||+.|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  305 (353)
T 3coi_A          256 AKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  305 (353)
T ss_dssp             HHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                  00000111111222344567999999999999999999999975

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=3.4e-35  Score=311.95  Aligned_cols=188  Identities=15%  Similarity=0.178  Sum_probs=150.1

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC---cce
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~---~~~  376 (592)
                      .+.+.||+|+||.||+|+.. ++..||||++.....   .....+.+.+|++++++++|+||+++++++.....   ...
T Consensus        29 ~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  105 (432)
T 3n9x_A           29 IIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFE---DLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDEL  105 (432)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTT---SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred             EEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhc---ChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeE
Confidence            34688999999999999964 578899998864321   13345789999999999999999999999876531   257


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++||||++ |+|.+++..  ...+++..+..++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       106 ~lv~e~~~-~~L~~~~~~--~~~l~~~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~~~~~~kL~DFGla~~~~  180 (432)
T 3n9x_A          106 YIVLEIAD-SDLKKLFKT--PIFLTEEHIKTILYNLLLGENFIHESG--IIHRDLKPANCLLNQDCSVKVCDFGLARTIN  180 (432)
T ss_dssp             EEEEECCS-EEHHHHHHS--SCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEEC-
T ss_pred             EEEEecCC-cCHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHeEECCCCCEEEccCCCccccc
Confidence            99999996 699998863  456899999999999999999999999  9999999999999999999999999998754


Q ss_pred             hhhh-------------------------hhcccccCCCC-------CCCCCCcchhhHHHHHHHHhCCCcc
Q 007711          457 MAEM-------------------------AATSKKLSSAP-------SASLESNVYNFGVLLFEMVTGRLPY  496 (592)
Q Consensus       457 ~~~~-------------------------~~~~~~~~~~~-------~~s~ksDVwSfGvvl~El~tG~~P~  496 (592)
                      ....                         ....+..+++|       .++.++|||||||++|||+||..||
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~  252 (432)
T 3n9x_A          181 SEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH  252 (432)
T ss_dssp             ------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred             ccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence            3211                         11112233333       4788999999999999999865554

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=2.1e-35  Score=297.55  Aligned_cols=243  Identities=22%  Similarity=0.323  Sum_probs=187.6

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCc----hhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcc
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWP----KNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~----~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.||+|+||.||+|... +|..||||.+.........    ....+.+.+|++++++++ ||||+++++++....  .
T Consensus        21 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~--~   98 (298)
T 1phk_A           21 PKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNT--F   98 (298)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS--E
T ss_pred             eeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccCC--e
Confidence            4578999999999999974 6889999998654322211    233567889999999995 999999999998776  6


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++..
T Consensus        99 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~  174 (298)
T 1phk_A           99 FFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKLN--IVHRDLKPENILLDDDMNIKLTDFGFSCQL  174 (298)
T ss_dssp             EEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCcceEEEcCCCcEEEecccchhhc
Confidence            79999999999999998643  46899999999999999999999999  999999999999999999999999998765


Q ss_pred             hhhh--------hhhcccccC------CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCcccc
Q 007711          456 AMAE--------MAATSKKLS------SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  521 (592)
Q Consensus       456 ~~~~--------~~~~~~~~~------~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (592)
                      ....        ..+.+|+..      ....++.++||||||+++|||+||+.||..  ....+.......+....   .
T Consensus       175 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~---~  249 (298)
T 1phk_A          175 DPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWH--RKQMLMLRMIMSGNYQF---G  249 (298)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCC---C
T ss_pred             CCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcC--ccHHHHHHHHhcCCccc---C
Confidence            3221        122223221      133467899999999999999999999943  33333333333322111   0


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+    .....+..+.+++.+||+.||++||++.|+++
T Consensus       250 ~~----~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          250 SP----EWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             TT----TGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             cc----cccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence            11    11234467999999999999999999999875

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=2e-35  Score=312.46  Aligned_cols=249  Identities=20%  Similarity=0.258  Sum_probs=178.1

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecC----CCcce
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE----EPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~----~~~~~  376 (592)
                      +.+.||+|+||.||+|+.. +|..||||++.....         .+.+|+++|++++|+|||++++++...    +....
T Consensus        58 ~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~---------~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~  128 (420)
T 1j1b_A           58 DTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR---------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL  128 (420)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT---------SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEE
T ss_pred             eeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch---------hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeE
Confidence            4578999999999999975 589999998854321         134699999999999999999998642    11235


Q ss_pred             EEEEeeCCCCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC-CceEEecCCcch
Q 007711          377 MMVFEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWN  453 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~-~~~ki~DfGla~  453 (592)
                      ++||||+++ +|.+.+..  .....+++..+..++.|+++||+|||+.+  |+||||||+|||++.+ +.+||+|||+++
T Consensus       129 ~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NILl~~~~~~~kl~DFG~a~  205 (420)
T 1j1b_A          129 NLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG--ICHRDIKPQNLLLDPDTAVLKLCDFGSAK  205 (420)
T ss_dssp             EEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT--EECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             Eeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCChhhEEEeCCCCeEEeccchhhh
Confidence            799999975 66665542  24567899999999999999999999998  9999999999999955 678999999998


Q ss_pred             hhhhhh--------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcC-----------
Q 007711          454 EIAMAE--------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG-----------  513 (592)
Q Consensus       454 ~~~~~~--------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~-----------  513 (592)
                      ......        ..+.++|... ...++.++|||||||++|||+||+.||....  ..+.....+..           
T Consensus       206 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~--~~~~l~~i~~~lg~p~~~~~~~  283 (420)
T 1j1b_A          206 QLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS--GVDQLVEIIKVLGTPTREQIRE  283 (420)
T ss_dssp             ECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHHHCSCCHHHHHH
T ss_pred             hcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHh
Confidence            653221        1122333222 2247889999999999999999999995432  22222111110           


Q ss_pred             -CCCCccccCCCCCC------CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHhh
Q 007711          514 -VQPLQQFVDPTLSS------FDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREI  564 (592)
Q Consensus       514 -~~~~~~~~~~~~~~------~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~--~L~~i  564 (592)
                       ......+.-+....      ++...+.++.+|+.+||+.||++||++.|+++  .++++
T Consensus       284 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~  343 (420)
T 1j1b_A          284 MNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDEL  343 (420)
T ss_dssp             HCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGG
T ss_pred             hChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCHhhccc
Confidence             00111111111111      12233467999999999999999999999985  34444

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=3.1e-35  Score=301.52  Aligned_cols=247  Identities=18%  Similarity=0.240  Sum_probs=185.3

Q ss_pred             hhhhcccCcCCCeEEEEEEe--CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCC------ceeeeeEEEecC
Q 007711          300 EDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK------NFVNLIGFCEEE  371 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~--~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~------niv~l~g~~~~~  371 (592)
                      +.+.+.||+|+||.||+|..  .++..||||++...      ....+.+.+|++++..++|+      +++++++++...
T Consensus        16 y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~------~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~   89 (339)
T 1z57_A           16 YEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV------DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH   89 (339)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS------HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEET
T ss_pred             eEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC------CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccC
Confidence            34568899999999999986  36889999988532      23456788999999888765      499999999887


Q ss_pred             CCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC-----------
Q 007711          372 EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-----------  440 (592)
Q Consensus       372 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~-----------  440 (592)
                      +  ..++||||+ +++|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+|||++.           
T Consensus        90 ~--~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~~~~~~~~~~~~~  164 (339)
T 1z57_A           90 G--HICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNK--LTHTDLKPENILFVQSDYTEAYNPKI  164 (339)
T ss_dssp             T--EEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESCCCEEEEEC---
T ss_pred             C--cEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCC--CcCCCCCHHHEEEeccccccccCCcc
Confidence            7  679999999 889999997665567899999999999999999999998  999999999999987           


Q ss_pred             --------CCceEEecCCcchhhhhhh------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHH
Q 007711          441 --------DYAAKLSDLSFWNEIAMAE------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDW  506 (592)
Q Consensus       441 --------~~~~ki~DfGla~~~~~~~------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~  506 (592)
                              ++.+||+|||+++......      ..+.+|+......++.++|||||||++|||+||+.||...+  ..+.
T Consensus       165 ~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~--~~~~  242 (339)
T 1z57_A          165 KRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHD--SKEH  242 (339)
T ss_dssp             -CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSC--HHHH
T ss_pred             ccccccccCCCceEeeCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC--hHHH
Confidence                    6689999999987654221      22334444444457899999999999999999999995432  2211


Q ss_pred             HHHHhcCCCCCcc----------c---------------------cCC--CCCCCCHHHHHHHHHHHHHhcccCCCCCCC
Q 007711          507 AADYLSGVQPLQQ----------F---------------------VDP--TLSSFDEEQLETLGELIKSCVRADPEKRPT  553 (592)
Q Consensus       507 ~~~~~~~~~~~~~----------~---------------------~~~--~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs  553 (592)
                      .............          .                     ..+  .........+..+.+++.+||+.||++|||
T Consensus       243 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt  322 (339)
T 1z57_A          243 LAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRIT  322 (339)
T ss_dssp             HHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCC
T ss_pred             HHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccC
Confidence            1111000000000          0                     000  001123345678999999999999999999


Q ss_pred             HHHHHH
Q 007711          554 MRDIAA  559 (592)
Q Consensus       554 ~~ev~~  559 (592)
                      +.|+++
T Consensus       323 ~~ell~  328 (339)
T 1z57_A          323 LREALK  328 (339)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            999874

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=1.6e-35  Score=310.88  Aligned_cols=251  Identities=17%  Similarity=0.163  Sum_probs=183.7

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC--------CCceeeeeEEEec
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN--------HKNFVNLIGFCEE  370 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~--------H~niv~l~g~~~~  370 (592)
                      +.+.+.||+|+||.||+|+. .++..||||++...      ....+.+.+|++++++++        |+||+++++++..
T Consensus        39 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~  112 (397)
T 1wak_A           39 YHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA------EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKI  112 (397)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC------HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEE
T ss_pred             EEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC------CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceee
Confidence            44568899999999999985 46889999988532      234567889999999885        7889999999873


Q ss_pred             C--CCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEeeCcCCCCeEEcCCC-----
Q 007711          371 E--EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDY-----  442 (592)
Q Consensus       371 ~--~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~-~~~ivH~dLk~~NiLl~~~~-----  442 (592)
                      .  .....++||||+ +|+|.+++.......+++..+..|+.|++.||+|||+. +  |+||||||+|||++.++     
T Consensus       113 ~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~g--ivHrDikp~NIll~~~~~~~~~  189 (397)
T 1wak_A          113 SGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCR--IIHTDIKPENILLSVNEQYIRR  189 (397)
T ss_dssp             EETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC--EECCCCSGGGEEECCCHHHHHH
T ss_pred             cCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHeeEeccchhhhh
Confidence            2  122579999999 66777776555556799999999999999999999997 8  99999999999999775     


Q ss_pred             --------------------------------------------ceEEecCCcchhhhhhh------hhhcccccCCCCC
Q 007711          443 --------------------------------------------AAKLSDLSFWNEIAMAE------MAATSKKLSSAPS  472 (592)
Q Consensus       443 --------------------------------------------~~ki~DfGla~~~~~~~------~~~~~~~~~~~~~  472 (592)
                                                                  .+||+|||+++......      ..+.+|+......
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~  269 (397)
T 1wak_A          190 LAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSG  269 (397)
T ss_dssp             HHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSC
T ss_pred             hhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCC
Confidence                                                        79999999997654321      2233333333334


Q ss_pred             CCCCCcchhhHHHHHHHHhCCCcccCCCCC----hHHHHHHHh---cC------------------CCCCccccCCC---
Q 007711          473 ASLESNVYNFGVLLFEMVTGRLPYLVDNGS----LEDWAADYL---SG------------------VQPLQQFVDPT---  524 (592)
Q Consensus       473 ~s~ksDVwSfGvvl~El~tG~~P~~~~~~~----~~~~~~~~~---~~------------------~~~~~~~~~~~---  524 (592)
                      ++.++|||||||++|||+||+.||......    ..+......   ..                  ......+.+..   
T Consensus       270 ~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (397)
T 1wak_A          270 YNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG  349 (397)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCC
T ss_pred             CCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcc
Confidence            788999999999999999999999643321    111111110   00                  00000000000   


Q ss_pred             -------CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          525 -------LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       525 -------~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                             ....+......+.+++.+||+.||++|||+.|+++
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          350 LFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             hhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence                   01234566778999999999999999999999875

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=299.97  Aligned_cols=245  Identities=14%  Similarity=0.170  Sum_probs=173.6

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC--------
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE--------  372 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~--------  372 (592)
                      +.+.||+|+||.||+|... +++.||+|.+....     ....+++.+|++++++++||||+++++++....        
T Consensus        15 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           15 DLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTD-----PQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             EEEECC-----CEEEEEETTTTEEEEEEEEECCS-----HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred             EEEEeccCCCeEEEEEEECCCCeEEEEEEEecCC-----hHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence            4578999999999999975 48899999886432     234577999999999999999999999884321        


Q ss_pred             ----CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc-CCCceEEe
Q 007711          373 ----PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLS  447 (592)
Q Consensus       373 ----~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~-~~~~~ki~  447 (592)
                          ....++||||++ |+|.+++..   ..+++..+..++.+++.||+|||+.+  |+||||||+||+++ +++.+||+
T Consensus        90 ~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~~kl~  163 (320)
T 2i6l_A           90 SLTELNSVYIVQEYME-TDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIHSAN--VLHRDLKPANLFINTEDLVLKIG  163 (320)
T ss_dssp             -CCSCSEEEEEEECCS-EEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSGGGEEEETTTTEEEEC
T ss_pred             cccccCceeEEeeccC-CCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEcCCCCeEEEc
Confidence                125689999997 699998853   46889999999999999999999998  99999999999997 57799999


Q ss_pred             cCCcchhhhhhhh------------hhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCC
Q 007711          448 DLSFWNEIAMAEM------------AATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV  514 (592)
Q Consensus       448 DfGla~~~~~~~~------------~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~  514 (592)
                      |||+++.......            .+.+++.. ....++.++|||||||++|||+||+.||...  ...+.........
T Consensus       164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~--~~~~~~~~~~~~~  241 (320)
T 2i6l_A          164 DFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGA--HELEQMQLILESI  241 (320)
T ss_dssp             CCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHS
T ss_pred             cCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHhc
Confidence            9999986532111            11222221 1234678899999999999999999999532  2222222222111


Q ss_pred             CCCc------------c-----ccCCCC--CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          515 QPLQ------------Q-----FVDPTL--SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       515 ~~~~------------~-----~~~~~~--~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....            .     ...+..  .......+..+.+++.+||+.||++||++.|+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          242 PVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS  305 (320)
T ss_dssp             CCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             CCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence            0000            0     000000  0011123467899999999999999999999975

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=6.2e-35  Score=305.10  Aligned_cols=189  Identities=19%  Similarity=0.213  Sum_probs=152.2

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CC-----ceeeeeEEEecCCC
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HK-----NFVNLIGFCEEEEP  373 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~-----niv~l~g~~~~~~~  373 (592)
                      .+.+.||+|+||.||+|... ++..||||++...      .....++..|++++..++ |+     +|+++++++...+ 
T Consensus        57 ~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~------~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~-  129 (382)
T 2vx3_A           57 EIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK------KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN-  129 (382)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS------HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT-
T ss_pred             EEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc------HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC-
Confidence            34578999999999999964 6788999988532      233566778888888875 55     4999999998877 


Q ss_pred             cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc--CCCceEEecCCc
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT--EDYAAKLSDLSF  451 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~--~~~~~ki~DfGl  451 (592)
                       ..++||||++ |+|.+++.......+++..+..++.+++.||+|||.....|+||||||+|||++  .++.+||+|||+
T Consensus       130 -~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~  207 (382)
T 2vx3_A          130 -HLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGS  207 (382)
T ss_dssp             -EEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTT
T ss_pred             -ceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccC
Confidence             7799999996 599999976655679999999999999999999995433499999999999995  578899999999


Q ss_pred             chhhhhh------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccC
Q 007711          452 WNEIAMA------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLV  498 (592)
Q Consensus       452 a~~~~~~------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~  498 (592)
                      ++.....      ...+.+|+......++.++|||||||++|||+||+.||..
T Consensus       208 a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~  260 (382)
T 2vx3_A          208 SCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG  260 (382)
T ss_dssp             CEETTCCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ceecccccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            9866432      1223344444444578999999999999999999999953

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=4.5e-35  Score=302.62  Aligned_cols=246  Identities=15%  Similarity=0.183  Sum_probs=180.5

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC---CcceE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE---PFTRM  377 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~---~~~~~  377 (592)
                      +.+.||+|+||.||+|+.. +|..||||.+....    .......+.+|++++++++||||+++++++....   ....+
T Consensus        15 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   90 (353)
T 2b9h_A           15 LKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFD----KPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVY   90 (353)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECCCS----SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEE
T ss_pred             EeeEEcCCCCeEEEEEEECCCCcEEEEEeecccc----cchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEE
Confidence            4578999999999999975 68899999885322    2344567889999999999999999999987541   12579


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +|+||+. |+|.+++..   ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....
T Consensus        91 lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~~--ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~  164 (353)
T 2b9h_A           91 IIQELMQ-TDLHRVIST---QMLSDDHIQYFIYQTLRAVKVLHGSN--VIHRDLKPSNLLINSNCDLKVCDFGLARIIDE  164 (353)
T ss_dssp             EEECCCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred             EEEeccC-ccHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEEcCCCcEEEEeccccccccc
Confidence            9999997 689888863   46899999999999999999999998  99999999999999999999999999986532


Q ss_pred             hh-------------------hhhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhc--CCC
Q 007711          458 AE-------------------MAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS--GVQ  515 (592)
Q Consensus       458 ~~-------------------~~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~--~~~  515 (592)
                      ..                   ..+.+|+.. ....++.++|||||||++|||++|+.||....  ..+.......  +..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~  242 (353)
T 2b9h_A          165 SAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRD--YRHQLLLIFGIIGTP  242 (353)
T ss_dssp             ---------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCC
T ss_pred             ccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCC--cHHHHHHHHHHhCCC
Confidence            11                   112223321 22346788999999999999999999995332  2221111110  000


Q ss_pred             C----Cccc---------------cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          516 P----LQQF---------------VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       516 ~----~~~~---------------~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .    ...+               ............+..+.+++.+||+.||++|||+.|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (353)
T 2b9h_A          243 HSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE  305 (353)
T ss_dssp             CSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             chhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            0    0000               000000001123457889999999999999999999986

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=4.8e-35  Score=306.98  Aligned_cols=246  Identities=17%  Similarity=0.223  Sum_probs=176.8

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cce
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~~  376 (592)
                      .+.+.||+|+||.||+|+..++..+|+|++......         ..+|+++++.++||||+++++++.....    ...
T Consensus        43 ~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~---------~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~  113 (394)
T 4e7w_A           43 TNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRF---------KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFL  113 (394)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTS---------CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEE
T ss_pred             EEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcch---------HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEE
Confidence            345789999999999999877778999887543211         2369999999999999999999865431    136


Q ss_pred             EEEEeeCCCCCchhhcc-ccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc-CCCceEEecCCcchh
Q 007711          377 MMVFEYAPNGTLFEHIH-IKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWNE  454 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~-~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~-~~~~~ki~DfGla~~  454 (592)
                      ++||||++++.+....+ ......+++..+..++.|++.||+|||+.+  |+||||||+|||++ .++.+||+|||+++.
T Consensus       114 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~Nill~~~~~~~kL~DFG~a~~  191 (394)
T 4e7w_A          114 NLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIG--ICHRDIKPQNLLLDPPSGVLKLIDFGSAKI  191 (394)
T ss_dssp             EEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             EEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC--ccCCCCCHHHEEEcCCCCcEEEeeCCCccc
Confidence            79999998754433222 123467899999999999999999999999  99999999999999 799999999999986


Q ss_pred             hhhhh--------hhhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCC-----------
Q 007711          455 IAMAE--------MAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV-----------  514 (592)
Q Consensus       455 ~~~~~--------~~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~-----------  514 (592)
                      .....        ..+.+|+.. ....++.++|||||||++|||++|+.||....  ..+.........           
T Consensus       192 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~--~~~~l~~i~~~~g~p~~~~~~~~  269 (394)
T 4e7w_A          192 LIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGES--GIDQLVEIIKVLGTPSREQIKTM  269 (394)
T ss_dssp             CCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             ccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHhh
Confidence            53221        123333332 23347889999999999999999999995432  222221111100           


Q ss_pred             -CCCccccCCCCC------CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          515 -QPLQQFVDPTLS------SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       515 -~~~~~~~~~~~~------~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       .......-+...      .++...+.++.+++.+||+.||++|||+.|+++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (394)
T 4e7w_A          270 NPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC  321 (394)
T ss_dssp             CGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence             000000001111      012224467999999999999999999999986

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=1.2e-34  Score=294.27  Aligned_cols=237  Identities=19%  Similarity=0.271  Sum_probs=180.9

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC--CCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN--HKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~--H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.+.||+|+||.||++...++..||||.+.....   .....+.|.+|++++.+++  |+||+++++++....  ..++|
T Consensus        32 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~--~~~lv  106 (313)
T 3cek_A           32 ILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA---DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ--YIYMV  106 (313)
T ss_dssp             EEEEEECCSSEEEEEEECTTCCEEEEEEEECSSC---CHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEecCCCCEEEEEEEcCCCcEEEEEEeccccc---cccchHHHHHHHHHHHhccccCCceEEEEEEeecCC--EEEEE
Confidence            4578999999999999988899999998865432   2345678999999999997  599999999998877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      || +.+|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+||++++ +.+||+|||+++......
T Consensus       107 ~e-~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~  180 (313)
T 3cek_A          107 ME-CGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQHG--IVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDT  180 (313)
T ss_dssp             EC-CCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEET-TEEEECCCSSSCC-----
T ss_pred             Ee-cCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCcccEEEEC-CeEEEeeccccccccCcc
Confidence            99 5688999998743  46899999999999999999999998  999999999999964 899999999998653221


Q ss_pred             -----------hhhcccccCCC-----------CCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC
Q 007711          460 -----------MAATSKKLSSA-----------PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL  517 (592)
Q Consensus       460 -----------~~~~~~~~~~~-----------~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~  517 (592)
                                 ..+.+|+....           ..++.++|||||||++|||+||+.||........ ........... 
T Consensus       181 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~-~~~~~~~~~~~-  258 (313)
T 3cek_A          181 TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS-KLHAIIDPNHE-  258 (313)
T ss_dssp             ---------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHH-HHHHHHCTTSC-
T ss_pred             ccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHH-HHHHHHhcccc-
Confidence                       12233332221           3467789999999999999999999954332222 22222221110 


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                              ..++...+..+.+++.+||+.||++||++.|+++
T Consensus       259 --------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  292 (313)
T 3cek_A          259 --------IEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA  292 (313)
T ss_dssp             --------CCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             --------cCCcccchHHHHHHHHHHccCCcccCcCHHHHhc
Confidence                    0112222357889999999999999999999986

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=1.6e-34  Score=291.43  Aligned_cols=240  Identities=20%  Similarity=0.306  Sum_probs=180.3

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC------
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE------  372 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------  372 (592)
                      +.+.+.||+|+||.||+|+. .++..||||.+...      ....+.+.+|++++++++||||+++++++....      
T Consensus         8 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~------~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   81 (303)
T 1zy4_A            8 FEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT------EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPM   81 (303)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE------HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC--
T ss_pred             chhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc------HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhh
Confidence            34458899999999999996 47899999988532      234567999999999999999999999986531      


Q ss_pred             -----CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEe
Q 007711          373 -----PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS  447 (592)
Q Consensus       373 -----~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~  447 (592)
                           ....++||||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+
T Consensus        82 ~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dlkp~Nil~~~~~~~kl~  158 (303)
T 1zy4_A           82 TAVKKKSTLFIQMEYCENGTLYDLIHS-ENLNQQRDEYWRLFRQILEALSYIHSQG--IIHRDLKPMNIFIDESRNVKIG  158 (303)
T ss_dssp             ----CEEEEEEEEECCCSCBHHHHHHH-SCGGGCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTSCEEEC
T ss_pred             cccccCCceEEEEecCCCCCHHHhhhc-cccccchHHHHHHHHHHHHHHHHHHhCC--eecccCCHHhEEEcCCCCEEEe
Confidence                 1256899999999999999964 3345788899999999999999999998  9999999999999999999999


Q ss_pred             cCCcchhhhhh-----------------------hhhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCCh
Q 007711          448 DLSFWNEIAMA-----------------------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL  503 (592)
Q Consensus       448 DfGla~~~~~~-----------------------~~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~  503 (592)
                      |||+++.....                       ...+.+|+... ...++.++|||||||++|||+|   ||... .+.
T Consensus       159 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~-~~~  234 (303)
T 1zy4_A          159 DFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTG-MER  234 (303)
T ss_dssp             CCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSH-HHH
T ss_pred             eCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCc-hhH
Confidence            99998765311                       01122233222 2347889999999999999998   54211 111


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          504 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+............    .+   .++...+..+.+++.+||+.||++|||+.|+++
T Consensus       235 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          235 VNILKKLRSVSIEF----PP---DFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN  283 (303)
T ss_dssp             HHHHHHHHSTTCCC----CT---TCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHhcccccccc----Cc---cccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence            22222222211111    11   223344567899999999999999999999985

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=7.1e-35  Score=297.98  Aligned_cols=241  Identities=20%  Similarity=0.279  Sum_probs=171.7

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHH-HHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKID-TLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~-~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      +.+.||+|+||.||+|... +|..||||.+.....    .....++..|+. +++.++||||+++++++...+  ..++|
T Consensus        26 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~--~~~lv   99 (327)
T 3aln_A           26 DLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVD----EKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREG--DCWIC   99 (327)
T ss_dssp             C-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCC----HHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             ehheeccCCCEEEEEEEEcCCCCEEEEEEeecccC----chHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCC--ceEEE
Confidence            3578999999999999974 688999999864321    223445666666 777789999999999998876  67999


Q ss_pred             EeeCCCCCchhhccc---cCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          380 FEYAPNGTLFEHIHI---KESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~---~~~~~l~~~~~~~ia~~ia~gl~yLH~~-~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      |||+++ +|.+++..   .....+++..+..++.+++.||.|||+. +  |+||||||+||+++.++.+||+|||+++..
T Consensus       100 ~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~--ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~  176 (327)
T 3aln_A          100 MELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLK--IIHRDIKPSNILLDRSGNIKLCDFGISGQL  176 (327)
T ss_dssp             ECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHS--CCCSCCCGGGEEEETTTEEEECCCSSSCC-
T ss_pred             EeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCC--EeECCCCHHHEEEcCCCCEEEccCCCceec
Confidence            999975 77776642   2356789999999999999999999997 8  999999999999999999999999999765


Q ss_pred             hhhh--------hhhcccccC----CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          456 AMAE--------MAATSKKLS----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       456 ~~~~--------~~~~~~~~~----~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ....        ..+.+|+..    ....++.++||||||+++|||+||+.||...... .+.......+       ..+
T Consensus       177 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~-------~~~  248 (327)
T 3aln_A          177 VDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSV-FDQLTQVVKG-------DPP  248 (327)
T ss_dssp             -----------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC--------CCCCCS-------CCC
T ss_pred             ccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchH-HHHHHHHhcC-------CCC
Confidence            4221        123334433    2233678999999999999999999999532211 1111110000       011


Q ss_pred             CCC-CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          524 TLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       524 ~~~-~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+. ......+..+.+++.+||+.||++||++.|+++
T Consensus       249 ~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  285 (327)
T 3aln_A          249 QLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLK  285 (327)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence            111 111223457999999999999999999999875

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=4.8e-35  Score=303.91  Aligned_cols=247  Identities=16%  Similarity=0.181  Sum_probs=181.2

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC---Ccce
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE---PFTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~---~~~~  376 (592)
                      .+.+.||+|+||.||+|... ++..||||++....    .....+.+.+|++++.+++||||+++++++....   ....
T Consensus        30 ~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           30 TNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE----HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT----CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             EEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc----CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            34578999999999999864 68889999886322    1334577999999999999999999999997542   1246


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|+||++ |+|.+++..   ..+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       106 ~iv~e~~~-~~L~~~l~~---~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~  179 (364)
T 3qyz_A          106 YIVQDLME-TDLYKLLKT---QHLSNDHICYFLYQILRGLKYIHSAN--VLHRDLKPSNLLLNTTCDLKICDFGLARVAD  179 (364)
T ss_dssp             EEEEECCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEEcccC-cCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCChHhEEECCCCCEEEEeCcceEecC
Confidence            89999997 589888863   35899999999999999999999999  9999999999999999999999999998654


Q ss_pred             hhhh------------hhccccc-CCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-CCc----
Q 007711          457 MAEM------------AATSKKL-SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-PLQ----  518 (592)
Q Consensus       457 ~~~~------------~~~~~~~-~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-~~~----  518 (592)
                      ....            .+.+|+. .....++.++|||||||++|||+||+.||....  ..+.......... ...    
T Consensus       180 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~  257 (364)
T 3qyz_A          180 PDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH--YLDQLNHILGILGSPSQEDLN  257 (364)
T ss_dssp             GGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSS--GGGHHHHHHHHHCSCCHHHHH
T ss_pred             CCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCC--hHHHHHHHHHHhCCCCHHHHH
Confidence            3221            1222322 122336889999999999999999999995432  1111111110000 000    


Q ss_pred             ------------cccCCCCC---CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          519 ------------QFVDPTLS---SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       519 ------------~~~~~~~~---~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                  ........   .........+.+++.+||+.||++|||+.|+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  313 (364)
T 3qyz_A          258 CIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  313 (364)
T ss_dssp             TCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                        00000000   001123356889999999999999999999986

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=295.06  Aligned_cols=240  Identities=18%  Similarity=0.256  Sum_probs=167.7

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||.||+|... +|..||||.+......   ....+.+.++..+++.++||||+++++++...+  ..++||
T Consensus        29 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~--~~~lv~  103 (318)
T 2dyl_A           29 NLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNK---EENKRILMDLDVVLKSHDCPYIVQCFGTFITNT--DVFIAM  103 (318)
T ss_dssp             EEEEC------CEEEEEETTTCCEEEEEEEETTSCH---HHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEEEE
T ss_pred             ccceeeecCCeeEEEEEEecCCeEEEEEEecccccc---hHHHHHHHHHHHHHHhcCCCceeeEEEEEecCC--cEEEEE
Confidence            4578999999999999975 6899999988643321   223344555556788889999999999998877  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~-~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      ||+ ++.+ +.+.......+++..+..++.+++.||+|||+. +  ++||||||+||+++.++.+||+|||+++......
T Consensus       104 e~~-~~~~-~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~--i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~  179 (318)
T 2dyl_A          104 ELM-GTCA-EKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHG--VIHRDVKPSNILLDERGQIKLCDFGISGRLVDDK  179 (318)
T ss_dssp             CCC-SEEH-HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred             ecc-CCcH-HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCC--EEeCCCCHHHEEECCCCCEEEEECCCchhccCCc
Confidence            999 4444 444333345789999999999999999999985 8  9999999999999999999999999987653321


Q ss_pred             --------hhhcccccC-----CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          460 --------MAATSKKLS-----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       460 --------~~~~~~~~~-----~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                              ..+.+|+..     ....++.++|||||||++|||+||+.||.... ...+............   . +.  
T Consensus       180 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-~~~~~~~~~~~~~~~~---~-~~--  252 (318)
T 2dyl_A          180 AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCK-TDFEVLTKVLQEEPPL---L-PG--  252 (318)
T ss_dssp             -------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCC-SHHHHHHHHHHSCCCC---C-CS--
T ss_pred             cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCC-ccHHHHHHHhccCCCC---C-Cc--
Confidence                    122333332     23346788999999999999999999995433 2333333333332111   0 10  


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        ....+..+.+++.+||+.||.+||++.|+++
T Consensus       253 --~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (318)
T 2dyl_A          253 --HMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE  283 (318)
T ss_dssp             --SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             --cCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence              1122356889999999999999999999976

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=8.1e-35  Score=298.74  Aligned_cols=238  Identities=18%  Similarity=0.272  Sum_probs=164.6

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC--CcceEEEE
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE--PFTRMMVF  380 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~--~~~~~lv~  380 (592)
                      +.||+|+||.||+|... +++.||||++....         ....+....+..++||||+++++++....  ....++||
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---------~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~  105 (336)
T 3fhr_A           35 QVLGLGVNGKVLECFHRRTGQKCALKLLYDSP---------KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIM  105 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESSH---------HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             eeeeeCCCeEEEEEEECCCCCEEEEEEecCcH---------HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEE
Confidence            46999999999999975 68999999885321         11222233456679999999999986521  11468999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC---CCceEEecCCcchhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~---~~~~ki~DfGla~~~~~  457 (592)
                      ||+++|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+|||++.   ++.+||+|||+++....
T Consensus       106 e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~--ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~  183 (336)
T 3fhr_A          106 ECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHN--IAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQ  183 (336)
T ss_dssp             ECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEESCSSTTCCEEECCCTTCEEC--
T ss_pred             eccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEEecCCCceEEEeccccceeccc
Confidence            9999999999998665567999999999999999999999998  999999999999986   45699999999976543


Q ss_pred             hhhh-hcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChH--HHHHHHhcCCCCCccccCCCCCCC
Q 007711          458 AEMA-ATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE--DWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       458 ~~~~-~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      .... ...+..+.+||      ++.++||||||+++|||+||+.||........  ...........   ....+    .
T Consensus       184 ~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~---~~~~~----~  256 (336)
T 3fhr_A          184 NALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQY---GFPNP----E  256 (336)
T ss_dssp             --------------------CHHHHHHHHHHHHHHHHHHHHSSCCC------------------------CCCTT----T
T ss_pred             cccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhcccc---ccCch----h
Confidence            2211 11122334444      56789999999999999999999953322110  00000000000   00011    1


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+..+.+++.+||+.||++|||+.|+++
T Consensus       257 ~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  287 (336)
T 3fhr_A          257 WSEVSEDAKQLIRLLLKTDPTERLTITQFMN  287 (336)
T ss_dssp             STTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             hccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            1233457899999999999999999999987

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=1.8e-34  Score=298.86  Aligned_cols=254  Identities=17%  Similarity=0.219  Sum_probs=171.1

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC-----c
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP-----F  374 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~-----~  374 (592)
                      .+.+.||+|+||.||+|+.. +|..||||++......      ...+.++++.++.++||||+++++++.....     .
T Consensus        26 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~------~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   99 (360)
T 3e3p_A           26 QVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRF------RNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDI   99 (360)
T ss_dssp             EEC----------CEEEEETTTCCEEEEEEEECCTTC------CCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCE
T ss_pred             EEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccc------cHHHHHHHHHHHhcCCCCcccHHHhhhccccccccce
Confidence            34588999999999999974 6889999988543221      2346678888899999999999999865331     1


Q ss_pred             ceEEEEeeCCCCCchhhccc--cCCCCCCHHHHHHHHHHHHHHHHHhh--cCCCCeEeeCcCCCCeEEcC-CCceEEecC
Q 007711          375 TRMMVFEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMH--QLNPPIAHNYLNSSAVHLTE-DYAAKLSDL  449 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gl~yLH--~~~~~ivH~dLk~~NiLl~~-~~~~ki~Df  449 (592)
                      ..++||||+++ +|.+.+..  .....+++..+..++.+++.|+.|||  +.+  |+||||||+|||++. ++.+||+||
T Consensus       100 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~--ivH~Dlkp~NIll~~~~~~~kl~Df  176 (360)
T 3e3p_A          100 YLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVN--VCHRDIKPHNVLVNEADGTLKLCDF  176 (360)
T ss_dssp             EEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTC--CBCSCCCGGGEEEETTTTEEEECCC
T ss_pred             eEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCC--eecCcCCHHHEEEeCCCCcEEEeeC
Confidence            26899999986 55444332  24567889999999999999999999  777  999999999999997 899999999


Q ss_pred             Ccchhhhhhh--------hhhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCC------
Q 007711          450 SFWNEIAMAE--------MAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV------  514 (592)
Q Consensus       450 Gla~~~~~~~--------~~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~------  514 (592)
                      |+++......        ..+.+|+.. ....++.++|||||||++|||+||+.||....  ..+.........      
T Consensus       177 g~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~--~~~~~~~~~~~~~~~~~~  254 (360)
T 3e3p_A          177 GSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDN--SAGQLHEIVRVLGCPSRE  254 (360)
T ss_dssp             TTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHHHCCCCHH
T ss_pred             CCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCC--hHHHHHHHHHHcCCCCHH
Confidence            9998654221        123334332 22347889999999999999999999995432  222222211100      


Q ss_pred             --------CCCccccCCC-------CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHhhh
Q 007711          515 --------QPLQQFVDPT-------LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREIT  565 (592)
Q Consensus       515 --------~~~~~~~~~~-------~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~--~L~~i~  565 (592)
                              .......+..       ........+..+.+++.+||+.||++|||+.|+++  .++++.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~  322 (360)
T 3e3p_A          255 VLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELH  322 (360)
T ss_dssp             HHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGG
T ss_pred             HHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccC
Confidence                    0000000000       01112224568999999999999999999999986  344443

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=9e-35  Score=302.62  Aligned_cols=251  Identities=18%  Similarity=0.236  Sum_probs=183.9

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-----------CCceeeeeEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-----------HKNFVNLIGF  367 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-----------H~niv~l~g~  367 (592)
                      +.+.+.||+|+||.||+|+. .++..||||++...      ......+.+|++++.+++           |+||++++++
T Consensus        21 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~------~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~   94 (373)
T 1q8y_A           21 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD------KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH   94 (373)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC------HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred             EEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC------ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHH
Confidence            44568899999999999996 57889999988532      224567889999998886           8999999999


Q ss_pred             EecCC--CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEeeCcCCCCeEEc-----
Q 007711          368 CEEEE--PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLT-----  439 (592)
Q Consensus       368 ~~~~~--~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~-~~~ivH~dLk~~NiLl~-----  439 (592)
                      +...+  ....++||||+ +++|.+++.......+++..+..++.+++.||+|||+. +  |+||||||+|||++     
T Consensus        95 ~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~--ivH~Dikp~NIll~~~~~~  171 (373)
T 1q8y_A           95 FNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG--IIHTDIKPENVLMEIVDSP  171 (373)
T ss_dssp             EEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC--EECSCCSGGGEEEEEEETT
T ss_pred             hhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCC--EEecCCChHHeEEeccCCC
Confidence            87542  12468999999 89999998765556799999999999999999999997 8  99999999999994     


Q ss_pred             -CCCceEEecCCcchhhhhhh------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCC----hHHHHH
Q 007711          440 -EDYAAKLSDLSFWNEIAMAE------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS----LEDWAA  508 (592)
Q Consensus       440 -~~~~~ki~DfGla~~~~~~~------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~----~~~~~~  508 (592)
                       .++.+||+|||+++......      ..+.+|+......++.++|||||||++|||+||+.||......    ..+...
T Consensus       172 ~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~  251 (373)
T 1q8y_A          172 ENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIA  251 (373)
T ss_dssp             TTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHH
T ss_pred             cCcceEEEcccccccccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHH
Confidence             44589999999997654322      1223333333334788999999999999999999999643321    111111


Q ss_pred             HHhc---------------------CCCCCccccCCC----------CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 007711          509 DYLS---------------------GVQPLQQFVDPT----------LSSFDEEQLETLGELIKSCVRADPEKRPTMRDI  557 (592)
Q Consensus       509 ~~~~---------------------~~~~~~~~~~~~----------~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev  557 (592)
                      ....                     .......+....          ...++......+.+++.+||+.||++|||+.|+
T Consensus       252 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el  331 (373)
T 1q8y_A          252 QIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGL  331 (373)
T ss_dssp             HHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHH
T ss_pred             HHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHH
Confidence            1110                     000000000000          012456777889999999999999999999999


Q ss_pred             HH
Q 007711          558 AA  559 (592)
Q Consensus       558 ~~  559 (592)
                      ++
T Consensus       332 l~  333 (373)
T 1q8y_A          332 VN  333 (373)
T ss_dssp             HT
T ss_pred             hh
Confidence            87

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=2.8e-34  Score=296.46  Aligned_cols=249  Identities=15%  Similarity=0.203  Sum_probs=182.2

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CC-cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCc------eeeeeEEEecC
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NG-VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN------FVNLIGFCEEE  371 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~-~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~n------iv~l~g~~~~~  371 (592)
                      +.+.+.||+|+||.||+|... ++ ..||+|++...      ....+.+.+|++++++++|++      ++.+.+++...
T Consensus        21 y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~------~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~   94 (355)
T 2eu9_A           21 YEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV------GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFH   94 (355)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC------HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEET
T ss_pred             EEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc------ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeC
Confidence            345688999999999999964 34 68999988532      234567889999999987766      89999998887


Q ss_pred             CCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEE-------------
Q 007711          372 EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL-------------  438 (592)
Q Consensus       372 ~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl-------------  438 (592)
                      +  ..++||||+ +|+|.+++.......+++..+..++.|++.||+|||+.+  |+||||||+|||+             
T Consensus        95 ~--~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~--ivH~Dlkp~NIll~~~~~~~~~~~~~  169 (355)
T 2eu9_A           95 G--HMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQ--LTHTDLKPENILFVNSEFETLYNEHK  169 (355)
T ss_dssp             T--EEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEESCCCEEEEECCC-
T ss_pred             C--eEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEecccccccccccc
Confidence            7  679999999 677877776555567999999999999999999999998  9999999999999             


Q ss_pred             ------cCCCceEEecCCcchhhhhhh------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCC-hHH
Q 007711          439 ------TEDYAAKLSDLSFWNEIAMAE------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LED  505 (592)
Q Consensus       439 ------~~~~~~ki~DfGla~~~~~~~------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~-~~~  505 (592)
                            +.++.+||+|||+++......      ..+.+|+......++.++|||||||++|||+||+.||...... ...
T Consensus       170 ~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~  249 (355)
T 2eu9_A          170 SCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLV  249 (355)
T ss_dssp             CCCEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH
T ss_pred             cccccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence                  678899999999997643221      2233444444445788999999999999999999999533211 011


Q ss_pred             HHHHHhcCC--------CCCccccC--------------------C--CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHH
Q 007711          506 WAADYLSGV--------QPLQQFVD--------------------P--TLSSFDEEQLETLGELIKSCVRADPEKRPTMR  555 (592)
Q Consensus       506 ~~~~~~~~~--------~~~~~~~~--------------------~--~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~  555 (592)
                      .........        ........                    +  ............+.+++.+||+.||++|||+.
T Consensus       250 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~  329 (355)
T 2eu9_A          250 MMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLA  329 (355)
T ss_dssp             HHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             HHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHH
Confidence            111111000        00000000                    0  00011233456789999999999999999999


Q ss_pred             HHHH
Q 007711          556 DIAA  559 (592)
Q Consensus       556 ev~~  559 (592)
                      |+++
T Consensus       330 e~l~  333 (355)
T 2eu9_A          330 EALL  333 (355)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            9864

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=2.3e-34  Score=305.67  Aligned_cols=236  Identities=16%  Similarity=0.247  Sum_probs=173.6

Q ss_pred             hcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|+||+||.+...+|..||||.+....        .+.+.+|++++.++ +||||+++++++....  ..++|||
T Consensus        20 ~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~--------~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~--~~~lv~E   89 (434)
T 2rio_A           20 EKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF--------CDIALMEIKLLTESDDHPNVIRYYCSETTDR--FLYIALE   89 (434)
T ss_dssp             EEEEEECSTTCEEEEEESSSSEEEEEEEEGGG--------HHHHHHHHHHHHHHTTSTTBCCEEEEEECSS--EEEEEEC
T ss_pred             cCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH--------HHHHHHHHHHHHhccCCCCcCeEEEEEecCC--eEEEEEe
Confidence            36799999999987666689999999875421        34578899999886 8999999999998776  6799999


Q ss_pred             eCCCCCchhhccccCCCC-----CCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC-------------Cc
Q 007711          382 YAPNGTLFEHIHIKESEH-----LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-------------YA  443 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~-----l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~-------------~~  443 (592)
                      ||+ |+|.+++.......     ..+..+..|+.|++.||+|||+++  |+||||||+|||++.+             +.
T Consensus        90 ~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~  166 (434)
T 2rio_A           90 LCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK--IIHRDLKPQNILVSTSSRFTADQQTGAENLR  166 (434)
T ss_dssp             CCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEECCHHHHSCCTTCCCSCE
T ss_pred             cCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCC--ccccCCChHhEEEecCcccccccccCCCceE
Confidence            995 69999987532211     123345789999999999999998  9999999999999754             58


Q ss_pred             eEEecCCcchhhhhhh-------------hhhcccccCC-------CCCCCCCCcchhhHHHHHHHHh-CCCcccCCCCC
Q 007711          444 AKLSDLSFWNEIAMAE-------------MAATSKKLSS-------APSASLESNVYNFGVLLFEMVT-GRLPYLVDNGS  502 (592)
Q Consensus       444 ~ki~DfGla~~~~~~~-------------~~~~~~~~~~-------~~~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~  502 (592)
                      +||+|||+++......             ..+.+||...       ...++.++|||||||++|||+| |+.||......
T Consensus       167 ~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~  246 (434)
T 2rio_A          167 ILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSR  246 (434)
T ss_dssp             EEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTH
T ss_pred             EEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhh
Confidence            9999999998653221             1223333222       1347888999999999999999 99999533222


Q ss_pred             hHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          503 LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..    ....+.......    ........+.++.+++.+||+.||.+|||+.|+++
T Consensus       247 ~~----~i~~~~~~~~~~----~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          247 ES----NIIRGIFSLDEM----KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             HH----HHHHTCCCCCCC----TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HH----HHhcCCCCcccc----cccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence            21    122221111111    11124456778999999999999999999999975

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=301.17  Aligned_cols=238  Identities=23%  Similarity=0.392  Sum_probs=175.6

Q ss_pred             HHHhhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCc-hhHHHHHHHHHHHHhcC----CCCceeeeeEEEec
Q 007711          297 AACEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWP-KNLEVQFRKKIDTLSKV----NHKNFVNLIGFCEE  370 (592)
Q Consensus       297 ~~~~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~-~~~~~~f~~e~~~l~~l----~H~niv~l~g~~~~  370 (592)
                      ...+.+.+.||+|+||.||+|.. .++..||||.+......... ......+.+|++++.++    +|+||+++++++..
T Consensus        30 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~  109 (312)
T 2iwi_A           30 EAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFET  109 (312)
T ss_dssp             ---CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC--
T ss_pred             hhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEec
Confidence            33455678999999999999985 46889999998654322110 01233466789998888    89999999999987


Q ss_pred             CCCcceEEEEee-CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc-CCCceEEec
Q 007711          371 EEPFTRMMVFEY-APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSD  448 (592)
Q Consensus       371 ~~~~~~~lv~Ey-~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~-~~~~~ki~D  448 (592)
                      .+  ..++|+|| +++++|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+||+++ +++.+||+|
T Consensus       110 ~~--~~~~v~e~~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~~kl~d  183 (312)
T 2iwi_A          110 QE--GFMLVLERPLPAQDLFDYITEK--GPLGEGPSRCFFGQVVAAIQHCHSRG--VVHRDIKDENILIDLRRGCAKLID  183 (312)
T ss_dssp             -----CEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHHT--EECCCCSGGGEEEETTTTEEEECC
T ss_pred             CC--eEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCChhhEEEeCCCCeEEEEE
Confidence            76  56899999 8899999998743  45899999999999999999999998  99999999999999 889999999


Q ss_pred             CCcchhhhhhhhh-hcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          449 LSFWNEIAMAEMA-ATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       449 fGla~~~~~~~~~-~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      ||+++........ ......+.+||       .+.++||||||+++|||+||+.||...    .+.    .....     
T Consensus       184 fg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~----~~~----~~~~~-----  250 (312)
T 2iwi_A          184 FGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD----QEI----LEAEL-----  250 (312)
T ss_dssp             CSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----HHH----HHTCC-----
T ss_pred             cchhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh----HHH----hhhcc-----
Confidence            9998765432111 11122334443       245899999999999999999999421    111    11111     


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                            .++......+.+++.+||+.||++||+++|+++
T Consensus       251 ------~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~  283 (312)
T 2iwi_A          251 ------HFPAHVSPDCCALIRRCLAPKPSSRPSLEEILL  283 (312)
T ss_dssp             ------CCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             ------CCcccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                  112223457889999999999999999999986

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=3.6e-35  Score=299.27  Aligned_cols=235  Identities=21%  Similarity=0.383  Sum_probs=179.6

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCch-hHHHHHHHHHHHHhcCC--CCceeeeeEEEecCCCcc
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPK-NLEVQFRKKIDTLSKVN--HKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~-~~~~~f~~e~~~l~~l~--H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.+.||+|+||.||+|+. .++..||||.+.......... ...+.+.+|++++++++  |+||+++++++...+  .
T Consensus        45 y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~--~  122 (320)
T 3a99_A           45 YQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD--S  122 (320)
T ss_dssp             EEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS--E
T ss_pred             eEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCC--c
Confidence            34568899999999999985 568899999987654322110 11235678999999996  599999999998877  6


Q ss_pred             eEEEEeeCCC-CCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc-CCCceEEecCCcch
Q 007711          376 RMMVFEYAPN-GTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWN  453 (592)
Q Consensus       376 ~~lv~Ey~~~-gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~-~~~~~ki~DfGla~  453 (592)
                      .++|+||+.+ ++|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++ +++.+||+|||+++
T Consensus       123 ~~lv~e~~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~  198 (320)
T 3a99_A          123 FVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNCG--VLHRDIKDENILIDLNRGELKLIDFGSGA  198 (320)
T ss_dssp             EEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EEEEEEcCCCCccHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCC--cEeCCCCHHHEEEeCCCCCEEEeeCcccc
Confidence            7999999976 8999998643  46899999999999999999999999  99999999999999 78999999999987


Q ss_pred             hhhhhhhh-hcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          454 EIAMAEMA-ATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       454 ~~~~~~~~-~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ........ ......+.+||       .+.++||||||+++|||+||+.||...    .+    .......         
T Consensus       199 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~----~~----~~~~~~~---------  261 (320)
T 3a99_A          199 LLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD----EE----IIRGQVF---------  261 (320)
T ss_dssp             ECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----HH----HHHCCCC---------
T ss_pred             ccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh----hh----hhccccc---------
Confidence            65422111 11112233443       367789999999999999999999421    11    1111111         


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        .+...+..+.+++.+||+.||++||+++|+++
T Consensus       262 --~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  293 (320)
T 3a99_A          262 --FRQRVSSECQHLIRWCLALRPSDRPTFEEIQN  293 (320)
T ss_dssp             --CSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             --ccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence              11122356889999999999999999999975

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=299.99  Aligned_cols=233  Identities=18%  Similarity=0.280  Sum_probs=168.4

Q ss_pred             hcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+.||+|+||+||.....+++.||||++.....        ..+.+|+++++++ +|||||++++++....  ..++|||
T Consensus        29 ~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~--------~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~--~~~lv~E   98 (432)
T 3p23_A           29 KDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF--------SFADREVQLLRESDEHPNVIRYFCTEKDRQ--FQYIAIE   98 (432)
T ss_dssp             EEEEEECGGGCEEEEEESSSSEEEEEEECTTTE--------EECHHHHHHHHHSCCCTTBCCEEEEEEETT--EEEEEEE
T ss_pred             CCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH--------HHHHHHHHHHHhccCCCCcCeEEEEEecCC--EEEEEEE
Confidence            478999999986555456789999998854322        1256799999999 7999999999998877  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc-----CCCceEEecCCcchhhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-----EDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~-----~~~~~ki~DfGla~~~~  456 (592)
                      ||+ |+|.+++.... ..+.+.....++.|++.||+|||+.+  |+||||||+|||++     ....+||+|||+++...
T Consensus        99 ~~~-g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~  174 (432)
T 3p23_A           99 LCA-ATLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLHSLN--IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLA  174 (432)
T ss_dssp             CCS-EEHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHHHTT--CCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-
T ss_pred             CCC-CCHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHHHCc--CEeCCCCHHHEEEecCCCCCceeEEEecccceeecc
Confidence            996 69999987443 23444456789999999999999999  99999999999994     33468899999998764


Q ss_pred             hhhh------hhcccccCCCCC---------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          457 MAEM------AATSKKLSSAPS---------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       457 ~~~~------~~~~~~~~~~~~---------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      ....      ....+..+++||         ++.++|||||||++|||+| |+.||......   ...... ....... 
T Consensus       175 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~---~~~~~~-~~~~~~~-  249 (432)
T 3p23_A          175 VGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQR---QANILL-GACSLDC-  249 (432)
T ss_dssp             -----------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTH---HHHHHT-TCCCCTT-
T ss_pred             CCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHH---HHHHHh-ccCCccc-
Confidence            3211      111122333443         4568999999999999999 99999432221   111111 1111110 


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                           ..........+.+++.+||+.||++|||+.|+++
T Consensus       250 -----~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          250 -----LHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             -----SCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             -----cCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence                 1112334556889999999999999999999983

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=4.8e-34  Score=312.54  Aligned_cols=262  Identities=18%  Similarity=0.246  Sum_probs=190.2

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC----Cc
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE----PF  374 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~----~~  374 (592)
                      +.+.+.||+|+||.||+|.. .+|..||||++....    .....+.|.+|++++++++||||+++++++....    ..
T Consensus        16 Y~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~----~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~   91 (676)
T 3qa8_A           16 WEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL----SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND   91 (676)
T ss_dssp             -CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC----CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred             eEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC----CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence            44568999999999999986 468899999875321    2345677999999999999999999999976511    12


Q ss_pred             ceEEEEeeCCCCCchhhccccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc---eEEecCC
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA---AKLSDLS  450 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~---~ki~DfG  450 (592)
                      ..++||||+++|+|.+++.... ...+++..+..|+.+++.||+|||+.+  |+||||||+||+++.++.   +||+|||
T Consensus        92 ~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~g--IVHrDLKP~NILl~~~g~~~~vKL~DFG  169 (676)
T 3qa8_A           92 LPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENR--IIHRDLKPENIVLQPGPQRLIHKIIDLG  169 (676)
T ss_dssp             SCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTT--BCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred             eEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCCHHHeEeecCCCceeEEEcccc
Confidence            5689999999999999987532 336888999999999999999999998  999999999999997654   9999999


Q ss_pred             cchhhhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcC-------CC
Q 007711          451 FWNEIAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG-------VQ  515 (592)
Q Consensus       451 la~~~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~-------~~  515 (592)
                      +++......        ..+.+|+......++.++|||||||++|||+||+.||.... ....|.......       ..
T Consensus       170 ~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~-~~~~~~~~i~~~~~~~~~~~~  248 (676)
T 3qa8_A          170 YAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNW-QPVQWHGKVREKSNEHIVVYD  248 (676)
T ss_dssp             CCCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSC-HHHHSSTTCC------CCSCC
T ss_pred             cccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCccc-chhhhhhhhhcccchhhhhhh
Confidence            998764322        12333444444457889999999999999999999995321 112221110000       00


Q ss_pred             CCccc--cC---CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHH-----HHHHHHhhhCCC
Q 007711          516 PLQQF--VD---PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRD-----IAAILREITGIT  568 (592)
Q Consensus       516 ~~~~~--~~---~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~e-----v~~~L~~i~~~~  568 (592)
                      .....  ..   +.........+..+.+++.+||+.||++|||+.|     ..+.+++++...
T Consensus       249 ~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~~k  311 (676)
T 3qa8_A          249 DLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILSLK  311 (676)
T ss_dssp             CCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHHCCC
T ss_pred             hhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHHhcc
Confidence            00000  00   1112344567788999999999999999999988     556777776553

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.7e-33  Score=315.72  Aligned_cols=235  Identities=18%  Similarity=0.239  Sum_probs=179.9

Q ss_pred             hhhhcccCcCCCeEEEEEEeC--CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc---
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS--NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF---  374 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~--~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~---  374 (592)
                      +.+.+.||+|+||.||+|...  +|+.||||.+....    .......|.+|++++++++||||+++++++...+..   
T Consensus        82 y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~  157 (681)
T 2pzi_A           82 YEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG----DAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDP  157 (681)
T ss_dssp             EEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC----CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCE
T ss_pred             eEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC----CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCc
Confidence            445688999999999999975  58899999875322    134556789999999999999999999999875521   


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..++||||+++++|.+++..    .++|..+..|+.+++.||+|||+.+  |+||||||+|||++.+ .+||+|||+++.
T Consensus       158 ~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~g--iiHrDlkp~NIll~~~-~~kl~DFG~a~~  230 (681)
T 2pzi_A          158 VGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSIG--LVYNDLKPENIMLTEE-QLKLIDLGAVSR  230 (681)
T ss_dssp             EEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred             eeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHCC--CeecccChHHeEEeCC-cEEEEecccchh
Confidence            15899999999999887752    6899999999999999999999999  9999999999999986 899999999987


Q ss_pred             hhhhhhhhcccccCCCCC-----CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          455 IAMAEMAATSKKLSSAPS-----ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~-----~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      ...... ...+..+++||     .+.++|||||||++|||++|..||.....             ...    ..  ....
T Consensus       231 ~~~~~~-~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~~~~~~~~-------------~~~----~~--~~~~  290 (681)
T 2pzi_A          231 INSFGY-LYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTRNGRYV-------------DGL----PE--DDPV  290 (681)
T ss_dssp             TTCCSC-CCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCCEETTEEC-------------SSC----CT--TCHH
T ss_pred             cccCCc-cCCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCCCCccccc-------------ccc----cc--cccc
Confidence            643211 11223455665     47789999999999999999998832100             000    00  0001


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHhhh
Q 007711          530 EEQLETLGELIKSCVRADPEKRP-TMRDIAAILREIT  565 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RP-s~~ev~~~L~~i~  565 (592)
                      ......+.+++.+||+.||++|| +++++.+.|..++
T Consensus       291 ~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  327 (681)
T 2pzi_A          291 LKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVL  327 (681)
T ss_dssp             HHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHH
Confidence            12335788999999999999999 5777777777654

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=1.6e-33  Score=297.22  Aligned_cols=233  Identities=13%  Similarity=0.161  Sum_probs=161.6

Q ss_pred             hcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCC-Ccee---------eeeEEE---
Q 007711          303 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-KNFV---------NLIGFC---  368 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H-~niv---------~l~g~~---  368 (592)
                      .+.||+|+||.||+|+. .+|..||||++.......  ....+.|.+|+.+++.++| +|..         .....+   
T Consensus        83 ~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~--~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  160 (413)
T 3dzo_A           83 GTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPP--SNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDP  160 (413)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC------CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECC
T ss_pred             ecccccCCCEEEEEEEecCCCCceEEEEEecCCCcc--HHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccC
Confidence            47899999999999995 568999999876333221  1234679999999999987 3211         111111   


Q ss_pred             ---------ecCC---CcceEEEEeeCCCCCchhhcc-----ccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCc
Q 007711          369 ---------EEEE---PFTRMMVFEYAPNGTLFEHIH-----IKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL  431 (592)
Q Consensus       369 ---------~~~~---~~~~~lv~Ey~~~gsL~~~l~-----~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dL  431 (592)
                               ....   ....+++|+++ +|+|.+++.     ......++|..++.|+.|++.||+|||+.+  |+||||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--iiHrDi  237 (413)
T 3dzo_A          161 QKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG--LVHTYL  237 (413)
T ss_dssp             C---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT--EECSCC
T ss_pred             CCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCc
Confidence                     1110   11245666655 689998884     223445788899999999999999999999  999999


Q ss_pred             CCCCeEEcCCCceEEecCCcchhhhhhh-----hhhcccccC----------CCCCCCCCCcchhhHHHHHHHHhCCCcc
Q 007711          432 NSSAVHLTEDYAAKLSDLSFWNEIAMAE-----MAATSKKLS----------SAPSASLESNVYNFGVLLFEMVTGRLPY  496 (592)
Q Consensus       432 k~~NiLl~~~~~~ki~DfGla~~~~~~~-----~~~~~~~~~----------~~~~~s~ksDVwSfGvvl~El~tG~~P~  496 (592)
                      ||+|||++.++.+||+|||+++......     ..+.+||..          ....++.++|||||||++|||+||+.||
T Consensus       238 Kp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf  317 (413)
T 3dzo_A          238 RPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPN  317 (413)
T ss_dssp             CGGGEEECTTCCEEECCGGGCEETTEEECCCCCTTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccceEEEecCCeEEEEeccceeecCCccccCCCCceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCC
Confidence            9999999999999999999987654321     222333322          2223567999999999999999999999


Q ss_pred             cCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 007711          497 LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI  557 (592)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev  557 (592)
                      .....  .          .....++.. ...    .+..+.+++.+||+.||++||++.|+
T Consensus       318 ~~~~~--~----------~~~~~~~~~-~~~----~~~~~~~li~~~l~~dP~~Rpt~~~~  361 (413)
T 3dzo_A          318 TDDAA--L----------GGSEWIFRS-CKN----IPQPVRALLEGFLRYPKEDRLLPLQA  361 (413)
T ss_dssp             CTTGG--G----------SCSGGGGSS-CCC----CCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCcch--h----------hhHHHHHhh-ccc----CCHHHHHHHHHHccCChhhCcCHHHH
Confidence            53221  0          111111111 112    23569999999999999999996554

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.97  E-value=1.9e-32  Score=281.16  Aligned_cols=239  Identities=12%  Similarity=0.114  Sum_probs=172.5

Q ss_pred             HHhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCC---CchhHHHHHHHHHHHHhcCC---------CCceeeee
Q 007711          298 ACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKD---WPKNLEVQFRKKIDTLSKVN---------HKNFVNLI  365 (592)
Q Consensus       298 ~~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~---~~~~~~~~f~~e~~~l~~l~---------H~niv~l~  365 (592)
                      ..+.+.+.||+|+||.||+|+. +|..||||++.......   ......+.+.+|++++++++         |+|||++.
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~   98 (336)
T 2vuw_A           20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN   98 (336)
T ss_dssp             HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred             ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence            3455678999999999999998 78999999997654321   11223467888999888885         88888888


Q ss_pred             EEEecC----------------------------CCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHH
Q 007711          366 GFCEEE----------------------------EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLE  417 (592)
Q Consensus       366 g~~~~~----------------------------~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~  417 (592)
                      +++...                            .....++||||+++|++.+.+..   ..+++..+..|+.|++.||+
T Consensus        99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~aL~  175 (336)
T 2vuw_A           99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTASLA  175 (336)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHHHHH
T ss_pred             ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHHHHH
Confidence            765311                            01267999999999987777642   46899999999999999999


Q ss_pred             Hhh-cCCCCeEeeCcCCCCeEEcCCC--------------------ceEEecCCcchhhhhhhhhhcccccCCCCC----
Q 007711          418 HMH-QLNPPIAHNYLNSSAVHLTEDY--------------------AAKLSDLSFWNEIAMAEMAATSKKLSSAPS----  472 (592)
Q Consensus       418 yLH-~~~~~ivH~dLk~~NiLl~~~~--------------------~~ki~DfGla~~~~~~~~~~~~~~~~~~~~----  472 (592)
                      ||| +++  |+||||||+|||++.++                    .+||+|||+++.......  ..+..+++||    
T Consensus       176 ~lH~~~~--ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~~~--~gt~~y~aPE~~~g  251 (336)
T 2vuw_A          176 VAEASLR--FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIV--VFCDVSMDEDLFTG  251 (336)
T ss_dssp             HHHHHHC--CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETTEE--ECCCCTTCSGGGCC
T ss_pred             HHHHhCC--EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCCcE--EEeecccChhhhcC
Confidence            999 888  99999999999999887                    999999999987643221  1223344444    


Q ss_pred             -CCCCCcchhhHHH-HHHHHhCCCcccCCCCChHHHHH----HHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccc
Q 007711          473 -ASLESNVYNFGVL-LFEMVTGRLPYLVDNGSLEDWAA----DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRA  546 (592)
Q Consensus       473 -~s~ksDVwSfGvv-l~El~tG~~P~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~  546 (592)
                       .+.++||||||++ .+++++|..||..     ..|..    ..... ....   ...........+.++.+++.+||+.
T Consensus       252 ~~~~~~Diwsl~~~~~~~~~~g~~p~~~-----~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~s~~~~dli~~~L~~  322 (336)
T 2vuw_A          252 DGDYQFDIYRLMKKENNNRWGEYHPYSN-----VLWLHYLTDKMLKQ-MTFK---TKCNTPAMKQIKRKIQEFHRTMLNF  322 (336)
T ss_dssp             CSSHHHHHHHHHHHHHTTCTTSCCTHHH-----HHHHHHHHHHHHHT-CCCS---SCCCSHHHHHHHHHHHHHHHHGGGS
T ss_pred             CCccceehhhhhCCCCcccccccCCCcc-----hhhhhHHHHhhhhh-hccC---cccchhhhhhcCHHHHHHHHHHhcc
Confidence             2778999998877 7778889999831     11211    11111 0000   0111112345678899999999997


Q ss_pred             CCCCCCCHHHHH
Q 007711          547 DPEKRPTMRDIA  558 (592)
Q Consensus       547 dP~~RPs~~ev~  558 (592)
                      |     |++|++
T Consensus       323 d-----sa~e~l  329 (336)
T 2vuw_A          323 S-----SATDLL  329 (336)
T ss_dssp             S-----SHHHHH
T ss_pred             C-----CHHHHH
Confidence            6     888877

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.91  E-value=2e-25  Score=243.75  Aligned_cols=183  Identities=12%  Similarity=0.073  Sum_probs=121.7

Q ss_pred             cccCcCCCeEEEEEE-eCCCcEEEEEEeeecccCCC-----chhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcce
Q 007711          304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDW-----PKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~-~~~~~~vavk~~~~~~~~~~-----~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~  376 (592)
                      ...+.|++|.+.+++ +--|..++||.+........     .....++|.+|+++|+++ .|+||+++++++.+.+  ..
T Consensus       240 ~~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~--~~  317 (569)
T 4azs_A          240 NQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQ--SG  317 (569)
T ss_dssp             CC-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSS--EE
T ss_pred             hccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECC--EE
Confidence            346677777666655 34588899999875432211     123456799999999999 7999999999999887  78


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ||||||++||+|.++|..  ...++..   +|+.||+.||+|+|+++  ||||||||+|||+++++.+||+|||+++...
T Consensus       318 yLVMEyv~G~~L~d~i~~--~~~l~~~---~I~~QIl~AL~ylH~~G--IIHRDIKPeNILL~~dg~vKL~DFGlAr~~~  390 (569)
T 4azs_A          318 WLVMEKLPGRLLSDMLAA--GEEIDRE---KILGSLLRSLAALEKQG--FWHDDVRPWNVMVDARQHARLIDFGSIVTTP  390 (569)
T ss_dssp             EEEEECCCSEEHHHHHHT--TCCCCHH---HHHHHHHHHHHHHHHTT--CEESCCCGGGEEECTTSCEEECCCTTEESCC
T ss_pred             EEEEecCCCCcHHHHHHh--CCCCCHH---HHHHHHHHHHHHHHHCC--ceeccCchHhEEECCCCCEEEeecccCeeCC
Confidence            999999999999999974  3456553   58899999999999999  9999999999999999999999999998653


Q ss_pred             hh---------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcc
Q 007711          457 MA---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPY  496 (592)
Q Consensus       457 ~~---------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~  496 (592)
                      ..         +..+.+++... ..+..++|+||+|++++++.++..++
T Consensus       391 ~~~~~~~t~vGTp~YmAPE~l~-g~~~~~~d~~s~g~~~~~l~~~~~~~  438 (569)
T 4azs_A          391 QDCSWPTNLVQSFFVFVNELFA-ENKSWNGFWRSAPVHPFNLPQPWSNW  438 (569)
T ss_dssp             ---CCSHHHHHHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred             CCCccccCceechhhccHHHhC-CCCCCcccccccccchhhhccccchh
Confidence            21         22333444332 23566799999999988887765543

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.89  E-value=1.1e-23  Score=228.75  Aligned_cols=177  Identities=14%  Similarity=0.136  Sum_probs=132.9

Q ss_pred             hcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCC---chhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          303 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDW---PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~---~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.||+|+||.||+|.+ .+..+++|....+.....   .....+.|.+|++++++++||||+++..++...+  ..++|
T Consensus       341 ~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~--~~~lV  417 (540)
T 3en9_A          341 EHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLD--NKRIM  417 (540)
T ss_dssp             -------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETT--TTEEE
T ss_pred             CCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCC--ccEEE
Confidence            36899999999999965 567888887654332211   0112456899999999999999996666666655  45999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||+++|+|.+++..          +..++.|++.||+|||+++  |+||||||+|||+++  .+||+|||+++......
T Consensus       418 mE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~g--IiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~  483 (540)
T 3en9_A          418 MSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKND--VIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDE  483 (540)
T ss_dssp             EECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHTT--EECTTCCTTSEEESS--SEEECCCTTCEECCCHH
T ss_pred             EECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHCc--CccCCCCHHHEEECC--eEEEEECccCEECCCcc
Confidence            999999999999863          4579999999999999999  999999999999998  99999999998764321


Q ss_pred             h----------hhcccccCCCCC--------CCCCCcchhhHHHHHHHHhCCCcc
Q 007711          460 M----------AATSKKLSSAPS--------ASLESNVYNFGVLLFEMVTGRLPY  496 (592)
Q Consensus       460 ~----------~~~~~~~~~~~~--------~s~ksDVwSfGvvl~El~tG~~P~  496 (592)
                      .          ....+.++++||        |+..+|+||..+-.+|-+.++.+|
T Consensus       484 ~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          484 DKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             ccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence            1          112223444554        566789999999999988887777

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.83  E-value=1.2e-20  Score=187.92  Aligned_cols=135  Identities=13%  Similarity=0.077  Sum_probs=107.9

Q ss_pred             hcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCC-----Cc--------hhHHHHHHHHHHHHhcCCCCceeeeeEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKD-----WP--------KNLEVQFRKKIDTLSKVNHKNFVNLIGFCE  369 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~-----~~--------~~~~~~f~~e~~~l~~l~H~niv~l~g~~~  369 (592)
                      .+.||+|+||.||+|...+|..||+|.+.......     ..        ......|.+|++++++++  | +++.+++.
T Consensus        95 ~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~~~~~  171 (282)
T 1zar_A           95 GKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVPKVYA  171 (282)
T ss_dssp             EEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSCCEEE
T ss_pred             cCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcCeEEe
Confidence            37899999999999999779999999986432110     00        023567999999999999  5 66666554


Q ss_pred             cCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecC
Q 007711          370 EEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  449 (592)
Q Consensus       370 ~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~Df  449 (592)
                      ..   ..++||||+++|+|.+ +..        .....++.+++.|++|||+.+  |+||||||+|||++ ++.+||+||
T Consensus       172 ~~---~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~l~~lH~~g--iiHrDlkp~NILl~-~~~vkl~DF  236 (282)
T 1zar_A          172 WE---GNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEEVAKFYHRG--IVHGDLSQYNVLVS-EEGIWIIDF  236 (282)
T ss_dssp             EE---TTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHHHHHHHHTT--EECSCCSTTSEEEE-TTEEEECCC
T ss_pred             cc---ceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHHHHHHHHCC--CEeCCCCHHHEEEE-CCcEEEEEC
Confidence            43   3589999999999988 431        124469999999999999999  99999999999999 999999999


Q ss_pred             Ccchhh
Q 007711          450 SFWNEI  455 (592)
Q Consensus       450 Gla~~~  455 (592)
                      |+++..
T Consensus       237 G~a~~~  242 (282)
T 1zar_A          237 PQSVEV  242 (282)
T ss_dssp             TTCEET
T ss_pred             CCCeEC
Confidence            998755

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.74  E-value=2.2e-18  Score=169.36  Aligned_cols=139  Identities=12%  Similarity=0.113  Sum_probs=103.1

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcE--EEEEEeeecccCCC-------------------chhHHHHHHHHHHHHhcCCCC
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVE--IAVASVSVASAKDW-------------------PKNLEVQFRKKIDTLSKVNHK  359 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~--vavk~~~~~~~~~~-------------------~~~~~~~f~~e~~~l~~l~H~  359 (592)
                      +.+.||+|+||.||+|.. .+|..  ||||++........                   .......+.+|++.+.+++|+
T Consensus        51 i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~  130 (258)
T 1zth_A           51 MGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEA  130 (258)
T ss_dssp             EEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhC
Confidence            347899999999999997 68888  99998654311100                   011234688999999999887


Q ss_pred             ce--eeeeEEEecCCCcceEEEEeeCCC-C----CchhhccccCCCCCCHHHHHHHHHHHHHHHHHhh-cCCCCeEeeCc
Q 007711          360 NF--VNLIGFCEEEEPFTRMMVFEYAPN-G----TLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYL  431 (592)
Q Consensus       360 ni--v~l~g~~~~~~~~~~~lv~Ey~~~-g----sL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH-~~~~~ivH~dL  431 (592)
                      ++  ...+++  .    ..+|||||+.+ |    +|.++...     .++.....++.+++.|+.||| +++  |+||||
T Consensus       131 ~i~~p~~~~~--~----~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~~g--ivHrDl  197 (258)
T 1zth_A          131 GVSVPQPYTY--M----KNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQEAE--LVHADL  197 (258)
T ss_dssp             TCCCCCEEEE--E----TTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHTSC--EECSSC
T ss_pred             CCCCCeEEEc--C----CCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHHCC--EEeCCC
Confidence            64  334432  2    34899999942 4    55544321     123456789999999999999 998  999999


Q ss_pred             CCCCeEEcCCCceEEecCCcchhh
Q 007711          432 NSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       432 k~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      ||.|||+++  .++|+|||++...
T Consensus       198 kp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          198 SEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             STTSEEESS--SEEECCCTTCEET
T ss_pred             CHHHEEEcC--cEEEEECcccccC
Confidence            999999998  9999999998765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.65  E-value=3.3e-16  Score=177.89  Aligned_cols=65  Identities=34%  Similarity=0.507  Sum_probs=33.2

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCc
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN   67 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~   67 (592)
                      |+.|+|++|.++|.+|.+++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|.
T Consensus       492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred             CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence            34445555555555555555555555555555555555555555555555555555555544443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.63  E-value=2.5e-16  Score=178.95  Aligned_cols=113  Identities=26%  Similarity=0.435  Sum_probs=108.7

Q ss_pred             eecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCc
Q 007711            4 MCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN   83 (592)
Q Consensus         4 ~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N   83 (592)
                      ..++++.|.++|.+|..++.+++|+.|+|++|+++|.||.+++++++|+.|+|++|+++|.||..++.+++|+.|+|++|
T Consensus       611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N  690 (768)
T 3rgz_A          611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN  690 (768)
T ss_dssp             CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence            34577889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccChhhhcCCCCCEEECCCCCCCcccccc
Q 007711           84 DFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        84 ~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      +++|.||..+++++.|+.|++++|+|+|.||..
T Consensus       691 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             cccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            999999999999999999999999999999953

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.62  E-value=3.7e-16  Score=157.97  Aligned_cols=114  Identities=26%  Similarity=0.379  Sum_probs=106.3

Q ss_pred             eeecccCCccccc--cCchhhcCCCCCCEEEee-CCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEe
Q 007711            3 VMCRNLKDLCLEG--TLAPEIQSLTHIKSIILR-NNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL   79 (592)
Q Consensus         3 ~~~l~l~~~~l~g--~~p~~~~~l~~L~~l~l~-~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~   79 (592)
                      |+.|+|++|+++|  .+|+.+.++++|++|+|+ +|.+.|.+|..|+++++|++|+|++|+++|.+|..+..+++|++|+
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  131 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence            7789999999999  899999999999999999 4999999999999999999999999999999999999999999999


Q ss_pred             ccCcccccccChhhhcCCCCCEEECCCCCCCcccccc
Q 007711           80 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        80 l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      |++|.++|.+|..+.++++|++|++++|+++|.+|..
T Consensus       132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  168 (313)
T 1ogq_A          132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS  168 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred             CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH
Confidence            9999999999999999999999999999999888864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.62  E-value=5.7e-16  Score=156.63  Aligned_cols=115  Identities=21%  Similarity=0.377  Sum_probs=110.2

Q ss_pred             ceeecccCC-ccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEec
Q 007711            2 CVMCRNLKD-LCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~-~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++ |.+.|.+|..|+++++|++|+|++|.++|.+|..++++++|++|+|++|+++|.+|..+..+++|+.|+|
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            478899995 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccccChhhhcCC-CCCEEECCCCCCCcccccc
Q 007711           81 DNNDFVGSLSPEIYKLQ-VLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        81 ~~N~~~g~ip~~~~~~~-~l~~l~l~~n~l~g~~p~~  116 (592)
                      ++|+++|.+|..++++. .|+.|++++|+++|.+|..
T Consensus       157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~  193 (313)
T 1ogq_A          157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence            99999999999999998 9999999999999988864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=2.7e-15  Score=140.31  Aligned_cols=112  Identities=19%  Similarity=0.219  Sum_probs=85.5

Q ss_pred             eeecccCCccccccCch-hhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            3 VMCRNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~-~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      |+.|+|++|.|++..+. .+..+++|+.|+|++|+|++.+|..|+.+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus        31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  110 (192)
T 1w8a_A           31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY  110 (192)
T ss_dssp             CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC
T ss_pred             CCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            56777777777755443 37777888888888888887777777778888888888888877777677777788888888


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++++.+|..+..+++|+.|+|++|.|++..+
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          111 DNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            888887777777777888888888888877655

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.58  E-value=2.7e-15  Score=153.33  Aligned_cols=140  Identities=7%  Similarity=0.060  Sum_probs=96.0

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccC--------CC-chhHHHH--------HHHHHHHHhcCCCCceeee
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK--------DW-PKNLEVQ--------FRKKIDTLSKVNHKNFVNL  364 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~--------~~-~~~~~~~--------f~~e~~~l~~l~H~niv~l  364 (592)
                      +.+.||+|+||.||+|...+|+.||||+++.....        +. .......        ..+|...|.++.+.++.-.
T Consensus        99 I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~vp  178 (397)
T 4gyi_A           99 VGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVP  178 (397)
T ss_dssp             EEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC
T ss_pred             ecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            45789999999999999889999999987532110        00 0000111        2345555666544433211


Q ss_pred             eEEEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC--
Q 007711          365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY--  442 (592)
Q Consensus       365 ~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~--  442 (592)
                      .-+...    ..+|||||++++.|..+...        .....++.+++.++.|||.++  ||||||||.|||+++++  
T Consensus       179 ~p~~~~----~~~LVME~i~G~~L~~l~~~--------~~~~~l~~qll~~l~~lH~~g--IVHrDLKp~NILl~~dgd~  244 (397)
T 4gyi_A          179 EPIAQS----RHTIVMSLVDALPMRQVSSV--------PDPASLYADLIALILRLAKHG--LIHGDFNEFNILIREEKDA  244 (397)
T ss_dssp             CEEEEE----TTEEEEECCSCEEGGGCCCC--------SCHHHHHHHHHHHHHHHHHTT--EECSCCSTTSEEEEEEECS
T ss_pred             eeeecc----CceEEEEecCCccHhhhccc--------HHHHHHHHHHHHHHHHHHHCC--CcCCCCCHHHEEEeCCCCc
Confidence            111111    23799999999888765431        123467889999999999998  99999999999999876  


Q ss_pred             --------ceEEecCCcchhh
Q 007711          443 --------AAKLSDLSFWNEI  455 (592)
Q Consensus       443 --------~~ki~DfGla~~~  455 (592)
                              .+.|.||+-+...
T Consensus       245 ~d~~~~~~~~~iID~~Q~V~~  265 (397)
T 4gyi_A          245 EDPSSITLTPIIIXFPQMVSM  265 (397)
T ss_dssp             SCTTSEEEEEEECCCTTCEET
T ss_pred             ccccccccceEEEEeCCcccC
Confidence                    4899999976543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.55  E-value=4e-15  Score=165.24  Aligned_cols=113  Identities=19%  Similarity=0.210  Sum_probs=104.4

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCC-----------------------------------------------
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNN-----------------------------------------------   35 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n-----------------------------------------------   35 (592)
                      |+.|+|++++|+|.+|++|++|++|+.|+|++|                                               
T Consensus        83 V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~  162 (636)
T 4eco_A           83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI  162 (636)
T ss_dssp             EEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred             EEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHH
Confidence            778999999999999999999999999999888                                               


Q ss_pred             -------------------------------ccccCCCccccCCCCCCeeeccCCccccc-----------------CCc
Q 007711           36 -------------------------------SFSGIIPEGFGELEELEVLDFGHNNFSGP-----------------LPN   67 (592)
Q Consensus        36 -------------------------------~l~g~iP~~~~~l~~L~~l~l~~N~l~g~-----------------iP~   67 (592)
                                                     +|+| ||.+++++++|++|+|++|+|+|.                 +|.
T Consensus       163 ~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~  241 (636)
T 4eco_A          163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE  241 (636)
T ss_dssp             HHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred             HHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch
Confidence                                           4556 899999999999999999999996                 999


Q ss_pred             ccc--CCCCCCeEeccCcccccccChhhhcCCCCCEEECCCCC-CCc-ccccc
Q 007711           68 DLG--INHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQ-LSS-AAKKE  116 (592)
Q Consensus        68 ~~~--~~~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~-l~g-~~p~~  116 (592)
                      .++  .+++|++|+|++|++.|.+|..++++++|+.|++++|+ ++| .+|..
T Consensus       242 ~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~  294 (636)
T 4eco_A          242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD  294 (636)
T ss_dssp             CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH
T ss_pred             hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH
Confidence            999  99999999999999999999999999999999999998 999 78853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=3.9e-15  Score=169.08  Aligned_cols=113  Identities=20%  Similarity=0.240  Sum_probs=107.0

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEe-eCCccccC-----------------------------------------
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIIL-RNNSFSGI-----------------------------------------   40 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l-~~n~l~g~-----------------------------------------   40 (592)
                      |+.|+|++|+|+|.+|++|++|++|+.|+| ++|.++|.                                         
T Consensus       325 V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~  404 (876)
T 4ecn_A          325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL  404 (876)
T ss_dssp             EEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred             EEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence            788999999999999999999999999999 88877776                                         


Q ss_pred             -----------------------------------CCccccCCCCCCeeeccCCcccc-----------------cCCcc
Q 007711           41 -----------------------------------IPEGFGELEELEVLDFGHNNFSG-----------------PLPND   68 (592)
Q Consensus        41 -----------------------------------iP~~~~~l~~L~~l~l~~N~l~g-----------------~iP~~   68 (592)
                                                         ||..|+++++|+.|+|++|+|+|                 .||..
T Consensus       405 ~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~  484 (876)
T 4ecn_A          405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE  484 (876)
T ss_dssp             HHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred             HHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh
Confidence                                               89999999999999999999999                 59999


Q ss_pred             cc--CCCCCCeEeccCcccccccChhhhcCCCCCEEECCCCC-CCc-cccc
Q 007711           69 LG--INHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQ-LSS-AAKK  115 (592)
Q Consensus        69 ~~--~~~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~-l~g-~~p~  115 (592)
                      ++  .+++|+.|+|++|++.|.+|..++++++|+.|+|++|+ |+| .+|.
T Consensus       485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~  535 (876)
T 4ecn_A          485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA  535 (876)
T ss_dssp             CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred             hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH
Confidence            88  99999999999999999999999999999999999998 999 8885

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.55  E-value=1.2e-14  Score=138.86  Aligned_cols=114  Identities=15%  Similarity=0.119  Sum_probs=102.2

Q ss_pred             eeecccCCccccccCch-hhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            3 VMCRNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~-~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      ++.|+|++|.|++..|. .+..+++|+.|+|++|+|++..|..|+.+++|+.|+|++|++++..|..|..+++|+.|+|+
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            57889999999987664 48899999999999999998888889999999999999999997777778999999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      +|++++..|..+..+++|+.|+|++|+|++..|..
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  148 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA  148 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence            99999988999999999999999999999887753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.54  E-value=3.4e-14  Score=138.67  Aligned_cols=112  Identities=21%  Similarity=0.205  Sum_probs=91.3

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      ++.|+|++|++++..|..+.++++|+.|+|++|.|++..|..|..+++|++|+|++|++++..|..+..+++|+.|+|++
T Consensus        37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  116 (251)
T 3m19_A           37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG  116 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCC
Confidence            66788888888877777788888888888888888887777788888888888888888866666778888888888888


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      |++++..+..+.++++|+.|+|++|+|++..+
T Consensus       117 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  148 (251)
T 3m19_A          117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA  148 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence            88886666667788888888888888887655

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.53  E-value=1.7e-14  Score=146.63  Aligned_cols=111  Identities=14%  Similarity=0.105  Sum_probs=77.7

Q ss_pred             eeecccCCccccccCchhhcC---------CCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQS---------LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINH   73 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~---------l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~   73 (592)
                      |+.|+|++|++.|.+|..+..         +++|+.|+|++|.++ .+|..++++++|+.|+|++|+++ .+|..+..++
T Consensus       152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~  229 (328)
T 4fcg_A          152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP  229 (328)
T ss_dssp             CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCT
T ss_pred             CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCC
Confidence            566777777777777766554         777777777777776 66777777777777777777776 3666666777


Q ss_pred             CCCeEeccCcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           74 SLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        74 ~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|+.|+|++|++.+.+|..++++++|+.|++++|++.+.+|.
T Consensus       230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred             CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence            777777777777777777777777777777777777776664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.53  E-value=1.5e-14  Score=147.08  Aligned_cols=111  Identities=21%  Similarity=0.253  Sum_probs=95.2

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccC---------C
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGI---------N   72 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~---------~   72 (592)
                      .|+.|+|++|.++ .+|..++++++|+.|+|++|.++ .+|..++++++|++|+|++|++.|.+|..+..         +
T Consensus       105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            4678889999988 88888899999999999999998 88888999999999999998888888887764         8


Q ss_pred             CCCCeEeccCcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           73 HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        73 ~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      ++|+.|+|++|+++ .+|..++++++|+.|++++|++++..+.
T Consensus       183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~  224 (328)
T 4fcg_A          183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA  224 (328)
T ss_dssp             TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred             CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchh
Confidence            88888888888888 8888888888888888888888875443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.52  E-value=3.2e-14  Score=135.95  Aligned_cols=108  Identities=15%  Similarity=0.212  Sum_probs=62.2

Q ss_pred             ecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCc-cccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCc
Q 007711            5 CRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN   83 (592)
Q Consensus         5 ~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~-~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N   83 (592)
                      .+++++|.|+ .+|..+.  ..++.|+|++|+|++..|. .|+.+++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus        15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            3555566655 3555443  2345666666666655442 3556666666666666666544455666666666666666


Q ss_pred             ccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           84 DFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        84 ~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      ++++..|..+..+++|++|+|++|++++..|.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  123 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGND  123 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence            66655555566666666666666666655443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=1.9e-14  Score=128.42  Aligned_cols=111  Identities=19%  Similarity=0.161  Sum_probs=101.7

Q ss_pred             ceeecccCCcccc-ccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~-g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++|.++ |.+|..+..+++|+.|+|++|.+++.  ..++.+++|++|+|++|++++.+|..+..+++|+.|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            3788999999998 89999999999999999999999976  77899999999999999999889988888999999999


Q ss_pred             cCcccccc-cChhhhcCCCCCEEECCCCCCCcccc
Q 007711           81 DNNDFVGS-LSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        81 ~~N~~~g~-ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      ++|.+++. .|..+..+++|++|++++|++++..+
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            99999983 56889999999999999999997654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=6.2e-14  Score=133.96  Aligned_cols=113  Identities=22%  Similarity=0.251  Sum_probs=98.7

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCc-cccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~-~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|+++ .+|. .|..+++|+.|+|
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEEC
Confidence            3678899999998766668899999999999999999888999999999999999999999 5554 4678999999999


Q ss_pred             cCcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           81 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        81 ~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      ++|++++..|..+..+++|+.|+|++|+|++..+.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence            99999988888899999999999999999987653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=7.8e-14  Score=128.38  Aligned_cols=112  Identities=16%  Similarity=0.156  Sum_probs=73.5

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|++++..+..+..+++|+.|+|++|+|++..|..++.+++|+.|+|++|++++..|..+..+++|+.|+|++
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  109 (177)
T 2o6r_A           30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT  109 (177)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcC
Confidence            55667777777654444566777777777777777755555566777777777777777754445566677777777777


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      |++++..+..+..+++|+.|++++|.+++..|
T Consensus       110 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          110 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            77764444345667777777777777776655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.49  E-value=8.2e-14  Score=130.19  Aligned_cols=103  Identities=17%  Similarity=0.262  Sum_probs=54.9

Q ss_pred             cccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCccc
Q 007711            6 RNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF   85 (592)
Q Consensus         6 l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~   85 (592)
                      +++++|+|+ .+|..+.  ++|+.|+|++|+|+ .+|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++
T Consensus        15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            445555554 3454332  35555555555555 4555555555555555555555544444455555555555555555


Q ss_pred             ccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           86 VGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        86 ~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      ++..|..|.++++|+.|+|++|+|++.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~  117 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVV  117 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCee
Confidence            554444555555555555555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.49  E-value=9.5e-14  Score=133.55  Aligned_cols=112  Identities=23%  Similarity=0.251  Sum_probs=96.8

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++..|..+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus        41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  120 (229)
T 3e6j_A           41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC  120 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence            47789999999998888889999999999999999976555667889999999999999996555667889999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|+++ .+|..+..+++|+.|+|++|+|++..+
T Consensus       121 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A          121 CNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             SSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred             CCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence            99998 889889999999999999999987654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=1.1e-13  Score=126.43  Aligned_cols=109  Identities=18%  Similarity=0.205  Sum_probs=98.3

Q ss_pred             eecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCc
Q 007711            4 MCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN   83 (592)
Q Consensus         4 ~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N   83 (592)
                      +.+++++|+|+. +|..+.  ++|+.|+|++|+|++..|..|+.+++|++|+|++|+|++-.|..|..+++|+.|+|++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            568999999984 888774  89999999999999999999999999999999999999666566789999999999999


Q ss_pred             ccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           84 DFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        84 ~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|++..|..+.++++|+.|+|++|.|++..+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~  120 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD  120 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence            99987777799999999999999999987653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.47  E-value=2.7e-14  Score=158.55  Aligned_cols=104  Identities=14%  Similarity=0.168  Sum_probs=95.0

Q ss_pred             CccccccCchhhcCCCCCCEEEeeCCccccC-----------------CCcccc--CCCCCCeeeccCCcccccCCcccc
Q 007711           10 DLCLEGTLAPEIQSLTHIKSIILRNNSFSGI-----------------IPEGFG--ELEELEVLDFGHNNFSGPLPNDLG   70 (592)
Q Consensus        10 ~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~-----------------iP~~~~--~l~~L~~l~l~~N~l~g~iP~~~~   70 (592)
                      +|+|+| ||++|+++++|++|+|++|.|+|.                 +|..++  ++++|++|+|++|++.|.+|..++
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            457788 999999999999999999999996                 999999  999999999999999999999999


Q ss_pred             CCCCCCeEeccCcc-ccc-ccChhhhcC------CCCCEEECCCCCCCccccc
Q 007711           71 INHSLTILLLDNND-FVG-SLSPEIYKL------QVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        71 ~~~~L~~l~l~~N~-~~g-~ip~~~~~~------~~l~~l~l~~n~l~g~~p~  115 (592)
                      .+++|+.|+|++|+ ++| .+|..++++      ++|+.|++++|+++ .+|.
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~  322 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV  322 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence            99999999999998 999 899988887      89999999999999 6775

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.47  E-value=1.9e-13  Score=133.32  Aligned_cols=114  Identities=22%  Similarity=0.195  Sum_probs=103.4

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.|++..|..+..+++|+.|+|++|+|++..|..|..+++|++|+|++|++++..|..+..+++|+.|+|+
T Consensus        60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN  139 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence            47889999999999888889999999999999999998888889999999999999999996555667899999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|++++..|..+..+++|+.|+|++|+|++..+.
T Consensus       140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A          140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence            9999977777899999999999999999987663

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.47  E-value=6.8e-14  Score=152.46  Aligned_cols=108  Identities=21%  Similarity=0.210  Sum_probs=102.4

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|.|++ +|. |+.+++|+.|+|++|.|+ .+|..++++++|+.|+|++|+|++ +| .++.+++|+.|+|++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            6789999999997 786 999999999999999999 899999999999999999999996 88 899999999999999


Q ss_pred             ccccccc-ChhhhcCCCCCEEECCCCCCCccccc
Q 007711           83 NDFVGSL-SPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        83 N~~~g~i-p~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      |++++.+ |..++.+++|+.|+|++|+|++.+|.
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            9999988 99999999999999999999998774

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.46  E-value=1.8e-13  Score=127.85  Aligned_cols=110  Identities=20%  Similarity=0.277  Sum_probs=100.1

Q ss_pred             eecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCc-cccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            4 MCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         4 ~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~-~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      +.+++++|+|+ .+|..+..  +|+.|+|++|+|++..|. .++.+++|++|+|++|++++..|..|..+++|+.|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            46789999995 78987754  999999999999977665 489999999999999999998899999999999999999


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcccccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      |++++..|..+.++++|+.|+|++|+|++.+|..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  121 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS  121 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH
Confidence            9999999988999999999999999999988753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.46  E-value=3.2e-13  Score=133.45  Aligned_cols=110  Identities=23%  Similarity=0.223  Sum_probs=67.2

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|.+++ + +.+..+++|+.|+|++|.+++..|..++.+++|++|+|++|++++..|..+..+++|+.|+|++
T Consensus        65 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  142 (272)
T 3rfs_A           65 VRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH  142 (272)
T ss_dssp             CCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence            4556666666654 2 3566666666666666666655555556666666666666666654444556666666666666


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      |++++..|..+.++++|+.|++++|++++..+
T Consensus       143 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A          143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            66665555555666666666666666665444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.46  E-value=1.4e-13  Score=131.58  Aligned_cols=113  Identities=15%  Similarity=0.170  Sum_probs=104.0

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++..|..|..+++|+.|+|++|.|++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|+
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence            47899999999999889999999999999999999996555567899999999999999998889999999999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++++..+..+..+++|+.|+|++|.+.....
T Consensus       137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            999998888889999999999999999987543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=2.1e-13  Score=125.14  Aligned_cols=108  Identities=19%  Similarity=0.236  Sum_probs=96.1

Q ss_pred             eecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCc
Q 007711            4 MCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN   83 (592)
Q Consensus         4 ~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N   83 (592)
                      ..+++++|+|+ .+|..+.  ++|+.|+|++|+|++..|..|+.+++|++|+|++|+|++-.+..|..+++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            46789999995 7898775  89999999999999999999999999999999999999644445689999999999999


Q ss_pred             ccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           84 DFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        84 ~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      ++++..+..+..+++|+.|+|++|.|....+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            9997666569999999999999999998755

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.45  E-value=1e-13  Score=126.33  Aligned_cols=111  Identities=17%  Similarity=0.160  Sum_probs=100.3

Q ss_pred             ceeecccCCcccc-ccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~-g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++|.++ |.+|..+..+++|+.|+|++|.+++.  ..++.+++|+.|+|++|++++.+|..+..+++|+.|+|
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            4788999999998 89999999999999999999999976  77899999999999999999888888888999999999


Q ss_pred             cCcccccc-cChhhhcCCCCCEEECCCCCCCcccc
Q 007711           81 DNNDFVGS-LSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        81 ~~N~~~g~-ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      ++|.+++. .+..+..+++|+.|++++|.+++..+
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            99999874 33788999999999999999987644

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.44  E-value=2.9e-13  Score=133.72  Aligned_cols=115  Identities=21%  Similarity=0.201  Sum_probs=103.1

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++..|..+..+++|+.|+|++|++++..|..++.+++|++|+|++|++++..|..+..+++|+.|+|+
T Consensus        86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A           86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS  165 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence            47889999999998777778999999999999999998888888999999999999999997666677899999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      +|++++..|..+..+++|+.|++++|++++..|..
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (272)
T 3rfs_A          166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV  200 (272)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH
Confidence            99999877777899999999999999999877743

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.43  E-value=4e-13  Score=127.06  Aligned_cols=114  Identities=18%  Similarity=0.191  Sum_probs=100.2

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            37889999999997655668999999999999999997766678999999999999999996555667899999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|++++..+..+.++++|+.|++++|++++..+.
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence            9999977777789999999999999999976654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.43  E-value=3.7e-13  Score=129.40  Aligned_cols=112  Identities=20%  Similarity=0.170  Sum_probs=101.7

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.|++..+..+..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus        65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  143 (229)
T 3e6j_A           65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD  143 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence            4789999999997544455799999999999999999877777899999999999999999 899999999999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++++..+..+..+++|+.|++++|.+++..+
T Consensus       144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            999997777779999999999999999998765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.43  E-value=4.9e-13  Score=126.42  Aligned_cols=108  Identities=22%  Similarity=0.177  Sum_probs=79.4

Q ss_pred             ecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCcc
Q 007711            5 CRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND   84 (592)
Q Consensus         5 ~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~   84 (592)
                      .++.++++++ .+|..+  .++|+.|+|++|++++..+..++.+++|+.|+|++|++++..+..+..+++|++|+|++|+
T Consensus        11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            3456666665 456544  4578888888888886666667788888888888888885444456778888888888888


Q ss_pred             cccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           85 FVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        85 ~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +++..+..+.++++|++|++++|++++..+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  118 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDG  118 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHh
Confidence            8865555677888888888888888876553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.42  E-value=1.1e-13  Score=157.31  Aligned_cols=112  Identities=15%  Similarity=0.165  Sum_probs=105.0

Q ss_pred             ceeecccCCccccc-----------------cCchhhc--CCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCc-c
Q 007711            2 CVMCRNLKDLCLEG-----------------TLAPEIQ--SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN-F   61 (592)
Q Consensus         2 ~~~~l~l~~~~l~g-----------------~~p~~~~--~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~-l   61 (592)
                      .|+.|+|++|.|+|                 .+|++++  ++++|+.|+|++|++.|.+|..|+++++|+.|+|++|+ +
T Consensus       449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l  528 (876)
T 4ecn_A          449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI  528 (876)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence            47889999999999                 5999988  99999999999999999999999999999999999998 9


Q ss_pred             cc-cCCccccCCC-------CCCeEeccCcccccccCh--hhhcCCCCCEEECCCCCCCccccc
Q 007711           62 SG-PLPNDLGINH-------SLTILLLDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        62 ~g-~iP~~~~~~~-------~L~~l~l~~N~~~g~ip~--~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +| .+|..++.++       +|+.|+|++|+++ .+|.  .++++++|+.|+|++|+++ .+|.
T Consensus       529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~  590 (876)
T 4ecn_A          529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEA  590 (876)
T ss_dssp             CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCC
T ss_pred             ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchh
Confidence            99 9998777665       9999999999999 9999  9999999999999999999 7884

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.42  E-value=1.2e-13  Score=155.32  Aligned_cols=110  Identities=25%  Similarity=0.325  Sum_probs=93.7

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|.+. .||+.+.++++|+.|+|++|.|+ .||..|+++++|++|+|++|+|+ .||..++.+++|+.|+|++
T Consensus       226 L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~  302 (727)
T 4b8c_D          226 WHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD  302 (727)
T ss_dssp             CCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred             CcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence            667888888887 78888888888888888888888 88888888888888888888888 8888888888888888888


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcccccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      |.|+ .||..|+++++|+.|+|++|.|+|.+|..
T Consensus       303 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          303 NMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             SCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence            8886 78888888888888888888888887753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.41  E-value=9.8e-13  Score=130.79  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=98.1

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCc-cccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNS-FSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~-l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++|.+++..|..+..+++|+.|+|++|. +.+..|..+..+++|+.|++++|++++..|..+..+++|+.|+|
T Consensus        57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  136 (285)
T 1ozn_A           57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL  136 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEEC
Confidence            47788999999998778889999999999999997 77666888899999999999999999877888888999999999


Q ss_pred             cCcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           81 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        81 ~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      ++|++++..+..+.++++|+.|++++|++++..+.
T Consensus       137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A          137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence            99999877666788899999999999998865553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.40  E-value=1.3e-12  Score=129.92  Aligned_cols=114  Identities=18%  Similarity=0.131  Sum_probs=104.7

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCc-ccccCCccccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN-FSGPLPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~-l~g~iP~~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++|.+++..+..+.++++|+.|+|++|.+.+..|..++.+++|++|+|++|. +.+..|..+..+++|+.|+|
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            37889999999998777789999999999999999999889999999999999999998 77555888999999999999


Q ss_pred             cCcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           81 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        81 ~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      ++|++++..|..+.++++|++|++++|++++..+.
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  147 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD  147 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence            99999998888999999999999999999976654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.40  E-value=6.5e-13  Score=136.93  Aligned_cols=112  Identities=22%  Similarity=0.192  Sum_probs=99.4

Q ss_pred             eeecccCCccccccCchhhc-CCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            3 VMCRNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~-~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      ++.|+|++|.|++..+..+. ++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            67899999999986666676 89999999999999998888889999999999999999997666778899999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++++..|..|.++++|+.|+|++|+|++..+
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  153 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV  153 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence            999998888899999999999999999997544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.39  E-value=1.5e-12  Score=121.92  Aligned_cols=110  Identities=16%  Similarity=0.150  Sum_probs=97.8

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.++ .+| .+..+++|+.|+|++|.+.  .+..+..+++|++|++++|++++..|..+..+++|+.|+|+
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            3788999999998 677 7999999999999999665  45578999999999999999999889999999999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|.+++..|..++.+++|+.|++++|++.+.+|.
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~  154 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP  154 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccHh
Confidence            9999999999999999999999999985555553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.39  E-value=1.4e-12  Score=129.97  Aligned_cols=111  Identities=19%  Similarity=0.170  Sum_probs=90.7

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .++.|+|++|.+++..|..+..+++|+.|+|++|.|++. |.. +.+++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS  108 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence            367788888888877777888888888888888888864 433 77888888888888887 788888888888888888


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|++++..|..|.++++|+.|+|++|++++..+.
T Consensus       109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~  142 (290)
T 1p9a_G          109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPG  142 (290)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CCcCcccCHHHHcCCCCCCEEECCCCCCCccChh
Confidence            8888877777788888888888888888876553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.39  E-value=2.3e-12  Score=127.06  Aligned_cols=114  Identities=20%  Similarity=0.155  Sum_probs=97.5

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .++.|+|++|.+++..+..|.++++|+.|+|++|.++...+..|..+++|++|+|++|++++..+..+..+++|+.|+|+
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            36789999999987655689999999999999999996555556889999999999999996555667889999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|++++..|..+..+++|++|++++|++++..+.
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  151 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG  151 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence            9999988887889999999999999999876554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.38  E-value=2.9e-12  Score=126.39  Aligned_cols=110  Identities=21%  Similarity=0.261  Sum_probs=93.8

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCc-cccCCCCCCeEecc
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTILLLD   81 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~-~~~~~~~L~~l~l~   81 (592)
                      ++.+++++++|+ .+|..+.  ++|+.|+|++|++++..|..|+.+++|++|+|++|+++ .+|. .+..+++|+.|+|+
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence            456889999998 5887665  68999999999999877778999999999999999998 4554 45789999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      +|++++..+..+..+++|++|++++|++++..+..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  128 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV  128 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHH
Confidence            99999776677889999999999999999876643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.38  E-value=2.9e-13  Score=136.56  Aligned_cols=109  Identities=14%  Similarity=0.223  Sum_probs=79.1

Q ss_pred             eeecccCCccc-cccCchhhc-------CCCCCCEEEeeCCccccCCCccc--cCCCCCCeeeccCCcccccCCccccCC
Q 007711            3 VMCRNLKDLCL-EGTLAPEIQ-------SLTHIKSIILRNNSFSGIIPEGF--GELEELEVLDFGHNNFSGPLPNDLGIN   72 (592)
Q Consensus         3 ~~~l~l~~~~l-~g~~p~~~~-------~l~~L~~l~l~~n~l~g~iP~~~--~~l~~L~~l~l~~N~l~g~iP~~~~~~   72 (592)
                      |+.|+|++|.+ .+.+|..+.       ++++|+.|+|++|.++|.+|..+  +.+++|++|+|++|++++. |..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            45677777777 556776665       67777777777777777777765  6777777777777777765 6666555


Q ss_pred             -----CCCCeEeccCcccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           73 -----HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        73 -----~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                           ++|++|+|++|++++..|..++++++|++|++++|+++|.
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence                 7777777777777776667777777777777777777665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.38  E-value=1.4e-12  Score=131.10  Aligned_cols=113  Identities=17%  Similarity=0.181  Sum_probs=90.3

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCC-ccccCCCCCCeeeccCCcccccCCccccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP-EGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP-~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++|.++ .+|..+..+++|+.|+|++|.+.+..+ ..+..+++|++|++++|++.+..|..+..+++|+.|+|
T Consensus        79 ~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A           79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             CCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred             ccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence            3677888888887 477778888888888888888886554 56778888888888888888877777888888888888


Q ss_pred             cCccccc-ccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           81 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        81 ~~N~~~g-~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      ++|.+++ .+|..+..+++|+.|++++|++++..|.
T Consensus       158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  193 (306)
T 2z66_A          158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT  193 (306)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH
Confidence            8888887 5777788888888888888888876554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.37  E-value=8.8e-13  Score=140.22  Aligned_cols=114  Identities=20%  Similarity=0.172  Sum_probs=106.5

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++.+|..+..+++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            47889999999999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|++++..|..+..+++|++|++++|++++..+.
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  389 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG  389 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCcccccChhhccccccccEEECCCCccccCCHh
Confidence            9999999999999999999999999999986553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.37  E-value=1.1e-12  Score=139.42  Aligned_cols=91  Identities=16%  Similarity=0.132  Sum_probs=69.0

Q ss_pred             CCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCEEEC
Q 007711           25 THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV  104 (592)
Q Consensus        25 ~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l  104 (592)
                      ++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++..|..+..+++|+.|+|++|.+++..|..+.++++|++|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            56777777777777777777777777777777777777777777777777777777777777766777777777777777


Q ss_pred             CCCCCCccccc
Q 007711          105 DEGQLSSAAKK  115 (592)
Q Consensus       105 ~~n~l~g~~p~  115 (592)
                      ++|++++..|.
T Consensus       355 s~N~l~~~~~~  365 (455)
T 3v47_A          355 SYNHIRALGDQ  365 (455)
T ss_dssp             CSSCCCEECTT
T ss_pred             CCCcccccChh
Confidence            77777776554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.36  E-value=1.2e-12  Score=131.50  Aligned_cols=113  Identities=18%  Similarity=0.146  Sum_probs=96.3

Q ss_pred             ceeecccCCccccccCc-hhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccc-cCCccccCCCCCCeEe
Q 007711            2 CVMCRNLKDLCLEGTLA-PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTILL   79 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p-~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g-~iP~~~~~~~~L~~l~   79 (592)
                      .|+.|+|++|.+++..+ ..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|.+++ .+|..+..+++|+.|+
T Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            36788899998886544 578888999999999999988888888888999999999999887 5788888889999999


Q ss_pred             ccCcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           80 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        80 l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      |++|++++..|..+.++++|+.|++++|++++..+
T Consensus       182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  216 (306)
T 2z66_A          182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT  216 (306)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred             CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh
Confidence            99999988888888888999999999999887654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.36  E-value=1.7e-12  Score=128.33  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=104.9

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..+.++++|+.|++++|++++..+..+..+++|+.|+|+
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  132 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  132 (276)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred             CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence            47889999999998777789999999999999999999888999999999999999999997777789999999999999


Q ss_pred             Cccccc-ccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g-~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|++++ .+|..+.++++|+.|++++|++++..+.
T Consensus       133 ~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A          133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            999987 5799999999999999999999987654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.35  E-value=2.2e-12  Score=120.42  Aligned_cols=112  Identities=21%  Similarity=0.216  Sum_probs=103.4

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.|+ .+|..+..+++|+.|+|++|.|++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|+
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            4788999999998 799999999999999999999999888899999999999999999998888889999999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++++..+..+..+++|+.|++++|.+.+...
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            999996666678899999999999999987644

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.34  E-value=7.3e-13  Score=133.63  Aligned_cols=109  Identities=20%  Similarity=0.250  Sum_probs=100.1

Q ss_pred             ceeecccCCccccccCchhh--cCCCCCCEEEeeCCccccCCCccccCC-----CCCCeeeccCCcccccCCccccCCCC
Q 007711            2 CVMCRNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIPEGFGEL-----EELEVLDFGHNNFSGPLPNDLGINHS   74 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~--~~l~~L~~l~l~~n~l~g~iP~~~~~l-----~~L~~l~l~~N~l~g~iP~~~~~~~~   74 (592)
                      .|+.|+|++|.++|.+|..+  ..+++|+.|+|++|++++. |..++.+     ++|++|+|++|++++..|..+..+++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            47889999999999999987  9999999999999999987 8888887     99999999999999888899999999


Q ss_pred             CCeEeccCcccccc--cChhh--hcCCCCCEEECCCCCCCc
Q 007711           75 LTILLLDNNDFVGS--LSPEI--YKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        75 L~~l~l~~N~~~g~--ip~~~--~~~~~l~~l~l~~n~l~g  111 (592)
                      |+.|+|++|+++|.  +|..+  .++++|++|++++|++++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~  215 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET  215 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc
Confidence            99999999999987  45555  899999999999999984

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.34  E-value=1.7e-12  Score=143.74  Aligned_cols=114  Identities=16%  Similarity=0.064  Sum_probs=99.7

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .++.|+|++|.|++-.|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|++-.|..|..+++|++|+|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            36889999999997666789999999999999999998778889999999999999999996555678999999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcc-ccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA-AKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~-~p~  115 (592)
                      +|++++..+..|+++++|++|++++|++++. +|.
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~  167 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE  167 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCch
Confidence            9999977667799999999999999999763 443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.33  E-value=2.9e-12  Score=126.78  Aligned_cols=114  Identities=16%  Similarity=0.064  Sum_probs=104.8

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..+..+++|++|+|++|++++..|..+..+++|+.|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            37889999999998777789999999999999999998888899999999999999999998888899999999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcc-ccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA-AKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~-~p~  115 (592)
                      +|++++..+..++++++|++|++++|++++. +|.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~  143 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE  143 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCch
Confidence            9999987777899999999999999999873 464

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.33  E-value=4.1e-12  Score=126.69  Aligned_cols=109  Identities=19%  Similarity=0.156  Sum_probs=69.5

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|.|++ +|.. +.+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++
T Consensus        57 L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~  133 (290)
T 1p9a_G           57 LTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG  133 (290)
T ss_dssp             CCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred             CCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence            5666777777664 3332 56666677777776666 5666666666666777777766654445566666666667766


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      |++++..|..+..+++|+.|+|++|+|++..+
T Consensus       134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  165 (290)
T 1p9a_G          134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (290)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             CCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence            66665555555666666666666666664433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.33  E-value=3.9e-12  Score=136.18  Aligned_cols=114  Identities=20%  Similarity=0.169  Sum_probs=102.9

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .++.|+|++|.+++..|..|.++++|+.|+|++|.+++..|..|+++++|++|+|++|++++-.+..|..+++|+.|+|+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            46789999999998888899999999999999999999889999999999999999999995444567899999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|++++..|..+.++++|+.|++++|++++..+.
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  146 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR  146 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChh
Confidence            9999999999999999999999999999887664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.32  E-value=3.5e-12  Score=140.82  Aligned_cols=111  Identities=17%  Similarity=0.122  Sum_probs=63.0

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCC-ccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP-EGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP-~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      |+.|+|++|.+++ +|..+..+++|+.|+|++|.+.+..| ..+..+++|+.|++++|++++.+|..+..+++|+.|+|+
T Consensus       378 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  456 (606)
T 3vq2_A          378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA  456 (606)
T ss_dssp             CCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             ccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence            4555566665553 44555555556666666555555555 455555555555555555555555555555555555555


Q ss_pred             Ccccccc-cChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGS-LSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~-ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|.+++. +|..+..+++|+.|++++|++++.+|
T Consensus       457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  490 (606)
T 3vq2_A          457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW  490 (606)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             CCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence            5555552 45555555555555555555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=2.7e-12  Score=131.42  Aligned_cols=106  Identities=15%  Similarity=0.160  Sum_probs=93.8

Q ss_pred             cccCCc-cccccCchhhcCCCCCCEEEeeC-CccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCc
Q 007711            6 RNLKDL-CLEGTLAPEIQSLTHIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN   83 (592)
Q Consensus         6 l~l~~~-~l~g~~p~~~~~l~~L~~l~l~~-n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N   83 (592)
                      ++++++ +|++ ||. |+.+++|+.|+|++ |.|++..|..|+.+++|+.|+|++|+|+|..|..|..+++|+.|+|++|
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            577887 8985 999 99999999999996 9999988899999999999999999999988899999999999999999


Q ss_pred             ccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           84 DFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        84 ~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++..|..+..+. |+.|+|++|.|.....
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            99965544454554 9999999999997643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.31  E-value=4e-12  Score=140.35  Aligned_cols=114  Identities=14%  Similarity=0.075  Sum_probs=105.5

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      ++.|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|++++..|..+..+++|+.|+|++
T Consensus        35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  114 (606)
T 3t6q_A           35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ  114 (606)
T ss_dssp             CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT
T ss_pred             CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc
Confidence            67899999999988888999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCc-ccccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSS-AAKKE  116 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g-~~p~~  116 (592)
                      |.+++..|..++++++|++|++++|++++ .+|..
T Consensus       115 n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  149 (606)
T 3t6q_A          115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG  149 (606)
T ss_dssp             SCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT
T ss_pred             cCcccCCcchhccCCcccEEECCCCcccccCcccc
Confidence            99998778889999999999999999998 44543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.31  E-value=2.8e-12  Score=120.13  Aligned_cols=108  Identities=10%  Similarity=0.148  Sum_probs=98.7

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.++  .++.+..+++|+.|+|++|.+++..|..++.+++|++|+|++|++++..|..+..+++|+.|+|+
T Consensus        67 ~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  144 (197)
T 4ezg_A           67 NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS  144 (197)
T ss_dssp             TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred             CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence            4788999999664  45689999999999999999999999999999999999999999999899999999999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      +|.+.+.+| .+..+++|+.|++++|++++.
T Consensus       145 ~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~  174 (197)
T 4ezg_A          145 YNGAITDIM-PLKTLPELKSLNIQFDGVHDY  174 (197)
T ss_dssp             SCTBCCCCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred             CCCCccccH-hhcCCCCCCEEECCCCCCcCh
Confidence            999666787 699999999999999999873

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.31  E-value=1e-12  Score=117.10  Aligned_cols=103  Identities=17%  Similarity=0.089  Sum_probs=93.5

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccc-cCCccccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g-~iP~~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++|.+++.  +.++.+++|+.|+|++|.+++.+|..++.+++|+.|++++|++++ +.|..+..+++|+.|++
T Consensus        43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence            478899999999976  789999999999999999999899999999999999999999997 35588999999999999


Q ss_pred             cCcccccccC---hhhhcCCCCCEEECCC
Q 007711           81 DNNDFVGSLS---PEIYKLQVLSESQVDE  106 (592)
Q Consensus        81 ~~N~~~g~ip---~~~~~~~~l~~l~l~~  106 (592)
                      ++|.+++..+   ..+..+++|+.|++++
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999998766   5789999999999864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.31  E-value=3.7e-12  Score=137.87  Aligned_cols=111  Identities=15%  Similarity=0.101  Sum_probs=69.9

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccc--cCCccccCCCCCCeEec
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG--PLPNDLGINHSLTILLL   80 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g--~iP~~~~~~~~L~~l~l   80 (592)
                      |+.|++++|++.+..  ....+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++  .+|..+..+++|+.|+|
T Consensus       304 L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          304 IKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             CSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             eeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            556666666654321  11466666666666666666666666666666666666666665  55556666666666666


Q ss_pred             cCcccccccChh-hhcCCCCCEEECCCCCCCccccc
Q 007711           81 DNNDFVGSLSPE-IYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        81 ~~N~~~g~ip~~-~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      ++|.+++.+|.. +..+++|+.|++++|++++.+|.
T Consensus       382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  417 (520)
T 2z7x_B          382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR  417 (520)
T ss_dssp             CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG
T ss_pred             CCCcCCcccccchhccCccCCEEECcCCCCCcchhh
Confidence            666666656653 55566666666666666665553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.31  E-value=4e-12  Score=140.31  Aligned_cols=113  Identities=16%  Similarity=0.060  Sum_probs=73.7

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|++++..|..|..+++|++|+|++
T Consensus        34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  113 (606)
T 3vq2_A           34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE  113 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred             cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence            55666666666665555666666666666666666666666666666666666666666665566666666666666666


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCc-cccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSS-AAKK  115 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g-~~p~  115 (592)
                      |.+++..|..++++++|++|++++|++++ .+|.
T Consensus       114 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~  147 (606)
T 3vq2_A          114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA  147 (606)
T ss_dssp             SCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             CccccccccccCCCCCCCEEeCCCCcccceechH
Confidence            66665555566666666666666666654 4443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.30  E-value=3.1e-13  Score=151.87  Aligned_cols=113  Identities=19%  Similarity=0.228  Sum_probs=102.7

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.|+ .||.+|++|++|+.|+|++|.|+ .||..|+++++|++|+|++|.|+ .||..|+.+++|+.|+|+
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            4789999999999 89999999999999999999999 89999999999999999999997 999999999999999999


Q ss_pred             CcccccccChhhhcCCC-CCEEECCCCCCCccccccc
Q 007711           82 NNDFVGSLSPEIYKLQV-LSESQVDEGQLSSAAKKEQ  117 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~-l~~l~l~~n~l~g~~p~~~  117 (592)
                      +|.|+|.+|..++.+.. +..++|++|.++|.+|...
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l  361 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER  361 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence            99999999998876532 2347899999999999643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.30  E-value=1.2e-11  Score=113.72  Aligned_cols=109  Identities=21%  Similarity=0.216  Sum_probs=94.7

Q ss_pred             eecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCc
Q 007711            4 MCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN   83 (592)
Q Consensus         4 ~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N   83 (592)
                      +.+++++++++ .+|..+.  ++|+.|+|++|++++..|..++.+++|++|+|++|++++..+..+..+++|+.|+|++|
T Consensus        10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            45788899987 5776554  79999999999999877777899999999999999999655566789999999999999


Q ss_pred             ccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           84 DFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        84 ~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      ++++..+..+..+++|+.|++++|++++..+.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  118 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDG  118 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence            99987777789999999999999999976553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.30  E-value=3.4e-12  Score=139.66  Aligned_cols=114  Identities=19%  Similarity=0.169  Sum_probs=99.7

Q ss_pred             ceeecccCCccccccCc-hhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCccc-ccCCccccCCCCCCeEe
Q 007711            2 CVMCRNLKDLCLEGTLA-PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS-GPLPNDLGINHSLTILL   79 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p-~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~-g~iP~~~~~~~~L~~l~   79 (592)
                      .|+.|+|++|.+++..| ..+.++++|+.|+|++|.+.+.+|..+..+++|+.|+|++|+++ +.+|..+..+++|+.|+
T Consensus       397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  476 (570)
T 2z63_A          397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  476 (570)
T ss_dssp             TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence            46788899999988766 46888999999999999999988988999999999999999987 67898888999999999


Q ss_pred             ccCcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           80 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        80 l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      |++|++++..|..+.++++|+.|++++|++++.+|.
T Consensus       477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  512 (570)
T 2z63_A          477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG  512 (570)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence            999999988888889999999999999999887664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.30  E-value=2.1e-12  Score=117.58  Aligned_cols=109  Identities=17%  Similarity=0.091  Sum_probs=97.7

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCccccc-CCccccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP-LPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~-iP~~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++.+|..++.+++|++|+|++|++++- .+..+..+++|+.|+|
T Consensus        50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence            478899999999975  7899999999999999999998999888999999999999999852 2378899999999999


Q ss_pred             cCcccccccC---hhhhcCCCCCEEECCCCCCCcc
Q 007711           81 DNNDFVGSLS---PEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        81 ~~N~~~g~ip---~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      ++|.+++..+   ..+..+++|+.|+++.|.+...
T Consensus       128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             eCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            9999997665   4788999999999999998754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.30  E-value=4.5e-12  Score=130.61  Aligned_cols=112  Identities=19%  Similarity=0.137  Sum_probs=100.1

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.|++..|..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|+
T Consensus        65 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  144 (361)
T 2xot_A           65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS  144 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECC
Confidence            47889999999998777789999999999999999998888889999999999999999998888999999999999999


Q ss_pred             CcccccccChhh----hcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEI----YKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~----~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++++ +|..+    ..+++|+.|+|++|+|++..+
T Consensus       145 ~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  180 (361)
T 2xot_A          145 QNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPL  180 (361)
T ss_dssp             SSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred             CCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence            999996 66554    579999999999999996543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.29  E-value=4.5e-12  Score=138.65  Aligned_cols=94  Identities=14%  Similarity=0.110  Sum_probs=68.0

Q ss_pred             cCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccc--cCCccccCCCCCCeEeccCcccccccChh-hhcCCC
Q 007711           22 QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG--PLPNDLGINHSLTILLLDNNDFVGSLSPE-IYKLQV   98 (592)
Q Consensus        22 ~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g--~iP~~~~~~~~L~~l~l~~N~~~g~ip~~-~~~~~~   98 (592)
                      ..+++|+.|+|++|.+++.+|..++++++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.+|.. +..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            566777777777777777777777777777777777777775  44556777777777777777777766654 566777


Q ss_pred             CCEEECCCCCCCccccc
Q 007711           99 LSESQVDEGQLSSAAKK  115 (592)
Q Consensus        99 l~~l~l~~n~l~g~~p~  115 (592)
                      |+.|++++|++++.+|.
T Consensus       430 L~~L~l~~n~l~~~~~~  446 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFR  446 (562)
T ss_dssp             CCEEECCSSCCCGGGGS
T ss_pred             CCEEECCCCCCCcchhh
Confidence            77777777777766654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.29  E-value=3.6e-12  Score=136.69  Aligned_cols=112  Identities=14%  Similarity=0.103  Sum_probs=92.5

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCc--------------
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--------------   67 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~--------------   67 (592)
                      .|+.|+|++|.+++..|..|..+++|+.|+|++|.+++.+|  ++.+++|++|+|++|.+++..+.              
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~  112 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence            47899999999999888899999999999999999998776  88999999999988888753211              


Q ss_pred             --cccCCCCCCeEeccCcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           68 --DLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        68 --~~~~~~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                        ....+++|+.|+|++|.+++..|..++.+++|+.|+|++|++++.+|.
T Consensus       113 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (487)
T 3oja_A          113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (487)
T ss_dssp             CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred             CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence              012356788888888888888888888888888888888888887665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.28  E-value=5.5e-12  Score=139.64  Aligned_cols=115  Identities=18%  Similarity=0.189  Sum_probs=104.2

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|+|++..|..|.+|++|++|+|++|+|++..|..|.++++|++|+|++|++++-.|..|+.+++|+.|+|+
T Consensus        77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls  156 (635)
T 4g8a_A           77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  156 (635)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc
Confidence            47899999999997666779999999999999999998777889999999999999999997666679999999999999


Q ss_pred             Cccccc-ccChhhhcCCCCCEEECCCCCCCcccccc
Q 007711           82 NNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        82 ~N~~~g-~ip~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      +|.+++ .+|..++.++.|++|++++|++++..+..
T Consensus       157 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  192 (635)
T 4g8a_A          157 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  192 (635)
T ss_dssp             SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             cCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence            999986 57888999999999999999999877753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.28  E-value=2.4e-12  Score=140.26  Aligned_cols=113  Identities=19%  Similarity=0.195  Sum_probs=88.6

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++..|..+.++++|++|+|++|++++..|..|+++++|++|+|++|++++..|..++.+++|++|+|+
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            36778888888887777778888888888888888887777788888888888888888886666667888888888888


Q ss_pred             Cccccc-ccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g-~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|.+++ .+|..++++++|++|++++|++.+.+|
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  140 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR  140 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             CCcccccchhhhhhccCCccEEECCCCccccccC
Confidence            888876 466777888888888888887666655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.28  E-value=4.4e-12  Score=145.47  Aligned_cols=112  Identities=18%  Similarity=0.141  Sum_probs=84.4

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCC-CccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGII-PEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~i-P~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      |+.|+|++|.+++..|..|.++++|++|+|++|.+.+.| |..|+++++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus        26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  105 (844)
T 3j0a_A           26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY  105 (844)
T ss_dssp             CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred             cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence            567788888887777777777777777777777666666 5667777777777777777777777777777777777777


Q ss_pred             CcccccccChh--hhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPE--IYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~--~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|.+++.+|..  ++++++|++|+|++|++++..+
T Consensus       106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~  140 (844)
T 3j0a_A          106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL  140 (844)
T ss_dssp             TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred             CCCCCcccccCccccccCCCCEEECCCCccccccc
Confidence            77777766665  7777777777777777776544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.27  E-value=8.1e-12  Score=137.63  Aligned_cols=110  Identities=21%  Similarity=0.193  Sum_probs=75.3

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|.+++..|..|+.+++|+.|+|++|.+++..|..|+.+++|++|+|++|++++-.|..|..+++|+.|+|++
T Consensus        77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~  156 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN  156 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence            56667777777766666677777777777777777766666667777777777777777633333346677777777777


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      |.+++..|..++++++|+.|++++|++++.
T Consensus       157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          157 NNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             CcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            777766666677777777777777777654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.26  E-value=7.8e-12  Score=133.81  Aligned_cols=113  Identities=19%  Similarity=0.164  Sum_probs=104.6

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++..|..|.++++|+.|+|++|.+++..+..|+++++|+.|+|++|++.+..|..+..+++|+.|+|+
T Consensus        57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~  136 (477)
T 2id5_A           57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG  136 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred             CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC
Confidence            47889999999999889999999999999999999997666678999999999999999999889999999999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|.+++..|..+.++++|+.|++++|++++..+
T Consensus       137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A          137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            999999999999999999999999999987654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.26  E-value=4.1e-12  Score=137.50  Aligned_cols=100  Identities=16%  Similarity=0.151  Sum_probs=48.2

Q ss_pred             cccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCccc
Q 007711            6 RNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF   85 (592)
Q Consensus         6 l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~   85 (592)
                      |++++|+|+ .+|..+.  ++|+.|+|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++
T Consensus         5 l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            5 VDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             EECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred             EecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence            444455544 3444443  4455555555555444444444555555555555555444444444455555555555554


Q ss_pred             ccccChhhhcCCCCCEEECCCCCCCc
Q 007711           86 VGSLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        86 ~g~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      + .+|..  .+++|++|++++|++++
T Consensus        82 ~-~lp~~--~l~~L~~L~L~~N~l~~  104 (520)
T 2z7x_B           82 V-KISCH--PTVNLKHLDLSFNAFDA  104 (520)
T ss_dssp             C-EEECC--CCCCCSEEECCSSCCSS
T ss_pred             e-ecCcc--ccCCccEEeccCCcccc
Confidence            4 34433  44455555555555444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.26  E-value=4.6e-12  Score=138.07  Aligned_cols=115  Identities=17%  Similarity=0.192  Sum_probs=106.2

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccc-cCCccccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g-~iP~~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|++++ .+|..+..+++|+.|+|
T Consensus        51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  130 (549)
T 2z81_A           51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI  130 (549)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred             cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEEC
Confidence            47899999999999888899999999999999999999888889999999999999999997 57889999999999999


Q ss_pred             cCcccccccC-hhhhcCCCCCEEECCCCCCCcccccc
Q 007711           81 DNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        81 ~~N~~~g~ip-~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      ++|.+.+.+| ..+.++++|++|++++|++++.+|..
T Consensus       131 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  167 (549)
T 2z81_A          131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS  167 (549)
T ss_dssp             EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             CCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence            9999877887 47999999999999999999987753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.25  E-value=3e-11  Score=133.30  Aligned_cols=110  Identities=19%  Similarity=0.189  Sum_probs=86.6

Q ss_pred             ceeecccCCccccccC--chhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCcc-ccCCCCCCeE
Q 007711            2 CVMCRNLKDLCLEGTL--APEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTIL   78 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~--p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~-~~~~~~L~~l   78 (592)
                      .|+.|+|++|.+++..  |..+..+++|+.|+|++|.+.+..|..++.+++|+.|++++|++.+..|.. +..+++|+.|
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  430 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL  430 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence            3677788888887665  667788888888888888888777888888888888888888888776654 6777888888


Q ss_pred             eccCcccccccChhhhcCCCCCEEECCCCCCCc
Q 007711           79 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        79 ~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      ++++|.+++..|..+..+++|++|++++|++++
T Consensus       431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  463 (606)
T 3t6q_A          431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK  463 (606)
T ss_dssp             ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred             ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence            888888887777777888888888888888876

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.24  E-value=1.8e-11  Score=130.09  Aligned_cols=113  Identities=19%  Similarity=0.137  Sum_probs=94.8

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .++.|+|++|.+++..|..|.++++|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..+..+++|+.|+|+
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            36788999999998888889999999999999999998888889999999999999999986555668888999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++++..+..+.++++|+.|++++|+..+.++
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence            999986666678888888888888866555555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.24  E-value=5.9e-12  Score=135.04  Aligned_cols=108  Identities=15%  Similarity=0.074  Sum_probs=71.6

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCcccc-CCCCCCeEecc
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG-INHSLTILLLD   81 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~-~~~~L~~l~l~   81 (592)
                      |+.|+|++|.|++..+.   .+++|+.|+|++|.|++..|..++.+++|+.|+|++|++++.+|..+. .+++|+.|+|+
T Consensus       101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls  177 (487)
T 3oja_A          101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (487)
T ss_dssp             CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence            45566666666654432   356677777777777777777777777777777777777776666664 56777777777


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|.+++..+  +..+++|+.|+|++|+|++.+|.
T Consensus       178 ~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~  209 (487)
T 3oja_A          178 YNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE  209 (487)
T ss_dssp             TSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG
T ss_pred             CCccccccc--cccCCCCCEEECCCCCCCCCCHh
Confidence            777775522  33567777777777777765543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.23  E-value=1.7e-11  Score=134.11  Aligned_cols=114  Identities=16%  Similarity=0.172  Sum_probs=102.9

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCC-ccccCCCCCCeeeccCCcccccCCccccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP-EGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP-~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++|.+++ +|+.+..+++|+.|+|++|.+.+..| ..+.++++|+.|++++|++.+.+|..+..+++|+.|+|
T Consensus       374 ~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  452 (570)
T 2z63_A          374 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  452 (570)
T ss_dssp             CCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             ccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence            47889999999986 45559999999999999999998877 56889999999999999999999999999999999999


Q ss_pred             cCcccc-cccChhhhcCCCCCEEECCCCCCCcccccc
Q 007711           81 DNNDFV-GSLSPEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        81 ~~N~~~-g~ip~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      ++|.++ +.+|..+..+++|+.|++++|++++..|..
T Consensus       453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~  489 (570)
T 2z63_A          453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA  489 (570)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             cCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence            999998 789999999999999999999999887753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.23  E-value=3.3e-11  Score=128.06  Aligned_cols=111  Identities=15%  Similarity=0.068  Sum_probs=95.9

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++..|..|.++++|+.|+|++|.|++..+..|..+++|+.|+|++|++++-.+..+..+++|+.|+|+
T Consensus       100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  179 (452)
T 3zyi_A          100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG  179 (452)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC
Confidence            47889999999998888899999999999999999997777779999999999999999995555578888999999999


Q ss_pred             CcccccccCh-hhhcCCCCCEEECCCCCCCcc
Q 007711           82 NNDFVGSLSP-EIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        82 ~N~~~g~ip~-~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      +|+..+.+|. .+.++++|+.|++++|++++.
T Consensus       180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            8666667766 577888899999988888864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.23  E-value=3.4e-12  Score=128.59  Aligned_cols=114  Identities=11%  Similarity=0.033  Sum_probs=93.9

Q ss_pred             ceeecccCCccccccCc----hhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCccccc--CC--ccccCCC
Q 007711            2 CVMCRNLKDLCLEGTLA----PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP--LP--NDLGINH   73 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p----~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~--iP--~~~~~~~   73 (592)
                      .|+.|+|++|.+++..|    ..+..+++|+.|+|++|.+.+..|..++.+++|++|+|++|++.|.  +|  ..+..++
T Consensus       118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~  197 (310)
T 4glp_A          118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP  197 (310)
T ss_dssp             CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred             CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence            47889999999998766    3456899999999999999998889999999999999999998763  33  2346789


Q ss_pred             CCCeEeccCcccc--cccChh-hhcCCCCCEEECCCCCCCccccc
Q 007711           74 SLTILLLDNNDFV--GSLSPE-IYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        74 ~L~~l~l~~N~~~--g~ip~~-~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|+.|+|++|+++  +.++.. +..+++|++|+|++|++++.+|.
T Consensus       198 ~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~  242 (310)
T 4glp_A          198 AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP  242 (310)
T ss_dssp             CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred             CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence            9999999999997  223333 47889999999999999998664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.23  E-value=1.3e-11  Score=135.11  Aligned_cols=101  Identities=19%  Similarity=0.204  Sum_probs=62.5

Q ss_pred             ecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCcc
Q 007711            5 CRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND   84 (592)
Q Consensus         5 ~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~   84 (592)
                      .+++++|+|++ +|..+.  ++|+.|+|++|.+++..|..|+.+++|++|+|++|++++..|..|..+++|++|+|++|+
T Consensus        35 ~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  111 (562)
T 3a79_B           35 MVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR  111 (562)
T ss_dssp             EEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence            45666666663 565443  566666666666665555566666666666666666665556666666666666666666


Q ss_pred             cccccChhhhcCCCCCEEECCCCCCCc
Q 007711           85 FVGSLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        85 ~~g~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      ++ .+|..  .+++|++|++++|++++
T Consensus       112 l~-~lp~~--~l~~L~~L~Ls~N~l~~  135 (562)
T 3a79_B          112 LQ-NISCC--PMASLRHLDLSFNDFDV  135 (562)
T ss_dssp             CC-EECSC--CCTTCSEEECCSSCCSB
T ss_pred             CC-ccCcc--ccccCCEEECCCCCccc
Confidence            66 45554  56666666666666655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.23  E-value=1.1e-11  Score=142.30  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=101.6

Q ss_pred             ceeecccCCccccccC-chhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCcc--ccCCCCCCeE
Q 007711            2 CVMCRNLKDLCLEGTL-APEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND--LGINHSLTIL   78 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~-p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~--~~~~~~L~~l   78 (592)
                      .|+.|+|++|.+.+.| |..|.++++|++|+|++|.+++..|..|+++++|++|+|++|++++.+|..  +..+++|+.|
T Consensus        49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L  128 (844)
T 3j0a_A           49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL  128 (844)
T ss_dssp             SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred             cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence            4788999999888888 567999999999999999999999999999999999999999999888776  8899999999


Q ss_pred             eccCcccccccC-hhhhcCCCCCEEECCCCCCCccccc
Q 007711           79 LLDNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        79 ~l~~N~~~g~ip-~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|++|.+++..| ..++++++|++|++++|++++..+.
T Consensus       129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~  166 (844)
T 3j0a_A          129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH  166 (844)
T ss_dssp             EEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred             ECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence            999999998766 5789999999999999999887765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.23  E-value=3.4e-11  Score=127.45  Aligned_cols=114  Identities=18%  Similarity=0.142  Sum_probs=96.7

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .++.|+|++|.+++..+..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|++++-.+..+..+++|+.|+|+
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            36788999999998878889999999999999999998888889999999999999999985555578889999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|++++..+..+.++++|+.|++++|+..+.++.
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence            9999876666788888999999988666555553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.22  E-value=1.5e-11  Score=112.83  Aligned_cols=105  Identities=18%  Similarity=0.231  Sum_probs=89.2

Q ss_pred             ceeecccCCccccccCchhhcCCC-CCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCcc-ccCCCCCCeEe
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLT-HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILL   79 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~-~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~-~~~~~~L~~l~   79 (592)
                      .|+.|+|++|+++ .+|. +..+. +|+.|+|++|.|++.  ..++.+++|+.|+|++|++++ +|.. +..+++|+.|+
T Consensus        20 ~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           20 RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELI   94 (176)
T ss_dssp             SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEE
T ss_pred             CceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEE
Confidence            4788999999998 4654 55555 999999999999975  678999999999999999995 5554 48899999999


Q ss_pred             ccCcccccccCh--hhhcCCCCCEEECCCCCCCcc
Q 007711           80 LDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        80 l~~N~~~g~ip~--~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      |++|+++ .+|.  .+..+++|+.|++++|.++..
T Consensus        95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~  128 (176)
T 1a9n_A           95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK  128 (176)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc
Confidence            9999994 6776  788999999999999999843

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.22  E-value=9.9e-12  Score=127.54  Aligned_cols=109  Identities=23%  Similarity=0.287  Sum_probs=85.9

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCcc-ccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~-~~~~~~L~~l~l   80 (592)
                      .|+.|+|++|++++..+..+.++++|+.|+|++|.+++..|..|+++++|++|+|++|++++ +|.. +..+++|+.|+|
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEEC
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEEC
Confidence            36778888888886555578888888888888888888778888888888888888888884 5544 778888888888


Q ss_pred             cCcccccccCh--hhhcCCCCCEEECCCCC-CCcc
Q 007711           81 DNNDFVGSLSP--EIYKLQVLSESQVDEGQ-LSSA  112 (592)
Q Consensus        81 ~~N~~~g~ip~--~~~~~~~l~~l~l~~n~-l~g~  112 (592)
                      ++|+++ .+|.  .+.++++|++|++++|+ +++.
T Consensus       132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~  165 (353)
T 2z80_A          132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKI  165 (353)
T ss_dssp             TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             CCCCCc-ccCchhhhccCCCCcEEECCCCcccccc
Confidence            888888 4554  67788888888888885 4443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.21  E-value=9.4e-12  Score=125.32  Aligned_cols=108  Identities=20%  Similarity=0.149  Sum_probs=79.2

Q ss_pred             eeecccCCccccccCchhh--cCCCCCCEEEeeCCccccCCC----ccccCCCCCCeeeccCCcccccCCccccCCCCCC
Q 007711            3 VMCRNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIP----EGFGELEELEVLDFGHNNFSGPLPNDLGINHSLT   76 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~--~~l~~L~~l~l~~n~l~g~iP----~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~   76 (592)
                      |+.|+|++|.++|.+|..+  ..+++|+.|+|++|.+++.+|    ..+..+++|++|+|++|++++..|..+..+++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            6677778888877777776  777888888888888877666    3345677788888888888776667777778888


Q ss_pred             eEeccCcccccc--cChh--hhcCCCCCEEECCCCCCC
Q 007711           77 ILLLDNNDFVGS--LSPE--IYKLQVLSESQVDEGQLS  110 (592)
Q Consensus        77 ~l~l~~N~~~g~--ip~~--~~~~~~l~~l~l~~n~l~  110 (592)
                      .|+|++|++.|.  ++..  ++++++|++|++++|+++
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  210 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME  210 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence            888888877653  3222  356777888888888776

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.21  E-value=2.2e-11  Score=117.60  Aligned_cols=112  Identities=13%  Similarity=0.144  Sum_probs=90.0

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCc-cccCCCccccCCCCCCeeeccC-CcccccCCccccCCCCCCeEe
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNS-FSGIIPEGFGELEELEVLDFGH-NNFSGPLPNDLGINHSLTILL   79 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~-l~g~iP~~~~~l~~L~~l~l~~-N~l~g~iP~~~~~~~~L~~l~   79 (592)
                      .|+.|+|++|++++..+..+..+++|+.|+|++|. +++..|..|.++++|+.|++++ |++++-.|..|..+++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            36788888999887655678889999999999996 7766666788889999999998 888865556778888899999


Q ss_pred             ccCcccccccChhhhcCCCCC---EEECCCC-CCCccccc
Q 007711           80 LDNNDFVGSLSPEIYKLQVLS---ESQVDEG-QLSSAAKK  115 (592)
Q Consensus        80 l~~N~~~g~ip~~~~~~~~l~---~l~l~~n-~l~g~~p~  115 (592)
                      |++|++++ +|. +..+.+|+   .|++++| ++++..+.
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~  149 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVN  149 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcc
Confidence            99998886 776 77888887   8888888 77765443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.21  E-value=3.4e-11  Score=125.28  Aligned_cols=110  Identities=18%  Similarity=0.227  Sum_probs=65.2

Q ss_pred             eeecccCCccccccCchh-hcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            3 VMCRNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~-~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      ++.|++++|.++. +|+. +..+++|+.|+|++|.+.+..|..|+.+++|++|+|++|++++..|..+..+++|+.|+|+
T Consensus        47 l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           47 QKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            4455566665553 4433 4566666666666666665555566666666666666666665555556666666666666


Q ss_pred             CcccccccChh-hhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPE-IYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~-~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|+++ .+|.. +.++++|++|++++|++++..|
T Consensus       126 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~  158 (390)
T 3o6n_A          126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED  158 (390)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             CCccC-cCCHHHhcCCCCCcEEECCCCccCccCh
Confidence            66666 33333 4566666666666666665444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.20  E-value=2.5e-11  Score=135.80  Aligned_cols=112  Identities=24%  Similarity=0.243  Sum_probs=79.3

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCc-cccCCCCCCeEecc
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTILLLD   81 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~-~~~~~~~L~~l~l~   81 (592)
                      |+.|+|++|.+++..+..|.++++|++|+|++|.+++..|..++++++|++|+|++|++++ +|. .|..+++|++|+|+
T Consensus        27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~  105 (680)
T 1ziw_A           27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLM  105 (680)
T ss_dssp             CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECC
T ss_pred             CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhccCCCCCEEECC
Confidence            5667777777776555567777777777777777777777777777777777777777773 443 56777777777777


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|++++..|..++++++|++|++++|++++..|.
T Consensus       106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  139 (680)
T 1ziw_A          106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG  139 (680)
T ss_dssp             SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred             CCccCccChhHccccCCCCEEECCCCcccccCch
Confidence            7777765556677777777777777777766554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.19  E-value=2.5e-11  Score=135.80  Aligned_cols=114  Identities=16%  Similarity=0.129  Sum_probs=105.0

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++..|..++++++|+.|+|++|.+++..+..|+++++|++|+|++|++++..|..+..+++|+.|+|+
T Consensus        50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  129 (680)
T 1ziw_A           50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS  129 (680)
T ss_dssp             TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECC
Confidence            47889999999999889999999999999999999996555579999999999999999997667889999999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|.+++..|..++++++|++|++++|++++..+.
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  163 (680)
T 1ziw_A          130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE  163 (680)
T ss_dssp             SSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred             CCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence            9999999999999999999999999999987764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.19  E-value=9.8e-12  Score=114.12  Aligned_cols=106  Identities=20%  Similarity=0.176  Sum_probs=94.1

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCc--cccCCCCCCeEe
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--DLGINHSLTILL   79 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~--~~~~~~~L~~l~   79 (592)
                      .|+.|+|++|.|++.  +.+..+++|+.|+|++|.|++..|..++.+++|++|+|++|+++ .+|.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence            478999999999975  68999999999999999999754455599999999999999995 7887  889999999999


Q ss_pred             ccCcccccccChh----hhcCCCCCEEECCCCCCCc
Q 007711           80 LDNNDFVGSLSPE----IYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        80 l~~N~~~g~ip~~----~~~~~~l~~l~l~~n~l~g  111 (592)
                      |++|.++ .+|..    +..+++|+.||++.|.+..
T Consensus       120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999998 66775    8999999999999988764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.19  E-value=1.8e-11  Score=125.55  Aligned_cols=104  Identities=17%  Similarity=0.091  Sum_probs=83.3

Q ss_pred             cccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCccc
Q 007711            6 RNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF   85 (592)
Q Consensus         6 l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~   85 (592)
                      .++++++++ .+|..+.  ++|+.|+|++|.+++..+..+.++++|+.|+|++|++++..|..+..+++|+.|+|++|++
T Consensus        36 c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  112 (353)
T 2z80_A           36 CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL  112 (353)
T ss_dssp             EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence            466777777 5787665  4888888988888876666788888899999988888877777888888888899988888


Q ss_pred             ccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           86 VGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        86 ~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      ++..+..+.++++|++|++++|++++.
T Consensus       113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l  139 (353)
T 2z80_A          113 SNLSSSWFKPLSSLTFLNLLGNPYKTL  139 (353)
T ss_dssp             SSCCHHHHTTCTTCSEEECTTCCCSSS
T ss_pred             CcCCHhHhCCCccCCEEECCCCCCccc
Confidence            854444478888888999988888854

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.19  E-value=5.2e-11  Score=131.14  Aligned_cols=113  Identities=16%  Similarity=0.158  Sum_probs=100.5

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      ++.+++++|.+++.-+..+.++++|+.|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+.+++|+.|+|++
T Consensus        53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  132 (597)
T 3oja_B           53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER  132 (597)
T ss_dssp             CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence            56778888888754344578999999999999999999899999999999999999999988888889999999999999


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      |.+++..+..++++++|+.|+|++|++++..|.
T Consensus       133 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  165 (597)
T 3oja_B          133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD  165 (597)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh
Confidence            999955555578999999999999999998775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.18  E-value=3.5e-11  Score=131.05  Aligned_cols=100  Identities=19%  Similarity=0.221  Sum_probs=91.2

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccC-CccccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL-PNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~i-P~~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++|.|+ .+|..|+++++|+.|+|++|.|++ +| .++.+++|+.|+|++|+|++.+ |..+..+++|+.|+|
T Consensus       464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L  540 (567)
T 1dce_A          464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL  540 (567)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence            4789999999999 899999999999999999999997 78 8999999999999999999887 999999999999999


Q ss_pred             cCcccccccChh---hhcCCCCCEEEC
Q 007711           81 DNNDFVGSLSPE---IYKLQVLSESQV  104 (592)
Q Consensus        81 ~~N~~~g~ip~~---~~~~~~l~~l~l  104 (592)
                      ++|.|++..|..   +..+++|+.|++
T Consensus       541 ~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          541 QGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999887642   335889998875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.17  E-value=1.3e-10  Score=118.00  Aligned_cols=109  Identities=18%  Similarity=0.255  Sum_probs=81.1

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccc--cCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEec
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFS--GIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL   80 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~--g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l   80 (592)
                      |+.|+|++|.+++..+..+.++++|+.|+|++|.+.  |..|..+..+++|+.|++++|+++ .+|..+.  ++|+.|+|
T Consensus       123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l  199 (330)
T 1xku_A          123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHL  199 (330)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEEC
T ss_pred             ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEEC
Confidence            566667777776655556777777888888777774  466777777778888888887777 4666554  67888888


Q ss_pred             cCcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           81 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        81 ~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      ++|++++..|..+.++++|+.|++++|++++..+
T Consensus       200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  233 (330)
T 1xku_A          200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN  233 (330)
T ss_dssp             TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence            8888887777778888888888888888877655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.17  E-value=8e-13  Score=123.98  Aligned_cols=105  Identities=23%  Similarity=0.364  Sum_probs=95.9

Q ss_pred             eeecccCCccccccCch------hhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCC
Q 007711            3 VMCRNLKDLCLEGTLAP------EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLT   76 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~------~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~   76 (592)
                      ++.++|+.+.|+|.+|.      .+..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|+++ .+|..+..+++|+
T Consensus        20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~   96 (198)
T 1ds9_A           20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE   96 (198)
T ss_dssp             CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred             ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence            67789999999999987      89999999999999999997 88 8999999999999999998 7998888889999


Q ss_pred             eEeccCcccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           77 ILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        77 ~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      .|+|++|++++ +| .+..+++|+.|++++|++++.
T Consensus        97 ~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~  130 (198)
T 1ds9_A           97 ELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNW  130 (198)
T ss_dssp             EEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCH
T ss_pred             EEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCch
Confidence            99999999997 55 688999999999999999863

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.17  E-value=4e-11  Score=121.89  Aligned_cols=104  Identities=24%  Similarity=0.292  Sum_probs=68.8

Q ss_pred             eeecccCCcccc--ccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEec
Q 007711            3 VMCRNLKDLCLE--GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL   80 (592)
Q Consensus         3 ~~~l~l~~~~l~--g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l   80 (592)
                      |+.|+|++|.++  |..|..+..+ +|+.|++++|.+++ +|..+.  ++|+.|++++|++++..|..+..+++|+.|+|
T Consensus       149 L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L  224 (332)
T 2ft3_A          149 MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL  224 (332)
T ss_dssp             CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred             CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            566777777774  3556666666 67777777777664 555443  56666677777666655566666666667777


Q ss_pred             cCcccccccChhhhcCCCCCEEECCCCCCC
Q 007711           81 DNNDFVGSLSPEIYKLQVLSESQVDEGQLS  110 (592)
Q Consensus        81 ~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~  110 (592)
                      ++|++++..|..+..+++|+.|++++|+++
T Consensus       225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  254 (332)
T 2ft3_A          225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS  254 (332)
T ss_dssp             CSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence            777666665556666666777777766666

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.16  E-value=2.1e-11  Score=117.82  Aligned_cols=86  Identities=10%  Similarity=0.076  Sum_probs=47.5

Q ss_pred             CCCEEEeeCCccccCCCccccCCCCCCeeeccCCc-ccccCCccccCCCCCCeEeccC-cccccccChhhhcCCCCCEEE
Q 007711           26 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN-FSGPLPNDLGINHSLTILLLDN-NDFVGSLSPEIYKLQVLSESQ  103 (592)
Q Consensus        26 ~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~-l~g~iP~~~~~~~~L~~l~l~~-N~~~g~ip~~~~~~~~l~~l~  103 (592)
                      +|+.|+|++|++++..+..|+.+++|+.|++++|+ +++-.+..|..+++|+.|+|++ |++++..|..+.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            55566666666655444455555666666666654 4432223455555666666655 555544444555555666666


Q ss_pred             CCCCCCCc
Q 007711          104 VDEGQLSS  111 (592)
Q Consensus       104 l~~n~l~g  111 (592)
                      +++|++++
T Consensus       112 l~~n~l~~  119 (239)
T 2xwt_C          112 IFNTGLKM  119 (239)
T ss_dssp             EEEECCCS
T ss_pred             CCCCCCcc
Confidence            66665555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.16  E-value=8.4e-11  Score=127.61  Aligned_cols=97  Identities=22%  Similarity=0.266  Sum_probs=73.4

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.|+ .||   ..+++|+.|+|++|+|++ ||. +++  +|+.|+|++|+|++ ||.   .+++|+.|+|+
T Consensus        81 ~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  148 (571)
T 3cvr_A           81 QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINAD  148 (571)
T ss_dssp             TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred             CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCC
Confidence            3677888888887 677   457888888888888887 777 655  78888888888876 776   56778888888


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|++++ +|.   .+++|+.|+|++|+|++ +|.
T Consensus       149 ~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~  177 (571)
T 3cvr_A          149 NNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE  177 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred             CCccCc-CCC---cCCCcCEEECCCCCCCC-cch
Confidence            888876 665   56777788888887777 554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.16  E-value=6.7e-11  Score=120.20  Aligned_cols=105  Identities=20%  Similarity=0.277  Sum_probs=75.2

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|.+++..|..+.++++|+.|+|++|.+++..|..++++++|++|+|++|+++ .+|..+.  ++|+.|++++
T Consensus        56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~  132 (332)
T 2ft3_A           56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHD  132 (332)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCS
T ss_pred             CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCC
Confidence            566777777777655666777777777777777777766777777777777777777776 6666655  6777777777


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCC
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLS  110 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~  110 (592)
                      |++++..+..+.++++|+.|++++|.++
T Consensus       133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          133 NRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             SCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CccCccCHhHhCCCccCCEEECCCCccc
Confidence            7777555555677777777777777775

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.16  E-value=5e-11  Score=108.72  Aligned_cols=89  Identities=21%  Similarity=0.180  Sum_probs=80.7

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.|++..|..|..+++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..|..+..+++|+.|+|+
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            47889999999999888899999999999999999998777778999999999999999997666678999999999999


Q ss_pred             CcccccccC
Q 007711           82 NNDFVGSLS   90 (592)
Q Consensus        82 ~N~~~g~ip   90 (592)
                      +|.|++..+
T Consensus       111 ~N~~~c~c~  119 (170)
T 3g39_A          111 NNPWDCACS  119 (170)
T ss_dssp             SSCBCTTBG
T ss_pred             CCCCCCCch
Confidence            999986654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.16  E-value=6.7e-11  Score=125.22  Aligned_cols=101  Identities=20%  Similarity=0.173  Sum_probs=51.2

Q ss_pred             cCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCccccc
Q 007711            8 LKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVG   87 (592)
Q Consensus         8 l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~~g   87 (592)
                      .++++|+ .+|..+.  ++++.|+|++|++.+..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++
T Consensus        50 c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~  126 (440)
T 3zyj_A           50 CVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT  126 (440)
T ss_dssp             CCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS
T ss_pred             eCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe
Confidence            3334443 3444333  445555555555555555555555555555555555554444445555555555555555553


Q ss_pred             ccChhhhcCCCCCEEECCCCCCCc
Q 007711           88 SLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        88 ~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      ..+..+..+++|++|+|++|++++
T Consensus       127 ~~~~~~~~l~~L~~L~L~~N~i~~  150 (440)
T 3zyj_A          127 IPNGAFVYLSKLKELWLRNNPIES  150 (440)
T ss_dssp             CCTTTSCSCSSCCEEECCSCCCCE
T ss_pred             eCHhHhhccccCceeeCCCCcccc
Confidence            333345555555555555555553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.15  E-value=7.8e-11  Score=119.60  Aligned_cols=105  Identities=21%  Similarity=0.316  Sum_probs=83.4

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      ++.|+|++|.+++..+..|.++++|+.|+|++|.+++..|..++++++|++|+|++|+++ .+|..+.  ++|+.|++++
T Consensus        54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~  130 (330)
T 1xku_A           54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHE  130 (330)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCS
T ss_pred             CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCC
Confidence            567888888888766667888888888888888888877888888888888888888887 6776664  6788888888


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCC
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLS  110 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~  110 (592)
                      |.+++..+..+.++++|+.|++++|+++
T Consensus       131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A          131 NEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             CcccccCHhHhcCCccccEEECCCCcCC
Confidence            8887666666777888888888887775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.15  E-value=4.6e-11  Score=120.69  Aligned_cols=112  Identities=14%  Similarity=0.103  Sum_probs=90.6

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCc--------------
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--------------   67 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~--------------   67 (592)
                      .|+.|+|++|.+++..|..+..+++|+.|+|++|.+++..|  +..+++|++|+|++|++++-.+.              
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~  112 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCS
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccC
Confidence            47889999999998877889999999999999999998765  88999999999999988752210              


Q ss_pred             --cccCCCCCCeEeccCcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           68 --DLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        68 --~~~~~~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                        ....+++|+.|+|++|++++..|..++.+++|+.|++++|++++..+.
T Consensus       113 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (317)
T 3o53_A          113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (317)
T ss_dssp             EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred             CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence              012356678888888888877777888888899999999988876554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.14  E-value=2.2e-10  Score=112.33  Aligned_cols=102  Identities=26%  Similarity=0.358  Sum_probs=85.4

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|+++ .+| .+..+++|+.|+|++|++++..|  ++.+++|+.|+|++|++++ +|....  ++|+.|+|+
T Consensus        42 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~  114 (263)
T 1xeu_A           42 GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLD  114 (263)
T ss_dssp             TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECC
T ss_pred             cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc--CcccEEEcc
Confidence            4678899999987 466 78899999999999999996544  8999999999999999985 665433  889999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      +|++++ +| .+..+++|+.|++++|++++.
T Consensus       115 ~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A          115 NNELRD-TD-SLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             SSCCSB-SG-GGTTCTTCCEEECTTSCCCBC
T ss_pred             CCccCC-Ch-hhcCcccccEEECCCCcCCCC
Confidence            999986 33 588999999999999999875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.13  E-value=1.9e-10  Score=114.57  Aligned_cols=102  Identities=19%  Similarity=0.258  Sum_probs=66.5

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|++++|.++. +| .+..+++|+.|+|++|++++..|  ++.+++|+.|+|++|++++ +| .+..+++|+.|+|++
T Consensus        48 L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           48 IDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH  121 (291)
T ss_dssp             CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred             ccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCC
Confidence            5666777777663 33 46667777777777777775433  6677777777777777764 33 366667777777777


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      |++++.  +.+..+++|+.|++++|++++.
T Consensus       122 n~i~~~--~~l~~l~~L~~L~l~~n~l~~~  149 (291)
T 1h6t_A          122 NGISDI--NGLVHLPQLESLYLGNNKITDI  149 (291)
T ss_dssp             SCCCCC--GGGGGCTTCCEEECCSSCCCCC
T ss_pred             CcCCCC--hhhcCCCCCCEEEccCCcCCcc
Confidence            777652  3566667777777777776654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.13  E-value=1.8e-10  Score=126.27  Aligned_cols=101  Identities=19%  Similarity=0.276  Sum_probs=47.6

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|.+.. +| .+..|++|+.|+|++|.|++..|  ++.+++|+.|+|++|++++ +| .+..+++|+.|+|++
T Consensus        45 L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           45 IDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             CCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTT
T ss_pred             CCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecC
Confidence            4445555555442 22 34555555555555555554332  4455555555555555542 22 344444555555555


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      |++++ + +.+..+++|+.|+|++|+|++
T Consensus       119 N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~  145 (605)
T 1m9s_A          119 NGISD-I-NGLVHLPQLESLYLGNNKITD  145 (605)
T ss_dssp             SCCCC-C-GGGGGCTTCSEEECCSSCCCC
T ss_pred             CCCCC-C-ccccCCCccCEEECCCCccCC
Confidence            55443 1 234444444444444444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.12  E-value=8.9e-13  Score=123.65  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=98.0

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++ +| .+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++ +| .+..+++|+.|+|+
T Consensus        49 ~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~  123 (198)
T 1ds9_A           49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMS  123 (198)
T ss_dssp             TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred             CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence            47889999999997 88 8999999999999999999 789988888999999999999996 66 68889999999999


Q ss_pred             CcccccccC-hhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip-~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|++++.-+ ..+..+++|++|++++|.+++.+|.
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            999995332 5789999999999999999988763

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=1e-10  Score=107.16  Aligned_cols=87  Identities=18%  Similarity=0.181  Sum_probs=77.9

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.|++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++-.|..+..+++|+.|+|+
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            47889999999999888899999999999999999998666667999999999999999995444558999999999999


Q ss_pred             Ccccccc
Q 007711           82 NNDFVGS   88 (592)
Q Consensus        82 ~N~~~g~   88 (592)
                      +|.|...
T Consensus       114 ~N~~~c~  120 (174)
T 2r9u_A          114 NNPWDCE  120 (174)
T ss_dssp             SSCBCTT
T ss_pred             CCCcccc
Confidence            9999854

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.11  E-value=7e-11  Score=128.22  Aligned_cols=96  Identities=23%  Similarity=0.208  Sum_probs=68.8

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|.|++ +|.   .+++|+.|+|++|.|++ ||.   .+++|+.|+|++|+|++ +|. +.  ++|+.|+|++
T Consensus       122 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~  189 (571)
T 3cvr_A          122 LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST  189 (571)
T ss_dssp             CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred             CCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence            5667777777776 665   57778888888888876 665   56778888888888876 777 55  7788888888


Q ss_pred             cccccccChhhhcCCCC-------CEEECCCCCCCccccc
Q 007711           83 NDFVGSLSPEIYKLQVL-------SESQVDEGQLSSAAKK  115 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l-------~~l~l~~n~l~g~~p~  115 (592)
                      |+|+ .+|. +..  +|       +.|+|++|+|+. +|.
T Consensus       190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~  224 (571)
T 3cvr_A          190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPE  224 (571)
T ss_dssp             SCCS-SCCC-CC----------CCEEEECCSSCCCC-CCG
T ss_pred             CCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCH
Confidence            8887 6776 554  56       778888888874 443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.11  E-value=2.2e-11  Score=129.30  Aligned_cols=48  Identities=15%  Similarity=0.088  Sum_probs=22.9

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCC
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEE   50 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~   50 (592)
                      .|+.|++++|.| |.||++|++|++|++|+|++|.+.|.+|.+++++++
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~   59 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE   59 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHH
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchh
Confidence            477889999999 899999999999999999999999999998887654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.09  E-value=5e-10  Score=111.52  Aligned_cols=105  Identities=23%  Similarity=0.317  Sum_probs=87.3

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++. ++ +..+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++ + ..+..+++|+.|+|+
T Consensus        69 ~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~  142 (291)
T 1h6t_A           69 NVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLG  142 (291)
T ss_dssp             TCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECC
T ss_pred             CCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEcc
Confidence            367889999999864 44 8899999999999999986 44 48889999999999999885 4 467888999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++++.  +.+..+++|+.|++++|++++..|
T Consensus       143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            9999865  578889999999999999987655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.09  E-value=5.1e-10  Score=112.45  Aligned_cols=104  Identities=14%  Similarity=0.254  Sum_probs=69.6

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|++++|+++. +| .+..+++|+.|+|++|.+++. |. +..+++|++|+|++|++++ +| .+..+++|+.|+|++
T Consensus        43 L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           43 ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTT
T ss_pred             cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCC
Confidence            5667777777663 44 567777777777777777753 33 6777777777777777764 33 566677777777777


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      |++++ +|. +..+++|+.|++++|++++..+
T Consensus       117 n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~  146 (308)
T 1h6u_A          117 TQITD-VTP-LAGLSNLQVLYLDLNQITNISP  146 (308)
T ss_dssp             SCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCC-chh-hcCCCCCCEEECCCCccCcCcc
Confidence            77765 332 6677777777777777766433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.08  E-value=1.6e-10  Score=116.69  Aligned_cols=110  Identities=14%  Similarity=0.058  Sum_probs=93.1

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCcccc-CCCCCCeeeccCCcccccCCccccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~-~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|++++. |. ...+++|+.|+|
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~L  198 (317)
T 3o53_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDL  198 (317)
T ss_dssp             SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEEC
Confidence            478899999999987777889999999999999999988888774 789999999999999854 43 345889999999


Q ss_pred             cCcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           81 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        81 ~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      ++|++++ +|+.+..+++|+.|++++|++++ +|.
T Consensus       199 s~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~  231 (317)
T 3o53_A          199 SSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEK  231 (317)
T ss_dssp             CSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred             CCCcCCc-chhhhcccCcccEEECcCCcccc-hhh
Confidence            9999995 55668899999999999999985 443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.07  E-value=2.7e-10  Score=114.44  Aligned_cols=105  Identities=20%  Similarity=0.286  Sum_probs=90.1

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++ +|. ++.+++|+.|++++|++++. |. +..+++|+.|+|+
T Consensus        86 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~  159 (308)
T 1h6u_A           86 KITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIG  159 (308)
T ss_dssp             SCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECC
T ss_pred             CCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEcc
Confidence            47889999999986 44 79999999999999999997 454 89999999999999999854 43 8889999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++++. |. +..+++|+.|++++|++++..+
T Consensus       160 ~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          160 NAQVSDL-TP-LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             SSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCcCCCC-hh-hcCCCCCCEEECCCCccCcChh
Confidence            9999864 43 8899999999999999987654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.07  E-value=2.1e-10  Score=119.25  Aligned_cols=110  Identities=23%  Similarity=0.249  Sum_probs=100.5

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCcc-ccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~-~~~~~~L~~l~l   80 (592)
                      .|+.|+|++|.+++..|..+..+++|+.|+|++|.+.+..|..++.+++|++|+|++|+++ .+|.. +..+++|+.|+|
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEEC
Confidence            4788999999999877778999999999999999999988888999999999999999999 67765 588999999999


Q ss_pred             cCcccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           81 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        81 ~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      ++|++++..|..+.++++|+.|++++|++++.
T Consensus       149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            99999988888899999999999999999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.06  E-value=5.8e-10  Score=122.25  Aligned_cols=105  Identities=23%  Similarity=0.321  Sum_probs=94.7

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.|++. |+ +..|++|+.|+|++|.|++ +| .++.+++|+.|+|++|++++ + ..+..+++|+.|+|+
T Consensus        66 ~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls  139 (605)
T 1m9s_A           66 NVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLG  139 (605)
T ss_dssp             TCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECC
T ss_pred             CCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECC
Confidence            478899999999975 44 9999999999999999996 45 79999999999999999996 4 468899999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++++.  ..+..+++|+.|+|++|+|++..|
T Consensus       140 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          140 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             SSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            9999975  679999999999999999999877

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.06  E-value=3.9e-10  Score=110.55  Aligned_cols=102  Identities=17%  Similarity=0.185  Sum_probs=90.1

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++ +|+ +..+++|+.|+|++|++++ +|....  ++|+.|+|++|++++ +| .+..+++|+.|+|+
T Consensus        64 ~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls  136 (263)
T 1xeu_A           64 NLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIR  136 (263)
T ss_dssp             TCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECT
T ss_pred             CCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCcccc--CcccEEEccCCccCC-Ch-hhcCcccccEEECC
Confidence            47899999999996 455 9999999999999999996 665433  999999999999996 44 68999999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      +|++++. | .+..+++|+.|++++|++++.
T Consensus       137 ~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          137 NNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             TSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence            9999974 4 689999999999999999976

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.05  E-value=4.2e-10  Score=110.17  Aligned_cols=137  Identities=12%  Similarity=0.074  Sum_probs=102.6

Q ss_pred             hcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEEEEe
Q 007711          303 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      ...++.|+.+.||+.... +..+++|.........     ...+.+|+++++.+. |..+.++++++...+  ..++|||
T Consensus        19 ~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~-----~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~--~~~lv~e   90 (263)
T 3tm0_A           19 VKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGT-----TYDVEREKDMMLWLEGKLPVPKVLHFERHDG--WSNLLMS   90 (263)
T ss_dssp             EECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTS-----TTCHHHHHHHHHHHTTTSCCCCEEEEEEETT--EEEEEEE
T ss_pred             EeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCC-----HHHHHHHHHHHHHHhcCCCCCeEEEEEecCC--ceEEEEE
Confidence            456777888999999754 6788898875422111     124788999998884 677888999888765  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCC--------------------------------------
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN--------------------------------------  423 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~--------------------------------------  423 (592)
                      |+++.+|.+.+..       ......++.+++++++.||+..                                      
T Consensus        91 ~i~G~~l~~~~~~-------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (263)
T 3tm0_A           91 EADGVLCSEEYED-------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTP  163 (263)
T ss_dssp             CCSSEEHHHHCCT-------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCS
T ss_pred             ecCCeehhhccCC-------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccccc
Confidence            9999988765321       1123467888999999999711                                      


Q ss_pred             -------------------CCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          424 -------------------PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       424 -------------------~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                                         +.++|+|+++.|||++++..+.|.||+.+..
T Consensus       164 ~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          164 FKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             SSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             CCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence                               3489999999999998776678999997653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.04  E-value=4.5e-10  Score=119.32  Aligned_cols=100  Identities=17%  Similarity=0.255  Sum_probs=89.2

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.++| +| +++.+++|+.|+|++|++++ +|  ++.+++|++|++++|++++ +|  ++.+++|+.|+|+
T Consensus        43 ~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~  114 (457)
T 3bz5_A           43 TLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCD  114 (457)
T ss_dssp             TCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECC
T ss_pred             CCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECC
Confidence            47889999999997 46 79999999999999999997 45  8999999999999999997 44  8899999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      +|++++ +|  ++.+++|++|++++|++++.
T Consensus       115 ~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l  142 (457)
T 3bz5_A          115 TNKLTK-LD--VSQNPLLTYLNCARNTLTEI  142 (457)
T ss_dssp             SSCCSC-CC--CTTCTTCCEEECTTSCCSCC
T ss_pred             CCcCCe-ec--CCCCCcCCEEECCCCcccee
Confidence            999997 55  88999999999999999984

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.02  E-value=9e-10  Score=117.39  Aligned_cols=105  Identities=26%  Similarity=0.285  Sum_probs=83.0

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++ + +.+..+++|+.|+|++|.+++..|  ++.+++|+.|++++|++++..|  +..+++|+.|+|+
T Consensus       222 ~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~  295 (466)
T 1o6v_A          222 NLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN  295 (466)
T ss_dssp             TCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             CCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence            36778888888875 3 367888888888888888887655  7888888888888888885433  7778888888888


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++++..|  +..+++|+.|++++|++++..|
T Consensus       296 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          296 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             SSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             CCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence            888887544  7788888888888888888766

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.01  E-value=5.9e-11  Score=120.70  Aligned_cols=110  Identities=18%  Similarity=0.166  Sum_probs=85.0

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccC-CCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~-iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l   80 (592)
                      .++.|+|++|.+++..+. +.++++|+.|+|++|.+++. +|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            356778888888776554 56788888888888888766 7777788888888888888888777777777888888888


Q ss_pred             cCc-cccc-ccChhhhcCCCCCEEECCCC-CCCcc
Q 007711           81 DNN-DFVG-SLSPEIYKLQVLSESQVDEG-QLSSA  112 (592)
Q Consensus        81 ~~N-~~~g-~ip~~~~~~~~l~~l~l~~n-~l~g~  112 (592)
                      ++| .+++ .+|..+.++++|++|++++| ++++.
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~  184 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK  184 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence            888 6776 36666777888888888888 77753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.00  E-value=9.2e-10  Score=116.77  Aligned_cols=79  Identities=23%  Similarity=0.363  Sum_probs=41.9

Q ss_pred             CCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCEEEC
Q 007711           25 THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV  104 (592)
Q Consensus        25 ~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l  104 (592)
                      ++|+.|+|++|++++ +| +++++++|++|++++|++++ +|..+   .+|+.|++++|++++ +| .++++++|+.|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            355555555555554 55 35555555555555555553 44432   255555555555554 44 3555555555555


Q ss_pred             CCCCCCc
Q 007711          105 DEGQLSS  111 (592)
Q Consensus       105 ~~n~l~g  111 (592)
                      ++|++++
T Consensus       203 ~~N~l~~  209 (454)
T 1jl5_A          203 DNNSLKK  209 (454)
T ss_dssp             CSSCCSS
T ss_pred             CCCcCCc
Confidence            5555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.00  E-value=7.7e-11  Score=122.43  Aligned_cols=110  Identities=20%  Similarity=0.224  Sum_probs=93.1

Q ss_pred             ceeecccCCcccc-ccCc---hhhcCCCCCCEEEeeCCccc--c---CCCccccCCCCCCeeeccCCccc----ccCCcc
Q 007711            2 CVMCRNLKDLCLE-GTLA---PEIQSLTHIKSIILRNNSFS--G---IIPEGFGELEELEVLDFGHNNFS----GPLPND   68 (592)
Q Consensus         2 ~~~~l~l~~~~l~-g~~p---~~~~~l~~L~~l~l~~n~l~--g---~iP~~~~~l~~L~~l~l~~N~l~----g~iP~~   68 (592)
                      .|+.|+|++|.++ +.+|   ..+..+++|+.|+|++|.++  |   .+|..+..+++|+.|+|++|+++    +.+|..
T Consensus       160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~  239 (386)
T 2ca6_A          160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  239 (386)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence            4788999999997 5566   46778899999999999988  4   45657888999999999999996    778888


Q ss_pred             ccCCCCCCeEeccCcccccc----cChhhh--cCCCCCEEECCCCCCCc
Q 007711           69 LGINHSLTILLLDNNDFVGS----LSPEIY--KLQVLSESQVDEGQLSS  111 (592)
Q Consensus        69 ~~~~~~L~~l~l~~N~~~g~----ip~~~~--~~~~l~~l~l~~n~l~g  111 (592)
                      +..+++|+.|+|++|.+++.    +|..+.  ++++|+.|+|++|++++
T Consensus       240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            88999999999999999877    666663  48999999999999988

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.00  E-value=1.6e-09  Score=105.59  Aligned_cols=130  Identities=11%  Similarity=0.088  Sum_probs=94.7

Q ss_pred             ccC-cCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCc--eeeeeEEEecCCCcceEEEEe
Q 007711          305 VIG-SSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN--FVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       305 ~lG-~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~n--iv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .++ .|..+.||+....+|..+++|......        ...+.+|+++++.+.+.+  +.+++++....+  ..++|||
T Consensus        26 ~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~--------~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~--~~~~v~e   95 (264)
T 1nd4_A           26 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA--------LNELQDEAARLSWLATTGVPCAAVLDVVTEAG--RDWLLLG   95 (264)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSCT--------TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSS--CEEEEEE
T ss_pred             ecccCCCCceEEEEecCCCCeEEEEeCCccc--------chhhhHHHHHHHHHHhCCCCCCeEEEeccCCC--CCEEEEE
Confidence            344 555699999987778889998764321        134778899888885545  456888877655  5689999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCC--------------------------------------
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN--------------------------------------  423 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~--------------------------------------  423 (592)
                      |+++.+|.  ...     .+   ...++.++++.++.||+..                                      
T Consensus        96 ~i~G~~l~--~~~-----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (264)
T 1nd4_A           96 EVPGQDLL--SSH-----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGL  165 (264)
T ss_dssp             CCSSEETT--TSC-----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTC
T ss_pred             ecCCcccC--cCc-----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCc
Confidence            99998884  211     11   2356777888888888643                                      


Q ss_pred             ------------------CCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          424 ------------------PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       424 ------------------~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                                        +.++|+|++|.||+++++..++|.||+.+..
T Consensus       166 ~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          166 APAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  214 (264)
T ss_dssp             CHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             cHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence                              1299999999999998877778999998654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.99  E-value=8.3e-10  Score=112.69  Aligned_cols=104  Identities=18%  Similarity=0.274  Sum_probs=58.0

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|++++|.+++..+  +..+++|+.|+|++|.+++..+  +..+++|+.|++++|++++ + ..+..+++|+.|++++
T Consensus       201 L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~  274 (347)
T 4fmz_A          201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGS  274 (347)
T ss_dssp             CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCS
T ss_pred             cceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccC
Confidence            4555666666654322  5566666666666666654322  5556666666666666553 2 3455555666666666


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      |++++.  +.+..+++|+.|++++|++++..|
T Consensus       275 n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~  304 (347)
T 4fmz_A          275 NQISDI--SVLNNLSQLNSLFLNNNQLGNEDM  304 (347)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred             CccCCC--hhhcCCCCCCEEECcCCcCCCcCh
Confidence            665542  235555666666666666655444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.98  E-value=9.8e-10  Score=116.69  Aligned_cols=102  Identities=17%  Similarity=0.135  Sum_probs=86.5

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+.|.+  .+..+++|+.|+|++|++++ +|  ++.+++|+.|++++|++++.   .+..+++|+.|+|+
T Consensus       149 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls  220 (457)
T 3bz5_A          149 QLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCS  220 (457)
T ss_dssp             TCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECC
T ss_pred             cCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECc
Confidence            3678889999777777  37889999999999999997 66  78889999999999999864   47888999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++++ +|  ++.+++|+.|++++|++++..+
T Consensus       221 ~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          221 SNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             SSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred             CCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence            999998 67  8888999999999999988644

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.98  E-value=4.9e-10  Score=114.41  Aligned_cols=107  Identities=20%  Similarity=0.291  Sum_probs=96.9

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++ +|+ +..+++|+.|+|++|.+++ + ..+..+++|+.|++++|++++ + ..+..+++|+.|+|+
T Consensus       222 ~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          222 RLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLN  295 (347)
T ss_dssp             TCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECC
T ss_pred             cCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECc
Confidence            47889999999986 454 9999999999999999997 3 468999999999999999986 4 458889999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|.+++..|..++++++|+.|++++|++++..|
T Consensus       296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             SSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             CCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            999999999999999999999999999999877

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.97  E-value=8.3e-10  Score=117.69  Aligned_cols=103  Identities=20%  Similarity=0.244  Sum_probs=88.6

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++..|  +..+++|+.|+|++|.+++..|  +..+++|+.|++++|++++..|  +..+++|+.|+|+
T Consensus       244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~  317 (466)
T 1o6v_A          244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY  317 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred             CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence            47889999999987554  8899999999999999997544  8889999999999999986544  7888999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      +|++++..|  +..+++|+.|++++|++++.
T Consensus       318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             SSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             CCcCCCchh--hccCccCCEeECCCCccCCc
Confidence            999998776  78899999999999999885

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.96  E-value=9.2e-10  Score=120.87  Aligned_cols=57  Identities=25%  Similarity=0.240  Sum_probs=33.1

Q ss_pred             CCCCeeeccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           49 EELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        49 ~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      ++|+.|+|++|++++ +|   ..+++|+.|+|++|+++ .+|.   .+++|+.|+|++|+|+ .+|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp  277 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLP  277 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCC
Confidence            456666666666663 55   33455666666666665 4554   4556666666666666 344

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.95  E-value=3.3e-09  Score=108.89  Aligned_cols=143  Identities=10%  Similarity=0.116  Sum_probs=103.3

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEee--ecccCCCchhHHHHHHHHHHHHhcCC--CCceeeeeEEEecCCC-cceEE
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVS--VASAKDWPKNLEVQFRKKIDTLSKVN--HKNFVNLIGFCEEEEP-FTRMM  378 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~--~~~~~~~~~~~~~~f~~e~~~l~~l~--H~niv~l~g~~~~~~~-~~~~l  378 (592)
                      +.++.|.++.||+....+ ..+++|+..  .....    .....+.+|+++++.+.  +..+.++++++.+... ...++
T Consensus        44 ~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~----~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~  118 (359)
T 3dxp_A           44 EQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLL----PSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFY  118 (359)
T ss_dssp             EECCC-CCSCEEEEECSS-CEEEEECCCC--------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEE
T ss_pred             EEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCC----CcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEE
Confidence            568999999999998755 566677553  22110    12346788999998886  4567889998876531 13689


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC------------------------------------
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL------------------------------------  422 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~------------------------------------  422 (592)
                      ||||+++..+.+..    ...++...+..++.++++.|+.||..                                    
T Consensus       119 vme~v~G~~l~~~~----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (359)
T 3dxp_A          119 IMEFVSGRVLWDQS----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESI  194 (359)
T ss_dssp             EEECCCCBCCCCTT----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCC
T ss_pred             EEEecCCeecCCCc----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCC
Confidence            99999988775422    12467888889999999999999963                                    


Q ss_pred             --------------------CCCeEeeCcCCCCeEEcCCCc--eEEecCCcchhh
Q 007711          423 --------------------NPPIAHNYLNSSAVHLTEDYA--AKLSDLSFWNEI  455 (592)
Q Consensus       423 --------------------~~~ivH~dLk~~NiLl~~~~~--~ki~DfGla~~~  455 (592)
                                          .+.++|||+++.|||+++++.  +.|.||+.+..-
T Consensus       195 ~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g  249 (359)
T 3dxp_A          195 PAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG  249 (359)
T ss_dssp             HHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred             hHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence                                245999999999999997753  689999987653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.95  E-value=2e-10  Score=119.27  Aligned_cols=113  Identities=20%  Similarity=0.227  Sum_probs=90.5

Q ss_pred             ceeecccCCccccccC----chhhcCCCCCCEEEeeC---CccccCCCccc-------cCCCCCCeeeccCCcccc----
Q 007711            2 CVMCRNLKDLCLEGTL----APEIQSLTHIKSIILRN---NSFSGIIPEGF-------GELEELEVLDFGHNNFSG----   63 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~----p~~~~~l~~L~~l~l~~---n~l~g~iP~~~-------~~l~~L~~l~l~~N~l~g----   63 (592)
                      .|+.|+|++|.+++..    +..+..+++|+.|+|++   |+++|.+|..+       ..+++|++|+|++|++++    
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence            3788999999988763    44477899999999988   46777888776       688999999999999987    


Q ss_pred             cCCccccCCCCCCeEeccCcccccccChhhhc----C---------CCCCEEECCCCCCC-cccc
Q 007711           64 PLPNDLGINHSLTILLLDNNDFVGSLSPEIYK----L---------QVLSESQVDEGQLS-SAAK  114 (592)
Q Consensus        64 ~iP~~~~~~~~L~~l~l~~N~~~g~ip~~~~~----~---------~~l~~l~l~~n~l~-g~~p  114 (592)
                      .+|..+..+++|+.|+|++|.+++..+..+..    +         ++|++|++++|+++ +.++
T Consensus       113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  177 (386)
T 2ca6_A          113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK  177 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred             HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence            57888888899999999999997655544443    3         89999999999997 5555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.94  E-value=2e-10  Score=116.67  Aligned_cols=105  Identities=12%  Similarity=0.043  Sum_probs=68.0

Q ss_pred             eeecccCCccccccCchhhcCC--CCCCEEEeeCCccccCCCccccCCCCCCeeeccCCccccc-CCccccCCCCCCeEe
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSL--THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP-LPNDLGINHSLTILL   79 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l--~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~-iP~~~~~~~~L~~l~   79 (592)
                      ++.++|+++.+.   |..+..+  ++++.|++++|.+.+.+|. +..+++|+.|+|++|++++. +|..+..+++|+.|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            345566666655   3445555  6667777777777665554 45566777777777766655 666666666777777


Q ss_pred             ccCcccccccChhhhcCCCCCEEECCCC-CCCc
Q 007711           80 LDNNDFVGSLSPEIYKLQVLSESQVDEG-QLSS  111 (592)
Q Consensus        80 l~~N~~~g~ip~~~~~~~~l~~l~l~~n-~l~g  111 (592)
                      |++|.+++.+|..++++++|++|++++| .+++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~  157 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE  157 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH
Confidence            7777766666666666777777777766 5654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.91  E-value=1.4e-09  Score=111.21  Aligned_cols=86  Identities=16%  Similarity=0.211  Sum_probs=75.4

Q ss_pred             ceeecccCC-ccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEec
Q 007711            2 CVMCRNLKD-LCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~-~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++ |.|++..|..|..|++|+.|+|++|+|+|..|..|+++++|+.|+|++|+|++ +|..+.....|+.|+|
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTCSCCCCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcccCCceEEEe
Confidence            378999996 99998777889999999999999999999999999999999999999999995 5554443334999999


Q ss_pred             cCcccccc
Q 007711           81 DNNDFVGS   88 (592)
Q Consensus        81 ~~N~~~g~   88 (592)
                      .+|.|...
T Consensus       111 ~~N~~~c~  118 (347)
T 2ifg_A          111 SGNPLHCS  118 (347)
T ss_dssp             CSSCCCCC
T ss_pred             eCCCccCC
Confidence            99999854

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.88  E-value=5.3e-10  Score=115.05  Aligned_cols=110  Identities=16%  Similarity=0.079  Sum_probs=89.2

Q ss_pred             ecccCCccccccCchhhcCCCCCCEEEeeCCccccCCC----ccccCCC-CCCeeeccCCcccccCCccccCC-----CC
Q 007711            5 CRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP----EGFGELE-ELEVLDFGHNNFSGPLPNDLGIN-----HS   74 (592)
Q Consensus         5 ~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP----~~~~~l~-~L~~l~l~~N~l~g~iP~~~~~~-----~~   74 (592)
                      .++|+.|+++|.+|..+...++|+.|+|++|.+++.-+    ..+..++ +|+.|+|++|++++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788889998888877777779999999999887766    6777787 89999999999887777766654     88


Q ss_pred             CCeEeccCcccccccChhhhcC-----CCCCEEECCCCCCCcccc
Q 007711           75 LTILLLDNNDFVGSLSPEIYKL-----QVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        75 L~~l~l~~N~~~g~ip~~~~~~-----~~l~~l~l~~n~l~g~~p  114 (592)
                      |+.|+|++|.+++..+..++..     ++|++|++++|++++..+
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence            9999999999888777766554     789999999999877644

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.85  E-value=8.7e-10  Score=113.41  Aligned_cols=112  Identities=18%  Similarity=0.157  Sum_probs=95.1

Q ss_pred             ceeecccCCccccccCc----hhhcCCC-CCCEEEeeCCccccCCCccccCC-----CCCCeeeccCCcccccCCccccC
Q 007711            2 CVMCRNLKDLCLEGTLA----PEIQSLT-HIKSIILRNNSFSGIIPEGFGEL-----EELEVLDFGHNNFSGPLPNDLGI   71 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p----~~~~~l~-~L~~l~l~~n~l~g~iP~~~~~l-----~~L~~l~l~~N~l~g~iP~~~~~   71 (592)
                      .|+.|+|++|.+++.-+    ..+..++ +|+.|+|++|.+++..+..+..+     ++|+.|+|++|++++..+..+..
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            37899999999997766    6788898 89999999999999888888775     99999999999999877765443


Q ss_pred             ----C-CCCCeEeccCcccccccChhhhc-----CCCCCEEECCCCCCCccc
Q 007711           72 ----N-HSLTILLLDNNDFVGSLSPEIYK-----LQVLSESQVDEGQLSSAA  113 (592)
Q Consensus        72 ----~-~~L~~l~l~~N~~~g~ip~~~~~-----~~~l~~l~l~~n~l~g~~  113 (592)
                          + ++|+.|+|++|++++..+..++.     ..+|++|+|++|+++...
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  154 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS  154 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence                4 89999999999999877766654     369999999999998643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.83  E-value=8.5e-09  Score=113.20  Aligned_cols=15  Identities=33%  Similarity=0.297  Sum_probs=9.9

Q ss_pred             CCCCEEECCCCCCCc
Q 007711           97 QVLSESQVDEGQLSS  111 (592)
Q Consensus        97 ~~l~~l~l~~n~l~g  111 (592)
                      ++|+.|++++|+|++
T Consensus       221 ~~L~~L~Ls~N~L~~  235 (622)
T 3g06_A          221 SGLKELIVSGNRLTS  235 (622)
T ss_dssp             TTCCEEECCSSCCSC
T ss_pred             CCCCEEEccCCccCc
Confidence            556666677666665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.70  E-value=1.3e-08  Score=104.14  Aligned_cols=106  Identities=8%  Similarity=0.067  Sum_probs=86.0

Q ss_pred             cccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCc-cccCCCCCCe-EeccCc
Q 007711            6 RNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTI-LLLDNN   83 (592)
Q Consensus         6 l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~-~~~~~~~L~~-l~l~~N   83 (592)
                      ++-++++|+ .||..+  .++++.|+|++|+|+..-+..|.++++|++|+|++|++.+.+|. .|..+++|.. +.+++|
T Consensus        14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            455677887 688777  36899999999999954445689999999999999999888886 4577887765 667789


Q ss_pred             ccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           84 DFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        84 ~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      ++++..|..+..+++|+.|++++|++++..+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             cccccCchhhhhccccccccccccccccCCc
Confidence            9998778888999999999999999987655

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.65  E-value=3.3e-08  Score=98.90  Aligned_cols=178  Identities=11%  Similarity=0.126  Sum_probs=113.2

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCc--eeeeeEEEecCCC-cceEEE
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKN--FVNLIGFCEEEEP-FTRMMV  379 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~n--iv~l~g~~~~~~~-~~~~lv  379 (592)
                      +.++.|.+..||+..    ..+++|.....       .....+.+|+++++.+. +..  +.+.++++..... ...++|
T Consensus        26 ~~~~~G~~n~v~~v~----~~~vlR~~~~~-------~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~v   94 (304)
T 3sg8_A           26 EISGEGNDCIAYEIN----RDFIFKFPKHS-------RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAG   94 (304)
T ss_dssp             CEEEECSSEEEEEST----TSEEEEEESSH-------HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEE
T ss_pred             EecCCCCcceEEEEC----CEEEEEecCCc-------chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEE
Confidence            458899999999853    45677764311       23567889999998873 333  3445554433221 124789


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC-------------------------------------
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-------------------------------------  422 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~-------------------------------------  422 (592)
                      |||+++..|.+...    ..++..++..++.++++.++.||..                                     
T Consensus        95 m~~i~G~~l~~~~~----~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
T 3sg8_A           95 FTKIKGVPLTPLLL----NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQM  170 (304)
T ss_dssp             EECCCCEECCHHHH----HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred             EcccCCeECCcccc----ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccH
Confidence            99999988764322    2345566667777777777777741                                     


Q ss_pred             -------------------CCCeEeeCcCCCCeEEcC--CCceEEecCCcchhhhhhhh-h---hc----cc-------c
Q 007711          423 -------------------NPPIAHNYLNSSAVHLTE--DYAAKLSDLSFWNEIAMAEM-A---AT----SK-------K  466 (592)
Q Consensus       423 -------------------~~~ivH~dLk~~NiLl~~--~~~~ki~DfGla~~~~~~~~-~---~~----~~-------~  466 (592)
                                         .+.++|+|+++.||++++  +..+.|.||+.+........ +   ..    .+       .
T Consensus       171 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~  250 (304)
T 3sg8_A          171 KKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILN  250 (304)
T ss_dssp             HHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHH
Confidence                               135899999999999998  56678999988754321110 0   00    00       0


Q ss_pred             cCCC---CCC----CCCCcchhhHHHHHHHHhCCCcc
Q 007711          467 LSSA---PSA----SLESNVYNFGVLLFEMVTGRLPY  496 (592)
Q Consensus       467 ~~~~---~~~----s~ksDVwSfGvvl~El~tG~~P~  496 (592)
                      .+..   ++.    ....+.|++|+++|++.+|+.+|
T Consensus       251 ~Y~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~  287 (304)
T 3sg8_A          251 HYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDW  287 (304)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            0100   010    11158999999999999999887

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.61  E-value=3.3e-09  Score=112.64  Aligned_cols=110  Identities=17%  Similarity=0.121  Sum_probs=87.3

Q ss_pred             ceeecccCCcccccc----CchhhcCCCCCCEEEeeCCccccCCCccccC-----CCCCCeeeccCCccccc----CCcc
Q 007711            2 CVMCRNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSGIIPEGFGE-----LEELEVLDFGHNNFSGP----LPND   68 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~----~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~-----l~~L~~l~l~~N~l~g~----iP~~   68 (592)
                      .|+.|+|++|.+++.    ++..+..+++|+.|+|++|.+++..+..+..     .++|+.|+|++|++++.    +|..
T Consensus       257 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  336 (461)
T 1z7x_W          257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV  336 (461)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence            478899999998865    7888888999999999999987654544433     26899999999988865    5666


Q ss_pred             ccCCCCCCeEeccCcccccccChhhhc-----CCCCCEEECCCCCCCc
Q 007711           69 LGINHSLTILLLDNNDFVGSLSPEIYK-----LQVLSESQVDEGQLSS  111 (592)
Q Consensus        69 ~~~~~~L~~l~l~~N~~~g~ip~~~~~-----~~~l~~l~l~~n~l~g  111 (592)
                      +..+++|+.|+|++|.+++..+..++.     .++|+.|++++|++++
T Consensus       337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            777788999999999888776666654     6788899999998885

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.60  E-value=3.6e-08  Score=100.77  Aligned_cols=109  Identities=13%  Similarity=0.063  Sum_probs=89.7

Q ss_pred             ceeecccCCccccccCch-hhcCCCCCCEEEeeCCccccCCCc-cccCCCCCCe-eeccCCcccccCCccccCCCCCCeE
Q 007711            2 CVMCRNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEV-LDFGHNNFSGPLPNDLGINHSLTIL   78 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~-~~~~l~~L~~l~l~~n~l~g~iP~-~~~~l~~L~~-l~l~~N~l~g~iP~~~~~~~~L~~l   78 (592)
                      .++.|+|++|.|+ .||+ .|.++++|+.|+|++|++.+.+|. .|.++++|.. +.+.+|++++-.|..|..+++|+.|
T Consensus        31 ~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           31 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            3688999999998 5665 589999999999999999888885 5788888764 6777899997777888999999999


Q ss_pred             eccCcccccccChhhhcCCCCCEEECCC-CCCCc
Q 007711           79 LLDNNDFVGSLSPEIYKLQVLSESQVDE-GQLSS  111 (592)
Q Consensus        79 ~l~~N~~~g~ip~~~~~~~~l~~l~l~~-n~l~g  111 (592)
                      ++++|++++..+..+.....+..+++.+ |++..
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~  143 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT  143 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred             cccccccccCCchhhcccchhhhhhhcccccccc
Confidence            9999999977666666777777888865 44443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.56  E-value=2.6e-08  Score=96.82  Aligned_cols=66  Identities=20%  Similarity=0.305  Sum_probs=34.1

Q ss_pred             CCCCCCEEEeeCCcccc--CCCccccCCCCCCeeeccCCcccccCCccccCCC--CCCeEeccCcccccccC
Q 007711           23 SLTHIKSIILRNNSFSG--IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINH--SLTILLLDNNDFVGSLS   90 (592)
Q Consensus        23 ~l~~L~~l~l~~n~l~g--~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~--~L~~l~l~~N~~~g~ip   90 (592)
                      ++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|+.|+|++|.+++.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            45555555555555555  4445555555555555555555542  2222222  55555555555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.54  E-value=5.6e-09  Score=110.81  Aligned_cols=113  Identities=16%  Similarity=0.192  Sum_probs=93.2

Q ss_pred             ceeecccCCcccccc----Cchh-hcCCCCCCEEEeeCCccccC----CCccccCCCCCCeeeccCCcccccCCccccC-
Q 007711            2 CVMCRNLKDLCLEGT----LAPE-IQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGPLPNDLGI-   71 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~----~p~~-~~~l~~L~~l~l~~n~l~g~----iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~-   71 (592)
                      .|+.|+|++|.+++.    +++. +..+++|+.|+|++|.+++.    +|..+..+++|+.|+|++|.+++.-+..+.. 
T Consensus       228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  307 (461)
T 1z7x_W          228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET  307 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred             CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence            478899999998764    2233 34689999999999999975    7888888999999999999998655444432 


Q ss_pred             ----CCCCCeEeccCcccccc----cChhhhcCCCCCEEECCCCCCCcccc
Q 007711           72 ----NHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        72 ----~~~L~~l~l~~N~~~g~----ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                          .++|+.|+|++|.+++.    +|..+..+++|++|++++|++++..+
T Consensus       308 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  358 (461)
T 1z7x_W          308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV  358 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred             hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence                36999999999999976    67778889999999999999987543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.49  E-value=2.8e-08  Score=102.28  Aligned_cols=111  Identities=17%  Similarity=0.142  Sum_probs=83.2

Q ss_pred             ceeecccCCccccccCchhh-cCCCCCCEEEeeCCccccCCCccc-----cCCCCCCeeeccCCcccc----cCCccccC
Q 007711            2 CVMCRNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGF-----GELEELEVLDFGHNNFSG----PLPNDLGI   71 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~-~~l~~L~~l~l~~n~l~g~iP~~~-----~~l~~L~~l~l~~N~l~g----~iP~~~~~   71 (592)
                      .|+.|+|++|.|+..-...+ ..+++|+.|+|++|.|+..-...+     ....+|+.|+|++|+++.    .++..+..
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  181 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG  181 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence            47889999999875433333 345688999999999876544444     246789999999999874    24455567


Q ss_pred             CCCCCeEeccCcccccc----cChhhhcCCCCCEEECCCCCCCcc
Q 007711           72 NHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        72 ~~~L~~l~l~~N~~~g~----ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      +++|+.|+|++|.++..    ++..+...++|+.|+|++|+++..
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence            88899999999998853    455667788999999999998753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=3.8e-08  Score=95.65  Aligned_cols=92  Identities=20%  Similarity=0.216  Sum_probs=70.9

Q ss_pred             cCCCCCCE--EEeeCC---ccccCCCccccCCCCCCeeeccCCcccc--cCCccccCCCCCCeEeccCcccccccChhhh
Q 007711           22 QSLTHIKS--IILRNN---SFSGIIPEGFGELEELEVLDFGHNNFSG--PLPNDLGINHSLTILLLDNNDFVGSLSPEIY   94 (592)
Q Consensus        22 ~~l~~L~~--l~l~~n---~l~g~iP~~~~~l~~L~~l~l~~N~l~g--~iP~~~~~~~~L~~l~l~~N~~~g~ip~~~~   94 (592)
                      ...+.|..  ++++.|   .+.+.++....++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++.  ..+.
T Consensus       138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~  215 (267)
T 3rw6_A          138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELD  215 (267)
T ss_dssp             GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGG
T ss_pred             CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhh
Confidence            33344444  566777   4444444433568999999999999998  7778888999999999999999976  4455


Q ss_pred             cCC--CCCEEECCCCCCCccccc
Q 007711           95 KLQ--VLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        95 ~~~--~l~~l~l~~n~l~g~~p~  115 (592)
                      .+.  .|++|+|++|.+++.+|.
T Consensus       216 ~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          216 KIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             GGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hcccCCcceEEccCCcCccccCc
Confidence            555  999999999999998773

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.28  E-value=8.7e-08  Score=98.60  Aligned_cols=110  Identities=13%  Similarity=0.062  Sum_probs=84.4

Q ss_pred             ceeecccCCccccccCchhhcC-----CCCCCEEEeeCCccccCCCcccc-CCCCCCeeeccCCcccccCCccc-----c
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQS-----LTHIKSIILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFSGPLPNDL-----G   70 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~-----l~~L~~l~l~~n~l~g~iP~~~~-~l~~L~~l~l~~N~l~g~iP~~~-----~   70 (592)
                      .|+.|+|++|.|+..-...+..     ..+|+.|+|++|.++..-...+. .+++|+.|+|++|+++..-...+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            4788999999998654444333     37999999999999765443333 46789999999999975443333     3


Q ss_pred             CCCCCCeEeccCccccc----ccChhhhcCCCCCEEECCCCCCCc
Q 007711           71 INHSLTILLLDNNDFVG----SLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        71 ~~~~L~~l~l~~N~~~g----~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      ..++|+.|+|++|.++.    .++..+..+++|++|+|++|+|+.
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~  197 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD  197 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence            46789999999999975    355566789999999999999975

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.23  E-value=1.4e-07  Score=103.40  Aligned_cols=110  Identities=10%  Similarity=0.024  Sum_probs=70.0

Q ss_pred             eeecccCCccccccCchhhcC-CCCCCEEEee----CCccccC-----CCccccCCCCCCeeeccC--CcccccCCcccc
Q 007711            3 VMCRNLKDLCLEGTLAPEIQS-LTHIKSIILR----NNSFSGI-----IPEGFGELEELEVLDFGH--NNFSGPLPNDLG   70 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~-l~~L~~l~l~----~n~l~g~-----iP~~~~~l~~L~~l~l~~--N~l~g~iP~~~~   70 (592)
                      |+.|+|..|.+++..+..++. +++|+.|+|+    .|++++.     ++..+.++++|+.|+|++  |.+++..+..+.
T Consensus       380 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~  459 (592)
T 3ogk_B          380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG  459 (592)
T ss_dssp             CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred             CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence            566777777777776666665 7777777775    6677653     444455677777777763  235555444443


Q ss_pred             -CCCCCCeEeccCccccc-ccChhhhcCCCCCEEECCCCCCCcc
Q 007711           71 -INHSLTILLLDNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        71 -~~~~L~~l~l~~N~~~g-~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                       .+++|+.|+|++|++++ .++..+..+++|+.|++++|.+++.
T Consensus       460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  503 (592)
T 3ogk_B          460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER  503 (592)
T ss_dssp             HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred             HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence             26667777777777765 3444456667777777777776543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.18  E-value=3.1e-07  Score=84.59  Aligned_cols=108  Identities=19%  Similarity=0.143  Sum_probs=57.2

Q ss_pred             eeecccCCc-ccccc----CchhhcCCCCCCEEEeeCCccccC----CCccccCCCCCCeeeccCCccccc----CCccc
Q 007711            3 VMCRNLKDL-CLEGT----LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDL   69 (592)
Q Consensus         3 ~~~l~l~~~-~l~g~----~p~~~~~l~~L~~l~l~~n~l~g~----iP~~~~~l~~L~~l~l~~N~l~g~----iP~~~   69 (592)
                      |+.|+|++| .+...    +...+...++|+.|+|++|.|...    +...+...+.|+.|+|++|+++..    +...+
T Consensus        38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L  117 (185)
T 1io0_A           38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL  117 (185)
T ss_dssp             CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG
T ss_pred             CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH
Confidence            455666666 55422    334455556666666666666432    233333445566666666666532    33444


Q ss_pred             cCCCCCCeEec--cCcccccc----cChhhhcCCCCCEEECCCCCCC
Q 007711           70 GINHSLTILLL--DNNDFVGS----LSPEIYKLQVLSESQVDEGQLS  110 (592)
Q Consensus        70 ~~~~~L~~l~l--~~N~~~g~----ip~~~~~~~~l~~l~l~~n~l~  110 (592)
                      ...++|+.|+|  ++|.+...    +...+...++|++|+|+.|.+.
T Consensus       118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            45556666666  55666533    2233334466666666666554

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.15  E-value=1.1e-05  Score=80.62  Aligned_cols=135  Identities=11%  Similarity=0.048  Sum_probs=86.2

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCC---ceeeeeEEEecCCCcceEEEE
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK---NFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~---niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.++.|....||+.    |..+++|+...       ......+.+|+++|..+.+.   .+.+.++++..... ..++||
T Consensus        25 ~~l~~G~~n~v~~v----g~~~VlR~~~~-------~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g-~~~~v~   92 (306)
T 3tdw_A           25 ESLGEGFRNYAILV----NGDWVFRFPKS-------QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDG-NPFVGY   92 (306)
T ss_dssp             EEEEECSSEEEEEE----TTTEEEEEESS-------HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTS-CEEEEE
T ss_pred             eecCCCcceeEEEE----CCEEEEEecCC-------chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCC-ceEEEE
Confidence            45788888899987    45677776321       22356789999999998653   35567777652221 468999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc---------------------------------------
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ---------------------------------------  421 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~---------------------------------------  421 (592)
                      ||+++..+.+...    ..++...+..++.++++.|+.||+                                       
T Consensus        93 e~i~G~~l~~~~~----~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~  168 (306)
T 3tdw_A           93 RKVQGQILGEDGM----AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESL  168 (306)
T ss_dssp             ECCCSEECHHHHH----TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred             eccCCeECchhhh----hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhh
Confidence            9999887765211    012223333333333333333332                                       


Q ss_pred             -------------------CCCCeEeeCcCCCCeEEcC---CCc-eEEecCCcchh
Q 007711          422 -------------------LNPPIAHNYLNSSAVHLTE---DYA-AKLSDLSFWNE  454 (592)
Q Consensus       422 -------------------~~~~ivH~dLk~~NiLl~~---~~~-~ki~DfGla~~  454 (592)
                                         ..+.++|+|+++.||++++   ++. +.|.||+.+..
T Consensus       169 ~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          169 RDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             HHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             HHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence                               2335799999999999997   344 58999997654

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.14  E-value=1e-05  Score=78.94  Aligned_cols=134  Identities=13%  Similarity=0.102  Sum_probs=85.4

Q ss_pred             ccCcCCCe-EEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEEEEe
Q 007711          305 VIGSSPIG-TVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       305 ~lG~G~~g-~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+..|..| .||+.... ++..+.+|.-..        ....++.+|...|+.+. +--+.++++++...+  ..++|||
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~--------~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~--~~~lvme  100 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG--------SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPD--DAWLLTT  100 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEET--------HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETT--EEEEEEE
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCC--------CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECC--eEEEEEE
Confidence            34455555 68987754 456777876532        23456888999988774 334667888888776  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc----------------------------------------
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ----------------------------------------  421 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~----------------------------------------  421 (592)
                      ++++.++.+.....      ......++.+++..++-||.                                        
T Consensus       101 ~l~G~~~~~~~~~~------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (272)
T 4gkh_A          101 AIPGKTAFQVLEEY------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGW  174 (272)
T ss_dssp             CCCSEEHHHHHHHC------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTC
T ss_pred             eeCCccccccccCC------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccch
Confidence            99987765432110      00111222222222222221                                        


Q ss_pred             ----------------CCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          422 ----------------LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       422 ----------------~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                                      ..+.++|+|+.+.|||++++..+-|.||+.+..
T Consensus       175 ~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          175 PVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI  223 (272)
T ss_dssp             CHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence                            112489999999999999887778999998754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.07  E-value=6.3e-07  Score=98.16  Aligned_cols=103  Identities=19%  Similarity=0.160  Sum_probs=66.6

Q ss_pred             eeecccCCcc-ccc-cCchhhcCCCCCCEEEeeCCccccC----CCccccCCCCCCeeeccCCccc----ccCCccccCC
Q 007711            3 VMCRNLKDLC-LEG-TLAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFS----GPLPNDLGIN   72 (592)
Q Consensus         3 ~~~l~l~~~~-l~g-~~p~~~~~l~~L~~l~l~~n~l~g~----iP~~~~~l~~L~~l~l~~N~l~----g~iP~~~~~~   72 (592)
                      |+.|+|+++. ++. .++..+.++++|+.|+|++|.+++.    ++..+.++++|+.|+|++|.++    +.++..+..+
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            6667776665 221 1333334677777777777777665    4444556777777777777776    3444455567


Q ss_pred             CCCCeEeccCcccccccChhhhcCCCCCEEECCC
Q 007711           73 HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDE  106 (592)
Q Consensus        73 ~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~  106 (592)
                      ++|+.|+|++|.+.+ +|..+.++++|+.|+++.
T Consensus       220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred             CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence            777777777777775 566666677777776653

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.95  E-value=3.2e-05  Score=78.78  Aligned_cols=84  Identities=7%  Similarity=0.031  Sum_probs=52.4

Q ss_pred             ccc-CcCCCeEEEEEEeC-------CCcEEEEEEeeeccc-CCCchhHHHHHHHHHHHHhcCC-C--CceeeeeEEEecC
Q 007711          304 NVI-GSSPIGTVYKGTLS-------NGVEIAVASVSVASA-KDWPKNLEVQFRKKIDTLSKVN-H--KNFVNLIGFCEEE  371 (592)
Q Consensus       304 ~~l-G~G~~g~Vy~g~~~-------~~~~vavk~~~~~~~-~~~~~~~~~~f~~e~~~l~~l~-H--~niv~l~g~~~~~  371 (592)
                      +.| +.|....+|+....       ++..+++|....... ....   ...+.+|+.+++.+. +  -.+.++++++...
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~---~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~  102 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFP---TYRLDHQFEVIRLVGELTDVPVPRVRWIETTG  102 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSS---CCCHHHHHHHHHHHHHHCCSCCCCEEEEECSS
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCc---hhHHHHHHHHHHHHhhcCCCCCCcEEEEccCC
Confidence            456 78888999998764       256777776533220 0000   124667888877774 2  3567788887654


Q ss_pred             CC-cceEEEEeeCCCCCchh
Q 007711          372 EP-FTRMMVFEYAPNGTLFE  390 (592)
Q Consensus       372 ~~-~~~~lv~Ey~~~gsL~~  390 (592)
                      .. ...++||||+++..+.+
T Consensus       103 ~~~g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A          103 DVLGTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             TTTSSCEEEEECCCCBCCCB
T ss_pred             CccCCceEEEEecCCCChhh
Confidence            21 13579999999877653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.69  E-value=1.2e-05  Score=82.04  Aligned_cols=107  Identities=14%  Similarity=0.129  Sum_probs=70.5

Q ss_pred             ceeecccCCcc-ccccCchhhcCCCCCCEEEeeCCccccCCCcccc--CCCCCCeeeccC--Cccccc--C---Cccc--
Q 007711            2 CVMCRNLKDLC-LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFG--ELEELEVLDFGH--NNFSGP--L---PNDL--   69 (592)
Q Consensus         2 ~~~~l~l~~~~-l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~--~l~~L~~l~l~~--N~l~g~--i---P~~~--   69 (592)
                      .|+.|+|++|. +  .+++ + .+++|+.|+|..|.++...-..++  .+++|+.|+|+.  |...|.  +   -..+  
T Consensus       173 ~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          173 LLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             TCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            36677776662 2  2444 4 378899999988877654434444  678888888863  332222  1   1122  


Q ss_pred             cCCCCCCeEeccCcccccccChhhh---cCCCCCEEECCCCCCCcc
Q 007711           70 GINHSLTILLLDNNDFVGSLSPEIY---KLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        70 ~~~~~L~~l~l~~N~~~g~ip~~~~---~~~~l~~l~l~~n~l~g~  112 (592)
                      ..+++|+.|+|.+|.+.+..+..+.   .+++|+.|+|+.|+++..
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence            2478899999988888866655554   467889999998888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.69  E-value=6.3e-05  Score=75.73  Aligned_cols=88  Identities=11%  Similarity=0.080  Sum_probs=67.3

Q ss_pred             CCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCC-ccccCCCCCC-eEeccCcccccccChhhhcCCCCC
Q 007711           23 SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLT-ILLLDNNDFVGSLSPEIYKLQVLS  100 (592)
Q Consensus        23 ~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP-~~~~~~~~L~-~l~l~~N~~~g~ip~~~~~~~~l~  100 (592)
                      .+++|+.|+|++|++...-+..|.+|.+|+.++|++| +. .|+ ..|..+.+|+ .+++.+ +++-.-+..|.+|.+|+
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            3788899999988888544456888888999999888 65 455 4577888888 888887 66533345788888999


Q ss_pred             EEECCCCCCCccc
Q 007711          101 ESQVDEGQLSSAA  113 (592)
Q Consensus       101 ~l~l~~n~l~g~~  113 (592)
                      .++++.|+++..-
T Consensus       301 ~l~l~~n~i~~I~  313 (329)
T 3sb4_A          301 YVLATGDKITTLG  313 (329)
T ss_dssp             EEEECSSCCCEEC
T ss_pred             EEEeCCCccCccc
Confidence            9998888887543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.67  E-value=2.6e-06  Score=93.16  Aligned_cols=110  Identities=6%  Similarity=-0.020  Sum_probs=81.8

Q ss_pred             ceeecccCCccccccCchhhc-CCCCCCEEEee--C----Ccccc-----CCCccccCCCCCCeeeccCCcccccCCccc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQ-SLTHIKSIILR--N----NSFSG-----IIPEGFGELEELEVLDFGHNNFSGPLPNDL   69 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~-~l~~L~~l~l~--~----n~l~g-----~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~   69 (592)
                      .|+.|.+.+|.+++..+..+. .+++|+.|+|+  +    |.+++     .++..+..+++|+.|+|++ ++++..+..+
T Consensus       373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l  451 (594)
T 2p1m_B          373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI  451 (594)
T ss_dssp             TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred             hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence            366778888888877666665 58899999998  4    55652     2233356788899999976 6666555555


Q ss_pred             cC-CCCCCeEeccCcccccccChhh-hcCCCCCEEECCCCCCCcc
Q 007711           70 GI-NHSLTILLLDNNDFVGSLSPEI-YKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        70 ~~-~~~L~~l~l~~N~~~g~ip~~~-~~~~~l~~l~l~~n~l~g~  112 (592)
                      .. +++|+.|+|++|.+++..+..+ ..+++|+.|++++|.+++.
T Consensus       452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~  496 (594)
T 2p1m_B          452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK  496 (594)
T ss_dssp             HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred             HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence            54 7889999999999887766665 6688999999999988644

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.65  E-value=1.2e-05  Score=87.84  Aligned_cols=86  Identities=17%  Similarity=0.103  Sum_probs=36.6

Q ss_pred             CCCCCCEEEeeCCccccCCCcccc-CCCCCCeeeccCC-ccccc-CCccccCCCCCCeEeccCcccccccChhhh----c
Q 007711           23 SLTHIKSIILRNNSFSGIIPEGFG-ELEELEVLDFGHN-NFSGP-LPNDLGINHSLTILLLDNNDFVGSLSPEIY----K   95 (592)
Q Consensus        23 ~l~~L~~l~l~~n~l~g~iP~~~~-~l~~L~~l~l~~N-~l~g~-iP~~~~~~~~L~~l~l~~N~~~g~ip~~~~----~   95 (592)
                      .+++|+.|+|++|.+++..+..+. .+++|+.|+|++| .++.. ++..+..+++|+.|+|++|.+++..+..+.    .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            344455555555444444444443 3444555555444 22221 222223444445555544444433322222    3


Q ss_pred             CCCCCEEECCCCC
Q 007711           96 LQVLSESQVDEGQ  108 (592)
Q Consensus        96 ~~~l~~l~l~~n~  108 (592)
                      +++|+.|++++|.
T Consensus       183 ~~~L~~L~l~~~~  195 (594)
T 2p1m_B          183 YTSLVSLNISCLA  195 (594)
T ss_dssp             CCCCCEEECTTCC
T ss_pred             CCcCcEEEecccC
Confidence            3344444444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.62  E-value=1.2e-05  Score=73.71  Aligned_cols=97  Identities=19%  Similarity=0.189  Sum_probs=76.7

Q ss_pred             cCchhhcCCCCCCEEEeeCC-ccccC----CCccccCCCCCCeeeccCCccccc----CCccccCCCCCCeEeccCcccc
Q 007711           16 TLAPEIQSLTHIKSIILRNN-SFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFV   86 (592)
Q Consensus        16 ~~p~~~~~l~~L~~l~l~~n-~l~g~----iP~~~~~l~~L~~l~l~~N~l~g~----iP~~~~~~~~L~~l~l~~N~~~   86 (592)
                      .+...+...+.|+.|+|++| .+...    +...+...++|+.|+|++|++...    +...+...++|+.|+|++|.+.
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            34456778899999999999 88743    455667788999999999998642    3344556688999999999998


Q ss_pred             cc----cChhhhcCCCCCEEEC--CCCCCCcc
Q 007711           87 GS----LSPEIYKLQVLSESQV--DEGQLSSA  112 (592)
Q Consensus        87 g~----ip~~~~~~~~l~~l~l--~~n~l~g~  112 (592)
                      ..    +...+...++|++|+|  +.|.++..
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence            64    5566777889999999  88999753

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.59  E-value=0.0002  Score=74.12  Aligned_cols=78  Identities=13%  Similarity=0.117  Sum_probs=46.5

Q ss_pred             cccCcCCCeEEEEEEeC-CCcEEEEEEeeeccc---CCCchhHHHHHHHHHHHHhcCCC--Cc-eeeeeEEEecCCCcce
Q 007711          304 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASA---KDWPKNLEVQFRKKIDTLSKVNH--KN-FVNLIGFCEEEEPFTR  376 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~---~~~~~~~~~~f~~e~~~l~~l~H--~n-iv~l~g~~~~~~~~~~  376 (592)
                      +.+|.|.++.||++... ++..++||.......   ..+. .....+..|++++..+.+  +. +.+++.+.  .+  ..
T Consensus        36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~-~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d--~~--~~  110 (397)
T 2olc_A           36 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWP-LTIDRARIESSALIRQGEHVPHLVPRVFYSD--TE--MA  110 (397)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCC-------CC-CCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE--TT--TT
T ss_pred             EECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCc-CcHHHHHHHHHHHHHhhhhCCCCcCeEEEEc--CC--cc
Confidence            56999999999999754 467888887543211   0000 112346678888877632  33 44555543  22  34


Q ss_pred             EEEEeeCCCC
Q 007711          377 MMVFEYAPNG  386 (592)
Q Consensus       377 ~lv~Ey~~~g  386 (592)
                      ++||||+++.
T Consensus       111 ~lvmE~l~g~  120 (397)
T 2olc_A          111 VTVMEDLSHL  120 (397)
T ss_dssp             EEEECCCTTS
T ss_pred             EEEEEeCCCc
Confidence            7999999763

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.54  E-value=0.00018  Score=70.86  Aligned_cols=74  Identities=18%  Similarity=0.261  Sum_probs=51.7

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCC---ceeeeeEEEecCCCcceEEEE
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK---NFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~---niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ..+|.|..+.||+.++.+|+.+.+|+.......     ....|..|++.|+.+.-.   -+.+.+++.  .    .++||
T Consensus        21 ~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~-----~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~--~----~~lv~   89 (288)
T 3f7w_A           21 AERGHSHRWHLYRVELADGTPLFVKALPDDAPA-----LDGLFRAEALGLDWLGRSFGSPVPQVAGWD--D----RTLAM   89 (288)
T ss_dssp             EEEEEETTEEEEEEEETTSCEEEEEECCTTCCC-----CTTHHHHHHHHHHHHTCSTTCCSCCEEEEE--T----TEEEE
T ss_pred             EecCCCCCeEEEEEEECCCCEEEEEEeCCCCcc-----hhhHHHHHHHHHHHHHhhCCCCcceEEecc--C----ceEEE
Confidence            568999999999999999999999865432211     123578899888877422   244555542  2    27999


Q ss_pred             eeCCCCCc
Q 007711          381 EYAPNGTL  388 (592)
Q Consensus       381 Ey~~~gsL  388 (592)
                      ||++.+..
T Consensus        90 e~l~~~~~   97 (288)
T 3f7w_A           90 EWVDERPP   97 (288)
T ss_dssp             ECCCCCCC
T ss_pred             EeecccCC
Confidence            99987654

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.48  E-value=0.00063  Score=68.47  Aligned_cols=31  Identities=19%  Similarity=0.235  Sum_probs=27.3

Q ss_pred             CCCeEeeCcCCCCeEEcCCCceEEecCCcch
Q 007711          423 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  453 (592)
Q Consensus       423 ~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~  453 (592)
                      .+.++|+|+++.|||++.+..+.|.||+.+.
T Consensus       221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             SCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             cCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            3459999999999999888899999999764

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.34  E-value=0.0025  Score=63.30  Aligned_cols=135  Identities=14%  Similarity=0.191  Sum_probs=88.4

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC---CCceeeeeEEEecCCCcceEEEE
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN---HKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~---H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.|+.|....+|+... ++..+++|.....        ....|..|.+.|+.+.   ...+.+.++++...+  ..++||
T Consensus        42 ~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~--------~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g--~~~lvm  110 (312)
T 3jr1_A           42 EKLYSGEMNEIWLIND-EVQTVFVKINERS--------YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQG--HSFLLL  110 (312)
T ss_dssp             EEECCSSSSEEEEEES-SSCEEEEEEEEGG--------GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSS--EEEEEE
T ss_pred             EEeCCccceeeeEEEE-CCCeEEEEeCCcc--------cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCC--ceEEEE
Confidence            4689999999999876 4567778765421        2456888988888773   356788888887655  579999


Q ss_pred             eeCCCCCchh-----------hccccCC-C-------------------CCCHHHHH---HHHH----------------
Q 007711          381 EYAPNGTLFE-----------HIHIKES-E-------------------HLDWGMRL---RIAM----------------  410 (592)
Q Consensus       381 Ey~~~gsL~~-----------~l~~~~~-~-------------------~l~~~~~~---~ia~----------------  410 (592)
                      ||+++..+..           .+|.... .                   .-+|....   ++..                
T Consensus       111 e~l~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~  190 (312)
T 3jr1_A          111 EALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNID  190 (312)
T ss_dssp             ECCCCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHH
T ss_pred             EeccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence            9999876521           1221111 0                   12464322   1111                


Q ss_pred             HHH-HHHHHh--hcCCCCeEeeCcCCCCeEEcCCCceEEecCC
Q 007711          411 GMA-YCLEHM--HQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS  450 (592)
Q Consensus       411 ~ia-~gl~yL--H~~~~~ivH~dLk~~NiLl~~~~~~ki~DfG  450 (592)
                      .+. +....|  |...|.++|+|+.+.|++++.++ +.|.||.
T Consensus       191 ~l~~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          191 LIVQIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             HHHHHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             HHHHHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence            111 122334  23356799999999999999887 8899984

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.15  E-value=0.0005  Score=69.04  Aligned_cols=83  Identities=12%  Similarity=0.135  Sum_probs=48.4

Q ss_pred             CCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCc-cccCCCCCCeEeccCcccccccCh-hhhcCCCCC-
Q 007711           24 LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTILLLDNNDFVGSLSP-EIYKLQVLS-  100 (592)
Q Consensus        24 l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~-~~~~~~~L~~l~l~~N~~~g~ip~-~~~~~~~l~-  100 (592)
                      +.+++.+.+.++-.......-...+++|+.++|++|+++ .||. .|..|.+|+.++|.+| ++ .|+. .|.+|.+|+ 
T Consensus       201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~  277 (329)
T 3sb4_A          201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAG  277 (329)
T ss_dssp             GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCE
T ss_pred             ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccE
Confidence            455666666554222111111113677777777777776 5554 4666777777777776 44 3443 566777777 


Q ss_pred             EEECCCCCCC
Q 007711          101 ESQVDEGQLS  110 (592)
Q Consensus       101 ~l~l~~n~l~  110 (592)
                      .+++.+ +++
T Consensus       278 ~l~l~~-~l~  286 (329)
T 3sb4_A          278 TLELPA-SVT  286 (329)
T ss_dssp             EEEECT-TCC
T ss_pred             EEEEcc-cce
Confidence            777766 443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.06  E-value=0.00034  Score=71.18  Aligned_cols=95  Identities=13%  Similarity=0.162  Sum_probs=65.8

Q ss_pred             cCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCcccc--CCCCCCeEeccC--cccccc--c
Q 007711           16 TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG--INHSLTILLLDN--NDFVGS--L   89 (592)
Q Consensus        16 ~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~--~~~~L~~l~l~~--N~~~g~--i   89 (592)
                      .+++.+..+++|+.|.|++|.-. .+|. + .+++|+.|+|..+.++...-..+.  .+++|+.|+|+.  |...|.  +
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence            46677889999999999988311 3444 3 378999999998887654434443  689999999863  332222  1


Q ss_pred             ---Chhh--hcCCCCCEEECCCCCCCccc
Q 007711           90 ---SPEI--YKLQVLSESQVDEGQLSSAA  113 (592)
Q Consensus        90 ---p~~~--~~~~~l~~l~l~~n~l~g~~  113 (592)
                         -..+  ..+++|+.|+|.+|+++...
T Consensus       240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~  268 (362)
T 2ra8_A          240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVV  268 (362)
T ss_dssp             GGTGGGSCTTTCTTCCEEEEESCTTHHHH
T ss_pred             HHHHHHHhcCCCCCcCEEeCCCCCCchHH
Confidence               1112  34789999999999987543

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.90  E-value=0.0022  Score=63.41  Aligned_cols=30  Identities=7%  Similarity=-0.100  Sum_probs=24.8

Q ss_pred             CCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          424 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       424 ~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      +.++|+|+.+.||+ .+++.+.+.||..+..
T Consensus       173 ~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          173 LAACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             CEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             ceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            35899999999999 5566789999987653

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=96.69  E-value=0.0051  Score=61.65  Aligned_cols=31  Identities=6%  Similarity=-0.022  Sum_probs=26.8

Q ss_pred             CCeEeeCcCCCCeEEcCC----CceEEecCCcchh
Q 007711          424 PPIAHNYLNSSAVHLTED----YAAKLSDLSFWNE  454 (592)
Q Consensus       424 ~~ivH~dLk~~NiLl~~~----~~~ki~DfGla~~  454 (592)
                      +.++|||+.+.|||++.+    ..+.|.||+.+..
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            459999999999999875    6789999998764

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=96.42  E-value=0.01  Score=61.60  Aligned_cols=31  Identities=23%  Similarity=0.248  Sum_probs=26.8

Q ss_pred             CCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          424 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       424 ~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      +.++|+|+++.|||++++. ++|.||+.+..-
T Consensus       232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G  262 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYG  262 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred             CeEEecCCCCCcEEEeCCC-CEEEeCcccccC
Confidence            4599999999999999876 999999887643

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=96.33  E-value=0.0096  Score=62.00  Aligned_cols=72  Identities=14%  Similarity=0.169  Sum_probs=46.5

Q ss_pred             cccCcCCCeEEEEEEeCC--------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCce-eeeeEEEecCCCc
Q 007711          304 NVIGSSPIGTVYKGTLSN--------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF-VNLIGFCEEEEPF  374 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~--------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~ni-v~l~g~~~~~~~~  374 (592)
                      +.|+.|....||+....+        +..+.+|+....   .    ....+..|..++..+...++ .++++.+.  +  
T Consensus        79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~---~----~~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--  147 (429)
T 1nw1_A           79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP---E----TESHLVAESVIFTLLSERHLGPKLYGIFS--G--  147 (429)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC---C----CHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--
T ss_pred             EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC---C----cHHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--
Confidence            457888889999998753        467777766221   1    11345578888877743333 56776553  2  


Q ss_pred             ceEEEEeeCCCCCc
Q 007711          375 TRMMVFEYAPNGTL  388 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL  388 (592)
                        .+|+||+++-.|
T Consensus       148 --g~v~e~l~G~~l  159 (429)
T 1nw1_A          148 --GRLEEYIPSRPL  159 (429)
T ss_dssp             --EEEECCCCEEEC
T ss_pred             --CEEEEEeCCccc
Confidence              389999986444

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=96.19  E-value=0.03  Score=55.56  Aligned_cols=141  Identities=11%  Similarity=0.067  Sum_probs=75.0

Q ss_pred             cccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCc--eeeeeEEE------ecCCCcc
Q 007711          304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN--FVNLIGFC------EEEEPFT  375 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~n--iv~l~g~~------~~~~~~~  375 (592)
                      +.|+.|....+|+....+| .+++|.......       ..++..|+.++..+....  +.+++...      ...+  .
T Consensus        28 ~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~~-------~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g--~   97 (322)
T 2ppq_A           28 KGIAEGVENSNFLLHTTKD-PLILTLYEKRVE-------KNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSG--R   97 (322)
T ss_dssp             EEECC---EEEEEEEESSC-CEEEEEECC----------CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETT--E
T ss_pred             eccCCCcccceEEEEeCCc-cEEEEEeCCCCC-------HHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECC--E
Confidence            3467788889999987666 566776643211       123455666666553212  23333211      1112  4


Q ss_pred             eEEEEeeCCCCCchh--------------hcccc----CCC---C---CCHHHHHH------------HHHHHHHHHHHh
Q 007711          376 RMMVFEYAPNGTLFE--------------HIHIK----ESE---H---LDWGMRLR------------IAMGMAYCLEHM  419 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~--------------~l~~~----~~~---~---l~~~~~~~------------ia~~ia~gl~yL  419 (592)
                      .+++++|+++..+..              .+|..    ...   .   ..|.....            +...+.+.++++
T Consensus        98 ~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l  177 (322)
T 2ppq_A           98 PAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYL  177 (322)
T ss_dssp             EEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            579999998865421              11110    000   0   12433111            111234455555


Q ss_pred             hc-----CCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          420 HQ-----LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       420 H~-----~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      +.     ..+.++|+|+.+.|||++++..+.|.||+.+..
T Consensus       178 ~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          178 AAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             HHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence            42     123599999999999999876668999987653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.19  E-value=0.0096  Score=61.39  Aligned_cols=79  Identities=14%  Similarity=0.089  Sum_probs=37.1

Q ss_pred             CCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccc----cCC-ccccCCCCCCeEeccCcccccccC-hhhhcCCC
Q 007711           25 THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG----PLP-NDLGINHSLTILLLDNNDFVGSLS-PEIYKLQV   98 (592)
Q Consensus        25 ~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g----~iP-~~~~~~~~L~~l~l~~N~~~g~ip-~~~~~~~~   98 (592)
                      .+|+.+.|. |++.-.-+..|.+|++|+.+++.+|.+..    .|+ ..|..|++|+.+.|.+ .++ .|+ ..|.+|.+
T Consensus       248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~  324 (401)
T 4fdw_A          248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRK  324 (401)
T ss_dssp             CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCS
T ss_pred             CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCC
Confidence            455555553 33332223445555555555555554431    122 2344555555555552 233 232 23445555


Q ss_pred             CCEEECCC
Q 007711           99 LSESQVDE  106 (592)
Q Consensus        99 l~~l~l~~  106 (592)
                      |+.+++..
T Consensus       325 L~~l~lp~  332 (401)
T 4fdw_A          325 VTQLTIPA  332 (401)
T ss_dssp             CCEEEECT
T ss_pred             ccEEEECc
Confidence            55555543

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=96.12  E-value=0.024  Score=57.85  Aligned_cols=139  Identities=12%  Similarity=0.093  Sum_probs=78.1

Q ss_pred             cccCcCCCeEEEEEEeCC--------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCc
Q 007711          304 NVIGSSPIGTVYKGTLSN--------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPF  374 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~--------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~  374 (592)
                      +.+..|-...+|+....+        +..+.+|+.-.. .     .....+.+|..+++.+. +.-..++++++..    
T Consensus        56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~-----~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----  125 (379)
T 3feg_A           56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-L-----QGVDSLVLESVMFAILAERSLGPQLYGVFPE----  125 (379)
T ss_dssp             EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----
T ss_pred             EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-c-----chHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----
Confidence            457678888899988752        467777764211 1     11345668888887774 2223566666532    


Q ss_pred             ceEEEEeeCCCCCchhh-----------------cccc---CCCCCC--HHHHHHHHHHHH-------------------
Q 007711          375 TRMMVFEYAPNGTLFEH-----------------IHIK---ESEHLD--WGMRLRIAMGMA-------------------  413 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~-----------------l~~~---~~~~l~--~~~~~~ia~~ia-------------------  413 (592)
                        .+|+||+++..|...                 +|..   -.....  |.+..++..++.                   
T Consensus       126 --g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~  203 (379)
T 3feg_A          126 --GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLK  203 (379)
T ss_dssp             --EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHH
T ss_pred             --ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHH
Confidence              289999987655311                 1111   011222  344444433221                   


Q ss_pred             HHHHH----hhc--CCCCeEeeCcCCCCeEEcCC----CceEEecCCcchh
Q 007711          414 YCLEH----MHQ--LNPPIAHNYLNSSAVHLTED----YAAKLSDLSFWNE  454 (592)
Q Consensus       414 ~gl~y----LH~--~~~~ivH~dLk~~NiLl~~~----~~~ki~DfGla~~  454 (592)
                      ..+..    |..  ....++|+|+.+.||+++.+    ..+.+.||..+..
T Consensus       204 ~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~  254 (379)
T 3feg_A          204 DEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY  254 (379)
T ss_dssp             HHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred             HHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence            12233    322  22359999999999999877    6899999998754

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=96.12  E-value=0.033  Score=58.34  Aligned_cols=73  Identities=10%  Similarity=0.077  Sum_probs=45.1

Q ss_pred             cccCcCCCeEEEEEEeCC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCce-eeeeEEEecCCCcceEEEEe
Q 007711          304 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF-VNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~ni-v~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.|+.|-...+|+....+ +..+.+|+..... ...     .+...|..++..+...++ .++++++.  +    .+|+|
T Consensus       114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~-~~~-----idR~~E~~vl~~L~~~gl~P~ll~~~~--~----G~v~e  181 (458)
T 2qg7_A          114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKT-DEI-----INREREKKISCILYNKNIAKKIYVFFT--N----GRIEE  181 (458)
T ss_dssp             EEECC--CEEEEEEEETTTTEEEEEEEECC-C-CSC-----SCHHHHHHHHHHHTTSSSBCCEEEEET--T----EEEEE
T ss_pred             EEcCCCeEeEEEEEEECCCCceEEEEECCCCh-hhh-----cCHHHHHHHHHHHHhcCCCCCEEEEeC--C----eEEEE
Confidence            468888889999998865 4677777653221 111     112468888888765444 46777662  2    35999


Q ss_pred             eCCCCCc
Q 007711          382 YAPNGTL  388 (592)
Q Consensus       382 y~~~gsL  388 (592)
                      |+++-.|
T Consensus       182 ~I~G~~l  188 (458)
T 2qg7_A          182 FMDGYAL  188 (458)
T ss_dssp             CCCSEEC
T ss_pred             eeCCccC
Confidence            9987554

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=96.06  E-value=0.018  Score=57.34  Aligned_cols=139  Identities=9%  Similarity=0.028  Sum_probs=75.7

Q ss_pred             ccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCC--ceeeeeEE-----EecCCCcceE
Q 007711          305 VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK--NFVNLIGF-----CEEEEPFTRM  377 (592)
Q Consensus       305 ~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~--niv~l~g~-----~~~~~~~~~~  377 (592)
                      .++ |....||+....+|..+++|.......      ....+..|..++..+...  .+.+++..     ....+  ..+
T Consensus        33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~------~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g--~~~  103 (328)
T 1zyl_A           33 PLN-SYENRVYQFQDEDRRRFVVKFYRPERW------TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQG--FYF  103 (328)
T ss_dssp             EEC-CSSSEEEEECCTTCCCEEEEEECTTTS------CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETT--EEE
T ss_pred             eec-CcccceEEEEcCCCCEEEEEEcCCCCC------CHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECC--EEE
Confidence            355 777899998777777788887642211      123566677777666321  23444433     11112  357


Q ss_pred             EEEeeCCCCCchh--------------hcccc----C---CCCCCHHHH----HHH---------------HHHHHHHHH
Q 007711          378 MVFEYAPNGTLFE--------------HIHIK----E---SEHLDWGMR----LRI---------------AMGMAYCLE  417 (592)
Q Consensus       378 lv~Ey~~~gsL~~--------------~l~~~----~---~~~l~~~~~----~~i---------------a~~ia~gl~  417 (592)
                      +++||+++..+..              .+|..    .   ....++...    ..+               ...+.+.++
T Consensus       104 ~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  183 (328)
T 1zyl_A          104 AVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIA  183 (328)
T ss_dssp             EEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHH
Confidence            8999998754421              01110    0   011232211    001               111112222


Q ss_pred             Hhh----c-CCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          418 HMH----Q-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       418 yLH----~-~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      .+.    . ..+.++|+|+++.|||++ + .+.|.||+.+..
T Consensus       184 ~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          184 AVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             HHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             HHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            321    1 233589999999999999 4 889999987653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.95  E-value=0.013  Score=49.94  Aligned_cols=58  Identities=17%  Similarity=0.288  Sum_probs=39.0

Q ss_pred             eeeccCCccc-ccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           53 VLDFGHNNFS-GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        53 ~l~l~~N~l~-g~iP~~~~~~~~L~~l~l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      .++-++++|+ ..||..+.  .+|+.|+|++|+|+..-+..|..+++|+.|+|++|-+...
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            5666666665 45665442  3577777777777744444567788888888888877653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.86  E-value=0.012  Score=50.07  Aligned_cols=56  Identities=20%  Similarity=0.232  Sum_probs=41.5

Q ss_pred             CEEEeeCCccc-cCCCccccCCCCCCeeeccCCcccccCCc-cccCCCCCCeEeccCcccc
Q 007711           28 KSIILRNNSFS-GIIPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTILLLDNNDFV   86 (592)
Q Consensus        28 ~~l~l~~n~l~-g~iP~~~~~l~~L~~l~l~~N~l~g~iP~-~~~~~~~L~~l~l~~N~~~   86 (592)
                      ..++.+++.|+ ..+|..+  ..+|+.|+|++|+|+ .||. .|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            36777777776 4567543  246888999999998 5654 4577888999999999875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.85  E-value=0.0029  Score=56.77  Aligned_cols=92  Identities=10%  Similarity=0.004  Sum_probs=65.2

Q ss_pred             CchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCc-ccccCCccccCC----CCCCeEeccCc-ccccccC
Q 007711           17 LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN-FSGPLPNDLGIN----HSLTILLLDNN-DFVGSLS   90 (592)
Q Consensus        17 ~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~-l~g~iP~~~~~~----~~L~~l~l~~N-~~~g~ip   90 (592)
                      +|.....--+|+.|+|+++.++..==..+..+++|+.|+|+++. ++..-=..+..+    ++|+.|+|+++ ++|..=-
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            45433233469999999998875433456789999999999984 654322334443    47999999986 4775444


Q ss_pred             hhhhcCCCCCEEECCCCC
Q 007711           91 PEIYKLQVLSESQVDEGQ  108 (592)
Q Consensus        91 ~~~~~~~~l~~l~l~~n~  108 (592)
                      ..+.++++|+.|+++++.
T Consensus       133 ~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHGGGCTTCCEEEEESCT
T ss_pred             HHHhcCCCCCEEECCCCC
Confidence            567889999999998764

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=95.66  E-value=0.022  Score=57.88  Aligned_cols=29  Identities=21%  Similarity=0.259  Sum_probs=24.2

Q ss_pred             CeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          425 PIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       425 ~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      .++|+|+.+.|||++++. +.+.||..+..
T Consensus       213 ~l~HgDl~~~Nil~~~~~-~~lID~e~a~~  241 (369)
T 3c5i_A          213 VFCHNDLQENNIINTNKC-LRLIDFEYSGF  241 (369)
T ss_dssp             EEECSCCCGGGEEECC-C-EEECCCTTCEE
T ss_pred             EEEeCCCCcccEEecCCc-EEEEEecCCCC
Confidence            599999999999998655 89999987653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.47  E-value=0.0041  Score=56.91  Aligned_cols=64  Identities=19%  Similarity=0.212  Sum_probs=27.5

Q ss_pred             CCCCCCEEEeeCC-ccccC----CCccccCCCCCCeeeccCCccccc----CCccccCCCCCCeEeccCcccc
Q 007711           23 SLTHIKSIILRNN-SFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFV   86 (592)
Q Consensus        23 ~l~~L~~l~l~~n-~l~g~----iP~~~~~l~~L~~l~l~~N~l~g~----iP~~~~~~~~L~~l~l~~N~~~   86 (592)
                      +-+.|+.|+|++| .|...    |-..+..-+.|+.|+|++|++...    |-..+..-+.|+.|+|++|.+.
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3344555555543 44311    222233334455555555555421    1111223344555555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.46  E-value=0.032  Score=57.42  Aligned_cols=78  Identities=14%  Similarity=0.234  Sum_probs=43.7

Q ss_pred             CCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCcccccccC-hhhhcCCCCCEEEC
Q 007711           26 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLS-PEIYKLQVLSESQV  104 (592)
Q Consensus        26 ~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~~g~ip-~~~~~~~~l~~l~l  104 (592)
                      +|+.+.|.+ ++.-.-+..|.+|.+|+.++|++|+++ .||.....+.+|+.+.|.+| ++ .|+ ..|.+|.+|+.+++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEec
Confidence            456665554 444333445666666666666666666 55555444566666666543 33 333 34556666666666


Q ss_pred             CCC
Q 007711          105 DEG  107 (592)
Q Consensus       105 ~~n  107 (592)
                      ..|
T Consensus       234 ~~~  236 (401)
T 4fdw_A          234 PEN  236 (401)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=94.92  E-value=0.006  Score=54.72  Aligned_cols=83  Identities=13%  Similarity=0.104  Sum_probs=60.3

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCc-cccCCCccccCC----CCCCeeeccCCc-ccccCCccccCCCCC
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNS-FSGIIPEGFGEL----EELEVLDFGHNN-FSGPLPNDLGINHSL   75 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~-l~g~iP~~~~~l----~~L~~l~l~~N~-l~g~iP~~~~~~~~L   75 (592)
                      .|+.|||+++.++..=-..+..|++|+.|+|+++. ++..-=..++.+    ++|+.|+|+++. ++..==..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            58899999998865433457899999999999985 654322234443    479999999974 664322356789999


Q ss_pred             CeEeccCcc
Q 007711           76 TILLLDNND   84 (592)
Q Consensus        76 ~~l~l~~N~   84 (592)
                      +.|+|++..
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999998764

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=94.63  E-value=0.21  Score=49.94  Aligned_cols=31  Identities=10%  Similarity=0.009  Sum_probs=27.3

Q ss_pred             CCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          424 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       424 ~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..++|+|+.+.||++++++.+.|.||+.+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            3599999999999999888899999987654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.93  E-value=0.039  Score=50.37  Aligned_cols=106  Identities=17%  Similarity=0.153  Sum_probs=50.0

Q ss_pred             eeecccCCc-cccc----cCchhhcCCCCCCEEEeeCCccccC----CCccccCCCCCCeeeccCCccccc----CCccc
Q 007711            3 VMCRNLKDL-CLEG----TLAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDL   69 (592)
Q Consensus         3 ~~~l~l~~~-~l~g----~~p~~~~~l~~L~~l~l~~n~l~g~----iP~~~~~l~~L~~l~l~~N~l~g~----iP~~~   69 (592)
                      |+.|+|++| .+..    .|...+..-+.|+.|+|++|.|...    |-..+..-+.|+.|+|++|+++..    |-..+
T Consensus        43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL  122 (197)
T 1pgv_A           43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST  122 (197)
T ss_dssp             CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred             ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH
Confidence            455666653 4431    1334455555666666666666522    122222234566666666666532    11223


Q ss_pred             cCCCCCCeEeccCc---cccc----ccChhhhcCCCCCEEECCCCC
Q 007711           70 GINHSLTILLLDNN---DFVG----SLSPEIYKLQVLSESQVDEGQ  108 (592)
Q Consensus        70 ~~~~~L~~l~l~~N---~~~g----~ip~~~~~~~~l~~l~l~~n~  108 (592)
                      ..-+.|+.|+|++|   .+..    .|-..+..-++|..|+++.|.
T Consensus       123 ~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          123 LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            33445666666543   2221    122233344556666665544

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=90.89  E-value=0.93  Score=46.66  Aligned_cols=29  Identities=17%  Similarity=0.228  Sum_probs=25.8

Q ss_pred             CeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          425 PIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       425 ~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      .++|+|+.+.||+ +++..+.+.||..+..
T Consensus       263 ~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~  291 (424)
T 3mes_A          263 VFAHNDLQENNLL-QTQNNIRMIDYEYSAI  291 (424)
T ss_dssp             EEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             eEECCCCCcccee-cCCCcEEEEecccCCc
Confidence            5899999999999 8888999999998754

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=90.75  E-value=1  Score=41.51  Aligned_cols=97  Identities=12%  Similarity=0.187  Sum_probs=60.6

Q ss_pred             CchhhccccCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhhhhccc
Q 007711          387 TLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK  465 (592)
Q Consensus       387 sL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yL-H~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~~~~~~  465 (592)
                      +|.+.|.. .+.+++..+.-.++.|.+.+|.-+ +...+  ..+=.-+..|++..+|.+...+ ..+..   ......++
T Consensus        34 SL~eIL~~-~~~PlsEEqaWALc~Qc~~~L~~~~~~~~~--~~~i~~~~~i~l~~dG~V~f~~-~~s~~---~~~~~~~p  106 (229)
T 2yle_A           34 SLEEILRL-YNQPINEEQAWAVCYQCCGSLRAAARRRQP--RHRVRSAAQIRVWRDGAVTLAP-AADDA---GEPPPVAG  106 (229)
T ss_dssp             EHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHTTCC--CCCCCSGGGEEEETTSCEEECC-C---------------
T ss_pred             cHHHHHHH-cCCCcCHHHHHHHHHHHHHHHHhhhhcccC--CceecCCcceEEecCCceeccc-ccccc---cccCCCCh
Confidence            67788764 457899999999999999988776 32221  1222356899999999988775 22110   00111112


Q ss_pred             ccCCCCCCCCCCcchhhHHHHHHHHh
Q 007711          466 KLSSAPSASLESNVYNFGVLLFEMVT  491 (592)
Q Consensus       466 ~~~~~~~~s~ksDVwSfGvvl~El~t  491 (592)
                      +.. ....+.+.=|||+|+++|.-+-
T Consensus       107 e~~-~~~~te~~~IysLG~tLY~ALD  131 (229)
T 2yle_A          107 KLG-YSQCMETEVIESLGIIIYKALD  131 (229)
T ss_dssp             CCS-SSSSCHHHHHHHHHHHHHHHHT
T ss_pred             hhc-cccchHHHHHHHHHHHHHHHhh
Confidence            211 1234677889999999999886

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=90.41  E-value=0.87  Score=46.56  Aligned_cols=29  Identities=21%  Similarity=0.268  Sum_probs=24.7

Q ss_pred             eEeeCcCCCCeEE------cCCCceEEecCCcchh
Q 007711          426 IAHNYLNSSAVHL------TEDYAAKLSDLSFWNE  454 (592)
Q Consensus       426 ivH~dLk~~NiLl------~~~~~~ki~DfGla~~  454 (592)
                      ++|+|+.+.|||+      +++..+++.||.+|..
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~  280 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY  280 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence            6799999999999      4566799999998764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=88.58  E-value=0.66  Score=47.21  Aligned_cols=86  Identities=7%  Similarity=0.128  Sum_probs=63.8

Q ss_pred             hhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCC-ccccCCCCCCeEeccCcccccccCh-hhhcC
Q 007711           19 PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLLDNNDFVGSLSP-EIYKL   96 (592)
Q Consensus        19 ~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP-~~~~~~~~L~~l~l~~N~~~g~ip~-~~~~~   96 (592)
                      ..+.++++|+.+.+. +.+.-.-...|.+|.+|+.++|..| ++ .|. ..|..|.+|+.+.+.++ ++ .|.. .|.+|
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C  356 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNC  356 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTC
T ss_pred             cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCC
Confidence            346788999999986 4455333456788999999999865 44 454 46778999999999765 44 5654 67789


Q ss_pred             CCCCEEECCCCCC
Q 007711           97 QVLSESQVDEGQL  109 (592)
Q Consensus        97 ~~l~~l~l~~n~l  109 (592)
                      .+|+.+++.+|..
T Consensus       357 ~~L~~i~~~~~~~  369 (394)
T 4gt6_A          357 TALNNIEYSGSRS  369 (394)
T ss_dssp             TTCCEEEESSCHH
T ss_pred             CCCCEEEECCcee
Confidence            9999999987653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=88.38  E-value=1  Score=45.45  Aligned_cols=85  Identities=15%  Similarity=0.133  Sum_probs=58.6

Q ss_pred             hhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCC-ccccCCCCCCeEeccCcccccccChhhhcCCC
Q 007711           20 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLLDNNDFVGSLSPEIYKLQV   98 (592)
Q Consensus        20 ~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP-~~~~~~~~L~~l~l~~N~~~g~ip~~~~~~~~   98 (592)
                      .+..+..|+.+.+..+ +.-.-...+.++.+|+.+.+..+ +. .|+ ..|..+.+|+.+.+.+|.++-.-...|.+|.+
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCC
Confidence            4667888888888765 44333455677888888888654 43 344 35677888888888887776333346778888


Q ss_pred             CCEEECCCC
Q 007711           99 LSESQVDEG  107 (592)
Q Consensus        99 l~~l~l~~n  107 (592)
                      |+.+.+..+
T Consensus       312 L~~i~lp~~  320 (379)
T 4h09_A          312 LSSVTLPTA  320 (379)
T ss_dssp             CCEEECCTT
T ss_pred             CCEEEcCcc
Confidence            888888654

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=87.22  E-value=0.18  Score=33.30  Aligned_cols=28  Identities=32%  Similarity=0.453  Sum_probs=13.5

Q ss_pred             EEEehHHHHHHHH--HHHHHHhhheecccc
Q 007711          239 AILGGVIGGAILL--VATVGIYLCRCNKVS  266 (592)
Q Consensus       239 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~  266 (592)
                      +|.++++++++++  +++..++++|+|+.+
T Consensus        11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~   40 (44)
T 2l2t_A           11 LIAAGVIGGLFILVIVGLTFAVYVRRKSIK   40 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             eEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence            4566666655544  233334444444433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=86.05  E-value=0.99  Score=45.85  Aligned_cols=81  Identities=11%  Similarity=0.030  Sum_probs=49.0

Q ss_pred             hhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCC-ccccCCCCCCeEeccCcccccccC-hhhhcCC
Q 007711           20 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLLDNNDFVGSLS-PEIYKLQ   97 (592)
Q Consensus        20 ~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP-~~~~~~~~L~~l~l~~N~~~g~ip-~~~~~~~   97 (592)
                      .+..+..|+.+.+..+.+.   ...+..+.+|+.+.+.++ +. .|+ ..|..+.+|+.++|.++ ++ .|. ..|.+|.
T Consensus       271 ~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~  343 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCT  343 (394)
T ss_dssp             TTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCT
T ss_pred             ccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCC
Confidence            4566677777776665432   234566777777777654 33 344 34566777777777544 43 343 3566777


Q ss_pred             CCCEEECCCC
Q 007711           98 VLSESQVDEG  107 (592)
Q Consensus        98 ~l~~l~l~~n  107 (592)
                      +|+.+++..|
T Consensus       344 ~L~~i~lp~~  353 (394)
T 4fs7_A          344 SLSNINFPLS  353 (394)
T ss_dssp             TCCEECCCTT
T ss_pred             CCCEEEECcc
Confidence            7777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=85.69  E-value=1.7  Score=44.10  Aligned_cols=83  Identities=14%  Similarity=0.191  Sum_probs=63.1

Q ss_pred             hhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCc-cccCCCCCCeEeccCcccccccCh-hhhcCC
Q 007711           20 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTILLLDNNDFVGSLSP-EIYKLQ   97 (592)
Q Consensus        20 ~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~-~~~~~~~L~~l~l~~N~~~g~ip~-~~~~~~   97 (592)
                      .|..+..|+.+.+.++-.+ .-...|.++.+|+.+.+. +++. .|+. .|..|.+|+.+.|..| ++ .|.. .|.+|.
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~  334 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCE  334 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCT
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCC
Confidence            5778899999999776543 334567889999999996 4454 5664 5678999999999865 44 4544 678899


Q ss_pred             CCCEEECCCC
Q 007711           98 VLSESQVDEG  107 (592)
Q Consensus        98 ~l~~l~l~~n  107 (592)
                      +|+.+.+..+
T Consensus       335 ~L~~i~ip~s  344 (394)
T 4gt6_A          335 QLERIAIPSS  344 (394)
T ss_dssp             TCCEEEECTT
T ss_pred             CCCEEEECcc
Confidence            9999999754

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=85.11  E-value=0.11  Score=54.41  Aligned_cols=63  Identities=6%  Similarity=0.059  Sum_probs=18.0

Q ss_pred             hhcccCcCCCeEEEEEEeCC-CcEEEE------EEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEec
Q 007711          302 FSNVIGSSPIGTVYKGTLSN-GVEIAV------ASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE  370 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~-~~~vav------k~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~  370 (592)
                      +.+.||   ||.||+|.+.. ..+|||      |.....   .........|.+|..++..++|+|+++.++|...
T Consensus       146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~---~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQD---GVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             STTTSS---BCCC---------CCBGGGC--------------------------------------CBCCCEEEE
T ss_pred             ccccCC---chhhhcccccccCCchhhhhccCccccccc---cccccccccccccccccccccccccCCCcceEEe
Confidence            345676   99999999864 356777      443221   1112234568889999999999999999988754

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=84.29  E-value=0.37  Score=31.85  Aligned_cols=27  Identities=30%  Similarity=0.379  Sum_probs=12.6

Q ss_pred             EEEehHHHHHHHH--HHHHHHhhheeccc
Q 007711          239 AILGGVIGGAILL--VATVGIYLCRCNKV  265 (592)
Q Consensus       239 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~  265 (592)
                      +|.++++++++++  ++++.++++|+|+.
T Consensus        12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~   40 (44)
T 2ks1_B           12 SIATGMVGALLLLLVVALGIGLFMRRRHI   40 (44)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             eEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence            3556666655544  22333444444433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=83.49  E-value=1.2  Score=45.15  Aligned_cols=83  Identities=11%  Similarity=0.078  Sum_probs=63.7

Q ss_pred             hhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCC-ccccCCCCCCeEeccCcccccccCh-hhhcCC
Q 007711           20 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLLDNNDFVGSLSP-EIYKLQ   97 (592)
Q Consensus        20 ~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP-~~~~~~~~L~~l~l~~N~~~g~ip~-~~~~~~   97 (592)
                      .+..+.+|+.+.+.++ +.-.=...|.+|.+|+.++|.++ ++ .|+ ..|..|.+|+.+.+..| ++ .|.. .|.+|.
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~  366 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCI  366 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCC
Confidence            4678899999999765 55333466889999999999755 55 565 46788999999999877 55 4544 688899


Q ss_pred             CCCEEECCCC
Q 007711           98 VLSESQVDEG  107 (592)
Q Consensus        98 ~l~~l~l~~n  107 (592)
                      +|+.+++..+
T Consensus       367 ~L~~i~lp~~  376 (394)
T 4fs7_A          367 NLKKVELPKR  376 (394)
T ss_dssp             TCCEEEEEGG
T ss_pred             CCCEEEECCC
Confidence            9999998643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=81.39  E-value=3.7  Score=41.13  Aligned_cols=87  Identities=11%  Similarity=0.110  Sum_probs=62.2

Q ss_pred             hhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCC-ccccCCCCCCeEeccCcccccccCh-hhhcCC
Q 007711           20 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLLDNNDFVGSLSP-EIYKLQ   97 (592)
Q Consensus        20 ~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP-~~~~~~~~L~~l~l~~N~~~g~ip~-~~~~~~   97 (592)
                      .+..+..|+.+.+..+ +.-.-...+.++..|+.+.+..+ ++ .|. ..+..+.+|+.+.+..+ +. .|+. .|.+|.
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~  286 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCS  286 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCT
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ce-ecccccccccc
Confidence            4567788888888655 33233456778899999999776 44 344 35677889999998655 33 4544 577899


Q ss_pred             CCCEEECCCCCCCc
Q 007711           98 VLSESQVDEGQLSS  111 (592)
Q Consensus        98 ~l~~l~l~~n~l~g  111 (592)
                      +|+.+.+.++.++.
T Consensus       287 ~L~~i~l~~~~i~~  300 (379)
T 4h09_A          287 NLTKVVMDNSAIET  300 (379)
T ss_dssp             TCCEEEECCTTCCE
T ss_pred             ccccccccccccce
Confidence            99999998887763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	592
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-47
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	7e-43
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-42
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-41
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-40
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-40
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-39
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	4e-39
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-38
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-38
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	7e-38
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-37
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-37
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	4e-37
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-36
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	5e-36
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	6e-36
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	8e-35
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	8e-35
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-34
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	5e-34
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-33
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-33
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	7e-33
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-32
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-32
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	4e-32
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	5e-32
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-32
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-31
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-31
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	7e-31
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	8e-31
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-30
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	4e-30
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-29
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	9e-29
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	6e-28
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-27
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	3e-27
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-26
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-26
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-26
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	4e-26
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	6e-26
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	6e-26
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-25
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	3e-25
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	5e-25
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-24
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-24
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	5e-24
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-23
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	2e-22
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	7e-21
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	1e-20
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-20
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	5e-19
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	9e-18
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-17
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-15
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	8e-14
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	3e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (420), Expect = 1e-47
 Identities = 62/277 (22%), Positives = 116/277 (41%), Gaps = 32/277 (11%)

Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 361
               IGS   GTVYKG     V + + +V+  + +         F+ ++  L K  H N 
Sbjct: 12  VGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQ-----LQAFKNEVGVLRKTRHVNI 66

Query: 362 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ 421
           +  +G+    +     +V ++    +L+ H+HI E+   +    + IA   A  ++++H 
Sbjct: 67  LLFMGYSTAPQLA---IVTQWCEGSSLYHHLHIIET-KFEMIKLIDIARQTAQGMDYLHA 122

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--------------MAATSKKL 467
               I H  L S+ + L ED   K+ D       +                 MA    ++
Sbjct: 123 --KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRM 180

Query: 468 SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 527
                 S +S+VY FG++L+E++TG+LPY   N +  D     +      + ++ P LS 
Sbjct: 181 QDKNPYSFQSDVYAFGIVLYELMTGQLPY--SNINNRDQIIFMVG-----RGYLSPDLSK 233

Query: 528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
                 + +  L+  C++   ++RP    I A +  +
Sbjct: 234 VRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELL 270

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 7e-43
 Identities = 59/274 (21%), Positives = 110/274 (40%), Gaps = 32/274 (11%)

Query: 300 EDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN 357
           ++      IG    G V  G    G ++AV  +   +           F  +   ++++ 
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQ-------AFLAEASVMTQLR 58

Query: 358 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLE 417
           H N V L+G   EE+     +V EY   G+L +++  +    L     L+ ++ +   +E
Sbjct: 59  HSNLVQLLGVIVEEKGG-LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAME 117

Query: 418 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP------ 471
           ++        H  L +  V ++ED  AK+SD     E +  +         +AP      
Sbjct: 118 YLEG--NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREK 175

Query: 472 SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 530
             S +S+V++FG+LL+E+ + GR+PY      L+D       G +              +
Sbjct: 176 KFSTKSDVWSFGILLWEIYSFGRVPY--PRIPLKDVVPRVEKGYKM----------DAPD 223

Query: 531 EQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
                + E++K+C   D   RP+   +   L  I
Sbjct: 224 GCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHI 257

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (383), Expect = 2e-42
 Identities = 53/273 (19%), Positives = 108/273 (39%), Gaps = 32/273 (11%)

Query: 302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 361
               +G+   G V+ G  +   ++AV S+   S           F  + + + ++ H+  
Sbjct: 17  LVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD------AFLAEANLMKQLQHQRL 70

Query: 362 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ 421
           V L     +E  +   ++ EY  NG+L + +       L     L +A  +A  +  + +
Sbjct: 71  VRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS----APSA---- 473
            N    H  L ++ + +++  + K++D      I   E  A           AP A    
Sbjct: 128 RN--YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYG 185

Query: 474 --SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
             +++S+V++FG+LL E+VT                   ++  + +Q           + 
Sbjct: 186 TFTIKSDVWSFGILLTEIVTHGRIPY-----------PGMTNPEVIQNLERGYRMVRPDN 234

Query: 532 QLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
             E L +L++ C +  PE RPT   + ++L + 
Sbjct: 235 CPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (379), Expect = 1e-41
 Identities = 50/297 (16%), Positives = 104/297 (35%), Gaps = 48/297 (16%)

Query: 305 VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 364
            IG    G V++G    G E+AV   S    + W          +I     + H+N +  
Sbjct: 10  SIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSW------FREAEIYQTVMLRHENILGF 62

Query: 365 IGFCEEEEP--FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 422
           I    ++        +V +Y  +G+LF++++      +     +++A+  A  L H+H  
Sbjct: 63  IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHLHME 119

Query: 423 ------NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA-------------------M 457
                  P IAH  L S  + + ++    ++DL                          M
Sbjct: 120 IVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYM 179

Query: 458 AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--------SLEDWAAD 509
           A              +   +++Y  G++ +E+        +              D + +
Sbjct: 180 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE 239

Query: 510 YLSGVQPLQQFVDPTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
            +  V   +Q + P + +     E L  + ++++ C  A+   R T   I   L ++
Sbjct: 240 EMRKVV-CEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 295

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (373), Expect = 1e-40
 Identities = 58/280 (20%), Positives = 109/280 (38%), Gaps = 36/280 (12%)

Query: 302 FSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN 357
           F+ VIG    G VY GTL +     +  AV S++  +          QF  +   +   +
Sbjct: 31  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS----QFLTEGIIMKDFS 86

Query: 358 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLE 417
           H N ++L+G C   E  + ++V  Y  +G L   I  + + +      +   + +A  ++
Sbjct: 87  HPNVLSLLGICLRSE-GSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMK 144

Query: 418 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSA---- 473
            +        H  L +    L E +  K++D     ++   E  +   K  +        
Sbjct: 145 FLAS--KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 202

Query: 474 ---------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT 524
                    + +S+V++FGVLL+E++T   P   D  +  D     L G + L     P 
Sbjct: 203 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-NTFDITVYLLQGRRLL----QPE 257

Query: 525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
                    + L E++  C     E RP+  ++ + +  I
Sbjct: 258 YCP------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 291

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (367), Expect = 2e-40
 Identities = 58/285 (20%), Positives = 117/285 (41%), Gaps = 37/285 (12%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKK 349
           +  SEL      F   IGS   G V+ G   N  ++A+ ++   +        E  F ++
Sbjct: 2   IDPSELT-----FVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS------EEDFIEE 50

Query: 350 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIA 409
            + + K++H   V L G C E+ P    +VFE+  +G L +++   +         L + 
Sbjct: 51  AEVMMKLSHPKLVQLYGVCLEQAPI--CLVFEFMEHGCLSDYLR-TQRGLFAAETLLGMC 107

Query: 410 MGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS 469
           + +   + ++ +    + H  L +    + E+   K+SD      +   +  +++     
Sbjct: 108 LDVCEGMAYLEE--ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFP 165

Query: 470 ----AP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ 519
               +P        S +S+V++FGVL++E+ +       +N S  +   D  +G +    
Sbjct: 166 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIP-YENRSNSEVVEDISTGFRL--- 221

Query: 520 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
              P L+S        + +++  C +  PE RP    +   L EI
Sbjct: 222 -YKPRLAS------THVYQIMNHCWKERPEDRPAFSRLLRQLAEI 259

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (360), Expect = 2e-39
 Identities = 44/275 (16%), Positives = 100/275 (36%), Gaps = 34/275 (12%)

Query: 301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 360
            F   +G+   G V  G      ++A+  +   S        E +F ++   +  ++H+ 
Sbjct: 7   TFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS------EDEFIEEAKVMMNLSHEK 60

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH 420
            V L G C ++ P    ++ EY  NG L  ++             L +   +   +E++ 
Sbjct: 61  LVQLYGVCTKQRPI--FIITEYMANGCLLNYLREMRH-RFQTQQLLEMCKDVCEAMEYLE 117

Query: 421 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLE---- 476
                  H  L +    + +    K+SD      +   E  ++         +  E    
Sbjct: 118 S--KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMY 175

Query: 477 ------SNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 529
                 S+++ FGVL++E+ + G++PY            +  +  +  +           
Sbjct: 176 SKFSSKSDIWAFGVLMWEIYSLGKMPY------------ERFTNSETAEHIAQGLRLYRP 223

Query: 530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
               E +  ++ SC     ++RPT + + + + ++
Sbjct: 224 HLASEKVYTIMYSCWHEKADERPTFKILLSNILDV 258

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (360), Expect = 4e-39
 Identities = 59/289 (20%), Positives = 112/289 (38%), Gaps = 34/289 (11%)

Query: 288 PKLKRSELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ 345
             L +   E   E       +G    G V+ GT +    +A+ ++   +           
Sbjct: 5   QGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE------A 58

Query: 346 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 405
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 59  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGETGKYLRLPQL 115

Query: 406 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK 465
           + +A  +A  + ++ ++N    H  L ++ + + E+   K++D      I   E  A   
Sbjct: 116 VDMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQG 173

Query: 466 KLSS----AP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ 515
                   AP        +++S+V++FG+LL E+ T          + E           
Sbjct: 174 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV---------- 223

Query: 516 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
            L Q           E  E+L +L+  C R +PE+RPT   + A L + 
Sbjct: 224 -LDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 271

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (356), Expect = 1e-38
 Identities = 52/275 (18%), Positives = 96/275 (34%), Gaps = 32/275 (11%)

Query: 300 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 356
           ED+     IG+   G   K    S+G  +    +   S  +  K        +++ L ++
Sbjct: 4   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQ---MLVSEVNLLREL 60

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH--IKESEHLDWGMRLRIAMGMAY 414
            H N V       +    T  +V EY   G L   I    KE ++LD    LR+   +  
Sbjct: 61  KHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTL 120

Query: 415 CLEHMHQLN---PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS--- 468
            L+  H+ +     + H  L  + V L      KL D      +      A +   +   
Sbjct: 121 ALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYY 180

Query: 469 SAP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
            +P      S + +S++++ G LL+E+     P+               S  +   +  +
Sbjct: 181 MSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPF------------TAFSQKELAGKIRE 228

Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
                      + L E+I   +      RP++ +I
Sbjct: 229 GKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEI 263

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  140 bits (354), Expect = 3e-38
 Identities = 53/286 (18%), Positives = 115/286 (40%), Gaps = 37/286 (12%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRK 348
           ++R+++        + +G    G VY+G      + +AV ++   + +        +F K
Sbjct: 14  MERTDIT-----MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME------VEEFLK 62

Query: 349 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI 408
           +   + ++ H N V L+G C  E PF  +   E+   G L +++     + +   + L +
Sbjct: 63  EAAVMKEIKHPNLVQLLGVCTREPPFYIIT--EFMTYGNLLDYLRECNRQEVSAVVLLYM 120

Query: 409 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS 468
           A  ++  +E++ +      H  L +    + E++  K++D      +      A +    
Sbjct: 121 ATQISSAMEYLEK--KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 178

Query: 469 ----SAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ 518
               +AP        S++S+V+ FGVLL+E+ T  +                +   Q  +
Sbjct: 179 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY-----------PGIDLSQVYE 227

Query: 519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
                      E   E + EL+++C + +P  RP+  +I      +
Sbjct: 228 LLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 273

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  139 bits (352), Expect = 7e-38
 Identities = 55/318 (17%), Positives = 110/318 (34%), Gaps = 62/318 (19%)

Query: 288 PKLKRSELEAACEDFS--NVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWP 339
           PKL    LE    +      IG    G V++              +AV  +     ++  
Sbjct: 3   PKLL--SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLK----EEAS 56

Query: 340 KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH------ 393
            +++  F+++   +++ ++ N V L+G C   +P    ++FEY   G L E +       
Sbjct: 57  ADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP--MCLLFEYMAYGDLNEFLRSMSPHT 114

Query: 394 ----------------IKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH 437
                                 L    +L IA  +A  + ++ +      H  L +    
Sbjct: 115 VCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK--FVHRDLATRNCL 172

Query: 438 LTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP-----------SASLESNVYNFGVLL 486
           + E+   K++D      I  A+        +                + ES+V+ +GV+L
Sbjct: 173 VGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVL 232

Query: 487 FEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRA 546
           +E+ +  L                ++  + +    D  + +  E     L  L++ C   
Sbjct: 233 WEIFSYGLQPYYG-----------MAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSK 281

Query: 547 DPEKRPTMRDIAAILREI 564
            P  RP+   I  IL+ +
Sbjct: 282 LPADRPSFCSIHRILQRM 299

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 1e-37
 Identities = 54/274 (19%), Positives = 106/274 (38%), Gaps = 32/274 (11%)

Query: 304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
             +GS   GTV KG       +   +V +   +     L+ +   + + + ++++   V 
Sbjct: 13  KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVR 72

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 423
           +IG CE E   + M+V E A  G L +++   ++ H+     + +   ++  ++++ + N
Sbjct: 73  MIGICEAE---SWMLVMEMAELGPLNKYLQ--QNRHVKDKNIIELVHQVSMGMKYLEESN 127

Query: 424 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS------AP------ 471
               H  L +  V L   + AK+SD      +   E    ++          AP      
Sbjct: 128 --FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYY 185

Query: 472 SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 530
             S +S+V++FGVL++E  + G+ PY              + G +               
Sbjct: 186 KFSSKSDVWSFGVLMWEAFSYGQKPY------------RGMKGSEVTAMLEKGERMGCPA 233

Query: 531 EQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
                + +L+  C   D E RP    +   LR  
Sbjct: 234 GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 267

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (347), Expect = 2e-37
 Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 29/268 (10%)

Query: 302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 360
           F   IG     TVYKG      VE+A   +     +   K+   +F+++ + L  + H N
Sbjct: 13  FDIEIGRGSFKTVYKGLDTETTVEVAWCELQD---RKLTKSERQRFKEEAEMLKGLQHPN 69

Query: 361 FVNLIGFCEE--EEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH 418
            V      E   +     ++V E   +GTL  ++     + +   +       +   L+ 
Sbjct: 70  IVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK--RFKVMKIKVLRSWCRQILKGLQF 127

Query: 419 MHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDL---SFWNEIAMAEMAATSKKLSSAP--- 471
           +H   PPI H  L    + +T    + K+ DL   +         +  T + +  AP   
Sbjct: 128 LHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFM--APEMY 185

Query: 472 --SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 529
                   +VY FG+ + EM T   PY  +  +         SGV+P          SFD
Sbjct: 186 EEKYDESVDVYAFGMCMLEMATSEYPYS-ECQNAAQIYRRVTSGVKPA---------SFD 235

Query: 530 EEQLETLGELIKSCVRADPEKRPTMRDI 557
           +  +  + E+I+ C+R + ++R +++D+
Sbjct: 236 KVAIPEVKEIIEGCIRQNKDERYSIKDL 263

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (346), Expect = 4e-37
 Identities = 47/275 (17%), Positives = 101/275 (36%), Gaps = 38/275 (13%)

Query: 306 IGSSPIGTVYKGTL---SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
           +G    G+V +G        +++A+  +   + K   +    +  ++   + ++++   V
Sbjct: 17  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTE----EMMREAQIMHQLDNPYIV 72

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 422
            LIG C+ E      +V E A  G L + +   + E +       +   ++  ++++ + 
Sbjct: 73  RLIGVCQAEALM---LVMEMAGGGPLHKFLV-GKREEIPVSNVAELLHQVSMGMKYLEEK 128

Query: 423 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP----------- 471
           N    H  L +  V L   + AK+SD      +   +   T++     P           
Sbjct: 129 N--FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINF 186

Query: 472 -SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 529
              S  S+V+++GV ++E ++ G+ PY              + G + +            
Sbjct: 187 RKFSSRSDVWSYGVTMWEALSYGQKPY------------KKMKGPEVMAFIEQGKRMECP 234

Query: 530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
            E    L  L+  C     E RP    +   +R  
Sbjct: 235 PECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 269

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (339), Expect = 3e-36
 Identities = 52/285 (18%), Positives = 109/285 (38%), Gaps = 29/285 (10%)

Query: 293 SELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-DWPKNLEVQFRKKID 351
           +E+  +C     VIG+   G VYKG L          V++ + K  + +   V F  +  
Sbjct: 2   TEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAG 61

Query: 352 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMG 411
            + + +H N + L G   + +P   M++ EY  NG   +    ++         + +  G
Sbjct: 62  IMGQFSHHNIIRLEGVISKYKPM--MIITEYMENGA-LDKFLREKDGEFSVLQLVGMLRG 118

Query: 412 MAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP 471
           +A  ++++   N    H  L +  + +  +   K+SD      +     A  +      P
Sbjct: 119 IAAGMKYLA--NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIP 176

Query: 472 SASL------------ESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ 519
                            S+V++FG++++E++T                   LS  + ++ 
Sbjct: 177 IRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERP-----------YWELSNHEVMKA 225

Query: 520 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
             D        +    + +L+  C + +  +RP   DI +IL ++
Sbjct: 226 INDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 270

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  135 bits (340), Expect = 5e-36
 Identities = 48/263 (18%), Positives = 83/263 (31%), Gaps = 28/263 (10%)

Query: 304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
             IG    G VY    + N   +A+  +S +  +           K++  L K+ H N +
Sbjct: 21  REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS--NEKWQDIIKEVRFLQKLRHPNTI 78

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 422
              G    E      +V EY            K  + L       +  G    L ++H  
Sbjct: 79  QYRGCYLREHTA--WLVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSH 134

Query: 423 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--------MAATSKKLSSAPSAS 474
           N  + H  + +  + L+E    KL D    + +A A         MA             
Sbjct: 135 N--MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYD 192

Query: 475 LESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE 534
            + +V++ G+   E+   + P    N +             P         S       E
Sbjct: 193 GKVDVWSLGITCIELAERKPPL--FNMNAMSALYHIAQNESPA--LQSGHWS-------E 241

Query: 535 TLGELIKSCVRADPEKRPTMRDI 557
                + SC++  P+ RPT   +
Sbjct: 242 YFRNFVDSCLQKIPQDRPTSEVL 264

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  134 bits (338), Expect = 6e-36
 Identities = 51/289 (17%), Positives = 104/289 (35%), Gaps = 36/289 (12%)

Query: 293 SELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFRKKI 350
            E++ +C     VIG+   G V  G L      EI VA +    +    K     F  + 
Sbjct: 21  KEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVA-IKTLKSGYTEKQRR-DFLSEA 78

Query: 351 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAM 410
             + + +H N ++L G   +  P   M++ E+  NG+L   +   + +       + +  
Sbjct: 79  SIMGQFDHPNVIHLEGVVTKSTPV--MIITEFMENGSLDSFLRQNDGQF-TVIQLVGMLR 135

Query: 411 GMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS- 469
           G+A  ++++        H  L +  + +  +   K+SD      +       T       
Sbjct: 136 GIAAGMKYLAD--MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGG 193

Query: 470 -------APSASL------ESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 515
                  AP A         S+V+++G++++E+++ G  PY              ++   
Sbjct: 194 KIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPY------------WDMTNQD 241

Query: 516 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
            +             +    L +L+  C + D   RP    I   L ++
Sbjct: 242 VINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKM 290

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 8e-35
 Identities = 65/305 (21%), Positives = 122/305 (40%), Gaps = 48/305 (15%)

Query: 285 TGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLE 343
           T  P L  ++++     F +VIG    G V K  +  +G+ +  A   +       K+  
Sbjct: 2   TIYPVLDWNDIK-----FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS--KDDH 54

Query: 344 VQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH--------- 393
             F  +++ L K+ +H N +NL+G CE        +  EYAP+G L + +          
Sbjct: 55  RDFAGELEVLCKLGHHPNIINLLGACEHRGY--LYLAIEYAPHGNLLDFLRKSRVLETDP 112

Query: 394 -----IKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD 448
                   +  L     L  A  +A  ++++ Q      H  L +  + + E+Y AK++D
Sbjct: 113 AFAIANSTASTLSSQQLLHFAADVARGMDYLSQ--KQFIHRDLAARNILVGENYVAKIAD 170

Query: 449 --LSFWNEIAMAEMAATSKKLSSAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVD 499
             LS   E+ + +          A  +      +  S+V+++GVLL+E+V+ G  PY   
Sbjct: 171 FGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPY--C 228

Query: 500 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 559
             +  +       G +                  + + +L++ C R  P +RP+   I  
Sbjct: 229 GMTCAELYEKLPQGYRL----------EKPLNCDDEVYDLMRQCWREKPYERPSFAQILV 278

Query: 560 ILREI 564
            L  +
Sbjct: 279 SLNRM 283

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 8e-35
 Identities = 56/309 (18%), Positives = 102/309 (33%), Gaps = 57/309 (18%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLE 343
             R+ L      F   +G+   G V + T          + +AV  +  ++     +   
Sbjct: 20  FPRNRLS-----FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTERE--- 71

Query: 344 VQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH--- 399
                ++  LS + NH N VNL+G C    P   +++ EY   G L   +  K       
Sbjct: 72  -ALMSELKVLSYLGNHMNIVNLLGACTIGGP--TLVITEYCCYGDLLNFLRRKRDSFICS 128

Query: 400 -------------LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL 446
                        LD    L  +  +A  +  +   N    H  L +  + LT     K+
Sbjct: 129 KTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN--CIHRDLAARNILLTHGRITKI 186

Query: 447 SDLSFWNEIAMAEMAATSKKLSSAP-----------SASLESNVYNFGVLLFEMVTGRLP 495
            D     +I                             + ES+V+++G+ L+E+ +    
Sbjct: 187 CDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSS 246

Query: 496 YLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMR 555
                     +      G + L            E     + +++K+C  ADP KRPT +
Sbjct: 247 PYPGMPVDSKFYKMIKEGFRML----------SPEHAPAEMYDIMKTCWDADPLKRPTFK 296

Query: 556 DIAAILREI 564
            I  ++ + 
Sbjct: 297 QIVQLIEKQ 305

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  130 bits (327), Expect = 1e-34
 Identities = 54/280 (19%), Positives = 102/280 (36%), Gaps = 37/280 (13%)

Query: 300 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWP----KNLEVQFRKKIDT 352
           E++    ++G      V +        E AV  + V     +     + L     K++D 
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62

Query: 353 LSKVN-HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMG 411
           L KV+ H N + L    E    F   +VF+    G LF+++   E   L      +I   
Sbjct: 63  LRKVSGHPNIIQLKDTYETNTFF--FLVFDLMKKGELFDYLT--EKVTLSEKETRKIMRA 118

Query: 412 MAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA--------------M 457
           +   +  +H+LN  I H  L    + L +D   KL+D  F  ++               +
Sbjct: 119 LLEVICALHKLN--IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYL 176

Query: 458 AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL 517
           A          + P    E ++++ GV+++ ++ G  P+   +          +SG    
Sbjct: 177 APEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPF--WHRKQMLMLRMIMSGNYQF 234

Query: 518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
                   S       +T+ +L+   +   P+KR T  + 
Sbjct: 235 GSPEWDDYS-------DTVKDLVSRFLVVQPQKRYTAEEA 267

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 5e-34
 Identities = 53/279 (18%), Positives = 96/279 (34%), Gaps = 32/279 (11%)

Query: 301 DFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH 358
                +G    G V +G     +G  ++VA   +             F ++++ +  ++H
Sbjct: 11  RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDH 70

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH 418
           +N + L G           MV E AP G+L + +  K   H   G   R A+ +A  + +
Sbjct: 71  RNLIRLYGVVLTPPMK---MVTELAPLGSLLDRLR-KHQGHFLLGTLSRYAVQVAEGMGY 126

Query: 419 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSA----- 473
           +        H  L +  + L      K+ D      +   +     ++    P A     
Sbjct: 127 LESKR--FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPE 184

Query: 474 -------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL 525
                  S  S+ + FGV L+EM T G+ P+     +            + L        
Sbjct: 185 SLKTRTFSHASDTWMFGVTLWEMFTYGQEPW--IGLNGSQILHKIDKEGERL-------- 234

Query: 526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
               E+  + +  ++  C    PE RPT   +   L E 
Sbjct: 235 -PRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 272

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 1e-33
 Identities = 41/310 (13%), Positives = 102/310 (32%), Gaps = 62/310 (20%)

Query: 295 LEAACEDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKID 351
           +E   +DF   + +G+   G V+K +   +G+ +A   + +            Q  +++ 
Sbjct: 1   MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRN----QIIRELQ 56

Query: 352 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMG 411
            L + N    V   G    +      +  E+   G+L + +   ++  +   +  ++++ 
Sbjct: 57  VLHECNSPYIVGFYGAFYSDGEI--SICMEHMDGGSLDQVLK--KAGRIPEQILGKVSIA 112

Query: 412 MAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA-------------MA 458
           +   L ++ + +  I H  +  S + +      KL D     ++              M+
Sbjct: 113 VIKGLTYLREKHK-IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMS 171

Query: 459 EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN-------------GSLED 505
                    S        S++++ G+ L EM  GR P    +             G   +
Sbjct: 172 PERLQGTHYSVQ------SDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAE 225

Query: 506 WAADYLSGVQPLQQFVDPTLSSFDEEQL------------------ETLGELIKSCVRAD 547
                 +  +PL  +   +       +L                      + +  C+  +
Sbjct: 226 TPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKN 285

Query: 548 PEKRPTMRDI 557
           P +R  ++ +
Sbjct: 286 PAERADLKQL 295

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 2e-33
 Identities = 48/279 (17%), Positives = 97/279 (34%), Gaps = 37/279 (13%)

Query: 301 DFSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 356
           +    IG    G V++G   +     + +A+ +    ++    +    +F ++  T+ + 
Sbjct: 10  ELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVRE----KFLQEALTMRQF 65

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 416
           +H + V LIG   E   +   ++ E    G L           LD    +  A  ++  L
Sbjct: 66  DHPHIVKLIGVITENPVW---IIMELCTLGELRSF-LQVRKYSLDLASLILYAYQLSTAL 121

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLE 476
            ++        H  + +  V ++ +   KL D      +  +     SK        + E
Sbjct: 122 AYLES--KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPE 179

Query: 477 ----------SNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL 525
                     S+V+ FGV ++E++  G  P+              +     + +  +   
Sbjct: 180 SINFRRFTSASDVWMFGVCMWEILMHGVKPF------------QGVKNNDVIGRIENGER 227

Query: 526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
                    TL  L+  C   DP +RP   ++ A L  I
Sbjct: 228 LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 266

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (313), Expect = 7e-33
 Identities = 47/268 (17%), Positives = 98/268 (36%), Gaps = 31/268 (11%)

Query: 300 EDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 356
           EDF     +G    G VY      +   +A+  +  A  +     +E Q R++++  S +
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK--AGVEHQLRREVEIQSHL 63

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 416
            H N + L G+  +       ++ EYAP GT++  +   +    D          +A  L
Sbjct: 64  RHPNILRLYGYFHDATRV--YLILEYAPLGTVYRELQ--KLSKFDEQRTATYITELANAL 119

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS-SAP---- 471
            + H     + H  +    + L      K++D  +      +        L    P    
Sbjct: 120 SYCHSKR--VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIE 177

Query: 472 --SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 529
                 + ++++ GVL +E + G+ P+  +  + ++              FV        
Sbjct: 178 GRMHDEKVDLWSLGVLCYEFLVGKPPF--EANTYQETYKRISRVEFTFPDFVTEGAR--- 232

Query: 530 EEQLETLGELIKSCVRADPEKRPTMRDI 557
                   +LI   ++ +P +RP +R++
Sbjct: 233 --------DLISRLLKHNPSQRPMLREV 252

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 1e-32
 Identities = 51/264 (19%), Positives = 101/264 (38%), Gaps = 32/264 (12%)

Query: 304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
             IG    GTVY    ++ G E+A+  +++          +     +I  + +  + N V
Sbjct: 26  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK-----KELIINEILVMRENKNPNIV 80

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 422
           N +      +     +V EY   G+L + +       +D G    +       LE +H  
Sbjct: 81  NYLDSYLVGDEL--WVVMEYLAGGSLTDVVT---ETCMDEGQIAAVCRECLQALEFLHSN 135

Query: 423 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS---SAP------SA 473
              + H  + S  + L  D + KL+D  F  +I   +   ++   +    AP      + 
Sbjct: 136 Q--VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY 193

Query: 474 SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL 533
             + ++++ G++  EM+ G  PYL +N       A YL       +  +P          
Sbjct: 194 GPKVDIWSLGIMAIEMIEGEPPYLNEN----PLRALYLIATNGTPELQNP--EKLSAI-- 245

Query: 534 ETLGELIKSCVRADPEKRPTMRDI 557
               + +  C+  D EKR + +++
Sbjct: 246 --FRDFLNRCLDMDVEKRGSAKEL 267

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 2e-32
 Identities = 42/269 (15%), Positives = 81/269 (30%), Gaps = 35/269 (13%)

Query: 304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
             +G    G VYK       V  A   +   S ++        +  +ID L+  +H N V
Sbjct: 18  GELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELE-----DYMVEIDILASCDHPNIV 72

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 422
            L+     E      ++ E+   G +   +  +    L       +       L ++H  
Sbjct: 73  KLLDAFYYENNL--WILIEFCAGGAVDAVML-ELERPLTESQIQVVCKQTLDALNYLHDN 129

Query: 423 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK--------------KLS 468
              I H  L +  +  T D   KL+D     +         S               + S
Sbjct: 130 K--IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETS 187

Query: 469 SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 528
                  +++V++ G+ L EM     P+     +                   +P   + 
Sbjct: 188 KDRPYDYKADVWSLGITLIEMAEIEPPH--HELNPMRVLLKIAKS--------EPPTLAQ 237

Query: 529 DEEQLETLGELIKSCVRADPEKRPTMRDI 557
                    + +K C+  + + R T   +
Sbjct: 238 PSRWSSNFKDFLKKCLEKNVDARWTTSQL 266

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (308), Expect = 4e-32
 Identities = 52/273 (19%), Positives = 91/273 (33%), Gaps = 35/273 (12%)

Query: 300 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 356
           ED+     +G    G V           +AV  V +  A D P+      +K+I     +
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE----NIKKEICINKML 60

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 416
           NH+N V   G   E       +  EY   G LF+ I       +      R    +   +
Sbjct: 61  NHENVVKFYGHRREGNIQ--YLFLEYCSGGELFDRIE--PDIGMPEPDAQRFFHQLMAGV 116

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK---------- 466
            ++H +   I H  +    + L E    K+SD                 K          
Sbjct: 117 VYLHGIG--ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 174

Query: 467 --LSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT 524
             L      +   +V++ G++L  M+ G LP+   + S ++++          ++     
Sbjct: 175 ELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYS------DWKEKKTYLNP 228

Query: 525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
               D   L     L+   +  +P  R T+ DI
Sbjct: 229 WKKIDSAPLA----LLHKILVENPSARITIPDI 257

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 5e-32
 Identities = 52/301 (17%), Positives = 112/301 (37%), Gaps = 51/301 (16%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLE 343
           + R ++       S  +G    G VY+G             +A+ +V+    +       
Sbjct: 17  VAREKIT-----MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN----EAASMRER 67

Query: 344 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH--------IK 395
           ++F  +   + + N  + V L+G   + +P   +++ E    G L  ++           
Sbjct: 68  IEFLNEASVMKEFNCHHVVRLLGVVSQGQP--TLVIMELMTRGDLKSYLRSLRPAMANNP 125

Query: 396 ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI 455
                     +++A  +A  + +++       H  L +    + ED+  K+ D     +I
Sbjct: 126 VLAPPSLSKMIQMAGEIADGMAYLNA--NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDI 183

Query: 456 AMAEMAATSKKLSSAP-----------SASLESNVYNFGVLLFEMVTG-RLPYLVDNGSL 503
              +      K                  +  S+V++FGV+L+E+ T    PY       
Sbjct: 184 YETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPY------- 236

Query: 504 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 563
                  LS  Q L+  ++  L    +   + L EL++ C + +P+ RP+  +I + ++E
Sbjct: 237 -----QGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE 291

Query: 564 I 564
            
Sbjct: 292 E 292

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (311), Expect = 5e-32
 Identities = 37/264 (14%), Positives = 92/264 (34%), Gaps = 31/264 (11%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
            +G    G V++    S+        V V          +V  +K+I  L+   H+N ++
Sbjct: 12  DLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD------QVLVKKEISILNIARHRNILH 65

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 423
           L    E  E    +M+FE+     +FE I+   +  L+    +     +   L+ +H  N
Sbjct: 66  LHESFESMEEL--VMIFEFISGLDIFERIN-TSAFELNEREIVSYVHQVCEALQFLHSHN 122

Query: 424 PPIAHNYLNSSAVHLT--EDYAAKLSDLSFWNEIAMAEMAATSK--------KLSSAPSA 473
             I H  +    +          K+ +     ++   +              ++      
Sbjct: 123 --IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVV 180

Query: 474 SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL 533
           S  +++++ G L++ +++G  P+L +    +    + ++      +     +S       
Sbjct: 181 STATDMWSLGTLVYVLLSGINPFLAETN--QQIIENIMNAEYTFDEEAFKEIS------- 231

Query: 534 ETLGELIKSCVRADPEKRPTMRDI 557
               + +   +  + + R T  + 
Sbjct: 232 IEAMDFVDRLLVKERKSRMTASEA 255

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  124 bits (311), Expect = 1e-31
 Identities = 41/264 (15%), Positives = 97/264 (36%), Gaps = 30/264 (11%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
            +GS   G V++    + G       ++     D     +   + +I  +++++H   +N
Sbjct: 36  ELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLD-----KYTVKNEISIMNQLHHPKLIN 90

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 423
           L    E++     +++ E+   G LF+ I   E   +     +         L+HMH+ +
Sbjct: 91  LHDAFEDKYEM--VLILEFLSGGELFDRIA-AEDYKMSEAEVINYMRQACEGLKHMHEHS 147

Query: 424 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLE------- 476
             I H  +    +      A+ +  + F     +          ++A  A+ E       
Sbjct: 148 --IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPV 205

Query: 477 ---SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL 533
              ++++  GVL + +++G  P+        +   +         +    ++S       
Sbjct: 206 GFYTDMWAIGVLGYVLLSGLSPF--AGEDDLETLQNVKRCDWEFDEDAFSSVS------- 256

Query: 534 ETLGELIKSCVRADPEKRPTMRDI 557
               + IK+ ++ +P KR T+ D 
Sbjct: 257 PEAKDFIKNLLQKEPRKRLTVHDA 280

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  123 bits (309), Expect = 2e-31
 Identities = 54/268 (20%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
           D    +G+   G V++ T  + G   A   V      D     +   RK+I T+S + H 
Sbjct: 29  DIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESD-----KETVRKEIQTMSVLRHP 83

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 419
             VNL    E++     +M++E+   G LFE +   E   +     +     +   L HM
Sbjct: 84  TLVNLHDAFEDDNEM--VMIYEFMSGGELFEKVA-DEHNKMSEDEAVEYMRQVCKGLCHM 140

Query: 420 HQLNPPIAHNYLNSSAVHLT--EDYAAKLSDLSFWNEIAMAEMAATSKKLSS--AP---- 471
           H+ N    H  L    +  T       KL D      +   +    +   +   AP    
Sbjct: 141 HENN--YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAE 198

Query: 472 --SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 529
                  +++++ GVL + +++G  P+  +N   ++   +  S    +       +S   
Sbjct: 199 GKPVGYYTDMWSVGVLSYILLSGLSPFGGEND--DETLRNVKSCDWNMDDSAFSGIS--- 253

Query: 530 EEQLETLGELIKSCVRADPEKRPTMRDI 557
               E   + I+  + ADP  R T+   
Sbjct: 254 ----EDGKDFIRKLLLADPNTRMTIHQA 277

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  120 bits (302), Expect = 7e-31
 Identities = 45/267 (16%), Positives = 88/267 (32%), Gaps = 27/267 (10%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
           DF +V+G+     V           +A+  ++    K   +  E     +I  L K+ H 
Sbjct: 12  DFRDVLGTGAFSEVILAEDKRTQKLVAIKCIA----KKALEGKEGSMENEIAVLHKIKHP 67

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 419
           N V L    E        ++ +    G LF+   I E          R+   +   ++++
Sbjct: 68  NIVALDDIYESGGHL--YLIMQLVSGGELFD--RIVEKGFYTERDASRLIFQVLDAVKYL 123

Query: 420 HQLN-PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT--------SKKLSSA 470
           H L          N     L ED    +SD           + +T        + ++ + 
Sbjct: 124 HDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQ 183

Query: 471 PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 530
              S   + ++ GV+ + ++ G  P+   + +        L             +S    
Sbjct: 184 KPYSKAVDCWSIGVIAYILLCGYPPF--YDENDAKLFEQILKAEYEFDSPYWDDIS---- 237

Query: 531 EQLETLGELIKSCVRADPEKRPTMRDI 557
              ++  + I+  +  DPEKR T    
Sbjct: 238 ---DSAKDFIRHLMEKDPEKRFTCEQA 261

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 8e-31
 Identities = 41/280 (14%), Positives = 98/280 (35%), Gaps = 33/280 (11%)

Query: 300 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 356
            +F    V+GS   GTVYKG  +  G ++ +        +        +   +   ++ V
Sbjct: 9   TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 68

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 416
           ++ +   L+G C         ++ +  P G L ++   +  +++     L   + +A  +
Sbjct: 69  DNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDY-VREHKDNIGSQYLLNWCVQIAKGM 124

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP----- 471
            ++      + H  L +  V +      K++D      +   E    ++           
Sbjct: 125 NYLEDRR--LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 182

Query: 472 ------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT 524
                   + +S+V+++GV ++E++T G  PY            D +   +         
Sbjct: 183 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPY------------DGIPASEISSILEKGE 230

Query: 525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 564
                      +  ++  C   D + RP  R++     ++
Sbjct: 231 RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 270

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 3e-30
 Identities = 59/314 (18%), Positives = 109/314 (34%), Gaps = 60/314 (19%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGTL--------SNGVEIAVASVSVASAKDWPKN 341
           L R  L          +G    G V             +   ++AV  +      D  + 
Sbjct: 10  LPRDRLV-----LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLK----SDATEK 60

Query: 342 LEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK----- 395
                  +++ +  +  HKN +NL+G C ++ P    ++ EYA  G L E++  +     
Sbjct: 61  DLSDLISEMEMMKMIGKHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGL 118

Query: 396 ---------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL 446
                      E L     +  A  +A  +E++        H  L +  V +TED   K+
Sbjct: 119 EYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS--KKCIHRDLAARNVLVTEDNVMKI 176

Query: 447 SDLSFWNEIAMAEMAATSKKLSSAP-----------SASLESNVYNFGVLLFEMVT-GRL 494
           +D     +I   +    +                    + +S+V++FGVLL+E+ T G  
Sbjct: 177 ADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGS 236

Query: 495 PYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTM 554
           PY              +   +  +   +             L  +++ C  A P +RPT 
Sbjct: 237 PY------------PGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTF 284

Query: 555 RDIAAILREITGIT 568
           + +   L  I  +T
Sbjct: 285 KQLVEDLDRIVALT 298

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  117 bits (294), Expect = 4e-30
 Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
           ++G   +  V+    L    ++AV  +    A+D   +  ++FR++    + +NH   V 
Sbjct: 14  ILGFGGMSEVHLARDLRLHRDVAVKVLRADLARD--PSFYLRFRREAQNAAALNHPAIVA 71

Query: 364 LIGFCEEEEPFTR--MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ 421
           +    E E P      +V EY    TL + +H      +     + +       L   HQ
Sbjct: 72  VYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH--TEGPMTPKRAIEVIADACQALNFSHQ 129

Query: 422 LNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLSSAPSASLE--- 476
               I H  +  + + ++   A K+ D  ++     +   +  T+  + +A   S E   
Sbjct: 130 NG--IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQAR 187

Query: 477 -------SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 529
                  S+VY+ G +L+E++TG  P+     S    A  ++             LS   
Sbjct: 188 GDSVDARSDVYSLGCVLYEVLTGEPPF--TGDSPVSVAYQHVREDPIPPSARHEGLS--- 242

Query: 530 EEQLETLGELIKSCVRADPEKRP-TMRDIAAILREI 564
                 L  ++   +  +PE R  T  ++ A L  +
Sbjct: 243 ----ADLDAVVLKALAKNPENRYQTAAEMRADLVRV 274

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 1e-29
 Identities = 58/299 (19%), Positives = 106/299 (35%), Gaps = 55/299 (18%)

Query: 301 DFSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 356
           +F  V+GS   G V   T       GV I VA V +   K      E     ++  ++++
Sbjct: 40  EFGKVLGSGAFGKVMNATAYGISKTGVSIQVA-VKMLKEKADSSERE-ALMSELKMMTQL 97

Query: 357 -NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK-------------------- 395
            +H+N VNL+G C    P    ++FEY   G L  ++  K                    
Sbjct: 98  GSHENIVNLLGACTLSGPI--YLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEE 155

Query: 396 -ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE 454
            +   L +   L  A  +A  +E +        H  L +  V +T     K+ D     +
Sbjct: 156 EDLNVLTFEDLLCFAYQVAKGMEFLEF--KSCVHRDLAARNVLVTHGKVVKICDFGLARD 213

Query: 455 IAMAEMAATSKKLSSAP-----------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGS 502
           I                             +++S+V+++G+LL+E+ + G  PY      
Sbjct: 214 IMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPY--PGIP 271

Query: 503 LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 561
           ++      +     +                E +  +++SC   D  KRP+  ++ + L
Sbjct: 272 VDANFYKLIQNGFKMD---------QPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL 321

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (285), Expect = 9e-29
 Identities = 50/272 (18%), Positives = 96/272 (35%), Gaps = 35/272 (12%)

Query: 300 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 356
           EDF    ++G     TV     L+   E A+  +         +N      ++ D +S++
Sbjct: 8   EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIK--ENKVPYVTRERDVMSRL 65

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 416
           +H  FV L    +++E         YA NG L ++I   +    D          +   L
Sbjct: 66  DHPFFVKLYFTFQDDEKL--YFGLSYAKNGELLKYIR--KIGSFDETCTRFYTAEIVSAL 121

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP----- 471
           E++H     I H  L    + L ED   +++D      ++     A +            
Sbjct: 122 EYLHG--KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSP 179

Query: 472 ------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL 525
                 SA   S+++  G +++++V G  P+   N                 Q+ +    
Sbjct: 180 ELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN------------EYLIFQKIIKLEY 227

Query: 526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             F E+      +L++  +  D  KR    ++
Sbjct: 228 -DFPEKFFPKARDLVEKLLVLDATKRLGCEEM 258

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 6e-28
 Identities = 42/281 (14%), Positives = 86/281 (30%), Gaps = 30/281 (10%)

Query: 304 NVIGSSPIGTVYKGT--LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 361
             IG    G V+K     + G  +A+  V V + ++      ++    +  L    H N 
Sbjct: 13  AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNV 72

Query: 362 VNLIGFCEEEEPFTR---MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH 418
           V L   C            +VFE+        ++       +       +   +   L+ 
Sbjct: 73  VRLFDVCTVSRTDRETKLTLVFEHVDQDLT-TYLDKVPEPGVPTETIKDMMFQLLRGLDF 131

Query: 419 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT--------SKKLSSA 470
           +H     + H  L    + +T     KL+D       +      +        + ++   
Sbjct: 132 LHSHR--VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQ 189

Query: 471 PSASLESNVYNFGVLLFEMVTGRLPYLVDN--------------GSLEDWAADYLSGVQP 516
            S +   ++++ G +  EM   +  +   +                 EDW  D     Q 
Sbjct: 190 SSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQA 249

Query: 517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
                   +  F  +  E   +L+  C+  +P KR +    
Sbjct: 250 FHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 290

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 3e-27
 Identities = 44/274 (16%), Positives = 99/274 (36%), Gaps = 44/274 (16%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFV 362
           V+G    G V +        + A+  +              + R++++   +     + V
Sbjct: 19  VLGLGINGKVLQIFNKRTQEKFALKMLQDCP----------KARREVELHWRASQCPHIV 68

Query: 363 NLIGFCEEEEPFTR--MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH 420
            ++   E      +  ++V E    G LF  I  +  +         I   +   ++++H
Sbjct: 69  RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH 128

Query: 421 QLNPPIAHNYLNSSAVHLT---EDYAAKLSDLSFWNEIA--------------MAEMAAT 463
            +N  IAH  +    +  T    +   KL+D  F  E                +A     
Sbjct: 129 SIN--IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLG 186

Query: 464 SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP 523
            +K   +       ++++ GV+++ ++ G  P+  ++G L               +F +P
Sbjct: 187 PEKYDKS------CDMWSLGVIMYILLCGYPPFYSNHG-LAISPGMKTRIRMGQYEFPNP 239

Query: 524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             S   EE    +  LI++ ++ +P +R T+ + 
Sbjct: 240 EWSEVSEE----VKMLIRNLLKTEPTQRMTITEF 269

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 3e-27
 Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 32/280 (11%)

Query: 304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
           + +G     TVYK    +    +A+  + +    +    +     ++I  L +++H N +
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 422
            L+     +      +VF++         I    S  L         +     LE++HQ 
Sbjct: 64  GLLDAFGHKSNI--SLVFDFMETDLEV--IIKDNSLVLTPSHIKAYMLMTLQGLEYLHQ- 118

Query: 423 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSA--------- 473
              I H  L  + + L E+   KL+D            A T + ++    A         
Sbjct: 119 -HWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARM 177

Query: 474 -SLESNVYNFGVLLFEMVTGRLPYLVDN--------------GSLEDWAADY-LSGVQPL 517
             +  +++  G +L E++        D+               + E W     L      
Sbjct: 178 YGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTF 237

Query: 518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
           + F    L        + L +LI+     +P  R T    
Sbjct: 238 KSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQA 277

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 1e-26
 Identities = 48/267 (17%), Positives = 96/267 (35%), Gaps = 29/267 (10%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFV 362
            +GS     V K    S G++ A   +     K   + +  +   +++  L ++ H N +
Sbjct: 17  ELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVI 76

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 422
            L    E +     +++ E    G LF+ +   E E L           +   + ++H  
Sbjct: 77  TLHEVYENKTDV--ILILELVAGGELFDFLA--EKESLTEEEATEFLKQILNGVYYLHS- 131

Query: 423 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS------SAP----- 471
              IAH  L    + L +    K         +A         K         AP     
Sbjct: 132 -LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNY 190

Query: 472 -SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 530
               LE+++++ GV+ + +++G  P+L D    ++  A+  +     +       S    
Sbjct: 191 EPLGLEADMWSIGVITYILLSGASPFLGDT--KQETLANVSAVNYEFEDEYFSNTS---- 244

Query: 531 EQLETLGELIKSCVRADPEKRPTMRDI 557
                  + I+  +  DP+KR T++D 
Sbjct: 245 ---ALAKDFIRRLLVKDPKKRMTIQDS 268

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 1e-26
 Identities = 46/269 (17%), Positives = 89/269 (33%), Gaps = 32/269 (11%)

Query: 300 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 356
           EDF    ++G    G V+           A+ ++          ++E    +K       
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLM-DDDVECTMVEKRVLSLAW 60

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 416
            H    ++    + +E    +M  EY   G L  HI        D       A  +   L
Sbjct: 61  EHPFLTHMFCTFQTKENLFFVM--EYLNGGDLMYHIQ--SCHKFDLSRATFYAAEIILGL 116

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSA--- 473
           + +H     I +  L    + L +D   K++D     E  + +    +   +    A   
Sbjct: 117 QFLHSKG--IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEI 174

Query: 474 ------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 527
                 +   + ++FGVLL+EM+ G+ P+       E+             ++++     
Sbjct: 175 LLGQKYNHSVDWWSFGVLLYEMLIGQSPF--HGQDEEELFHSIRMDNPFYPRWLEKEAK- 231

Query: 528 FDEEQLETLGELIKSCVRADPEKRPTMRD 556
                     +L+      +PEKR  +R 
Sbjct: 232 ----------DLLVKLFVREPEKRLGVRG 250

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 2e-26
 Identities = 49/290 (16%), Positives = 94/290 (32%), Gaps = 45/290 (15%)

Query: 301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
             + VIG+   G VY+  L  +G  +A+  V            +    +++  + K++H 
Sbjct: 23  TDTKVIGNGSFGVVYQAKLCDSGELVAIKKV---------LQDKRFKNRELQIMRKLDHC 73

Query: 360 NFVNLIGFC----EEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWGMRLRIAMGMAY 414
           N V L  F     E+++     +V +Y P        H  +  + L           +  
Sbjct: 74  NIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFR 133

Query: 415 CLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIAMAEMAAT---------S 464
            L ++H     I H  +    + L  D    KL D     ++   E   +          
Sbjct: 134 SLAYIHSFG--ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAP 191

Query: 465 KKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-----------------SLEDWA 507
           + +  A   +   +V++ G +L E++ G+  +  D+G                  + +  
Sbjct: 192 ELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMN 251

Query: 508 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
            +Y     P Q    P    F          L    +   P  R T  + 
Sbjct: 252 PNYTEFKFP-QIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEA 300

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (269), Expect = 4e-26
 Identities = 47/272 (17%), Positives = 90/272 (33%), Gaps = 28/272 (10%)

Query: 300 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKD-WPKNLEVQFRKKIDTLSK 355
            DFS   +IG    G VY       G   A+  +     K    + L +  R  +  +S 
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 356 VNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYC 415
            +    V +       +      + +    G L  H+   +            A  +   
Sbjct: 64  GDCPFIVCMSYAFHTPDKL--SFILDLMNGGDLHYHLS--QHGVFSEADMRFYAAEIILG 119

Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK--------L 467
           LEHMH     + +  L  + + L E    ++SDL    + +  +  A+           L
Sbjct: 120 LEHMHNRF--VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVL 177

Query: 468 SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 527
               +    ++ ++ G +LF+++ G  P+       +D        +    +  D    S
Sbjct: 178 QKGVAYDSSADWFSLGCMLFKLLRGHSPF--RQHKTKDKHEIDRMTLTMAVELPD----S 231

Query: 528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA 559
           F  E    L  L++  ++ D  +R       A
Sbjct: 232 FSPE----LRSLLEGLLQRDVNRRLGCLGRGA 259

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score =  105 bits (263), Expect = 6e-26
 Identities = 40/280 (14%), Positives = 88/280 (31%), Gaps = 35/280 (12%)

Query: 304 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
             IG    G VYK   + G   A+  + +    +    +     ++I  L ++ H N V 
Sbjct: 8   EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE---GIPSTTIREISILKELKHSNIVK 64

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 423
           L            ++VFE+         +       L+        + +   + + H   
Sbjct: 65  LYDVI--HTKKRLVLVFEHLDQDLK--KLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRR 120

Query: 424 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK----------KLSSAPSA 473
             + H  L    + +  +   K++D        +     T +           L  +   
Sbjct: 121 --VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKY 178

Query: 474 SLESNVYNFGVLLFEMVTGRLPYLVDN--------------GSLEDWA--ADYLSGVQPL 517
           S   ++++ G +  EMV G   +   +               + ++W    +        
Sbjct: 179 STTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNF 238

Query: 518 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             +      SF +   E+  +L+   ++ DP +R T +  
Sbjct: 239 TVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQA 278

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 6e-26
 Identities = 42/306 (13%), Positives = 92/306 (30%), Gaps = 52/306 (16%)

Query: 290 LKRSELEAACEDFSNVIGSSPIGTVYKGT------LSNGVEIAVASVSVASAKDWPKNLE 343
             R  L+         +G    G V +         +    +AV  +     +    +  
Sbjct: 10  FPRDRLK-----LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLK----EGATHSEH 60

Query: 344 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE----- 398
                ++  L  + H   V  +     +     M++ E+   G L  ++  K +E     
Sbjct: 61  RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYK 120

Query: 399 ---------HLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL 449
                     L     +  +  +A  +E +        H  L +  + L+E    K+ D 
Sbjct: 121 VAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLAARNILLSEKNVVKICDF 178

Query: 450 SFWNEIAMAEMAATSKKLSSAP-----------SASLESNVYNFGVLLFEMVTGRLPYLV 498
               +I                             +++S+V++FGVLL+E+ +       
Sbjct: 179 GLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 238

Query: 499 DNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIA 558
                E++      G +              +     + + +  C   +P +RPT  ++ 
Sbjct: 239 GVKIDEEFCRRLKEGTRM----------RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELV 288

Query: 559 AILREI 564
             L  +
Sbjct: 289 EHLGNL 294

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 1e-25
 Identities = 51/301 (16%), Positives = 95/301 (31%), Gaps = 39/301 (12%)

Query: 300 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 356
           E+F     IG    G VYK      G  +A+  + + +  +    +     ++I  L ++
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE---GVPSTAIREISLLKEL 58

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 416
           NH N V L+     E      +VFE+  +  L + +       +   +       +   L
Sbjct: 59  NHPNIVKLLDVIHTENKL--YLVFEF-LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGL 115

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK---------- 466
              H     + H  L    + +  + A KL+D        +     T +           
Sbjct: 116 AFCHS--HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEI 173

Query: 467 LSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN--------------GSLEDWAADY-- 510
           L      S   ++++ G +  EMVT R  +  D+                   W      
Sbjct: 174 LLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSM 233

Query: 511 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREITGIT 568
                   ++     S       E    L+   +  DP KR + +   A    +++T   
Sbjct: 234 PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPV 293

Query: 569 P 569
           P
Sbjct: 294 P 294

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 3e-25
 Identities = 38/288 (13%), Positives = 87/288 (30%), Gaps = 43/288 (14%)

Query: 304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
           + IG    G V       N V +A+  +S    + + +    +  ++I  L +  H+N +
Sbjct: 14  SYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQ----RTLREIKILLRFRHENII 69

Query: 363 NLIGFCEEEEPFTRMMVF--EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH 420
            +              V+   +     L++ +    ++HL           +   L+++H
Sbjct: 70  GINDIIRAPTIEQMKDVYLVTHLMGADLYKLLK---TQHLSNDHICYFLYQILRGLKYIH 126

Query: 421 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK-------------L 467
             N  + H  L  S + L      K+ D                               +
Sbjct: 127 SAN--VLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIM 184

Query: 468 SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--------------SLEDWAADYL-- 511
            ++   +   ++++ G +L EM++ R  +   +               S ED        
Sbjct: 185 LNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLK 244

Query: 512 --SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             + +  L        +           +L+   +  +P KR  +   
Sbjct: 245 ARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQA 292

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (258), Expect = 5e-25
 Identities = 42/269 (15%), Positives = 87/269 (32%), Gaps = 30/269 (11%)

Query: 300 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 356
           +DF     +G+   G V+      NG   A+  +                  +   LS V
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVR--LKQVEHTNDERLMLSIV 61

Query: 357 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 416
            H   + + G  ++ +     M+ +Y   G LF  +     +     +    A  +   L
Sbjct: 62  THPFIIRMWGTFQDAQQI--FMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLAL 117

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP----- 471
           E++H     I +  L    + L ++   K++D  F   +              AP     
Sbjct: 118 EYLHS--KDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVST 175

Query: 472 -SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 530
              +   + ++FG+L++EM+ G  P+   + +        L+       F +  +     
Sbjct: 176 KPYNKSIDWWSFGILIYEMLAGYTPF--YDSNTMKTYEKILNAELRFPPFFNEDVK---- 229

Query: 531 EQLETLGELIKSCVRADPEKRPTMRDIAA 559
                  +L+   +  D  +R        
Sbjct: 230 -------DLLSRLITRDLSQRLGNLQNGT 251

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  102 bits (254), Expect = 1e-24
 Identities = 42/292 (14%), Positives = 79/292 (27%), Gaps = 40/292 (13%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
            IGS   G +Y GT ++ G E+A+    V +          Q   +      +     + 
Sbjct: 14  KIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHP-------QLHIESKIYKMMQGGVGIP 66

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 423
            I +C  E  +  +MV E          +    S        L +A  M   +E++H  N
Sbjct: 67  TIRWCGAEGDY-NVMVMELLGPSLED--LFNFCSRKFSLKTVLLLADQMISRIEYIHSKN 123

Query: 424 PPIAHNYL---NSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS----------A 470
               H  +   N       +     + D     +   A          +          +
Sbjct: 124 --FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYAS 181

Query: 471 P------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT 524
                    S   ++ + G +L     G LP+             Y    +         
Sbjct: 182 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPW--QGLKAATKRQKYERISEKKMSTPIEV 239

Query: 525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI---TGITPDGAI 573
           L      +       +  C     + +P    +  + R +    G + D   
Sbjct: 240 LCKGYPSEFA---TYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 288

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-24
 Identities = 48/266 (18%), Positives = 94/266 (35%), Gaps = 37/266 (13%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPK-NLEVQFRKKIDTLSKVN--HKN 360
           ++GS   G+VY G  +S+ + +A+  V      DW +     +   ++  L KV+     
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70

Query: 361 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH 420
            + L+ + E  + F  +++ E            I E   L   +       +   + H H
Sbjct: 71  VIRLLDWFERPDSF--VLILERPEPVQDLFD-FITERGALQEELARSFFWQVLEAVRHCH 127

Query: 421 QLNPPIAHNYLNSSAVHLTED-YAAKLSDL---SFWNEIAMAEMAATS-----KKLSSAP 471
                + H  +    + +  +    KL D    +   +    +   T      + +    
Sbjct: 128 NCG--VLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHR 185

Query: 472 SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 531
                + V++ G+LL++MV G +P+  D   +              Q F    +S     
Sbjct: 186 YHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRG------------QVFFRQRVS----- 228

Query: 532 QLETLGELIKSCVRADPEKRPTMRDI 557
                  LI+ C+   P  RPT  +I
Sbjct: 229 --SECQHLIRWCLALRPSDRPTFEEI 252

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 5e-24
 Identities = 48/296 (16%), Positives = 99/296 (33%), Gaps = 51/296 (17%)

Query: 304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
             IG    G V+K      G ++A+  V + + K+      +   ++I  L  + H+N V
Sbjct: 16  AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE---GFPITALREIKILQLLKHENVV 72

Query: 363 NLIGFCEEEEPFTRM------MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 416
           NLI  C  +            +VF++  +       ++     L      R+   +   L
Sbjct: 73  NLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSE--IKRVMQMLLNGL 130

Query: 417 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK---------- 466
            ++H+    I H  + ++ V +T D   KL+D       ++A+ +  ++           
Sbjct: 131 YYIHRNK--ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYR 188

Query: 467 ----LSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
               L          +++  G ++ EM T          + +   A        +   V 
Sbjct: 189 PPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM--QGNTEQHQLALISQLCGSITPEVW 246

Query: 523 PTLSSFDEEQLETLG---------------------ELIKSCVRADPEKRPTMRDI 557
           P + +++  +   L                      +LI   +  DP +R    D 
Sbjct: 247 PNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDA 302

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-23
 Identities = 40/283 (14%), Positives = 87/283 (30%), Gaps = 39/283 (13%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
            +GS   G V        G ++A+  +      +       +  +++  L  + H+N + 
Sbjct: 25  PVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSE---LFAKRAYRELRLLKHMRHENVIG 81

Query: 364 LIGFCEEEEPFTR----MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 419
           L+     +E         +V  +           + + E L       +   M   L ++
Sbjct: 82  LLDVFTPDETLDDFTDFYLVMPFMGTDLG----KLMKHEKLGEDRIQFLVYQMLKGLRYI 137

Query: 420 HQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLE--- 476
           H       H  L    + + ED   K+ D     +           +   AP   L    
Sbjct: 138 HAAGII--HRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMR 195

Query: 477 ----SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP---------------- 516
                ++++ G ++ EM+TG+  +   +   +      ++G  P                
Sbjct: 196 YTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYM 255

Query: 517 --LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
             L +      +S           L++  +  D E+R T  + 
Sbjct: 256 KGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEA 298

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.1 bits (238), Expect = 2e-22
 Identities = 55/281 (19%), Positives = 93/281 (33%), Gaps = 39/281 (13%)

Query: 300 EDFS--NVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTL 353
           E+F    V+G+   G V+          G   A+  +  A+     K  E   R +   L
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTE-HTRTERQVL 82

Query: 354 SKVNHKNF-VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGM 412
             +    F V L    + E     ++  +Y   G LF H+   + E             +
Sbjct: 83  EHIRQSPFLVTLHYAFQTETKLHLIL--DYINGGELFTHLS--QRERFTEHEVQIYVGEI 138

Query: 413 AYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA------------MAEM 460
              LEH+H+L   I +  +    + L  +    L+D     E                E 
Sbjct: 139 VLALEHLHKLG--IIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEY 196

Query: 461 AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLEDWAADYLSGVQPLQ 518
            A               + ++ GVL++E++TG  P+ VD    S  + +   L    P  
Sbjct: 197 MAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYP 256

Query: 519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 559
           Q +                +LI+  +  DP+KR       A
Sbjct: 257 QEMSALAK-----------DLIQRLLMKDPKKRLGCGPRDA 286

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 91.0 bits (225), Expect = 7e-21
 Identities = 31/292 (10%), Positives = 77/292 (26%), Gaps = 42/292 (14%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
            IG    G +++GT L N  ++A+      S          Q R +  T   +     + 
Sbjct: 12  RIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAP-------QLRDEYRTYKLLAGCTGIP 64

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 423
            + +  +E     ++V +    G   E +                A  M   ++ +H+ +
Sbjct: 65  NVYYFGQEGLH-NVLVIDLL--GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS 121

Query: 424 PPIAHNYLNSSAVHLTEDYA-----AKLSD------LSFWNEIAMAEMAATSKKLSSAPS 472
             + +  +      +    +       + D                          +A  
Sbjct: 122 --LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARY 179

Query: 473 ASLE----------SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 522
            S+            ++   G +    + G LP+     +      + +      ++   
Sbjct: 180 MSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERI-----GEKKQS 234

Query: 523 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI---TGITPDG 571
             L        E   + +        +  P    +  +  ++      T D 
Sbjct: 235 TPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDE 286

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (225), Expect = 1e-20
 Identities = 43/269 (15%), Positives = 81/269 (30%), Gaps = 31/269 (11%)

Query: 301 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 359
           D+  ++G    G V      + G   A+  +         K+       +   L    H 
Sbjct: 8   DYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIA--KDEVAHTVTESRVLQNTRHP 65

Query: 360 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 419
               L    +  +      V EYA  G LF H+                   +   LE++
Sbjct: 66  FLTALKYAFQTHDRL--CFVMEYANGGELFFHLS--RERVFTEERARFYGAEIVSALEYL 121

Query: 420 HQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT---------SKKLSSA 470
           H     + +  +    + L +D   K++D     E                  + ++   
Sbjct: 122 HS--RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLED 179

Query: 471 PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 530
                  + +  GV+++EM+ GRLP+   N   E      L       + + P       
Sbjct: 180 NDYGRAVDWWGLGVVMYEMMCGRLPF--YNQDHERLFELILMEEIRFPRTLSPEAK---- 233

Query: 531 EQLETLGELIKSCVRADPEKRPTMRDIAA 559
                   L+   ++ DP++R       A
Sbjct: 234 -------SLLAGLLKKDPKQRLGGGPSDA 255

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (220), Expect = 3e-20
 Identities = 38/282 (13%), Positives = 83/282 (29%), Gaps = 37/282 (13%)

Query: 304 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 362
             IG    GTV+K         +A+  V +       + +     ++I  L ++ HKN V
Sbjct: 8   EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD---EGVPSSALREICLLKELKHKNIV 64

Query: 363 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 422
            L      +      +VFE+                  +          +   L   H  
Sbjct: 65  RLHDVLHSD--KKLTLVFEFCDQDLKKYFDSCNGDLDPEI--VKSFLFQLLKGLGFCHSR 120

Query: 423 NPPIAHNYLNSSAVHLTEDYAAKLSDLSF----------WNEIAMAEMAATSKKLSSAPS 472
           N  + H  L    + +  +   KL++             ++   +         L  A  
Sbjct: 121 N--VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKL 178

Query: 473 ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ 532
            S   ++++ G +  E+     P    N   +     +     P ++         D + 
Sbjct: 179 YSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKP 238

Query: 533 L-----------------ETLGELIKSCVRADPEKRPTMRDI 557
                              T  +L+++ ++ +P +R +  + 
Sbjct: 239 YPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEA 280

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 86.0 bits (212), Expect = 5e-19
 Identities = 39/297 (13%), Positives = 91/297 (30%), Gaps = 54/297 (18%)

Query: 300 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 356
           +D+     +G      V++   ++N  ++ V  +     K        + +++I  L  +
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKK--------KIKREIKILENL 86

Query: 357 N-HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYC 415
               N + L    ++    T  +VFE+  N    +         L           +   
Sbjct: 87  RGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ-----TLTDYDIRFYMYEILKA 141

Query: 416 LEHMHQLNPPIAHNYLNSSAVHLTED----------YAAKLSDLSFWNEIAMAEMAATSK 465
           L++ H +   I H  +    V +  +           A        +N    +      +
Sbjct: 142 LDYCHSMG--IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPE 199

Query: 466 KLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY-LSGVQPLQQFVDPT 524
            L          ++++ G +L  M+  + P+   + + +       + G + L  ++D  
Sbjct: 200 LLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKY 259

Query: 525 LSSFDEEQLETLG------------------------ELIKSCVRADPEKRPTMRDI 557
               D    + LG                        + +   +R D + R T R+ 
Sbjct: 260 NIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREA 316

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (203), Expect = 9e-18
 Identities = 47/305 (15%), Positives = 99/305 (32%), Gaps = 43/305 (14%)

Query: 288 PKLKRSELEAACEDFSN------VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPK 340
           P   R EL     +          +GS   G+V        G+ +AV  +S         
Sbjct: 2   PTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSI--- 58

Query: 341 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRMMVFEYAPNGTLFEHIHIKES 397
               +  +++  L  + H+N + L+           F  + +  +     L    +I + 
Sbjct: 59  IHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLN---NIVKC 115

Query: 398 EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM 457
           + L       +   +   L+++H  +  I H  L  S + + ED   K+ D         
Sbjct: 116 QKLTDDHVQFLIYQILRGLKYIHSAD--IIHRDLKPSNLAVNEDCELKILDFGLARHTDD 173

Query: 458 AEMAATSKKLSSAP-------SASLESNVYNFGVLLFEMVTGRLPYLVDN---------- 500
                 + +   AP         +   ++++ G ++ E++TGR  +   +          
Sbjct: 174 EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 233

Query: 501 --GSLEDWAADYLSG------VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP 552
             G+        +S       +Q L Q      ++          +L++  +  D +KR 
Sbjct: 234 LVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRI 293

Query: 553 TMRDI 557
           T    
Sbjct: 294 TAAQA 298

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.8 bits (201), Expect = 2e-17
 Identities = 42/262 (16%), Positives = 82/262 (31%), Gaps = 28/262 (10%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
            +G+   G V       +G   A+  +         K +E     +   L  VN    V 
Sbjct: 48  TLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVK-LKQIE-HTLNEKRILQAVNFPFLVK 105

Query: 364 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 423
           L    ++       MV EY   G +F H+                A  +    E++H L+
Sbjct: 106 LEFSFKD--NSNLYMVMEYVAGGEMFSHLR--RIGRFSEPHARFYAAQIVLTFEYLHSLD 161

Query: 424 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP------SASLES 477
             + +  L    + + +    +++D  F   +            + AP        +   
Sbjct: 162 --LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAV 219

Query: 478 NVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLG 537
           + +  GVL++EM  G  P+  D                 + + +      F       L 
Sbjct: 220 DWWALGVLIYEMAAGYPPFFADQ-------------PIQIYEKIVSGKVRFPSHFSSDLK 266

Query: 538 ELIKSCVRADPEKRPTMRDIAA 559
           +L+++ ++ D  KR        
Sbjct: 267 DLLRNLLQVDLTKRFGNLKNGV 288

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (187), Expect = 1e-15
 Identities = 44/295 (14%), Positives = 90/295 (30%), Gaps = 52/295 (17%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 363
            IGS   G V           +A+  +S             +  +++  +  VNHKN ++
Sbjct: 24  PIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQ---THAKRAYRELVLMKCVNHKNIIS 80

Query: 364 LIGFCEE----EEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 419
           L+         EE     +V E                  LD      +   M   ++H+
Sbjct: 81  LLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQM-----ELDHERMSYLLYQMLCGIKHL 135

Query: 420 HQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA--------ATSKKLSSAP 471
           H     I H  L  S + +  D   K+ D         + M           + ++    
Sbjct: 136 HS--AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGM 193

Query: 472 SASLESNVYNFGVLLFEMVTGRLPYLVDN--------------------GSLEDWAADYL 511
                 ++++ G ++ EMV  ++ +   +                      L+    +Y+
Sbjct: 194 GYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYV 253

Query: 512 SG---------VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 557
                       +     + P  S  ++ +     +L+   +  DP KR ++ D 
Sbjct: 254 ENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDA 308

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.8 bits (172), Expect = 8e-14
 Identities = 40/307 (13%), Positives = 94/307 (30%), Gaps = 55/307 (17%)

Query: 305 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKID-----TLSKVNH 358
            +G     TV+    + N   +A+  V            E++  ++++         +  
Sbjct: 20  KLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGA 79

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTL-FEHIHIKESEHLDWGMRLRIAMGMAYCLE 417
            + + L+     + P    +V  +   G      I   E   +      +I+  +   L+
Sbjct: 80  NHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLD 139

Query: 418 HMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP 471
           +MH+    I H      N L             K++DL            +   +   +P
Sbjct: 140 YMHR-RCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSP 198

Query: 472 ------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL-------- 517
                      +++++   L+FE++TG   +  D G       D+++ +  L        
Sbjct: 199 EVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYL 258

Query: 518 ---------------------------QQFVDPTLSSFDEEQLETLGELIKSCVRADPEK 550
                                       + V      F +++ + + + +   ++ DP K
Sbjct: 259 LRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRK 318

Query: 551 RPTMRDI 557
           R     +
Sbjct: 319 RADAGGL 325

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 60.6 bits (146), Expect = 3e-11
 Identities = 22/157 (14%), Positives = 44/157 (28%), Gaps = 15/157 (9%)

Query: 304 NVIGSSPIGTVYKGTLSNGVEIAV-----ASVSVASAKDWPKNLEVQFRKKIDTLSKVNH 358
            ++G      V+        E  V        S    K+     ++ F       ++   
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 359 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH 418
           +    L G            V+ +  N  L E I  KE   +       +   +   +  
Sbjct: 66  RALQKLQGLAV-------PKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAK 118

Query: 419 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI 455
            +     I H  L+   V ++ +    + D     E+
Sbjct: 119 FYH--RGIVHGDLSQYNVLVS-EEGIWIIDFPQSVEV 152

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 25  THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND 84
            ++  + LRNN   G +P+G  +L+ L  L+   NN  G +P   G      +    NN 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302

Query: 85  F 85
            
Sbjct: 303 C 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 13  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF--SGPLP 66
           + GTL   +  L  + S+ +  N+  G IP+  G L+  +V  + +N      PLP
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 55  DFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES 102
           D  +N   G LP  L     L  L +  N+  G + P+   LQ    S
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVS 296

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 6e-09
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 1   MCVMCRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG 57
                +NL  L L     +    + SLT ++ +   NN  S         L  +  L  G
Sbjct: 302 PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 58  HNNFSGPLPNDLGINHSLTILLLDNN 83
           HN  S   P  L     +T L L++ 
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 27/133 (20%)

Query: 2   CVMCRNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 58
             +  NL +L L G        + SLT++  + L NN  S + P     L +L  L  G 
Sbjct: 215 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 272

Query: 59  NNFSGPLP--------------------NDLGINHSLTILLLDNNDFVGSLSPEIYKLQV 98
           N  S   P                    + +    +LT L L  N+        +  L  
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 330

Query: 99  LSESQVDEGQLSS 111
           L        ++S 
Sbjct: 331 LQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 24 LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP 66
          L  + ++         I  +G   L  L  ++F +N  +   P
Sbjct: 43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP 83

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 15/61 (24%), Positives = 20/61 (32%)

Query: 25 THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND 84
               + L+NN  + I    F  L+ L  L   +N  S   P        L  L L  N 
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 85 F 85
           
Sbjct: 91 L 91

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 2/71 (2%)

Query: 41  IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 100
           +P+      +  +LD  +N  +     D     +L  L+L NN            L  L 
Sbjct: 25  VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 101 ESQVDEGQLSS 111
              + + QL  
Sbjct: 83  RLYLSKNQLKE 93

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 34  NNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF 85
           NN+ + +       LE L+ L    N+    +P     +H L    L  N +
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 1   MCVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 60
                + L     + +    + +L+ + ++   +N  S I P     L  L  +   +N 
Sbjct: 149 GLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206

Query: 61  FSGPLPNDLGINHSLTILLLDN 82
            S   P  L    +L I+ L N
Sbjct: 207 ISDVSP--LANTSNLFIVTLTN 226

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 27 IKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSG----PLPNDLGINHSLTILLLD 81
          I+S+ ++    S     E    L++ +V+       +      + + L +N +L  L L 
Sbjct: 4  IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 82 NNDFVGSLSPEIYKL 96
          +N+        + + 
Sbjct: 64 SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 9/106 (8%)

Query: 1   MCVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDF 56
           + +    L+D  +        Q  + ++ + L +   S      +         L  LD 
Sbjct: 345 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 404

Query: 57  GHNNFSGP----LPNDLGINHS-LTILLLDNNDFVGSLSPEIYKLQ 97
            +N         L   +      L  L+L +  +   +   +  L+
Sbjct: 405 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 6e-04
 Identities = 11/94 (11%), Positives = 26/94 (27%), Gaps = 15/94 (15%)

Query: 7  NLKDLCLEGT------LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDF 56
          +++ L ++         A  +  L   + + L +   +      I         L  L+ 
Sbjct: 3  DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 57 GHNNFSGPLPNDLG-----INHSLTILLLDNNDF 85
            N       + +       +  +  L L N   
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 1   MCVMCRNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 59
           +C +  +L++L +      E+      ++ +I   N  + + PE     + L+ L   +N
Sbjct: 279 LCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYN 334

Query: 60  NFSGPLPNDLGINHSLTILLLDN 82
                 P+      S+  L +++
Sbjct: 335 PLRE-FPDIPE---SVEDLRMNS 353

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	592
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.98
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.58
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.47
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.35
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.24
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.23
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.14
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.13
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.09
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.05
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.98
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.93
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.91
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.82
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.76
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.75
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.73
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.64
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.64
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.49
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.38
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.38
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.38
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.12
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.08
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.89
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.83
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.79
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.77
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.69
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.61
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.58
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.46
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.24
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.78
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.0
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	95.67
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.48
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	94.83
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	91.73
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	89.11

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-50  Score=399.77  Aligned_cols=251  Identities=24%  Similarity=0.415  Sum_probs=193.6

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      .+.+.||+|+||+||+|++++  .||||++......   ....+.|.+|+++|++++|||||+++|++.+.   ..++||
T Consensus        11 ~~~~~lG~G~fg~Vy~~~~~~--~vAvK~~~~~~~~---~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~---~~~lv~   82 (276)
T d1uwha_          11 TVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPT---PQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP---QLAIVT   82 (276)
T ss_dssp             CCCSEEEECSSCEEEEEESSS--EEEEEECCCSSCC---TTHHHHHHHHHHHHTTCCCTTBCCEEEEECSS---SCEEEE
T ss_pred             EEEEEEeeCCCcEEEEEEECC--EEEEEEEEcccCC---HHHHHHHHHHHHHHHhCCCCCEeeeeEEEecc---EEEEEE
Confidence            456889999999999998753  6999988654322   33567899999999999999999999998654   358999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh-
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~-  459 (592)
                      |||++|+|.++++.. ...++|..++.|+.|+++||+|||+++  ||||||||+|||+++++.+||+|||+++...... 
T Consensus        83 Ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~gl~yLH~~~--ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~  159 (276)
T d1uwha_          83 QWCEGSSLYHHLHII-ETKFEMIKLIDIARQTAQGMDYLHAKS--IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSG  159 (276)
T ss_dssp             ECCCEEEHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEETTSSEEECCCCCSCC------
T ss_pred             ecCCCCCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHhcCC--EeccccCHHHEEEcCCCCEEEccccceeeccccCC
Confidence            999999999999643 356999999999999999999999998  9999999999999999999999999998664221 


Q ss_pred             ----------hhhcccccCC---CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 007711          460 ----------MAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  526 (592)
Q Consensus       460 ----------~~~~~~~~~~---~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (592)
                                ..+.+||...   ...++.++|||||||++|||+||+.||...  ...+.+........     ..+...
T Consensus       160 ~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~--~~~~~~~~~~~~~~-----~~p~~~  232 (276)
T d1uwha_         160 SHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNI--NNRDQIIFMVGRGY-----LSPDLS  232 (276)
T ss_dssp             ------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTC--CCHHHHHHHHHHTS-----CCCCGG
T ss_pred             cccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCC--ChHHHHHHHHhcCC-----CCCcch
Confidence                      1223333221   123678999999999999999999999532  22222222222211     122222


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCC
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  569 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~  569 (592)
                      ..+..++.++.+++.+||+.||++||||+||++.|+.+.+..|
T Consensus       233 ~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~~P  275 (276)
T d1uwha_         233 KVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLP  275 (276)
T ss_dssp             GSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred             hccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHcCC
Confidence            2344456789999999999999999999999999999976544

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-49  Score=389.24  Aligned_cols=243  Identities=22%  Similarity=0.363  Sum_probs=190.3

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ++.+.||+|+||.||+|++.++..||||++.....      ..++|.+|++++++++|||||+++|+|...+  ..++||
T Consensus         8 ~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~------~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~--~~~lv~   79 (263)
T d1sm2a_           8 TFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM------SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA--PICLVF   79 (263)
T ss_dssp             EEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSS------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--SCEEEE
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcC------cHHHHHHHHHHHHhcCCCCcccccceeccCC--ceEEEE
Confidence            35678999999999999998889999998854321      2467999999999999999999999998877  569999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      |||++|+|.+++.. ....++|..+++|+.|+|.||+|||+++  |+||||||+|||+|+++.+||+|||+++.......
T Consensus        80 E~~~~g~L~~~l~~-~~~~~~~~~~~~i~~qia~gl~~lH~~~--iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~  156 (263)
T d1sm2a_          80 EFMEHGCLSDYLRT-QRGLFAAETLLGMCLDVCEGMAYLEEAC--VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY  156 (263)
T ss_dssp             ECCTTCBHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCTTCSGGGEEECGGGCEEECSCC----------
T ss_pred             EecCCCcHHHHhhc-cccCCCHHHHHHHHHHHHHHHHhhhccc--eeecccchhheeecCCCCeEecccchheeccCCCc
Confidence            99999999998864 3456899999999999999999999998  99999999999999999999999999987643221


Q ss_pred             ----------hhcccccCCCCCCCCCCcchhhHHHHHHHHhC-CCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          461 ----------AATSKKLSSAPSASLESNVYNFGVLLFEMVTG-RLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       461 ----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG-~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                                .+.+||......++.|+|||||||++|||+|+ +.||  ......+.......+...          ..+
T Consensus       157 ~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~--~~~~~~~~~~~i~~~~~~----------~~p  224 (263)
T d1sm2a_         157 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPY--ENRSNSEVVEDISTGFRL----------YKP  224 (263)
T ss_dssp             --------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTT--CSCCHHHHHHHHHHTCCC----------CCC
T ss_pred             eeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCC--CCCCHHHHHHHHHhcCCC----------CCc
Confidence                      12333333344589999999999999999995 5555  333444444444333111          112


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      ..++.++.+++.+||+.||++||||+||++.|+++.+
T Consensus       225 ~~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~e  261 (263)
T d1sm2a_         225 RLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAE  261 (263)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence            3344679999999999999999999999999999863

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-49  Score=395.87  Aligned_cols=244  Identities=18%  Similarity=0.327  Sum_probs=185.8

Q ss_pred             hcccCcCCCeEEEEEEeCC-C---cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          303 SNVIGSSPIGTVYKGTLSN-G---VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       303 ~~~lG~G~~g~Vy~g~~~~-~---~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      .+.||+|+||+||+|++.. +   ..||||.+....    .....++|.+|+++|++++|||||+++|+|...+  ..++
T Consensus        31 ~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~--~~~i  104 (299)
T d1jpaa_          31 EQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY----TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKST--PVMI  104 (299)
T ss_dssp             EEEEEECSSSEEEEEEECC---CCEEEEEEECCSSC----CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--SCEE
T ss_pred             eeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECccc----CHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC--EEEE
Confidence            4689999999999999742 2   246777654322    2345678999999999999999999999998877  5699


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |||||++|+|.+++.. ....++|..+++|+.|||+||+|||+++  |+||||||+|||++.++++||+|||+++.....
T Consensus       105 v~Ey~~~g~L~~~~~~-~~~~l~~~~~~~i~~qia~gl~yLH~~~--iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~  181 (299)
T d1jpaa_         105 ITEFMENGSLDSFLRQ-NDGQFTVIQLVGMLRGIAAGMKYLADMN--YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDD  181 (299)
T ss_dssp             EEECCTTEEHHHHHHT-TTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred             EEEecCCCcceeeecc-ccCCCCHHHHHHHHHHHHHHHHHHhhCC--CccCccccceEEECCCCcEEECCcccceEccCC
Confidence            9999999999998863 3456899999999999999999999998  999999999999999999999999999876432


Q ss_pred             hhh--------hcccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          459 EMA--------ATSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       459 ~~~--------~~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ...        ...+..+++|      .++.++|||||||++|||+| |+.||.  +....+.......+..        
T Consensus       182 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~--~~~~~~~~~~i~~~~~--------  251 (299)
T d1jpaa_         182 TSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYW--DMTNQDVINAIEQDYR--------  251 (299)
T ss_dssp             --------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT--TCCHHHHHHHHHTTCC--------
T ss_pred             CCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCC--CCCHHHHHHHHHcCCC--------
Confidence            110        1112234444      47889999999999999998 899994  3344444444333211        


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                        ...+..++.++.+++.+||+.||++||||.||++.|+++++.
T Consensus       252 --~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~  293 (299)
T d1jpaa_         252 --LPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRN  293 (299)
T ss_dssp             --CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             --CCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcC
Confidence              112334556799999999999999999999999999998753

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-49  Score=395.02  Aligned_cols=259  Identities=20%  Similarity=0.308  Sum_probs=203.1

Q ss_pred             CCCCHHHHHHHHhhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeE
Q 007711          288 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIG  366 (592)
Q Consensus       288 ~~~~~~el~~~~~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g  366 (592)
                      |.+..+|+......+.+.||+|+||+||+|++. ++..||||++.....      ..++|.+|+++|++++|||||+++|
T Consensus         7 p~~~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~------~~~~~~~E~~il~~l~HpnIv~~~~   80 (287)
T d1opja_           7 PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM------EVEEFLKEAAVMKEIKHPNLVQLLG   80 (287)
T ss_dssp             TTCCTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS------CHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CCCcccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc------hHHHHHHHHHHHHhCCCCCEecCCc
Confidence            444444555444556789999999999999975 588999998753321      2467999999999999999999999


Q ss_pred             EEecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEE
Q 007711          367 FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL  446 (592)
Q Consensus       367 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki  446 (592)
                      +|.+.+  ..++|||||++|+|.+++.......++|..++.|+.|++.||+|||+++  |+||||||+|||+++++.+||
T Consensus        81 ~~~~~~--~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~--iiHrDlKp~NILl~~~~~~Kl  156 (287)
T d1opja_          81 VCTREP--PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKV  156 (287)
T ss_dssp             EECSSS--SCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECGGGCEEE
T ss_pred             cEeeCC--eeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCC--cccCccccCeEEECCCCcEEE
Confidence            998877  5699999999999999997666678999999999999999999999998  999999999999999999999


Q ss_pred             ecCCcchhhhhhhh----------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC
Q 007711          447 SDLSFWNEIAMAEM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP  516 (592)
Q Consensus       447 ~DfGla~~~~~~~~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~  516 (592)
                      +|||+++.......          .+.+|+......++.++|||||||++|||+||+.|+.. ..+..+.......+ ..
T Consensus       157 ~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~-~~~~~~~~~~i~~~-~~  234 (287)
T d1opja_         157 ADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP-GIDLSQVYELLEKD-YR  234 (287)
T ss_dssp             CCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSST-TCCHHHHHHHHHTT-CC
T ss_pred             ccccceeecCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCC-cchHHHHHHHHhcC-CC
Confidence            99999987643211          12223322223478999999999999999997777632 23333333222221 11


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          517 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                               ...+..++.++.+++.+||+.||++||||+||++.|+.+...
T Consensus       235 ---------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~~  276 (287)
T d1opja_         235 ---------MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  276 (287)
T ss_dssp             ---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTSS
T ss_pred             ---------CCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence                     122334456799999999999999999999999999988654

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-49  Score=393.44  Aligned_cols=246  Identities=21%  Similarity=0.330  Sum_probs=195.1

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ...+.+.||+|+||.||+|+++++..||||++.....      ..++|.+|+++|++++|||||+++|+|.+.   ..++
T Consensus        14 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~------~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~---~~~i   84 (272)
T d1qpca_          14 TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM------SPDAFLAEANLMKQLQHQRLVRLYAVVTQE---PIYI   84 (272)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS---SCEE
T ss_pred             HeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcC------CHHHHHHHHHHHHhCCCCCEeEEEeeeccC---CeEE
Confidence            3445688999999999999998889999998853321      246799999999999999999999998654   3589


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |||||++|+|.+++.......++|..+++|+.||++||+|||+++  |+||||||+||||++++.+||+|||+++.....
T Consensus        85 v~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~--ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~  162 (272)
T d1qpca_          85 ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN--YIHRDLRAANILVSDTLSCKIADFGLARLIEDN  162 (272)
T ss_dssp             EEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTSCEEECCCTTCEECSSS
T ss_pred             EEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCccchhheeeecccceeeccccceEEccCC
Confidence            999999999999887655556999999999999999999999998  999999999999999999999999999876432


Q ss_pred             hh----hhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          459 EM----AATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       459 ~~----~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      ..    ....+..+++||      ++.++|||||||++|||+||..|+. ......+.......+..          ...
T Consensus       163 ~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~-~~~~~~~~~~~i~~~~~----------~~~  231 (272)
T d1qpca_         163 EYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY-PGMTNPEVIQNLERGYR----------MVR  231 (272)
T ss_dssp             CEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSS-TTCCHHHHHHHHHTTCC----------CCC
T ss_pred             ccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCC-CCCCHHHHHHHHHhcCC----------CCC
Confidence            21    111123345554      6889999999999999999665553 22333344333332211          112


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      +..+++++.+++.+||+.||++||||+||++.|+++..
T Consensus       232 p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         232 PDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhh
Confidence            23345679999999999999999999999999998764

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-48  Score=377.79  Aligned_cols=240  Identities=20%  Similarity=0.348  Sum_probs=194.0

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      |.+.||+|+||+||+|+++++..||||.+.....      ..++|.+|++++++++|||||+++|+|.+.+  ..++|||
T Consensus         8 ~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~------~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~--~~~iv~E   79 (258)
T d1k2pa_           8 FLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM------SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR--PIFIITE   79 (258)
T ss_dssp             CCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS------CHHHHHHHHHHHHTCCCTTBCCEEEEECCSS--SEEEEEE
T ss_pred             EeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC------CHHHHHHHHHHHHhcCCCceeeEEEEEeeCC--ceEEEEE
Confidence            5688999999999999998899999999864332      2467999999999999999999999998877  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA  461 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~~  461 (592)
                      |+++|+|.+++... ...+++..+.+++.|+++||+|||+++  |+||||||+|||+++++.+||+|||+++........
T Consensus        80 y~~~g~l~~~~~~~-~~~~~~~~~~~i~~qi~~gl~~LH~~~--iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~  156 (258)
T d1k2pa_          80 YMANGCLLNYLREM-RHRFQTQQLLEMCKDVCEAMEYLESKQ--FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYT  156 (258)
T ss_dssp             CCTTEEHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHHTT--BCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCC
T ss_pred             ccCCCcHHHhhhcc-ccCCcHHHHHHHHHHHHHHHHHHhhcC--cccccccceeEEEcCCCcEEECcchhheeccCCCce
Confidence            99999999887543 356889999999999999999999998  999999999999999999999999999865422211


Q ss_pred             ----hcccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          462 ----ATSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       462 ----~~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                          ...+..+++|      .++.|+|||||||++|||+| |+.||.  .....+.......+..          ...+.
T Consensus       157 ~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~--~~~~~~~~~~i~~~~~----------~~~p~  224 (258)
T d1k2pa_         157 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYE--RFTNSETAEHIAQGLR----------LYRPH  224 (258)
T ss_dssp             CCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT--TSCHHHHHHHHHTTCC----------CCCCT
T ss_pred             eecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCC--CCCHHHHHHHHHhCCC----------CCCcc
Confidence                1112234444      47899999999999999999 899994  3334444444433211          11233


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                      .+++++.+++.+||+.||++||||+|+++.|.+|
T Consensus       225 ~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~di  258 (258)
T d1k2pa_         225 LASEKVYTIMYSCWHEKADERPTFKILLSNILDV  258 (258)
T ss_dssp             TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHCC
T ss_pred             cccHHHHHHHHHHccCCHhHCcCHHHHHHHhhCC
Confidence            3446799999999999999999999999998764

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-48  Score=381.90  Aligned_cols=239  Identities=21%  Similarity=0.297  Sum_probs=190.5

Q ss_pred             ccCcCCCeEEEEEEeC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          305 VIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       305 ~lG~G~~g~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +||+|+||.||+|.++   ++..||||++....    .....++|.+|+++|++++|||||+++|+|..+   ..++|||
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~----~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~---~~~lvmE   88 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT----EKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE---ALMLVME   88 (285)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSC----CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESS---SEEEEEE
T ss_pred             EEecccCeEEEEEEEecCCCcEEEEEEEEChhc----CHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccC---eEEEEEE
Confidence            4999999999999864   35579999885432    234567899999999999999999999999754   4689999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhhh
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA  461 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~~  461 (592)
                      ||++|+|.+++.. ....+++..+.+|+.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++........
T Consensus        89 ~~~~g~L~~~l~~-~~~~l~~~~~~~i~~qi~~gL~ylH~~~--iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~  165 (285)
T d1u59a_          89 MAGGGPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEEKN--FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSY  165 (285)
T ss_dssp             CCTTEEHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCE
T ss_pred             eCCCCcHHHHhhc-cccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCcCchhheeeccCCceeeccchhhhcccccccc
Confidence            9999999998753 3457899999999999999999999998  999999999999999999999999999876432211


Q ss_pred             ------hcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          462 ------ATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       462 ------~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                            ...+..+++||      ++.++|||||||++|||+| |+.||...  ...+.......+. .         ...
T Consensus       166 ~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~--~~~~~~~~i~~~~-~---------~~~  233 (285)
T d1u59a_         166 YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM--KGPEVMAFIEQGK-R---------MEC  233 (285)
T ss_dssp             ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC--CTHHHHHHHHTTC-C---------CCC
T ss_pred             cccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCC-C---------CCC
Confidence                  11123345554      6889999999999999998 99999533  3334333333221 1         122


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      +..++.++.+++.+||+.||++||||.+|++.|+.+.
T Consensus       234 p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~  270 (285)
T d1u59a_         234 PPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACY  270 (285)
T ss_dssp             CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            3445568999999999999999999999999998764

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-48  Score=384.85  Aligned_cols=253  Identities=21%  Similarity=0.313  Sum_probs=198.3

Q ss_pred             hhhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ..+.+.||+|+||+||+|+++++..||||++.....      ..++|.+|+.+|++++|+|||+++|+|.+.   ..++|
T Consensus        19 ~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~------~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~---~~~lv   89 (285)
T d1fmka3          19 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM------SPEAFLQEAQVMKKLRHEKLVQLYAVVSEE---PIYIV   89 (285)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS---SCEEE
T ss_pred             EEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccC------CHHHHHHHHHHHHhcccCCEeEEEEEEecC---CeEEE
Confidence            445689999999999999998888999999854322      246799999999999999999999998654   35899


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      ||||++|+|.+++.......++|..++.|+.||+.||+|||+.+  |+||||||+|||||+++++||+|||+++......
T Consensus        90 ~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~--ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~  167 (285)
T d1fmka3          90 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNE  167 (285)
T ss_dssp             ECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECGGGCEEECCCCTTC------
T ss_pred             EEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhh--eecccccceEEEECCCCcEEEcccchhhhccCCC
Confidence            99999999999887655567999999999999999999999998  9999999999999999999999999998764322


Q ss_pred             h----------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          460 M----------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       460 ~----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      .          .+.+|+......++.++|||||||++|||+||..|+.. .....+.......+..          ...+
T Consensus       168 ~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~-~~~~~~~~~~i~~~~~----------~~~~  236 (285)
T d1fmka3         168 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP-GMVNREVLDQVERGYR----------MPCP  236 (285)
T ss_dssp             --------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST-TCCHHHHHHHHHTTCC----------CCCC
T ss_pred             ceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCC-CCCHHHHHHHHHhcCC----------CCCC
Confidence            1          12222322333478999999999999999997666632 3334444443333211          1123


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCCCCCC
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIP  574 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~~~~p  574 (592)
                      ..+++++.+++.+||+.||++||+|++|++.|++........-.|
T Consensus       237 ~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~~p~~~p  281 (285)
T d1fmka3         237 PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQP  281 (285)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCCCCC
T ss_pred             cccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcCCCCCCCC
Confidence            345568999999999999999999999999999988776554444

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-47  Score=378.21  Aligned_cols=240  Identities=23%  Similarity=0.322  Sum_probs=189.2

Q ss_pred             cccCcCCCeEEEEEEeCC---CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          304 NVIGSSPIGTVYKGTLSN---GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~---~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.||+|+||+||+|.+++   ++.||||++......   ....++|.+|+++|++++|||||+++|+|..+   ..++||
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~---~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~---~~~lvm   86 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAND---PALKDELLAEANVMQQLDNPYIVRMIGICEAE---SWMLVM   86 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC--------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS---SEEEEE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCC---HHHHHHHHHHHHHHHhCCCCCCceEEEEeccC---CEEEEE
Confidence            469999999999998743   467999988543321   34467899999999999999999999999654   358999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      |||++|+|.++++.  ...++|..+++|+.||+.||+|||+++  |+||||||+|||++.++.+||+|||+++.......
T Consensus        87 E~~~~g~L~~~l~~--~~~l~~~~~~~i~~qi~~gl~ylH~~~--iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~  162 (277)
T d1xbba_          87 EMAELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLEESN--FVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN  162 (277)
T ss_dssp             ECCTTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEEETTEEEECCCTTCEECCTTCS
T ss_pred             EcCCCCcHHHHHhh--ccCCCHHHHHHHHHHHHHHHhhHHhCC--cccCCCcchhhcccccCcccccchhhhhhcccccc
Confidence            99999999999864  356999999999999999999999998  99999999999999999999999999986532211


Q ss_pred             ------hhcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          461 ------AATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       461 ------~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                            ....+..|++||      ++.++|||||||++|||+| |+.||.  +....+.......+. .         ..
T Consensus       163 ~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~--~~~~~~~~~~i~~~~-~---------~~  230 (277)
T d1xbba_         163 YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYR--GMKGSEVTAMLEKGE-R---------MG  230 (277)
T ss_dssp             EEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSST--TCCHHHHHHHHHTTC-C---------CC
T ss_pred             ccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCC--CCCHHHHHHHHHcCC-C---------CC
Confidence                  111223455555      6889999999999999998 899994  333344333333221 1         12


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      .+..++.++.+++.+||+.||++||||++|++.|+...
T Consensus       231 ~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~  268 (277)
T d1xbba_         231 CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY  268 (277)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHH
Confidence            23445568999999999999999999999999998763

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-47  Score=381.12  Aligned_cols=247  Identities=20%  Similarity=0.312  Sum_probs=190.3

Q ss_pred             hhhcccCcCCCeEEEEEEeCCC-----cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcc
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNG-----VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~-----~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  375 (592)
                      .+.++||+|+||.||+|.+++.     ..||||.+....    ......+|.+|++++++++|||||+++|+|...+  .
T Consensus        10 ~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~----~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~--~   83 (283)
T d1mqba_          10 TRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY----TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK--P   83 (283)
T ss_dssp             EEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--S
T ss_pred             EeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECccc----ChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCC--c
Confidence            3468899999999999997542     368999875322    2344567999999999999999999999998877  5


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++|||||.+|++.+++.. ....++|..+++++.|++.||+|||+++  |+||||||+||||+.++.+||+|||+++..
T Consensus        84 ~~~v~e~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~i~~gl~~lH~~~--iiHrDlKp~NILl~~~~~~Kl~DFGla~~~  160 (283)
T d1mqba_          84 MMIITEYMENGALDKFLRE-KDGEFSVLQLVGMLRGIAAGMKYLANMN--YVHRDLAARNILVNSNLVCKVSDFGLSRVL  160 (283)
T ss_dssp             EEEEEECCTTEEHHHHHHH-TTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred             eEEEEEecccCcchhhhhc-ccccccHHHHHHHHHHHHHhhhhccccc--cccCccccceEEECCCCeEEEcccchhhcc
Confidence            7999999999999887753 4457999999999999999999999998  999999999999999999999999999876


Q ss_pred             hhhh------------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          456 AMAE------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       456 ~~~~------------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ....            ..+.+||......++.++|||||||++|||+||..|+.. .....+.......+.         
T Consensus       161 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~-~~~~~~~~~~i~~~~---------  230 (283)
T d1mqba_         161 EDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYW-ELSNHEVMKAINDGF---------  230 (283)
T ss_dssp             -------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TCCHHHHHHHHHTTC---------
T ss_pred             cCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccc-cCCHHHHHHHHhccC---------
Confidence            4321            112333333334478999999999999999997666532 333444443333221         


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                       ....+..++.++.+++.+||+.||++||||.||++.|+++.+.
T Consensus       231 -~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~  273 (283)
T d1mqba_         231 -RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA  273 (283)
T ss_dssp             -CCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             -CCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhC
Confidence             1122334556799999999999999999999999999998764

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-48  Score=380.38  Aligned_cols=242  Identities=25%  Similarity=0.392  Sum_probs=187.0

Q ss_pred             hhhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      ++.+.||+|+||.||+|++ .|..||||+++...       ..++|.+|++++++++|||||+++|+|.+... ..++||
T Consensus        10 ~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~~-------~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~-~~~lv~   80 (262)
T d1byga_          10 KLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA-------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVT   80 (262)
T ss_dssp             EEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC---------HHHHHTHHHHTTCCCTTBCCEEEEECCC---CCEEEE
T ss_pred             EEeEEEecCCCeEEEEEEE-CCeEEEEEEECcHH-------HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCC-cEEEEE
Confidence            3568899999999999998 47889999885322       24679999999999999999999999976432 458999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+++|+|.++++......++|..+++|+.||+.||+|||+.+  |+||||||+|||++.++.+|++|||+++.......
T Consensus        81 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~--ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~  158 (262)
T d1byga_          81 EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD  158 (262)
T ss_dssp             CCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECTTSCEEECCCCC---------
T ss_pred             eccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCc--eeccccchHhheecCCCCEeecccccceecCCCCc
Confidence            9999999999997554456899999999999999999999998  99999999999999999999999999997654433


Q ss_pred             hhcccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          461 AATSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       461 ~~~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                      ....+..+++|      .++.++|||||||++|||+| |+.||...  ...+.......+.          ...++..++
T Consensus       159 ~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~--~~~~~~~~i~~~~----------~~~~~~~~~  226 (262)
T d1byga_         159 TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVVPRVEKGY----------KMDAPDGCP  226 (262)
T ss_dssp             ---CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--CGGGHHHHHTTTC----------CCCCCTTCC
T ss_pred             cccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHcCC----------CCCCCccCC
Confidence            33333344444      47899999999999999999 78887432  3333333332221          112233445


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 007711          534 ETLGELIKSCVRADPEKRPTMRDIAAILREIT  565 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~  565 (592)
                      .++.+++.+||+.||++||||.|+++.|+++.
T Consensus       227 ~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~  258 (262)
T d1byga_         227 PAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK  258 (262)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence            67999999999999999999999999999885

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-47  Score=384.35  Aligned_cols=251  Identities=22%  Similarity=0.331  Sum_probs=191.2

Q ss_pred             HHHHHHhhhhcccCcCCCeEEEEEEeCC-C-----cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeE
Q 007711          294 ELEAACEDFSNVIGSSPIGTVYKGTLSN-G-----VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIG  366 (592)
Q Consensus       294 el~~~~~~~~~~lG~G~~g~Vy~g~~~~-~-----~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g  366 (592)
                      |+.....++.+.||+|+||+||+|++.. +     ..||||.+.....    ......|.+|+.+|.++ +|||||+++|
T Consensus        33 ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~~HpnIv~l~~  108 (325)
T d1rjba_          33 EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD----SSEREALMSELKMMTQLGSHENIVNLLG  108 (325)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC----------CHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccC----HHHHHHHHHHHHHHHHhcCCCcEeEEEE
Confidence            3333344567899999999999999643 1     3588887754322    22346789999999998 8999999999


Q ss_pred             EEecCCCcceEEEEeeCCCCCchhhccccCC---------------------CCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 007711          367 FCEEEEPFTRMMVFEYAPNGTLFEHIHIKES---------------------EHLDWGMRLRIAMGMAYCLEHMHQLNPP  425 (592)
Q Consensus       367 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~---------------------~~l~~~~~~~ia~~ia~gl~yLH~~~~~  425 (592)
                      +|...+  ..++|||||++|+|.++++....                     ..++|..++.|+.|++.||+|||+++  
T Consensus       109 ~~~~~~--~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~--  184 (325)
T d1rjba_         109 ACTLSG--PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS--  184 (325)
T ss_dssp             EECSSS--SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             EEeeCC--eEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence            998877  57999999999999999975321                     35899999999999999999999998  


Q ss_pred             eEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhhh-----hcccccCCCCC------CCCCCcchhhHHHHHHHHh-CC
Q 007711          426 IAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA-----ATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GR  493 (592)
Q Consensus       426 ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~~-----~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~  493 (592)
                      |+||||||+|||++.++.+||+|||+|+........     ...+..+++||      ++.++|||||||++|||+| |+
T Consensus       185 IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~  264 (325)
T d1rjba_         185 CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGV  264 (325)
T ss_dssp             EEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSC
T ss_pred             eeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCC
Confidence            999999999999999999999999999876433211     11123455554      7899999999999999998 89


Q ss_pred             CcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 007711          494 LPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  563 (592)
Q Consensus       494 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~  563 (592)
                      .||......  +.....+.....+         +.+..+++++.+++.+||+.||++||||+||++.|..
T Consensus       265 ~Pf~~~~~~--~~~~~~~~~~~~~---------~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~  323 (325)
T d1rjba_         265 NPYPGIPVD--ANFYKLIQNGFKM---------DQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGC  323 (325)
T ss_dssp             CSSTTCCCS--HHHHHHHHTTCCC---------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCCCCCCHH--HHHHHHHhcCCCC---------CCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHhC
Confidence            999543322  2222333221111         2233455689999999999999999999999999864

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.1e-47  Score=379.99  Aligned_cols=246  Identities=21%  Similarity=0.346  Sum_probs=194.7

Q ss_pred             hhhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc
Q 007711          301 DFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  374 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  374 (592)
                      ++.+.||+|+||+||+|+++      ++..||||++....    .....++|.+|+++|++++||||++++++|...+  
T Consensus        16 ~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~----~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~--   89 (301)
T d1lufa_          16 EYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA----SADMQADFQREAALMAEFDNPNIVKLLGVCAVGK--   89 (301)
T ss_dssp             EEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC----CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--
T ss_pred             EEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhc----ChHHHHHHHHHHHHHHhcCCCCcccceeeeccCC--
Confidence            34688999999999999964      35789999875322    2345678999999999999999999999998877  


Q ss_pred             ceEEEEeeCCCCCchhhccccC----------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcC
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKE----------------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN  432 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~----------------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk  432 (592)
                      ..++||||+++|+|.++++...                      ...++|..++.|+.|++.||+|||+++  +||||||
T Consensus        90 ~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~--ivHrDlK  167 (301)
T d1lufa_          90 PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK--FVHRDLA  167 (301)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCS
T ss_pred             ceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCC--eEeeEEc
Confidence            5699999999999999886321                      235889999999999999999999998  9999999


Q ss_pred             CCCeEEcCCCceEEecCCcchhhhhhhhh-----hcccccCCCC------CCCCCCcchhhHHHHHHHHhCC-CcccCCC
Q 007711          433 SSAVHLTEDYAAKLSDLSFWNEIAMAEMA-----ATSKKLSSAP------SASLESNVYNFGVLLFEMVTGR-LPYLVDN  500 (592)
Q Consensus       433 ~~NiLl~~~~~~ki~DfGla~~~~~~~~~-----~~~~~~~~~~------~~s~ksDVwSfGvvl~El~tG~-~P~~~~~  500 (592)
                      |+|||+|.++.+||+|||+++........     ...+..+++|      .++.++|||||||++|||+||. .||.  .
T Consensus       168 p~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~--~  245 (301)
T d1lufa_         168 TRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYY--G  245 (301)
T ss_dssp             GGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT--T
T ss_pred             ccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCC--C
Confidence            99999999999999999999876433211     1111234444      4799999999999999999985 5673  3


Q ss_pred             CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          501 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      ....+.......+.          ....+..++.++.+++.+||+.||++||||.||+++|++|.+
T Consensus       246 ~~~~e~~~~v~~~~----------~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~~  301 (301)
T d1lufa_         246 MAHEEVIYYVRDGN----------ILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCE  301 (301)
T ss_dssp             SCHHHHHHHHHTTC----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC----------CCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            34444444433321          112234445679999999999999999999999999999853

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-46  Score=366.86  Aligned_cols=238  Identities=18%  Similarity=0.335  Sum_probs=193.1

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||+|+||+||+|+.. +++.||+|++......+  ....+.+.+|++++++++|||||++++++.+.+  ..++|
T Consensus         9 ~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--~~~iv   84 (263)
T d2j4za1           9 EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK--AGVEHQLRREVEIQSHLRHPNILRLYGYFHDAT--RVYLI   84 (263)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccC--hHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECC--EEEEE
Confidence            35688999999999999974 68899999986533221  223567899999999999999999999999877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      ||||++|+|.+++...  ..+++.....++.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++..... 
T Consensus        85 mEy~~~g~L~~~l~~~--~~l~e~~~~~i~~qi~~al~~lH~~~--ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~  160 (263)
T d2j4za1          85 LEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR  160 (263)
T ss_dssp             EECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCC
T ss_pred             EeecCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eeeeeeccccceecCCCCEeecccceeeecCCCc
Confidence            9999999999998643  46899999999999999999999999  999999999999999999999999999865422 


Q ss_pred             ------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 007711          459 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  532 (592)
Q Consensus       459 ------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (592)
                            +..+.+||......++.++|||||||++|||+||+.||.  ..+..+...........           ++...
T Consensus       161 ~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~--~~~~~~~~~~i~~~~~~-----------~p~~~  227 (263)
T d2j4za1         161 RTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE--ANTYQETYKRISRVEFT-----------FPDFV  227 (263)
T ss_dssp             CEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTC--CSSHHHHHHHHHTTCCC-----------CCTTS
T ss_pred             ccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCC--CCCHHHHHHHHHcCCCC-----------CCccC
Confidence                  223444555445558999999999999999999999994  34444444444333211           12233


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          533 LETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       533 ~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ++++.+++.+||+.||++|||++|+++
T Consensus       228 s~~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         228 TEGARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CHHHHHHHHHHccCCHhHCcCHHHHHc
Confidence            457899999999999999999999875

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-46  Score=369.44  Aligned_cols=244  Identities=20%  Similarity=0.261  Sum_probs=183.1

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||+|+||+||+|+. .+|..||||.+......   ....+.|.+|+++|++++|||||++++++.+......++|
T Consensus         7 ~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~---~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           7 EVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT---EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSC---HHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             EEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCC---HHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            3458899999999999996 46899999998654322   3445679999999999999999999999976433357899


Q ss_pred             EeeCCCCCchhhcccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCC---CCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          380 FEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLN---PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~---~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ||||++|+|.+++...  ....+++..+..++.|++.||+|||+.+   .+|+||||||+|||++.++.+||+|||+++.
T Consensus        84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~  163 (269)
T d2java1          84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARI  163 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHH
T ss_pred             EecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceee
Confidence            9999999999998642  3567999999999999999999999754   3599999999999999999999999999987


Q ss_pred             hhhhhh---------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          455 IAMAEM---------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       455 ~~~~~~---------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ......         .+.+||......++.++|||||||++|||+||+.||.  ..+..+.......+..  .       
T Consensus       164 ~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~--~~~~~~~~~~i~~~~~--~-------  232 (269)
T d2java1         164 LNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFT--AFSQKELAGKIREGKF--R-------  232 (269)
T ss_dssp             C-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC--CSSHHHHHHHHHHTCC--C-------
T ss_pred             cccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCC--CCCHHHHHHHHHcCCC--C-------
Confidence            643221         1223333333447899999999999999999999994  3344444444433311  1       


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       ..+...++++.+++.+||+.||++|||+.|+++
T Consensus       233 -~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         233 -RIPYRYSDELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             -CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -CCCcccCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence             112233457999999999999999999999864

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-46  Score=375.41  Aligned_cols=248  Identities=24%  Similarity=0.344  Sum_probs=190.7

Q ss_pred             hhhcccCcCCCeEEEEEEeCCC----cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          301 DFSNVIGSSPIGTVYKGTLSNG----VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~~~----~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +|.++||+|+||+||+|++.+.    ..||||.+....    .....++|.+|+++|++++|||||+++|+|...+. ..
T Consensus        30 ~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~----~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~-~~  104 (311)
T d1r0pa_          30 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT----DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SP  104 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEECC----CEEEEEEEECCCC----CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTT-EE
T ss_pred             ccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECccc----CHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCC-ce
Confidence            3467899999999999997432    357888775321    23456789999999999999999999999876442 57


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|||||++|+|.++++. ....+++..+++++.|+++||.|||+.+  |+||||||+|||+++++.+||+|||+++...
T Consensus       105 ~lv~E~~~~g~l~~~~~~-~~~~~~~~~~~~i~~qia~gL~~lH~~~--iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~  181 (311)
T d1r0pa_         105 LVVLPYMKHGDLRNFIRN-ETHNPTVKDLIGFGLQVAKGMKFLASKK--FVHRDLAARNCMLDEKFTVKVADFGLARDMY  181 (311)
T ss_dssp             EEEEECCTTCBHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECTTCCEEECSSGGGCCTT
T ss_pred             EEEEEEeecCchhhhhcc-ccccchHHHHHHHHHHHHHhhhhhcccC--cccCCccHHhEeECCCCCEEEecccchhhcc
Confidence            899999999999998864 4456789999999999999999999998  9999999999999999999999999998764


Q ss_pred             hhhhh-------hcccccCCCC------CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          457 MAEMA-------ATSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       457 ~~~~~-------~~~~~~~~~~------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      .....       ...+..+++|      .++.++||||||+++|||+||+.||... .+..++......+...       
T Consensus       182 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~-~~~~~~~~~i~~g~~~-------  253 (311)
T d1r0pa_         182 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD-VNTFDITVYLLQGRRL-------  253 (311)
T ss_dssp             TTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-------CHHHHHTTCCC-------
T ss_pred             ccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCC-CCHHHHHHHHHcCCCC-------
Confidence            32110       1112233343      4789999999999999999988887432 2233333333333211       


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                         ..+..++.++.+++.+||+.||++||+|.||++.|+++...
T Consensus       254 ---~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~  294 (311)
T d1r0pa_         254 ---LQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  294 (311)
T ss_dssp             ---CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             ---CCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence               11233446799999999999999999999999999999754

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-46  Score=369.09  Aligned_cols=239  Identities=18%  Similarity=0.208  Sum_probs=188.3

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||+|+||.||+|+.. +|..||||++......     ..+.|.+|+++|++++|||||++++++...+  ..++|
T Consensus        15 ~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~-----~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~~~lv   87 (288)
T d2jfla1          15 EIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEE-----ELEDYMVEIDILASCDHPNIVKLLDAFYYEN--NLWIL   87 (288)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSG-----GGGGTHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             EEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHH-----HHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC--eEEEE
Confidence            34578999999999999964 6889999998654322     2456889999999999999999999999877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      ||||++|+|.+++... ...+++..+..++.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++......
T Consensus        88 mEy~~~g~L~~~~~~~-~~~l~e~~~~~i~~qi~~gL~ylH~~~--ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~  164 (288)
T d2jfla1          88 IEFCAGGAVDAVMLEL-ERPLTESQIQVVCKQTLDALNYLHDNK--IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTI  164 (288)
T ss_dssp             EECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECHHHH
T ss_pred             EecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EEEeecChhheeECCCCCEEEEechhhhccCCCc
Confidence            9999999999987533 356899999999999999999999999  9999999999999999999999999997654322


Q ss_pred             h---hhcccccCCCC-----------CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          460 M---AATSKKLSSAP-----------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       460 ~---~~~~~~~~~~~-----------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      .   ....+..+++|           .++.++|||||||++|||+||+.||...  ...+...........        .
T Consensus       165 ~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~--~~~~~~~~i~~~~~~--------~  234 (288)
T d2jfla1         165 QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHEL--NPMRVLLKIAKSEPP--------T  234 (288)
T ss_dssp             HHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTS--CGGGHHHHHHHSCCC--------C
T ss_pred             ccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCC--CHHHHHHHHHcCCCC--------C
Confidence            1   11112233333           3678999999999999999999999532  233333333333111        1


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ...+...+.++.+++.+||+.||++|||++|+++
T Consensus       235 ~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         235 LAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             CSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CCccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1123344567999999999999999999999864

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-46  Score=364.09  Aligned_cols=243  Identities=24%  Similarity=0.349  Sum_probs=187.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecC--CCcceEE
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE--EPFTRMM  378 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~~~l  378 (592)
                      |.+.||+|+||+||+|+.. ++..||+|.+.....   .....+.|.+|+++|++++|||||++++++...  +....++
T Consensus        13 ~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~---~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~i   89 (270)
T d1t4ha_          13 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL---TKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL   89 (270)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhC---CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEE
Confidence            4567999999999999964 588999998865432   234456799999999999999999999998652  2225689


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc-CCCceEEecCCcchhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~-~~~~~ki~DfGla~~~~~  457 (592)
                      |||||++|+|.+++...  ..+++..+..++.|++.||+|||+++++|+||||||+|||++ +++.+||+|||+++....
T Consensus        90 vmE~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~  167 (270)
T d1t4ha_          90 VTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  167 (270)
T ss_dssp             EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             EEeCCCCCcHHHHHhcc--ccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccC
Confidence            99999999999998643  468999999999999999999999888899999999999996 578999999999986532


Q ss_pred             hhh-hhcccccCCCCC-----CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 007711          458 AEM-AATSKKLSSAPS-----ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  531 (592)
Q Consensus       458 ~~~-~~~~~~~~~~~~-----~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (592)
                      ... ....+..+++||     ++.++|||||||++|||+||+.||... ....+.......+....         .++..
T Consensus       168 ~~~~~~~GT~~Y~aPE~~~~~~~~~~DIwSlGvilyel~~g~~Pf~~~-~~~~~~~~~i~~~~~~~---------~~~~~  237 (270)
T d1t4ha_         168 SFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSEC-QNAAQIYRRVTSGVKPA---------SFDKV  237 (270)
T ss_dssp             TSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTC-SSHHHHHHHHTTTCCCG---------GGGGC
T ss_pred             CccCCcccCccccCHHHhCCCCCCcCchhhHHHHHHHHHHCCCCCCCc-ccHHHHHHHHHcCCCCc---------ccCcc
Confidence            211 111122334443     789999999999999999999999532 23333333333321111         11122


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          532 QLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       532 ~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .+.++.+++.+||+.||++|||++|+++
T Consensus       238 ~~~~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         238 AIPEVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             CCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence            3356889999999999999999999874

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-46  Score=366.15  Aligned_cols=239  Identities=20%  Similarity=0.270  Sum_probs=184.8

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||+|+||+||+|+. .+|+.||||++......    ...+.|.+|+++|++++|||||++++++.+.+  ..++|
T Consensus         8 ~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~----~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~--~~~iv   81 (271)
T d1nvra_           8 DLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV----DCPENIKKEICINKMLNHENVVKFYGHRREGN--IQYLF   81 (271)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-----------CHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             EEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcc----hHHHHHHHHHHHHHhCCCCCEeeEeeeeccCc--eeEEE
Confidence            3458899999999999996 46899999998654322    23456899999999999999999999999887  77999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      ||||++|+|.+++..  ...+++.....++.|++.||+|||+++  |+||||||+|||+++++.+||+|||+++......
T Consensus        82 mEy~~gg~L~~~l~~--~~~l~e~~~~~i~~qi~~al~ylH~~~--IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~  157 (271)
T d1nvra_          82 LEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLHGIG--ITHRDIKPENLLLDERDNLKISDFGLATVFRYNN  157 (271)
T ss_dssp             EECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred             EeccCCCcHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHcC--CccCcccHHHEEECCCCCEEEccchhheeeccCC
Confidence            999999999999863  457899999999999999999999999  9999999999999999999999999998753221


Q ss_pred             h-----hhcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          460 M-----AATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       460 ~-----~~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      .     ....+..+++||       ++.++|||||||++|||+||+.||.........+.. .... ...        ..
T Consensus       158 ~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~-~~~~-~~~--------~~  227 (271)
T d1nvra_         158 RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSD-WKEK-KTY--------LN  227 (271)
T ss_dssp             EECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHH-HHTT-CTT--------ST
T ss_pred             ccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHH-HhcC-CCC--------CC
Confidence            1     111123344544       367799999999999999999999654433322221 1111 110        01


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .....+.++.+++.+||+.||++|||++|+++
T Consensus       228 ~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         228 PWKKIDSAPLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            11233457889999999999999999999864

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-45  Score=364.42  Aligned_cols=237  Identities=19%  Similarity=0.296  Sum_probs=189.5

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||+||+|+. .+|..||||++.......     .+.+.+|+++|++++|||||++++++...+  ..++|
T Consensus        23 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~-----~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~iv   95 (293)
T d1yhwa1          23 TRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK-----KELIINEILVMRENKNPNIVNYLDSYLVGD--ELWVV   95 (293)
T ss_dssp             CSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSC-----HHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             EEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChH-----HHHHHHHHHHHHhCCCCCEeeEeEEEEECC--EEEEE
Confidence            3457899999999999995 568999999987544322     467999999999999999999999999877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      ||||++|+|.+++..   ..+++.....++.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++......
T Consensus        96 mEy~~gg~L~~~~~~---~~l~~~~~~~i~~qi~~aL~yLH~~~--iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~  170 (293)
T d1yhwa1          96 MEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ  170 (293)
T ss_dssp             EECCTTCBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred             EEecCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHCC--CcccCCcHHHeEECCCCcEeeccchhheeecccc
Confidence            999999999988753   35899999999999999999999999  9999999999999999999999999998763221


Q ss_pred             ---------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          460 ---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       460 ---------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                               ..+.+||......++.++|||||||++|||+||+.||..  ....+...........  .      ...+.
T Consensus       171 ~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~--~~~~~~~~~~~~~~~~--~------~~~~~  240 (293)
T d1yhwa1         171 SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLN--ENPLRALYLIATNGTP--E------LQNPE  240 (293)
T ss_dssp             CCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHHCSC--C------CSSGG
T ss_pred             ccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCC--CCHHHHHHHHHhCCCC--C------CCCcc
Confidence                     223344444444578999999999999999999999943  2333333333222111  0      01233


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..+..+.+++.+||+.||++|||+.|+++
T Consensus       241 ~~s~~~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         241 KLSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             GSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             cCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            44567999999999999999999999864

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-46  Score=366.09  Aligned_cols=245  Identities=22%  Similarity=0.332  Sum_probs=183.5

Q ss_pred             hhhcccCcCCCeEEEEEEeC--CC--cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          301 DFSNVIGSSPIGTVYKGTLS--NG--VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~--~~--~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      ++.+.||+|+||.||+|++.  ++  ..||||++.......  ....++|.+|+++|++++|||||+++|+|.+.   ..
T Consensus        11 ~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~--~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~---~~   85 (273)
T d1u46a_          11 RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ--PEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP---PM   85 (273)
T ss_dssp             EEEEECC----CCCEEEEEECTTSCEEEEEEEC----------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS---SC
T ss_pred             EEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCC--HHHHHHHHHHHHHHHhCCCCCEEEEEEEEeec---ch
Confidence            34578999999999999863  22  367888775443222  34567899999999999999999999999764   35


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|||||++|++.+++... ...+++..+++++.|+|.||.|||+++  |+||||||+|||++.++.+||+|||+++...
T Consensus        86 ~lv~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~qi~~gl~ylH~~~--iiHrDikp~NIll~~~~~vkl~DfGl~~~~~  162 (273)
T d1u46a_          86 KMVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLESKR--FIHRDLAARNLLLATRDLVKIGDFGLMRALP  162 (273)
T ss_dssp             EEEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred             heeeeeecCcchhhhhhcc-cCCCCHHHHHHHHHHHHHHHHHhhhCC--EeeeeecHHHhccccccceeeccchhhhhcc
Confidence            8999999999999887643 346899999999999999999999998  9999999999999999999999999998763


Q ss_pred             hhhh------hhcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          457 MAEM------AATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       457 ~~~~------~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ....      ....+..+.+|+      ++.++|||||||++|||+| |+.||.  +.+..+............      
T Consensus       163 ~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~--~~~~~~~~~~i~~~~~~~------  234 (273)
T d1u46a_         163 QNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWI--GLNGSQILHKIDKEGERL------  234 (273)
T ss_dssp             C-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTT--TCCHHHHHHHHHTSCCCC------
T ss_pred             cCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCC--CcCHHHHHHHHHhCCCCC------
Confidence            2211      111223344444      6888999999999999998 899994  444445444444332111      


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  564 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i  564 (592)
                         ..+..++..+.+++.+||+.||++||||.||++.|++.
T Consensus       235 ---~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         235 ---PRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             ---CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ---CCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence               11233446799999999999999999999999999874

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3e-45  Score=367.63  Aligned_cols=241  Identities=18%  Similarity=0.187  Sum_probs=189.5

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +...+.||+|+||+||+|+. .+|..||||++.......  ....++|.+|+++|++++|||||++++++.+.+  ..++
T Consensus        17 y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~--~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~--~~~i   92 (309)
T d1u5ra_          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS--NEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH--TAWL   92 (309)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCH--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT--EEEE
T ss_pred             cEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccC--HHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECC--EEEE
Confidence            34457899999999999995 568899999986543322  344567999999999999999999999998877  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |||||++|+|..++.  ....+++..+..++.||+.||.|||+++  |+||||||+|||+++++.+||+|||+++.....
T Consensus        93 v~E~~~~g~l~~~~~--~~~~l~e~~~~~i~~qi~~aL~yLH~~~--iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~  168 (309)
T d1u5ra_          93 VMEYCLGSASDLLEV--HKKPLQEVEIAAVTHGALQGLAYLHSHN--MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA  168 (309)
T ss_dssp             EEECCSEEHHHHHHH--HTSCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB
T ss_pred             EEEecCCCchHHHHH--hCCCCCHHHHHHHHHHHHHHHHHHHhCC--EeccCCCcceEEECCCCCEEEeecccccccCCC
Confidence            999999999976654  3357899999999999999999999999  999999999999999999999999999876432


Q ss_pred             -----hhhhcccccCC---CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          459 -----EMAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       459 -----~~~~~~~~~~~---~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                           +..+.+||...   ...++.++|||||||++|||+||+.||..  ....+............  ..       +.
T Consensus       169 ~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~--~~~~~~~~~i~~~~~~~--~~-------~~  237 (309)
T d1u5ra_         169 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN--MNAMSALYHIAQNESPA--LQ-------SG  237 (309)
T ss_dssp             CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCCCC--CS-------CT
T ss_pred             CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCCC--CC-------CC
Confidence                 22334444322   22368899999999999999999999943  33333333333332111  11       12


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..++.+.+++.+||+.||++|||++|+++
T Consensus       238 ~~s~~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         238 HWSEYFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CCCHHHHHHHHHHCcCChhHCcCHHHHHh
Confidence            23457899999999999999999999875

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-46  Score=369.44  Aligned_cols=246  Identities=20%  Similarity=0.316  Sum_probs=183.9

Q ss_pred             HhhhhcccCcCCCeEEEEEEeCC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCc
Q 007711          299 CEDFSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  374 (592)
Q Consensus       299 ~~~~~~~lG~G~~g~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  374 (592)
                      ..++.+.||+|+||.||+|++..    +..||||.+....    .....+.|.+|+++|++++|||||+++|+|.+.   
T Consensus         8 ~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~----~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~---   80 (273)
T d1mp8a_           8 RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT----SDSVREKFLQEALTMRQFDHPHIVKLIGVITEN---   80 (273)
T ss_dssp             GEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT----SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS---
T ss_pred             HeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEecccc----CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC---
Confidence            34567899999999999998743    3456777653221    234567899999999999999999999999653   


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..++||||+++|+|.+++.. ....+++..++.++.|++.||+|||+++  |+||||||+||++++++.+||+|||+++.
T Consensus        81 ~~~iv~E~~~~g~l~~~~~~-~~~~l~~~~~~~~~~qi~~gl~ylH~~~--iiHrDlKp~NIll~~~~~~Kl~DfG~a~~  157 (273)
T d1mp8a_          81 PVWIIMELCTLGELRSFLQV-RKYSLDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVSSNDCVKLGDFGLSRY  157 (273)
T ss_dssp             SCEEEEECCTTEEHHHHHHH-TTTTSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEEETTEEEECC------
T ss_pred             eEEEEEEeccCCcHHhhhhc-cCCCCCHHHHHHHHHHHHHHhhhhcccC--eeccccchhheeecCCCcEEEccchhhee
Confidence            46899999999999988753 3457899999999999999999999999  99999999999999999999999999987


Q ss_pred             hhhhhh----hhcccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCC
Q 007711          455 IAMAEM----AATSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  523 (592)
Q Consensus       455 ~~~~~~----~~~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (592)
                      ......    ....+..+++|      .++.++|||||||++|||+| |+.||...  ...+.......+..        
T Consensus       158 ~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~--~~~~~~~~i~~~~~--------  227 (273)
T d1mp8a_         158 MEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV--KNNDVIGRIENGER--------  227 (273)
T ss_dssp             -------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTC--CGGGHHHHHHTTCC--------
T ss_pred             ccCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCC--CHHHHHHHHHcCCC--------
Confidence            643221    11112234444      47889999999999999998 89999533  23333333332211        


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          524 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       524 ~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                        ...+..++.++.+++.+||+.||++|||+.||++.|+++++
T Consensus       228 --~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~  268 (273)
T d1mp8a_         228 --LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE  268 (273)
T ss_dssp             --CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             --CCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence              12233455679999999999999999999999999998864

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-45  Score=368.67  Aligned_cols=249  Identities=23%  Similarity=0.383  Sum_probs=191.7

Q ss_pred             hhcccCcCCCeEEEEEEeCC-Cc--EEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecCCCcceE
Q 007711          302 FSNVIGSSPIGTVYKGTLSN-GV--EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~-~~--~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.||+|+||+||+|++++ |.  .||||.+.....    ....++|.+|+++|+++ +|||||+++|+|...+  ..+
T Consensus        14 ~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~--~~~   87 (309)
T d1fvra_          14 FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS----KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG--YLY   87 (309)
T ss_dssp             EEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC----------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT--EEE
T ss_pred             EEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccC----hHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCC--eeE
Confidence            46889999999999999753 44  355666543222    22356799999999998 7999999999999877  679


Q ss_pred             EEEeeCCCCCchhhcccc--------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCc
Q 007711          378 MVFEYAPNGTLFEHIHIK--------------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA  443 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~--------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~  443 (592)
                      +||||+++|+|.++++..              ....++|..+.+++.|||.|+.|||+.+  |+||||||+|||++.++.
T Consensus        88 iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~--iiHrDlkp~NIL~~~~~~  165 (309)
T d1fvra_          88 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ--FIHRDLAARNILVGENYV  165 (309)
T ss_dssp             EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECGGGC
T ss_pred             EEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCC--ccccccccceEEEcCCCc
Confidence            999999999999998643              2467999999999999999999999998  999999999999999999


Q ss_pred             eEEecCCcchhhhhhhh--hhcccccCCCC------CCCCCCcchhhHHHHHHHHhCCC-cccCCCCChHHHHHHHhcCC
Q 007711          444 AKLSDLSFWNEIAMAEM--AATSKKLSSAP------SASLESNVYNFGVLLFEMVTGRL-PYLVDNGSLEDWAADYLSGV  514 (592)
Q Consensus       444 ~ki~DfGla~~~~~~~~--~~~~~~~~~~~------~~s~ksDVwSfGvvl~El~tG~~-P~~~~~~~~~~~~~~~~~~~  514 (592)
                      +||+|||+++.......  ....+..+++|      .++.++|||||||++|||+||.. ||  ......+.......+.
T Consensus       166 ~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~--~~~~~~~~~~~i~~~~  243 (309)
T d1fvra_         166 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPY--CGMTCAELYEKLPQGY  243 (309)
T ss_dssp             EEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTT--TTCCHHHHHHHGGGTC
T ss_pred             eEEccccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCC--CCCCHHHHHHHHHhcC
Confidence            99999999976532211  11122333444      37899999999999999999765 56  3344444444433321


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCCCCC
Q 007711          515 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  570 (592)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~~~~  570 (592)
                      .          ...+..++.++.+++.+||+.||++||||+||++.|++++...+.
T Consensus       244 ~----------~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~~~  289 (309)
T d1fvra_         244 R----------LEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKT  289 (309)
T ss_dssp             C----------CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSSC
T ss_pred             C----------CCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCcC
Confidence            1          122334556899999999999999999999999999999866543

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-45  Score=368.82  Aligned_cols=243  Identities=18%  Similarity=0.288  Sum_probs=188.0

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCc----EEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcce
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGV----EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~----~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~  376 (592)
                      +.+.||+|+||+||+|++. +|+    .||+|.+....    .....++|.+|++++++++|||||+++|+|.+..   .
T Consensus        13 ~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~---~   85 (317)
T d1xkka_          13 KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT----SPKANKEILDEAYVMASVDNPHVCRLLGICLTST---V   85 (317)
T ss_dssp             EEEEEEECSSEEEEEEEECC----CCEEEEEEEECC--------CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSS---E
T ss_pred             EeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEecccc----CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC---e
Confidence            4588999999999999964 444    47777664322    1234678999999999999999999999998754   5


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++++||+.+|+|.+++.. ....++|..+++|+.|||.||+|||+++  |+||||||+|||++.++.+||+|||+++...
T Consensus        86 ~~v~e~~~~~~l~~~~~~-~~~~~~~~~~~~i~~qi~~gl~yLH~~~--iiHrDlKp~NIll~~~~~~kl~DFGla~~~~  162 (317)
T d1xkka_          86 QLITQLMPFGCLLDYVRE-HKDNIGSQYLLNWCVQIAKGMNYLEDRR--LVHRDLAARNVLVKTPQHVKITDFGLAKLLG  162 (317)
T ss_dssp             EEEEECCTTCBHHHHHHH-TSSSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEEETTEEEECCCSHHHHTT
T ss_pred             eEEEEeccCCcccccccc-cccCCCHHHHHHHHHHHHHHHHHHHHcC--cccCcchhhcceeCCCCCeEeeccccceecc
Confidence            789999999999988764 4567899999999999999999999998  9999999999999999999999999998764


Q ss_pred             hhhhh-----hcccccCCCCC------CCCCCcchhhHHHHHHHHh-CCCcccCCCCChHHHHHHHhcCCCCCccccCCC
Q 007711          457 MAEMA-----ATSKKLSSAPS------ASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  524 (592)
Q Consensus       457 ~~~~~-----~~~~~~~~~~~------~s~ksDVwSfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (592)
                      .....     ...+..+++||      ++.++|||||||++|||+| |+.||....  ..+.......+..         
T Consensus       163 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~--~~~~~~~i~~~~~---------  231 (317)
T d1xkka_         163 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--ASEISSILEKGER---------  231 (317)
T ss_dssp             TTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC--GGGHHHHHHHTCC---------
T ss_pred             cccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHcCCC---------
Confidence            32211     11233455554      7999999999999999999 888985322  2222222222211         


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          525 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       525 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                       ...++.++..+.+++.+||+.||.+||||.||++.|+.+..
T Consensus       232 -~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~  272 (317)
T d1xkka_         232 -LPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  272 (317)
T ss_dssp             -CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -CCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHh
Confidence             11234455679999999999999999999999999988753

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-45  Score=371.32  Aligned_cols=248  Identities=15%  Similarity=0.250  Sum_probs=187.6

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||+||+|+. .+|..||+|++.....    ....+++.+|+++|++++|||||+++++|.+..  ..++||
T Consensus        10 ~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~----~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~--~~~iVm   83 (322)
T d1s9ja_          10 KISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIK----PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--EISICM   83 (322)
T ss_dssp             EEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCC----TTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhC----HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEEE
Confidence            457899999999999996 4689999999865432    234578999999999999999999999999877  789999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      |||++|+|.+++...  ..+++..+..++.|++.||.|||+ ++  |+||||||+|||+++++.+||+|||+|+......
T Consensus        84 Ey~~gg~L~~~l~~~--~~l~~~~~~~~~~qil~aL~yLH~~~~--IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~  159 (322)
T d1s9ja_          84 EHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM  159 (322)
T ss_dssp             ECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHHC--CCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHT
T ss_pred             EcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHhCC--EEccccCHHHeeECCCCCEEEeeCCCccccCCCc
Confidence            999999999998643  468999999999999999999997 47  9999999999999999999999999999765432


Q ss_pred             h-hhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHH-hcCCCC------------Ccc
Q 007711          460 M-AATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY-LSGVQP------------LQQ  519 (592)
Q Consensus       460 ~-~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~-~~~~~~------------~~~  519 (592)
                      . ....+..+++||      ++.++|||||||++|||+||+.||...+.......... ..+...            ...
T Consensus       160 ~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (322)
T d1s9ja_         160 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSS  239 (322)
T ss_dssp             C---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC------------------------
T ss_pred             cccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccc
Confidence            2 122234455554      89999999999999999999999965443322111000 000000            000


Q ss_pred             -----------------ccCCCCCCCC-HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          520 -----------------FVDPTLSSFD-EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       520 -----------------~~~~~~~~~~-~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                       +........+ ...+.++.+++.+||+.||++|||++|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~  297 (322)
T d1s9ja_         240 YGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV  297 (322)
T ss_dssp             ------CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence                             0000000000 112356889999999999999999999976

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-45  Score=364.59  Aligned_cols=239  Identities=20%  Similarity=0.270  Sum_probs=190.3

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +++.+.||+|+||+||+|+. .+|+.||||++.......  ....+.|.+|+++|++++|||||++++++.+.+  ..++
T Consensus        10 y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~~~i   85 (288)
T d1uu3a_          10 FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIK--ENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE--KLYF   85 (288)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSS--EEEE
T ss_pred             CEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccC--HHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECC--EEEE
Confidence            34568999999999999996 468999999986533211  123467999999999999999999999998877  7799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |||||++|+|.+++...  ..+++.....++.|++.||+|||+++  |+||||||+|||+++++.+||+|||+++.+...
T Consensus        86 vmEy~~gg~L~~~~~~~--~~l~e~~~~~~~~qi~~al~ylH~~~--iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~  161 (288)
T d1uu3a_          86 GLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGKG--IIHRDLKPENILLNEDMHIQITDFGTAKVLSPE  161 (288)
T ss_dssp             EECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTSCEEECCCTTCEECC--
T ss_pred             EEEccCCCCHHHhhhcc--CCCCHHHHHHHHHHHHHHHHhhcccc--EEcCcCCccccccCCCceEEecccccceecccC
Confidence            99999999999988643  46899999999999999999999999  999999999999999999999999999876322


Q ss_pred             h-----------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          459 E-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       459 ~-----------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      .           ..+.+||......++.++|||||||++|||+||+.||..  .+..+...........           
T Consensus       162 ~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~--~~~~~~~~~i~~~~~~-----------  228 (288)
T d1uu3a_         162 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA--GNEYLIFQKIIKLEYD-----------  228 (288)
T ss_dssp             --------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHTTCCC-----------
T ss_pred             CcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCC--cCHHHHHHHHHcCCCC-----------
Confidence            1           122333333334478999999999999999999999953  3444444444433211           


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ++...+.++.+++.+||+.||++|||++|+..
T Consensus       229 ~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~  260 (288)
T d1uu3a_         229 FPEKFFPKARDLVEKLLVLDATKRLGCEEMEG  260 (288)
T ss_dssp             CCTTCCHHHHHHHHTTSCSSGGGSTTSGGGTC
T ss_pred             CCccCCHHHHHHHHHHccCCHhHCcCHHHHcC
Confidence            12233457899999999999999999998754

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-45  Score=366.50  Aligned_cols=254  Identities=22%  Similarity=0.346  Sum_probs=192.2

Q ss_pred             HHHHHHhhhhcccCcCCCeEEEEEEeCC--------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeee
Q 007711          294 ELEAACEDFSNVIGSSPIGTVYKGTLSN--------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNL  364 (592)
Q Consensus       294 el~~~~~~~~~~lG~G~~g~Vy~g~~~~--------~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l  364 (592)
                      ++......+.+.||+|+||.||+|+...        +..||||++....    ......+|.+|+..+.++ +|||||++
T Consensus         9 ~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~----~~~~~~~~~~e~~~l~~~~~HpnIv~~   84 (299)
T d1fgka_           9 ELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA----TEKDLSDLISEMEMMKMIGKHKNIINL   84 (299)
T ss_dssp             BCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             cccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECccc----ChHHHHHHHHHHHHHHHhcCCCeEEec
Confidence            3333445567899999999999998532        3478898875322    234567889999999888 89999999


Q ss_pred             eEEEecCCCcceEEEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeC
Q 007711          365 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNY  430 (592)
Q Consensus       365 ~g~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~d  430 (592)
                      +|+|.+.+  ..++|||||++|+|.++++...              ...+++.++++++.|++.||+|||+++  |||||
T Consensus        85 ~~~~~~~~--~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~--ivHrD  160 (299)
T d1fgka_          85 LGACTQDG--PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK--CIHRD  160 (299)
T ss_dssp             EEEECSSS--SCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSC
T ss_pred             ccccccCC--eEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCC--EEeee
Confidence            99999876  6799999999999999997542              246899999999999999999999999  99999


Q ss_pred             cCCCCeEEcCCCceEEecCCcchhhhhhhh-----------hhcccccCCCCCCCCCCcchhhHHHHHHHHh-CCCcccC
Q 007711          431 LNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLV  498 (592)
Q Consensus       431 Lk~~NiLl~~~~~~ki~DfGla~~~~~~~~-----------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~t-G~~P~~~  498 (592)
                      |||+|||++.++.+||+|||+++.......           .+.+++......++.|+||||||||+|||+| |+.||. 
T Consensus       161 iKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~-  239 (299)
T d1fgka_         161 LAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP-  239 (299)
T ss_dssp             CSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST-
T ss_pred             ecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCC-
Confidence            999999999999999999999987653321           1222232233458999999999999999999 788883 


Q ss_pred             CCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          499 DNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                       +....+.......+ ...         ..+..++.++.+++.+||+.||.+||||.||++.|++++..
T Consensus       240 -~~~~~~~~~~i~~~-~~~---------~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~a~  297 (299)
T d1fgka_         240 -GVPVEELFKLLKEG-HRM---------DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVAL  297 (299)
T ss_dssp             -TCCHHHHHHHHHTT-CCC---------CCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHcC-CCC---------CCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHhhc
Confidence             33334333332222 111         12233446799999999999999999999999999998643

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.6e-44  Score=360.66  Aligned_cols=241  Identities=18%  Similarity=0.276  Sum_probs=180.9

Q ss_pred             hhhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +++.+.||+|+||+||+|+.. +|+.||||++.......    ....|.+|+++|++++|||||++++++.+.+  ..++
T Consensus        11 Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~----~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~--~~~l   84 (307)
T d1a06a_          11 YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG----KEGSMENEIAVLHKIKHPNIVALDDIYESGG--HLYL   84 (307)
T ss_dssp             EEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC--------------CHHHHHHHTCCCTTBCCEEEEEECSS--EEEE
T ss_pred             eEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhh----HHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEE
Confidence            445689999999999999964 68899999987544322    2456889999999999999999999998877  7899


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc---CCCceEEecCCcchhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT---EDYAAKLSDLSFWNEI  455 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~---~~~~~ki~DfGla~~~  455 (592)
                      |||||++|+|.+++..  ...+++.....++.|++.||+|||+.+  |+||||||+|||+.   +++.+||+|||+++..
T Consensus        85 vmE~~~gg~L~~~l~~--~~~l~e~~~~~~~~qi~~al~ylH~~~--iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~  160 (307)
T d1a06a_          85 IMQLVSGGELFDRIVE--KGFYTERDASRLIFQVLDAVKYLHDLG--IVHRDLKPENLLYYSLDEDSKIMISDFGLSKME  160 (307)
T ss_dssp             EECCCCSCBHHHHHHT--CSCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEESSSSTTCCEEECCC------
T ss_pred             EEeccCCCcHHHhhhc--ccCCCHHHHHHHHHHHHHHHHhhhhce--eeeEEecccceeecccCCCceEEEeccceeEEc
Confidence            9999999999999963  457999999999999999999999999  99999999999995   5789999999999876


Q ss_pred             hhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 007711          456 AMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  527 (592)
Q Consensus       456 ~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (592)
                      ....        ..+.+||......++.++|||||||++|||+||+.||.  +....+..............   +    
T Consensus       161 ~~~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~--~~~~~~~~~~i~~~~~~~~~---~----  231 (307)
T d1a06a_         161 DPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFY--DENDAKLFEQILKAEYEFDS---P----  231 (307)
T ss_dssp             ------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCC--CSSHHHHHHHHHTTCCCCCT---T----
T ss_pred             cCCCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCC--CCCHHHHHHHHhccCCCCCC---c----
Confidence            4322        22333444444458999999999999999999999994  33344444444443222111   1    


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          528 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       528 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      .....+.++.+++.+||+.||++|||++|+++
T Consensus       232 ~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         232 YWDDISDSAKDFIRHLMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             TTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             cccCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence            12233457899999999999999999999876

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-45  Score=366.67  Aligned_cols=254  Identities=19%  Similarity=0.281  Sum_probs=184.5

Q ss_pred             HHHHHhhhhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEE
Q 007711          295 LEAACEDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGF  367 (592)
Q Consensus       295 l~~~~~~~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~  367 (592)
                      +......+.+.||+|+||.||+|++.      +++.||||++....    .....+.|.+|+..+.++ +|+|||+++++
T Consensus        10 i~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~----~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~   85 (299)
T d1ywna1          10 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA----THSEHRALMSELKILIHIGHHLNVVNLLGA   85 (299)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC--------CHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEcccc----CcHHHHHHHHHHHHHHhhcCCCeEEEeeee
Confidence            33334556789999999999999863      24679999875332    233456788888888877 68999999999


Q ss_pred             EecCCCcceEEEEeeCCCCCchhhccccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCC
Q 007711          368 CEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNS  433 (592)
Q Consensus       368 ~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~  433 (592)
                      +...+. ..++|||||++|+|.++++...              ...++|..++.++.||+.||+|||+++  |+||||||
T Consensus        86 ~~~~~~-~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~--ivHrDlKp  162 (299)
T d1ywna1          86 CTKPGG-PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLAA  162 (299)
T ss_dssp             ECSTTS-CCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCG
T ss_pred             eccCCC-eEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCC--CcCCcCCc
Confidence            876543 4689999999999999986432              235889999999999999999999998  99999999


Q ss_pred             CCeEEcCCCceEEecCCcchhhhhhhhh-----hcccccCCCCC------CCCCCcchhhHHHHHHHHhC-CCcccCCCC
Q 007711          434 SAVHLTEDYAAKLSDLSFWNEIAMAEMA-----ATSKKLSSAPS------ASLESNVYNFGVLLFEMVTG-RLPYLVDNG  501 (592)
Q Consensus       434 ~NiLl~~~~~~ki~DfGla~~~~~~~~~-----~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG-~~P~~~~~~  501 (592)
                      +|||+++++.+||+|||+++........     ...+..+++||      ++.++|||||||++|||+|| +.||.....
T Consensus       163 ~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~  242 (299)
T d1ywna1         163 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI  242 (299)
T ss_dssp             GGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCC
T ss_pred             cceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCH
Confidence            9999999999999999999865322111     11223445554      79999999999999999996 557743222


Q ss_pred             ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          502 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                        .+.+...+......         ..++.++.++.+++.+||+.||++||||+||++.|+++++
T Consensus       243 --~~~~~~~~~~~~~~---------~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq  296 (299)
T d1ywna1         243 --DEEFCRRLKEGTRM---------RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  296 (299)
T ss_dssp             --SHHHHHHHHHTCCC---------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHhcCCCC---------CCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence              22222222221111         1233345679999999999999999999999999999874

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-44  Score=362.42  Aligned_cols=247  Identities=20%  Similarity=0.316  Sum_probs=194.8

Q ss_pred             hhhhcccCcCCCeEEEEEEeC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC
Q 007711          300 EDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP  373 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  373 (592)
                      ..+.+.||+|+||+||+|.+.      ++..||||++....    .......|.+|++++++++|||||+++|+|...+ 
T Consensus        22 ~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~----~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~-   96 (308)
T d1p4oa_          22 ITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA----SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ-   96 (308)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS----CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS-
T ss_pred             eEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECccc----ChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCC-
Confidence            345688999999999999873      35789999875322    2344567999999999999999999999998777 


Q ss_pred             cceEEEEeeCCCCCchhhcccc--------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceE
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIK--------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAK  445 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~--------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~k  445 (592)
                       ..++|||||++|+|.++++..        ....++|..+.+++.++|+||.|||+++  |+||||||+|||+|+++++|
T Consensus        97 -~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~--ivHrDlk~~NiLld~~~~~K  173 (308)
T d1p4oa_          97 -PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK--FVHRDLAARNCMVAEDFTVK  173 (308)
T ss_dssp             -SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT--CBCSCCSGGGEEECTTCCEE
T ss_pred             -ceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCC--eeeceEcCCceeecCCceEE
Confidence             569999999999999988632        2245789999999999999999999998  99999999999999999999


Q ss_pred             EecCCcchhhhhhhhhh-----cccccCCCC------CCCCCCcchhhHHHHHHHHhCC-CcccCCCCChHHHHHHHhcC
Q 007711          446 LSDLSFWNEIAMAEMAA-----TSKKLSSAP------SASLESNVYNFGVLLFEMVTGR-LPYLVDNGSLEDWAADYLSG  513 (592)
Q Consensus       446 i~DfGla~~~~~~~~~~-----~~~~~~~~~------~~s~ksDVwSfGvvl~El~tG~-~P~~~~~~~~~~~~~~~~~~  513 (592)
                      |+|||+++.........     ..+..+++|      .++.++|||||||++|||+||+ .||  ......++......+
T Consensus       174 l~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~--~~~~~~~~~~~i~~~  251 (308)
T d1p4oa_         174 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPY--QGLSNEQVLRFVMEG  251 (308)
T ss_dssp             ECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTT--TTSCHHHHHHHHHTT
T ss_pred             EeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHhC
Confidence            99999998764332211     112234444      3688999999999999999975 666  344555555444432


Q ss_pred             CCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          514 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                      .          ....+..++..+.+++.+||+.||++||||+||++.|++.+.
T Consensus       252 ~----------~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~  294 (308)
T d1p4oa_         252 G----------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  294 (308)
T ss_dssp             C----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             C----------CCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            1          112233445679999999999999999999999999998754

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-44  Score=356.38  Aligned_cols=245  Identities=19%  Similarity=0.277  Sum_probs=192.8

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCC-chhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDW-PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~  377 (592)
                      +++.+.||+|+||+||+|+. .+|..||||++........ .....+.|.+|+++|++++|||||++++++.+.+  ..+
T Consensus        12 Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~   89 (293)
T d1jksa_          12 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKT--DVI   89 (293)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEE
T ss_pred             EEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEE
Confidence            44568899999999999997 4689999999876543321 1224578999999999999999999999999877  779


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC----ceEEecCCcch
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY----AAKLSDLSFWN  453 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~----~~ki~DfGla~  453 (592)
                      +|||||++|+|.+++...  ..+++.....++.|++.||+|||+.+  |+||||||+|||++.++    .+|++|||+++
T Consensus        90 iv~E~~~gg~L~~~i~~~--~~l~~~~~~~~~~qi~~al~yLH~~~--ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~  165 (293)
T d1jksa_          90 LILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH  165 (293)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             EEEEcCCCccccchhccc--cccchhHHHHHHHHHHHHHHhhhhcc--eeecccccceEEEecCCCcccceEecchhhhh
Confidence            999999999999998643  46899999999999999999999999  99999999999999776    49999999998


Q ss_pred             hhhhhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          454 EIAMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       454 ~~~~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ......        ..+.+||......++.++|||||||++|||+||+.||..  ....+................    
T Consensus       166 ~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~--~~~~~~~~~i~~~~~~~~~~~----  239 (293)
T d1jksa_         166 KIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG--DTKQETLANVSAVNYEFEDEY----  239 (293)
T ss_dssp             ECTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHTTCCCCCHHH----
T ss_pred             hcCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCC--CCHHHHHHHHHhcCCCCCchh----
Confidence            764322        123333433344578999999999999999999999953  334444444433322211111    


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                         +...+..+.+++.+||+.||++|||++|+++
T Consensus       240 ---~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         240 ---FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             ---HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ---cCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence               1123457889999999999999999999875

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-45  Score=365.62  Aligned_cols=255  Identities=22%  Similarity=0.335  Sum_probs=194.9

Q ss_pred             HHHHHHhhhhcccCcCCCeEEEEEEe------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeE
Q 007711          294 ELEAACEDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIG  366 (592)
Q Consensus       294 el~~~~~~~~~~lG~G~~g~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g  366 (592)
                      |+......+.+.||+|+||.||+|++      ..++.||||++....    ......+|.+|+.+++++ +|||||+++|
T Consensus        19 ~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~----~~~~~~~~~~E~~~~~~l~~HpnIv~~~g   94 (311)
T d1t46a_          19 EFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA----HLTEREALMSELKVLSYLGNHMNIVNLLG   94 (311)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECccc----CHHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence            44444555678999999999999986      345689999886432    133456799999999999 6999999999


Q ss_pred             EEecCCCcceEEEEeeCCCCCchhhccccC----------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeC
Q 007711          367 FCEEEEPFTRMMVFEYAPNGTLFEHIHIKE----------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNY  430 (592)
Q Consensus       367 ~~~~~~~~~~~lv~Ey~~~gsL~~~l~~~~----------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~d  430 (592)
                      +|....  ..++|||||++|+|.++++...                ...+++..+++++.||++|++|||+.+  ++|||
T Consensus        95 ~~~~~~--~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~--ivHrD  170 (311)
T d1t46a_          95 ACTIGG--PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN--CIHRD  170 (311)
T ss_dssp             EECSSS--SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSC
T ss_pred             EEeeCC--EEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC--eeecc
Confidence            998877  5699999999999999987432                235889999999999999999999998  99999


Q ss_pred             cCCCCeEEcCCCceEEecCCcchhhhhhhhhh-----cccccCCCC------CCCCCCcchhhHHHHHHHHh-CCCcccC
Q 007711          431 LNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA-----TSKKLSSAP------SASLESNVYNFGVLLFEMVT-GRLPYLV  498 (592)
Q Consensus       431 Lk~~NiLl~~~~~~ki~DfGla~~~~~~~~~~-----~~~~~~~~~------~~s~ksDVwSfGvvl~El~t-G~~P~~~  498 (592)
                      |||+||+++.++.+|++|||+++.........     ..+..+++|      .++.++|||||||++|||+| |+.||..
T Consensus       171 LKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~  250 (311)
T d1t46a_         171 LAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPG  250 (311)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred             cccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999998764322111     112233444      47999999999999999999 5555532


Q ss_pred             CCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          499 DNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ...  .+.+..........         ..+..++..+.+|+.+||+.||++||||.||+++|++++..
T Consensus       251 ~~~--~~~~~~~i~~~~~~---------~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~~  308 (311)
T d1t46a_         251 MPV--DSKFYKMIKEGFRM---------LSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE  308 (311)
T ss_dssp             CCS--SHHHHHHHHHTCCC---------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCH--HHHHHHHHhcCCCC---------CCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhhcc
Confidence            222  22222222221111         11223446799999999999999999999999999987643

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.6e-43  Score=361.37  Aligned_cols=241  Identities=16%  Similarity=0.255  Sum_probs=191.3

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +++.+.||+|+||.||+|+. .+|..||||++....     ....+.+.+|+++|++++|||||++++++.+.+  ..++
T Consensus        31 Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~-----~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~--~~~i  103 (352)
T d1koba_          31 YDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY-----PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKY--EMVL  103 (352)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-----HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSS--EEEE
T ss_pred             eEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcc-----hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEE
Confidence            34568899999999999996 469999999886432     223567889999999999999999999998877  7799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc--CCCceEEecCCcchhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT--EDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~--~~~~~ki~DfGla~~~~  456 (592)
                      |||||++|+|.+++.. ....+++.....|+.||+.||+|||+++  |+||||||+|||++  .++.+||+|||+++...
T Consensus       104 vmE~~~gg~L~~~~~~-~~~~l~e~~~~~i~~qi~~aL~ylH~~~--iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~  180 (352)
T d1koba_         104 ILEFLSGGELFDRIAA-EDYKMSEAEVINYMRQACEGLKHMHEHS--IVHLDIKPENIMCETKKASSVKIIDFGLATKLN  180 (352)
T ss_dssp             EEECCCCCBHHHHTTC-TTCCBCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSTTCCCEEECCCTTCEECC
T ss_pred             EEEcCCCChHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecccccccccccccCCCeEEEeecccceecC
Confidence            9999999999987753 3456899999999999999999999999  99999999999998  67899999999998764


Q ss_pred             hhh--------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          457 MAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       457 ~~~--------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      ...        ..+.+|+......++.++|||||||++|||+||+.||.  +.+..+..............       ..
T Consensus       181 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~--~~~~~~~~~~i~~~~~~~~~-------~~  251 (352)
T d1koba_         181 PDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFA--GEDDLETLQNVKRCDWEFDE-------DA  251 (352)
T ss_dssp             TTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSC--CSSHHHHHHHHHHCCCCCCS-------ST
T ss_pred             CCCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHhCCCCCCc-------cc
Confidence            322        22333444444457899999999999999999999994  34444444444443222111       11


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....+.++.+++.+||+.||.+|||+.|+++
T Consensus       252 ~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         252 FSSVSPEAKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             ccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1223457899999999999999999999975

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=9.8e-44  Score=362.62  Aligned_cols=241  Identities=22%  Similarity=0.293  Sum_probs=191.1

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +++.+.||+|+||.||+|+. .+|..||||++....     ....+.+.+|+++|++++|||||++++++.+.+  ..++
T Consensus        28 Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~-----~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~i  100 (350)
T d1koaa2          28 YDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH-----ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDN--EMVM  100 (350)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCS-----HHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETT--EEEE
T ss_pred             eEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccc-----hhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEE
Confidence            44568899999999999996 468999999886432     223567899999999999999999999999877  7899


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC--CCceEEecCCcchhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE--DYAAKLSDLSFWNEIA  456 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~--~~~~ki~DfGla~~~~  456 (592)
                      |||||++|+|.+++.. ....+++..+..|+.||+.||+|||+++  |+||||||+|||++.  ++.+||+|||+++...
T Consensus       101 vmE~~~gg~L~~~l~~-~~~~l~e~~~~~i~~qi~~aL~ylH~~~--iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~  177 (350)
T d1koaa2         101 IYEFMSGGELFEKVAD-EHNKMSEDEAVEYMRQVCKGLCHMHENN--YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLD  177 (350)
T ss_dssp             EECCCCSCBHHHHHTC-TTSCBCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSTTSCCEEECCCTTCEECC
T ss_pred             EEEcCCCCCHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHhcC--CeeeeechhHeeeccCCCCeEEEeecchheecc
Confidence            9999999999998853 3346899999999999999999999999  999999999999964  5789999999998764


Q ss_pred             hhhhh--hcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 007711          457 MAEMA--ATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  528 (592)
Q Consensus       457 ~~~~~--~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (592)
                      .....  ...+..+++||      ++.++|||||||++|||+||+.||.  ..+..+...............       .
T Consensus       178 ~~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~--~~~~~~~~~~i~~~~~~~~~~-------~  248 (350)
T d1koaa2         178 PKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFG--GENDDETLRNVKSCDWNMDDS-------A  248 (350)
T ss_dssp             TTSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHTCCCSCCG-------G
T ss_pred             cccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCC--CCCHHHHHHHHHhCCCCCCcc-------c
Confidence            33211  11123344444      6889999999999999999999994  344555555554432222111       1


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          529 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       529 ~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....++.+.+++.+||+.||++|||++|+++
T Consensus       249 ~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         249 FSGISEDGKDFIRKLLLADPNTRMTIHQALE  279 (350)
T ss_dssp             GGGCCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             ccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1223457899999999999999999999976

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-44  Score=356.47  Aligned_cols=248  Identities=21%  Similarity=0.320  Sum_probs=184.4

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHH--HHHHHHhcCCCCceeeeeEEEecCCC--cceE
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFR--KKIDTLSKVNHKNFVNLIGFCEEEEP--FTRM  377 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~--~e~~~l~~l~H~niv~l~g~~~~~~~--~~~~  377 (592)
                      +.+.||+|+||.||+|++ +|..||||++....        .+++.  .|+..+..++|||||+++|+|...+.  ...+
T Consensus         7 l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~--------~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~   77 (303)
T d1vjya_           7 LQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE--------ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW   77 (303)
T ss_dssp             EEEEEECCSSSEEEEEEE-TTEEEEEEEECGGG--------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred             EEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc--------hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEE
Confidence            457899999999999997 68899999875322        23333  45555667899999999999986542  2468


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcC------CCCeEeeCcCCCCeEEcCCCceEEecCCc
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL------NPPIAHNYLNSSAVHLTEDYAAKLSDLSF  451 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~------~~~ivH~dLk~~NiLl~~~~~~ki~DfGl  451 (592)
                      +|||||++|+|.++++.   ..++|..+.+++.++|.||+|||+.      .++|+||||||+||||++++.+||+|||+
T Consensus        78 lv~Ey~~~g~L~~~l~~---~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl  154 (303)
T d1vjya_          78 LVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  154 (303)
T ss_dssp             EEEECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred             EEEecccCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCc
Confidence            99999999999999974   3589999999999999999999974      23599999999999999999999999999


Q ss_pred             chhhhhhhh-------hhcccccCCCCC------------CCCCCcchhhHHHHHHHHhCCCcccCCC------------
Q 007711          452 WNEIAMAEM-------AATSKKLSSAPS------------ASLESNVYNFGVLLFEMVTGRLPYLVDN------------  500 (592)
Q Consensus       452 a~~~~~~~~-------~~~~~~~~~~~~------------~s~ksDVwSfGvvl~El~tG~~P~~~~~------------  500 (592)
                      ++.......       ....+..|++||            ++.|+|||||||+||||+||+.||....            
T Consensus       155 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~  234 (303)
T d1vjya_         155 AVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPS  234 (303)
T ss_dssp             CEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCS
T ss_pred             cccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccc
Confidence            987643211       011123344443            3567999999999999999998874211            


Q ss_pred             -CChHHHHHHHhcCCCCCccccCCCCCCC--CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          501 -GSLEDWAADYLSGVQPLQQFVDPTLSSF--DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       501 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                       ...... ......     ...+|.+...  ..+....+.+++.+||+.||++||||.||++.|+++...
T Consensus       235 ~~~~~~~-~~~~~~-----~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         235 DPSVEEM-RKVVCE-----QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             SCCHHHH-HHHHTT-----SCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             cchHHHH-HHHHhc-----cccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHh
Confidence             111111 111111     1112222211  234567799999999999999999999999999998654

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.7e-43  Score=349.20  Aligned_cols=250  Identities=20%  Similarity=0.278  Sum_probs=197.3

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC--cceE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP--FTRM  377 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~--~~~~  377 (592)
                      .+.+.||+|+||.||+|+. .+|+.||||++......+  ....+.|.+|++++++++|||||++++++.....  ...+
T Consensus        10 ~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~--~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~   87 (277)
T d1o6ya_          10 ELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARD--PSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPY   87 (277)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTC--HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred             EEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccC--HHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEE
Confidence            4568899999999999995 579999999987544332  3456689999999999999999999999876542  2368


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  457 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~  457 (592)
                      +|||||++|+|.+++...  ..+++.....|+.|++.||+|||+++  |+||||||+|||++.++..+|+|||.++....
T Consensus        88 lvmE~~~g~~L~~~~~~~--~~l~~~~~~~i~~qi~~al~~lH~~~--iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~  163 (277)
T d1o6ya_          88 IVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQNG--IIHRDVKPANIMISATNAVKVMDFGIARAIAD  163 (277)
T ss_dssp             EEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEETTSCEEECCCTTCEECC-
T ss_pred             EEEECCCCCEehhhhccc--CCCCHHHHHHHHHHHHHHHHHHHhCC--ccCccccCcccccCccccceeehhhhhhhhcc
Confidence            999999999999888643  46899999999999999999999999  99999999999999999999999998765422


Q ss_pred             h------------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          458 A------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       458 ~------------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      .            +..+.+||......++.++|||||||++|||+||+.||.  .....+................    
T Consensus       164 ~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~--~~~~~~~~~~~~~~~~~~~~~~----  237 (277)
T d1o6ya_         164 SGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT--GDSPVSVAYQHVREDPIPPSAR----  237 (277)
T ss_dssp             ---------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC--CSSHHHHHHHHHHCCCCCGGGT----
T ss_pred             ccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCC--CcCHHHHHHHHHhcCCCCCchh----
Confidence            1            123334444444458899999999999999999999994  3444455555544422221111    


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHhhh
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRP-TMRDIAAILREIT  565 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RP-s~~ev~~~L~~i~  565 (592)
                         ....+.++.+++.+||+.||++|| |++++.+.|.++.
T Consensus       238 ---~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~  275 (277)
T d1o6ya_         238 ---HEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH  275 (277)
T ss_dssp             ---SSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             ---ccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHh
Confidence               122345789999999999999999 8999999998875

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.5e-43  Score=348.19  Aligned_cols=244  Identities=21%  Similarity=0.320  Sum_probs=191.3

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCc----hhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCc
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWP----KNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPF  374 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~----~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~  374 (592)
                      ++.+.||+|+||+||+|+. .+|+.+|||++.........    ....+.+.+|+.++++++ |||||++++++.+.+  
T Consensus         6 ~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~--   83 (277)
T d1phka_           6 EPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNT--   83 (277)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS--
T ss_pred             EEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccCc--
Confidence            3568899999999999996 57899999998765433221    223456889999999997 999999999999877  


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..++|||||++|+|.++++..  ..+++..+..++.||+.||+|||+++  |+||||||+|||++.++.+||+|||+++.
T Consensus        84 ~~~ivmE~~~~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~~lH~~~--ivHrDlkp~Nill~~~~~~kl~DFG~a~~  159 (277)
T d1phka_          84 FFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKLN--IVHRDLKPENILLDDDMNIKLTDFGFSCQ  159 (277)
T ss_dssp             EEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             ceEEEEEcCCCchHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHcC--CcccccccceEEEcCCCCeEEccchheeE
Confidence            789999999999999999743  46899999999999999999999999  99999999999999999999999999987


Q ss_pred             hhhhhh--------hhcccccC------CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccc
Q 007711          455 IAMAEM--------AATSKKLS------SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       455 ~~~~~~--------~~~~~~~~------~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  520 (592)
                      ......        .+.+++..      ..+.++.++||||+||++|||+||+.||..  ....+.......+.....  
T Consensus       160 ~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~--~~~~~~~~~i~~~~~~~~--  235 (277)
T d1phka_         160 LDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWH--RKQMLMLRMIMSGNYQFG--  235 (277)
T ss_dssp             CCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCC--
T ss_pred             ccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCC--CCHHHHHHHHHhCCCCCC--
Confidence            643211        11222211      233468899999999999999999999953  334443444444322111  


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       .    ......++++.+++.+||+.||++|||++|+++
T Consensus       236 -~----~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         236 -S----PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             -T----TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             -C----cccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence             1    112234467999999999999999999999864

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-43  Score=353.51  Aligned_cols=237  Identities=17%  Similarity=0.240  Sum_probs=190.4

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||+||+|+. .+|+.||||++.......  ....+.+.+|+.+|++++|||||++++++.+.+  ..++||
T Consensus         8 i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~ivm   83 (316)
T d1fota_           8 ILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVR--LKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQ--QIFMIM   83 (316)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccC--HHHHHHHHHHHHHHHhccCcChhheeeeEeeCC--eeeeEe
Confidence            458899999999999996 468999999986432211  123567999999999999999999999999877  789999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      |||++|+|..++..  ...+++.....++.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++.......
T Consensus        84 E~~~gg~l~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH~~~--iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~  159 (316)
T d1fota_          84 DYIEGGELFSLLRK--SQRFPNPVAKFYAAEVCLALEYLHSKD--IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTY  159 (316)
T ss_dssp             CCCCSCBHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEECTTSCEEECCCSSCEECSSCBC
T ss_pred             eecCCccccccccc--cccccccHHHHHHHHHHHhhhhhccCc--EEccccCchheeEcCCCCEEEecCccceEeccccc
Confidence            99999999988863  346788888899999999999999999  99999999999999999999999999987643322


Q ss_pred             ------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 007711          461 ------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  534 (592)
Q Consensus       461 ------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (592)
                            .+.+||......++.++|||||||++|||+||+.||.  ..+..+.......+....           +...+.
T Consensus       160 ~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~--~~~~~~~~~~i~~~~~~~-----------p~~~s~  226 (316)
T d1fota_         160 TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFY--DSNTMKTYEKILNAELRF-----------PPFFNE  226 (316)
T ss_dssp             CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTC--CSSHHHHHHHHHHCCCCC-----------CTTSCH
T ss_pred             cccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCC--CcCHHHHHHHHHcCCCCC-----------CCCCCH
Confidence                  2334444444457899999999999999999999994  344555555554442211           222335


Q ss_pred             HHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          535 TLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       535 ~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      .+.+++.+||+.||.+|+     |++|+++
T Consensus       227 ~~~~li~~~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         227 DVKDLLSRLITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             HHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence            688999999999999996     8888875

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-43  Score=353.07  Aligned_cols=248  Identities=17%  Similarity=0.173  Sum_probs=179.4

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEee
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  382 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~Ey  382 (592)
                      ++||+|+||+||+|+. .+|+.||||++.............+.+.+|+++|++++|||||++++++...+  ..++||||
T Consensus         4 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~--~~~ivmE~   81 (299)
T d1ua2a_           4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS--NISLVFDF   81 (299)
T ss_dssp             EEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT--CCEEEEEC
T ss_pred             eEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCC--ceeehhhh
Confidence            5799999999999996 46899999998654433222223457899999999999999999999999887  67999999


Q ss_pred             CCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh---
Q 007711          383 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---  459 (592)
Q Consensus       383 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~---  459 (592)
                      ++++++..+..  ....+++..+..++.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++......   
T Consensus        82 ~~~~~~~~~~~--~~~~l~~~~~~~~~~qil~aL~~lH~~~--iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~  157 (299)
T d1ua2a_          82 METDLEVIIKD--NSLVLTPSHIKAYMLMTLQGLEYLHQHW--ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAY  157 (299)
T ss_dssp             CSEEHHHHHTT--CCSSCCSSHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCC
T ss_pred             hcchHHhhhhh--cccCCCHHHHHHHHHHHHHHHHHhhccc--eecccCCcceEEecCCCccccccCccccccCCCcccc
Confidence            99887766654  3456888889999999999999999999  9999999999999999999999999998764321   


Q ss_pred             ------hhhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC-----CCccc------c
Q 007711          460 ------MAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----PLQQF------V  521 (592)
Q Consensus       460 ------~~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----~~~~~------~  521 (592)
                            ..+.++|.. ....++.++|||||||++|||+||+.||..  .+..+..........     .....      .
T Consensus       158 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~--~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~  235 (299)
T d1ua2a_         158 THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPG--DSDLDQLTRIFETLGTPTEEQWPDMCSLPDYV  235 (299)
T ss_dssp             CCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCC
T ss_pred             cceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCC--CCHHHHHHHHHHhcCCCChhhccchhccchhh
Confidence                  112223322 223468899999999999999999999943  223332222221100     00000      0


Q ss_pred             C-CCCCCCC-----HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 D-PTLSSFD-----EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ~-~~~~~~~-----~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      . ......+     ....+.+.+++.+||+.||++|||++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         236 TFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             CCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             hhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence            0 0000111     122457899999999999999999999875

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-42  Score=351.47  Aligned_cols=238  Identities=18%  Similarity=0.233  Sum_probs=192.0

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||+|+||.||+|+. .+|+.||+|++.......  ....+.+.+|+++|++++|||||++++++.+.+  ..++|
T Consensus         8 ~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~--~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~--~~~iv   83 (337)
T d1o6la_           8 DYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIA--KDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD--RLCFV   83 (337)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccC--HHHHHHHHHHHHHHHhCCCCCEEEEEeeecccc--ccccc
Confidence            3458899999999999996 578999999987543211  123567889999999999999999999999887  78999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh-
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  458 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~-  458 (592)
                      ||||++|+|.+++...  ..++......++.|++.||+|||+++  |+||||||+|||+++++.+||+|||+++..... 
T Consensus        84 ~ey~~gg~L~~~~~~~--~~~~e~~~~~~~~qil~al~ylH~~~--iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~  159 (337)
T d1o6la_          84 MEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSRD--VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG  159 (337)
T ss_dssp             EECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT
T ss_pred             eeccCCCchhhhhhcc--cCCcHHHHHHHHHHHhhhhhhhhhcC--ccccccCHHHeEecCCCCEEEeecccccccccCC
Confidence            9999999999998743  46888899999999999999999999  999999999999999999999999999865321 


Q ss_pred             --------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 007711          459 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  530 (592)
Q Consensus       459 --------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (592)
                              +..+.+||......++.++||||+||++|||+||+.||.  ..+..+.......+...           ++.
T Consensus       160 ~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~--~~~~~~~~~~i~~~~~~-----------~p~  226 (337)
T d1o6la_         160 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY--NQDHERLFELILMEEIR-----------FPR  226 (337)
T ss_dssp             CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCC-----------CCT
T ss_pred             cccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCC--CcCHHHHHHHHhcCCCC-----------CCc
Confidence                    123444555555568999999999999999999999994  34445555444443221           122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 007711          531 EQLETLGELIKSCVRADPEKRPT-----MRDIAA  559 (592)
Q Consensus       531 ~~~~~l~~l~~~Cl~~dP~~RPs-----~~ev~~  559 (592)
                      ..+.++.+++.+||+.||++||+     ++|+++
T Consensus       227 ~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         227 TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             cCCHHHHHHHHhhccCCchhhcccccccHHHHHc
Confidence            33456889999999999999995     777765

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-42  Score=354.52  Aligned_cols=238  Identities=18%  Similarity=0.240  Sum_probs=190.5

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      ++.+.||+|+||.||+|+. .+|+.||||++.......  ....+.+.+|+++|+.++|||||++++++....  ..++|
T Consensus        44 ~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--~~~~v  119 (350)
T d1rdqe_          44 DRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVK--LKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMV  119 (350)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccC--HHHHHHHHHHHHHHHHcCCCcEeeccccccccc--ccccc
Confidence            3457899999999999996 469999999986433211  123467899999999999999999999998877  67999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  459 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~  459 (592)
                      +||+.+|+|.+++...  ..+++.....++.||+.||.|||+++  |+||||||+|||++.++.+||+|||+++......
T Consensus       120 ~e~~~~g~l~~~l~~~--~~l~e~~~~~i~~qi~~aL~yLH~~~--iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~  195 (350)
T d1rdqe_         120 MEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSLD--LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT  195 (350)
T ss_dssp             EECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECSSCB
T ss_pred             cccccccchhhhHhhc--CCCCHHHHHHHHHHHHHHHHHHHhCC--EecCcCCHHHcccCCCCCEEeeeceeeeeccccc
Confidence            9999999999988643  46899999999999999999999999  9999999999999999999999999998764322


Q ss_pred             ------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 007711          460 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  533 (592)
Q Consensus       460 ------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (592)
                            ..+.+||......++.++|||||||++|||+||+.||.  ..+..........+...           .+...+
T Consensus       196 ~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~--~~~~~~~~~~i~~~~~~-----------~p~~~s  262 (350)
T d1rdqe_         196 WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFF--ADQPIQIYEKIVSGKVR-----------FPSHFS  262 (350)
T ss_dssp             CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCC-----------CCTTCC
T ss_pred             ccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCC--CcCHHHHHHHHhcCCCC-----------CCccCC
Confidence                  23334444444457899999999999999999999994  33444444444433211           122234


Q ss_pred             HHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 007711          534 ETLGELIKSCVRADPEKRP-----TMRDIAA  559 (592)
Q Consensus       534 ~~l~~l~~~Cl~~dP~~RP-----s~~ev~~  559 (592)
                      ..+.+++.+||+.||.+|+     |++|+++
T Consensus       263 ~~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         263 SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             HHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence            5788999999999999994     8888875

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-42  Score=350.15  Aligned_cols=239  Identities=15%  Similarity=0.221  Sum_probs=188.2

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  379 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv  379 (592)
                      .+.+.||+|+||+||+|... +|+.||||.+....      .....+.+|+++|++++|||||++++++.+.+  ..++|
T Consensus         8 ~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~------~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~--~~~lv   79 (321)
T d1tkia_           8 MIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG------TDQVLVKKEISILNIARHRNILHLHESFESME--ELVMI   79 (321)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT------HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETT--EEEEE
T ss_pred             EEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc------ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECC--EEEEE
Confidence            45688999999999999964 68899999986432      22456889999999999999999999998877  78999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC--CceEEecCCcchhhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED--YAAKLSDLSFWNEIAM  457 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~--~~~ki~DfGla~~~~~  457 (592)
                      ||||++|+|.+++... ...+++.....|+.|++.||+|||+.+  |+||||||+|||++.+  ..+||+|||+++....
T Consensus        80 mE~~~gg~L~~~i~~~-~~~l~e~~~~~i~~qi~~al~yLH~~~--iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~  156 (321)
T d1tkia_          80 FEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHSHN--IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP  156 (321)
T ss_dssp             ECCCCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSSSCCCEEECCCTTCEECCT
T ss_pred             EecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHcC--CCcccccccceeecCCCceEEEEcccchhhcccc
Confidence            9999999999998643 346899999999999999999999999  9999999999999854  5899999999987643


Q ss_pred             hhh--------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          458 AEM--------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       458 ~~~--------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                      ...        .+.+++......++.++|||||||++|||+||+.||.  .....+...........+.....+      
T Consensus       157 ~~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~--~~~~~~~~~~i~~~~~~~~~~~~~------  228 (321)
T d1tkia_         157 GDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFL--AETNQQIIENIMNAEYTFDEEAFK------  228 (321)
T ss_dssp             TCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTC--CSSHHHHHHHHHHTCCCCCHHHHT------
T ss_pred             CCcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCC--CCCHHHHHHHHHhCCCCCChhhcc------
Confidence            221        1122222233347889999999999999999999994  334455555554443222211111      


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                       ..+.++.+++.+||+.||++|||+.|+++
T Consensus       229 -~~s~~~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         229 -EISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             -TSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             -CCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence             12356889999999999999999999986

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-42  Score=350.52  Aligned_cols=237  Identities=19%  Similarity=0.241  Sum_probs=186.5

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHh-cCCCCceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLS-KVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~-~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      .+.+.||+|+||+||+|+.. +|+.||||++.......  ....+.+..|..++. .++|||||++++++.+.+  ..++
T Consensus         5 ~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~--~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~--~~yi   80 (320)
T d1xjda_           5 ILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLM--DDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE--NLFF   80 (320)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS--EEEE
T ss_pred             EEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccC--hHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCC--ceeE
Confidence            45689999999999999964 68999999986432111  112345667777665 689999999999999887  7899


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |||||++|+|.++++..  ..++......++.||+.||+|||+++  |+||||||+|||+++++.+||+|||+++.....
T Consensus        81 vmEy~~~g~L~~~i~~~--~~~~e~~~~~~~~qi~~al~ylH~~~--iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~  156 (320)
T d1xjda_          81 VMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHSKG--IVYRDLKLDNILLDKDGHIKIADFGMCKENMLG  156 (320)
T ss_dssp             EEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred             EEeecCCCcHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCC--eeeccCcccceeecCCCceeccccchhhhcccc
Confidence            99999999999998743  45788999999999999999999999  999999999999999999999999999865321


Q ss_pred             ---------hhhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          459 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       459 ---------~~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                               ...+.+|+......++.++|||||||++|||+||+.||.  +.+..+.......+...           ++
T Consensus       157 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~--~~~~~~~~~~i~~~~~~-----------~p  223 (320)
T d1xjda_         157 DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFH--GQDEEELFHSIRMDNPF-----------YP  223 (320)
T ss_dssp             TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCC-----------CC
T ss_pred             cccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCC--CCCHHHHHHHHHcCCCC-----------CC
Confidence                     122334444455568999999999999999999999994  33444444444333211           12


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHH-HHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPTMR-DIA  558 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs~~-ev~  558 (592)
                      ...+.++.+++.+||+.||++||++. |++
T Consensus       224 ~~~s~~~~dli~~~L~~dP~~R~s~~~~l~  253 (320)
T d1xjda_         224 RWLEKEAKDLLVKLFVREPEKRLGVRGDIR  253 (320)
T ss_dssp             TTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             ccCCHHHHHHHHHhcccCCCCCcCHHHHHH
Confidence            23345789999999999999999995 664

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.6e-42  Score=353.10  Aligned_cols=242  Identities=15%  Similarity=0.204  Sum_probs=184.0

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCC-CchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKD-WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~-~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      ++.+.||+|+||.||+|+.. +|..||||++....... ...........|+++++.++|||||++++++...+  ..++
T Consensus         7 ~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~--~~~i   84 (364)
T d1omwa3           7 SVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD--KLSF   84 (364)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS--EEEE
T ss_pred             eeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECC--EEEE
Confidence            34588999999999999964 68999999986433211 01111222334577788889999999999998877  7899


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      |||||++|+|.+++...  ..+++.....++.+|+.||+|||+++  |+||||||+|||+++++.+||+|||+++.....
T Consensus        85 vmE~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~ylH~~~--iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~  160 (364)
T d1omwa3          85 ILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNRF--VVYRDLKPANILLDEHGHVRISDLGLACDFSKK  160 (364)
T ss_dssp             EECCCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECSSSCEEECCCTTCEECSSS
T ss_pred             EEEecCCCcHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHCC--ccceeeccceeEEcCCCcEEEeeeceeeecCCC
Confidence            99999999999998643  46789999999999999999999999  999999999999999999999999999866432


Q ss_pred             -------hhhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCC-hHHHHHHHhcCCCCCccccCCCCCCCC
Q 007711          459 -------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDWAADYLSGVQPLQQFVDPTLSSFD  529 (592)
Q Consensus       459 -------~~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (592)
                             +..+.+||... ...++.++|||||||++|||+||+.||...... ............           ...+
T Consensus       161 ~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~-----------~~~~  229 (364)
T d1omwa3         161 KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMA-----------VELP  229 (364)
T ss_dssp             CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCC-----------CCCC
T ss_pred             cccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCC-----------CCCC
Confidence                   23334444432 345789999999999999999999999654432 222222111110           0112


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 007711          530 EEQLETLGELIKSCVRADPEKRPT-----MRDIAA  559 (592)
Q Consensus       530 ~~~~~~l~~l~~~Cl~~dP~~RPs-----~~ev~~  559 (592)
                      ...+.++.+++.+||+.||++|||     ++|+++
T Consensus       230 ~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         230 DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             SSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred             CCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHc
Confidence            233457899999999999999999     677764

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-42  Score=342.87  Aligned_cols=248  Identities=20%  Similarity=0.254  Sum_probs=182.0

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||+||+|+. .+|+.||||++......   ....+++.+|+++|++++|||||++++++.+..  ..++||
T Consensus         6 ~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~---~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~--~~~iv~   80 (298)
T d1gz8a_           6 KVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTET---EGVPSTAIREISLLKELNHPNIVKLLDVIHTEN--KLYLVF   80 (298)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEC----------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             eccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcC---hHHHHHHHHHHHHHHhCCCCcEEEecccccccc--ceeEEE
Confidence            347899999999999996 56899999998654322   123467899999999999999999999999877  789999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+.+ ++.+++.......+++..+..++.|++.||+|||+++  ||||||||+|||++.++.+||+|||+++.......
T Consensus        81 e~~~~-~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~--IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~  157 (298)
T d1gz8a_          81 EFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR--VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR  157 (298)
T ss_dssp             ECCSE-EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSB
T ss_pred             eecCC-chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCC--EEccccCchheeecccCcceeccCCcceeccCCcc
Confidence            99965 5555555555667999999999999999999999999  99999999999999999999999999987643211


Q ss_pred             h---hcccccCCCC-------CCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCC-------
Q 007711          461 A---ATSKKLSSAP-------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP-------  523 (592)
Q Consensus       461 ~---~~~~~~~~~~-------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  523 (592)
                      .   ...+..+.+|       .++.++|||||||++|||+||+.||...  +..+.............+...+       
T Consensus       158 ~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  235 (298)
T d1gz8a_         158 TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGD--SEIDQLFRIFRTLGTPDEVVWPGVTSMPD  235 (298)
T ss_dssp             CTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGSTT
T ss_pred             cceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCC--CHHHHHHHHHHhcCCCchhhccccccccc
Confidence            1   1111222333       3578999999999999999999999533  2222222221110000000000       


Q ss_pred             ---CC---CCC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          524 ---TL---SSF-----DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       524 ---~~---~~~-----~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                         ..   ...     .......+.+++.+||+.||++|||++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~  282 (298)
T d1gz8a_         236 YKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA  282 (298)
T ss_dssp             CCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence               00   000     1122357889999999999999999999987

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-42  Score=346.99  Aligned_cols=237  Identities=17%  Similarity=0.255  Sum_probs=179.1

Q ss_pred             cccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC-CCCceeeeeEEEecC--CCcceEEE
Q 007711          304 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEE--EPFTRMMV  379 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~--~~~~~~lv  379 (592)
                      +.||+|+||.||+|+. .+++.||||++..          ...+.+|++++.++ +|||||++++++...  .....++|
T Consensus        18 ~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~----------~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~iv   87 (335)
T d2ozaa1          18 QVLGLGINGKVLQIFNKRTQEKFALKMLQD----------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIV   87 (335)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEC----------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             EEeeeccCeEEEEEEECCCCCEEEEEEECC----------cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEE
Confidence            5699999999999996 5689999998742          13567899987654 899999999998642  21257999


Q ss_pred             EeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC---CCceEEecCCcchhhh
Q 007711          380 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEIA  456 (592)
Q Consensus       380 ~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~---~~~~ki~DfGla~~~~  456 (592)
                      ||||++|+|.+++.......+++.....|+.|++.||+|||+.+  |+||||||+|||+++   ++.+||+|||+++...
T Consensus        88 mEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~--iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~  165 (335)
T d2ozaa1          88 MECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  165 (335)
T ss_dssp             EECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEESCSSTTCCEEECCCTTCEECC
T ss_pred             EECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcC--Cccccccccccccccccccccccccccceeeecc
Confidence            99999999999997655567999999999999999999999999  999999999999985   4579999999998664


Q ss_pred             hhhh--hhcccccCCCCC------CCCCCcchhhHHHHHHHHhCCCcccCCCCC-hHHHHHHHhcCCCCCccccCCCCC-
Q 007711          457 MAEM--AATSKKLSSAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDWAADYLSGVQPLQQFVDPTLS-  526 (592)
Q Consensus       457 ~~~~--~~~~~~~~~~~~------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-  526 (592)
                      ....  ....+..+++||      ++.++|||||||++|||+||+.||...... ...........       ...... 
T Consensus       166 ~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~-------~~~~~~~  238 (335)
T d2ozaa1         166 SHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRM-------GQYEFPN  238 (335)
T ss_dssp             CCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCS-------CSSSCCT
T ss_pred             CCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhc-------CCCCCCC
Confidence            3221  112234455555      688999999999999999999999643321 11111100000       000011 


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          527 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       527 ~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ......+.++.+++.+||+.||++|||+.|+++
T Consensus       239 ~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  271 (335)
T d2ozaa1         239 PEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  271 (335)
T ss_dssp             THHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             cccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            111234567999999999999999999999976

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.8e-41  Score=337.76  Aligned_cols=247  Identities=17%  Similarity=0.203  Sum_probs=184.4

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEEe
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      +.+.||+|+||+||+|+.++|+.||||++......   ....+.|.+|+++|++++|||||++++++...+  ..++++|
T Consensus         6 ~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~---~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--~~~i~~e   80 (286)
T d1ob3a_           6 GLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKED---EGIPSTTIREISILKELKHSNIVKLYDVIHTKK--RLVLVFE   80 (286)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGG---GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS--CEEEEEE
T ss_pred             eccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcC---hHHHHHHHHHHHHHHhCCCCcEEeeeeecccCC--ceeEEEE
Confidence            45789999999999999999999999998654322   223467999999999999999999999999887  6799999


Q ss_pred             eCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh-
Q 007711          382 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-  460 (592)
Q Consensus       382 y~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~-  460 (592)
                      |+.++.+..+..  ....++......++.||+.||+|||+.+  |+||||||+|||++.++.+|++|||.+........ 
T Consensus        81 ~~~~~~~~~~~~--~~~~l~~~~~~~i~~qi~~~L~~LH~~~--IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~  156 (286)
T d1ob3a_          81 HLDQDLKKLLDV--CEGGLESVTAKSFLLQLLNGIAYCHDRR--VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK  156 (286)
T ss_dssp             CCSEEHHHHHHT--STTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----
T ss_pred             eehhhhHHHHHh--hcCCcchhhhHHHHHHHHHHHHHhccCc--EEecCCCCceeeEcCCCCEEecccccceecccCccc
Confidence            998877666654  3467999999999999999999999998  99999999999999999999999999987643221 


Q ss_pred             --------hhccccc-CCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC--C---Cc---ccc--
Q 007711          461 --------AATSKKL-SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ--P---LQ---QFV--  521 (592)
Q Consensus       461 --------~~~~~~~-~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~--~---~~---~~~--  521 (592)
                              .+.+++. .....++.++|||||||++|||+||+.||...  ...+..........  .   ..   ...  
T Consensus       157 ~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  234 (286)
T d1ob3a_         157 YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV--SEADQLMRIFRILGTPNSKNWPNVTELPKY  234 (286)
T ss_dssp             -----CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred             cceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCC--CHHHHHHHHHHhhCCCChhhccchhhhhhc
Confidence                    1111221 12334689999999999999999999999532  22222222111000  0   00   000  


Q ss_pred             CCCC--------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          522 DPTL--------SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       522 ~~~~--------~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ....        ..........+.+++.+||+.||++|||++|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         235 DPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             CTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            0000        0111223457889999999999999999999874

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-41  Score=335.88  Aligned_cols=235  Identities=20%  Similarity=0.364  Sum_probs=178.8

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCch-hHHHHHHHHHHHHhcCC--CCceeeeeEEEecCCCcc
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPK-NLEVQFRKKIDTLSKVN--HKNFVNLIGFCEEEEPFT  375 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~-~~~~~f~~e~~~l~~l~--H~niv~l~g~~~~~~~~~  375 (592)
                      +.+.+.||+|+||.||+|+. .+|..||||++......+... ....++.+|+.+|++++  |||||++++++.+.+  .
T Consensus         6 Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~--~   83 (273)
T d1xwsa_           6 YQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD--S   83 (273)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS--E
T ss_pred             EEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCC--e
Confidence            34568899999999999996 468999999987543322111 11234678999999986  999999999998877  7


Q ss_pred             eEEEEeeCCC-CCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC-CCceEEecCCcch
Q 007711          376 RMMVFEYAPN-GTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWN  453 (592)
Q Consensus       376 ~~lv~Ey~~~-gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~-~~~~ki~DfGla~  453 (592)
                      .++||||+.+ +++.+++..  ...+++.....++.|++.||+|||+++  |+||||||+|||++. ++.+||+|||+++
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~--~~~l~e~~~~~~~~qi~~al~~lH~~~--iiHrDiKp~NIll~~~~~~vkl~DFG~a~  159 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITE--RGALQEELARSFFWQVLEAVRHCHNCG--VLHRDIKDENILIDLNRGELKLIDFGSGA  159 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EEEEEEeccCcchHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC--CccccCcccceEEecCCCeEEECccccce
Confidence            7999999976 577777753  356899999999999999999999999  999999999999985 4799999999998


Q ss_pred             hhhhhhhh-hcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 007711          454 EIAMAEMA-ATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  525 (592)
Q Consensus       454 ~~~~~~~~-~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (592)
                      ........ ...+..+++||       ++.++|||||||++|||+||+.||...    .    ........    .    
T Consensus       160 ~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~----~----~i~~~~~~----~----  223 (273)
T d1xwsa_         160 LLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD----E----EIIRGQVF----F----  223 (273)
T ss_dssp             ECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----H----HHHHCCCC----C----
T ss_pred             ecccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCc----h----HHhhcccC----C----
Confidence            65422111 11123344443       356789999999999999999999421    1    11222111    1    


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          526 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       526 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                         +...+.++.+++.+||+.||++|||++|+++
T Consensus       224 ---~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         224 ---RQRVSSECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             ---SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ---CCCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence               1122357899999999999999999999875

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-39  Score=326.22  Aligned_cols=251  Identities=17%  Similarity=0.211  Sum_probs=178.8

Q ss_pred             hhhcccCcCCCeEEEEEEe-CC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcC---CCCceeeeeEEEecC---C
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV---NHKNFVNLIGFCEEE---E  372 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~-~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l---~H~niv~l~g~~~~~---~  372 (592)
                      ++.+.||+|+||+||+|+. .+ ++.||||++........   ....+.+|+++|+.+   +||||++++++|...   .
T Consensus        10 ~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~---~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~   86 (305)
T d1blxa_          10 ECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEG---MPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   86 (305)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTS---CBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSS
T ss_pred             EEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccch---HHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccccc
Confidence            3457899999999999996 34 56799999876543321   122355677666554   899999999998632   1


Q ss_pred             CcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcc
Q 007711          373 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  452 (592)
Q Consensus       373 ~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla  452 (592)
                      ....++++||+++|.+.... ......+++.....++.|++.||+|||+++  |+||||||+|||+++++.+||+|||++
T Consensus        87 ~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~--ivHrDiKp~NILi~~~~~~kl~dfg~~  163 (305)
T d1blxa_          87 ETKLTLVFEHVDQDLTTYLD-KVPEPGVPTETIKDMMFQLLRGLDFLHSHR--VVHRDLKPQNILVTSSGQIKLADFGLA  163 (305)
T ss_dssp             EEEEEEEEECCSCBHHHHHH-HSCTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECSCCSC
T ss_pred             CceEEEEEEeccCCchhhhh-hccCCCCCHHHHHHHHHHHHHHHHHHHhCC--EEecCCCccEEEEcCCCCeeecchhhh
Confidence            22568999999887665443 344567899999999999999999999999  999999999999999999999999998


Q ss_pred             hhhhhhhh--------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCC---------
Q 007711          453 NEIAMAEM--------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ---------  515 (592)
Q Consensus       453 ~~~~~~~~--------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~---------  515 (592)
                      +.......        .+.+||......++.++||||+||++|||+||+.||...  +..+..........         
T Consensus       164 ~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~  241 (305)
T d1blxa_         164 RIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS--SDVDQLGKILDVIGLPGEEDWPR  241 (305)
T ss_dssp             CCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCGGGSCT
T ss_pred             hhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCC--CHHHHHHHHHHhhCCCchhcccc
Confidence            86543322        222333333334799999999999999999999999533  33332222211100         


Q ss_pred             --CCc-ccc----CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          516 --PLQ-QFV----DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       516 --~~~-~~~----~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                        ... ...    ......+.....+.+.+|+.+||+.||++|||+.|+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~  292 (305)
T d1blxa_         242 DVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  292 (305)
T ss_dssp             TCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence              000 000    00011122233467889999999999999999999875

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-39  Score=332.81  Aligned_cols=254  Identities=16%  Similarity=0.220  Sum_probs=180.4

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cc
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FT  375 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~  375 (592)
                      .+.+.||+|+||+||+|.. .+|+.||||++.....   .....+.+.+|+++|++++|||||+++++|...+.    ..
T Consensus        21 ~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~---~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~   97 (346)
T d1cm8a_          21 RDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ---SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTD   97 (346)
T ss_dssp             EEEEEC------CEEEEEETTTCCEEEEEECSSTTS---SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCC
T ss_pred             EEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhc---ChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccce
Confidence            3457899999999999996 4699999999864322   23456788999999999999999999999976542    13


Q ss_pred             eEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhh
Q 007711          376 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  455 (592)
Q Consensus       376 ~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~  455 (592)
                      .++||||+ +++|..+.+   ...+++.....++.|++.||+|||+++  |+||||||+|||++.++.+|++|||+++..
T Consensus        98 ~~lv~e~~-~~~l~~~~~---~~~l~~~~~~~~~~qi~~aL~~LH~~~--IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~  171 (346)
T d1cm8a_          98 FYLVMPFM-GTDLGKLMK---HEKLGEDRIQFLVYQMLKGLRYIHAAG--IIHRDLKPGNLAVNEDCELKILDFGLARQA  171 (346)
T ss_dssp             CEEEEECC-SEEHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEecc-cccHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhCC--CcccccCcchhhcccccccccccccceecc
Confidence            58999999 556766654   246899999999999999999999999  999999999999999999999999999876


Q ss_pred             hhhhhhhcccccCCCCC-------CCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCC------------
Q 007711          456 AMAEMAATSKKLSSAPS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP------------  516 (592)
Q Consensus       456 ~~~~~~~~~~~~~~~~~-------~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~------------  516 (592)
                      .........+..+++||       ++.++||||+||++|||++|+.||...+  ..+...........            
T Consensus       172 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (346)
T d1cm8a_         172 DSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSD--HLDQLKEIMKVTGTPPAEFVQRLQSD  249 (346)
T ss_dssp             CSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHHHCCCCHHHHHTCSCH
T ss_pred             CCccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCC--hHHHHHHHHhccCCCcHHHHhhhcch
Confidence            53322222223344443       6889999999999999999999995432  11111111100000            


Q ss_pred             --------CccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhhh
Q 007711          517 --------LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI--LREIT  565 (592)
Q Consensus       517 --------~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~--L~~i~  565 (592)
                              ...................+.+|+.+||+.||++|||++|+++.  ++++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~  308 (346)
T d1cm8a_         250 EAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLH  308 (346)
T ss_dssp             HHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC
T ss_pred             hhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCC
Confidence                    00001111111122233568899999999999999999999873  55544

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-39  Score=322.51  Aligned_cols=248  Identities=16%  Similarity=0.201  Sum_probs=187.2

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEEEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  380 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~lv~  380 (592)
                      +.+.||+|+||+||+|+. .++..||||+++.....   .....++.+|+.+|+.++||||+++++++....  ..++|+
T Consensus         6 ~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~---~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~--~~~iv~   80 (292)
T d1unla_           6 KLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD---EGVPSSALREICLLKELKHKNIVRLHDVLHSDK--KLTLVF   80 (292)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSS---TTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             eeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCC---hHHHHHHHHHHHHHHhcCcCCEEeecccccccc--ceeEEe
Confidence            457899999999999996 57889999998654322   345678999999999999999999999999887  679999


Q ss_pred             eeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhhhh
Q 007711          381 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  460 (592)
Q Consensus       381 Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~~~  460 (592)
                      ||+.+++|..++.  ....+++..+..++.|++.||+|||+++  |+||||||+|||++.++.+||+|||.++.......
T Consensus        81 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~q~~~aL~~lH~~~--IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~  156 (292)
T d1unla_          81 EFCDQDLKKYFDS--CNGDLDPEIVKSFLFQLLKGLGFCHSRN--VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR  156 (292)
T ss_dssp             ECCSEEHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTCCEEECCCTTCEECCSCCS
T ss_pred             eeccccccccccc--cccccchhHHHHHHHHHHHHHHHhhcCC--EeeecccCcccccccCCceeeeecchhhcccCCCc
Confidence            9999999887765  3457889999999999999999999999  99999999999999999999999999987643221


Q ss_pred             ---------hhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCC--------ccccC
Q 007711          461 ---------AATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL--------QQFVD  522 (592)
Q Consensus       461 ---------~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~--------~~~~~  522 (592)
                               .+.+++.. ....++.++|||||||++|||+||+.||.. ..+..+............        ....+
T Consensus       157 ~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (292)
T d1unla_         157 CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP-GNDVDDQLKRIFRLLGTPTEEQWPSMTKLPD  235 (292)
T ss_dssp             CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCC-CSSHHHHHHHHHHHHCCCCTTTCTTGGGSTT
T ss_pred             cceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCC-CCCHHHHHHHHHhhcCCCChhhhhhhhhccc
Confidence                     11122222 233468899999999999999999999743 223333332221110000        00000


Q ss_pred             ----------CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          523 ----------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       523 ----------~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                                .............+.+++.+|++.||.+|||++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         236 YKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             ccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                      0011122333467889999999999999999999865

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-39  Score=332.58  Aligned_cols=251  Identities=19%  Similarity=0.225  Sum_probs=178.4

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC----Ccce
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE----PFTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~----~~~~  376 (592)
                      ..++||+|+||+||+|+.. +|+.||||++.....         .+.+|+++|++++|+||+++++++....    ....
T Consensus        24 ~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~---------~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~   94 (350)
T d1q5ka_          24 DTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR---------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL   94 (350)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS---------SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEE
T ss_pred             eeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch---------HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEE
Confidence            3478999999999999974 689999999864332         1346999999999999999999986432    2246


Q ss_pred             EEEEeeCCCCCchhhccc-cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCC-ceEEecCCcchh
Q 007711          377 MMVFEYAPNGTLFEHIHI-KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNE  454 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~-~~ki~DfGla~~  454 (592)
                      ++|||||++|.+..+.+. .....+++..+..++.|++.||+|||+++  |+||||||+|||++.++ .+||+|||+++.
T Consensus        95 ~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~--IiHrDiKp~NILl~~~~~~~kl~DFG~a~~  172 (350)
T d1q5ka_          95 NLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG--ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ  172 (350)
T ss_dssp             EEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEECTTTCCEEECCCTTCEE
T ss_pred             EEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcC--CcccCCCcceEEEecCCCceeEecccchhh
Confidence            899999987644433322 24567999999999999999999999999  99999999999999775 899999999986


Q ss_pred             hhhhhh--------hhcccc-cCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHh--------------
Q 007711          455 IAMAEM--------AATSKK-LSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL--------------  511 (592)
Q Consensus       455 ~~~~~~--------~~~~~~-~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~--------------  511 (592)
                      ......        .+.+++ ......++.++||||+||++|||+||+.||....  ..+......              
T Consensus       173 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~--~~~~l~~i~~~~g~~~~~~~~~~  250 (350)
T d1q5ka_         173 LVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS--GVDQLVEIIKVLGTPTREQIREM  250 (350)
T ss_dssp             CCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSS--HHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             ccCCcccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCC--HHHHHHHHHHHhCCChHHhhhhh
Confidence            643221        111222 1223457899999999999999999999995332  222211111              


Q ss_pred             -cCC--CCCccccCCC-CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHhhh
Q 007711          512 -SGV--QPLQQFVDPT-LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREIT  565 (592)
Q Consensus       512 -~~~--~~~~~~~~~~-~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~--~L~~i~  565 (592)
                       ...  .......... ...........+.+|+.+||+.||++|||+.|+++  .++++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         251 NPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  310 (350)
T ss_dssp             CC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             ccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhcccc
Confidence             100  0000000000 00111223456889999999999999999999985  355553

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-39  Score=327.02  Aligned_cols=249  Identities=16%  Similarity=0.202  Sum_probs=179.3

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCCcceEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~l  378 (592)
                      +.+.+.||+|+||.||+|+. .+|+.||||++......       .++..|++++++++|+|++..++.|..... ..++
T Consensus         9 Y~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~-------~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~-~~~i   80 (299)
T d1ckia_           9 YRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH-------PQLHIESKIYKMMQGGVGIPTIRWCGAEGD-YNVM   80 (299)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTS-------CCHHHHHHHHHHSTTSTTCCCEEEEEEETT-EEEE
T ss_pred             EEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccC-------HHHHHHHHHHHHccCCCcccEEEEEEecCC-EEEE
Confidence            34568899999999999996 56899999987654322       247889999999988877766665544332 5689


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEc---CCCceEEecCCcchhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT---EDYAAKLSDLSFWNEI  455 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~---~~~~~ki~DfGla~~~  455 (592)
                      ||||+ +|+|.+.+.. ....+++..+..++.|++.||+|||+++  |+||||||+|||++   .+..+||+|||+++..
T Consensus        81 vme~~-~~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~  156 (299)
T d1ckia_          81 VMELL-GPSLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHSKN--FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKY  156 (299)
T ss_dssp             EEECC-CCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEECCGGGTTCEEECCCSSCEEC
T ss_pred             EEEEc-CCchhhhhhh-ccCCCcHHHHHHHHHHHHHHHHHHHHCC--eeeccCCHhhccccccCCCceeeeeccCcceec
Confidence            99999 4566665542 3467899999999999999999999999  99999999999976   4567999999999876


Q ss_pred             hhhhhh----------hcccccCCCC------CCCCCCcchhhHHHHHHHHhCCCcccCCCCCh-HHHHHHHhcCCCCCc
Q 007711          456 AMAEMA----------ATSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-EDWAADYLSGVQPLQ  518 (592)
Q Consensus       456 ~~~~~~----------~~~~~~~~~~------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~-~~~~~~~~~~~~~~~  518 (592)
                      ......          ...+..+++|      .++.++|||||||++|||+||+.||....... ..........  .. 
T Consensus       157 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~--~~-  233 (299)
T d1ckia_         157 RDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEK--KM-  233 (299)
T ss_dssp             BCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHH--HH-
T ss_pred             cccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcc--cC-
Confidence            432211          0112233443      47899999999999999999999995433211 1111110000  00 


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhC
Q 007711          519 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  566 (592)
Q Consensus       519 ~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~  566 (592)
                         ..........++.++.+++..||+.+|++||++.++.+.|+.+..
T Consensus       234 ---~~~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~  278 (299)
T d1ckia_         234 ---STPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH  278 (299)
T ss_dssp             ---HSCHHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHH
T ss_pred             ---CCChhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHH
Confidence               000000112234578999999999999999999999999998754

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=321.90  Aligned_cols=250  Identities=18%  Similarity=0.205  Sum_probs=177.3

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCC------C
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE------P  373 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------~  373 (592)
                      ++.+.||+|+||+||+|+. .+|+.||||++.......   ...+++.+|+++|++++|+||+++++++....      .
T Consensus        13 ~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~---~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~   89 (318)
T d3blha1          13 EKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE---GFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK   89 (318)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTT---SSCHHHHHHHHHHHHCCCTTBCCEEEEEEC---------
T ss_pred             EEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcch---HHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccC
Confidence            4558899999999999996 578999999986544332   23467889999999999999999999986532      1


Q ss_pred             cceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcch
Q 007711          374 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  453 (592)
Q Consensus       374 ~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~  453 (592)
                      ...++||||++++.+.....  ....++......++.|++.||.|||+++  |+||||||+|||++.++.+||+|||+++
T Consensus        90 ~~~~iv~e~~~~~~~~~~~~--~~~~~~~~~~~~i~~qil~~l~~lH~~~--ivHrDlKp~NILl~~~~~~kl~dfg~~~  165 (318)
T d3blha1          90 GSIYLVFDFCEHDLAGLLSN--VLVKFTLSEIKRVMQMLLNGLYYIHRNK--ILHRDMKAANVLITRDGVLKLADFGLAR  165 (318)
T ss_dssp             -CEEEEEECCCEEHHHHHTC--TTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             ceEEEEEeccCCCccchhhh--cccccccHHHHHHHHHHHHHHHHhccCC--EEecCcCchheeecCCCcEEeeecceee
Confidence            24689999998877655443  3456788889999999999999999999  9999999999999999999999999997


Q ss_pred             hhhhhh-------------hhhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCcc
Q 007711          454 EIAMAE-------------MAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ  519 (592)
Q Consensus       454 ~~~~~~-------------~~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~  519 (592)
                      ......             ..+.+++.. ....++.++|||||||++|||+||+.||...  ...+..............
T Consensus       166 ~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~--~~~~~~~~i~~~~~~~~~  243 (318)
T d3blha1         166 AFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN--TEQHQLALISQLCGSITP  243 (318)
T ss_dssp             ECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCT
T ss_pred             ecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCC--CHHHHHHHHHHhcCCCCh
Confidence            653211             112222222 1224788999999999999999999999532  222222221111111100


Q ss_pred             ccCCCC--------------CCCCH-------HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          520 FVDPTL--------------SSFDE-------EQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       520 ~~~~~~--------------~~~~~-------~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      -.....              .....       .....+.+|+.+||+.||++|||++|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~  304 (318)
T d3blha1         244 EVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  304 (318)
T ss_dssp             TTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             hhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHc
Confidence            000000              00000       11245678999999999999999999875

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-39  Score=329.61  Aligned_cols=247  Identities=15%  Similarity=0.189  Sum_probs=176.8

Q ss_pred             hhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC--cceEE
Q 007711          302 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP--FTRMM  378 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~--~~~~l  378 (592)
                      +.+.||+|+||+||+|+. .+|+.||||++....    .....+++.+|+++|++++||||+++++++.....  ...++
T Consensus        12 ~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~----~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~   87 (345)
T d1pmea_          12 NLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE----HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVY   87 (345)
T ss_dssp             EEEECC---CCCEEEEEETTTCSEEEEEEECCTT----CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEE
T ss_pred             EEEEEeeccCeEEEEEEECCCCcEEEEEEEehhc----ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEE
Confidence            457899999999999985 579999999986432    13446689999999999999999999999975431  12245


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhhhh
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  458 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~~~  458 (592)
                      +++|+.+|+|.+++..   ..+++.....++.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++.....
T Consensus        88 l~~~~~~g~L~~~l~~---~~l~~~~i~~i~~qil~al~yLH~~~--iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~  162 (345)
T d1pmea_          88 LVTHLMGADLYKLLKT---QHLSNDHICYFLYQILRGLKYIHSAN--VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD  162 (345)
T ss_dssp             EEEECCCEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEECCGG
T ss_pred             EEEeecCCchhhhhhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--CcCCCCCcceEEECCCCCEEEcccCceeeccCC
Confidence            6677789999999863   36899999999999999999999999  999999999999999999999999999765332


Q ss_pred             hh------------hhcccccC-CCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhc--CCCCCcc----
Q 007711          459 EM------------AATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS--GVQPLQQ----  519 (592)
Q Consensus       459 ~~------------~~~~~~~~-~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~--~~~~~~~----  519 (592)
                      ..            .+.+++.. ....++.++||||+||++|||+||+.||....  ..+.......  .......    
T Consensus       163 ~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~  240 (345)
T d1pmea_         163 HDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH--YLDQLNHILGILGSPSQEDLNCI  240 (345)
T ss_dssp             GCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCSCCHHHHHTC
T ss_pred             CccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCC--HHHHHHHHhhhccCCChhhhhhh
Confidence            21            12223322 22236788999999999999999999995332  1111111110  0000000    


Q ss_pred             ---------ccCCCCCCC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          520 ---------FVDPTLSSF-----DEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       520 ---------~~~~~~~~~-----~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                               ...+.....     ......++.+++.+||+.||++|||+.|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~  294 (345)
T d1pmea_         241 INLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  294 (345)
T ss_dssp             CCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             hhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                     000000000     1112346889999999999999999999986

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-39  Score=323.48  Aligned_cols=242  Identities=21%  Similarity=0.300  Sum_probs=182.1

Q ss_pred             hhhhcccCcCCCeEEEEEEe----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCC-CceeeeeEEEecCCCc
Q 007711          300 EDFSNVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-KNFVNLIGFCEEEEPF  374 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H-~niv~l~g~~~~~~~~  374 (592)
                      +++.+.||+|+||+||+|+.    .+|+.||||++........ ....+.+.+|+++|++++| |||+++++++....  
T Consensus        26 y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~-~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~--  102 (322)
T d1vzoa_          26 FELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQK-AKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET--  102 (322)
T ss_dssp             EEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEE-ESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT--
T ss_pred             eEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccc-hHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCC--
Confidence            44568999999999999985    2478999999864332110 1123568899999999976 89999999998877  


Q ss_pred             ceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          375 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..++++||+.+|+|.+++...  ..+.......++.|++.|++|||+++  |+||||||+|||++.++.+||+|||+++.
T Consensus       103 ~~~~v~e~~~~~~L~~~i~~~--~~~~e~~~~~~~~Qi~~al~~lH~~~--ivHrDiKp~Nill~~~~~vkL~DFG~a~~  178 (322)
T d1vzoa_         103 KLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHKLG--IIYRDIKLENILLDSNGHVVLTDFGLSKE  178 (322)
T ss_dssp             EEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred             ceeeeeecccccHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHhhcCC--EEeccCCccceeecCCCCEEEeeccchhh
Confidence            789999999999999998643  34677888889999999999999999  99999999999999999999999999986


Q ss_pred             hhhhhhh----hcccccCCCC--------CCCCCCcchhhHHHHHHHHhCCCcccCCC--CChHHHHHHHhcCCCCCccc
Q 007711          455 IAMAEMA----ATSKKLSSAP--------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLEDWAADYLSGVQPLQQF  520 (592)
Q Consensus       455 ~~~~~~~----~~~~~~~~~~--------~~s~ksDVwSfGvvl~El~tG~~P~~~~~--~~~~~~~~~~~~~~~~~~~~  520 (592)
                      +......    ......+.+|        .++.++|||||||+||||+||+.||....  ...............     
T Consensus       179 ~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~-----  253 (322)
T d1vzoa_         179 FVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEP-----  253 (322)
T ss_dssp             CCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCC-----
T ss_pred             hcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCC-----
Confidence            5332211    1111222222        25778999999999999999999996443  222333333222211     


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 007711          521 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPT-----MRDIAA  559 (592)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-----~~ev~~  559 (592)
                            ..+...+.++.+++.+||+.||++|||     ++|+++
T Consensus       254 ------~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         254 ------PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             ------CCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             ------CCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence                  112234467999999999999999994     777764

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=3e-38  Score=320.63  Aligned_cols=245  Identities=13%  Similarity=0.199  Sum_probs=179.7

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRM  377 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~  377 (592)
                      +.+.+.||+|+||+||+|+. .+|+.||||++....        .+++.+|+++|++++ ||||+++++++........+
T Consensus        37 y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--------~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~  108 (328)
T d3bqca1          37 YQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK--------KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPA  108 (328)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC--------HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEE
T ss_pred             eEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH--------HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCcee
Confidence            34568899999999999996 568999999875321        356889999999995 99999999998755433578


Q ss_pred             EEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCC-CceEEecCCcchhhh
Q 007711          378 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIA  456 (592)
Q Consensus       378 lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~-~~~ki~DfGla~~~~  456 (592)
                      +|||||++|+|..+.     +.++......++.||+.||+|||+++  |+||||||+|||++.+ ..+||+|||+++...
T Consensus       109 ~v~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~~g--IvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~  181 (328)
T d3bqca1         109 LVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSMG--IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH  181 (328)
T ss_dssp             EEEECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEETTTTEEEECCGGGCEECC
T ss_pred             EEEeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhhcc--cccccccccceEEcCCCCeeeecccccceecc
Confidence            999999999997764     35889999999999999999999999  9999999999999865 469999999998664


Q ss_pred             hhh--------hhhcccccCC-CCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHH--H---------Hh--cCC
Q 007711          457 MAE--------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA--D---------YL--SGV  514 (592)
Q Consensus       457 ~~~--------~~~~~~~~~~-~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~--~---------~~--~~~  514 (592)
                      ...        ..+.+|+... ...++.++||||+||++|||++|+.||.........+..  .         ..  ...
T Consensus       182 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~  261 (328)
T d3bqca1         182 PGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNI  261 (328)
T ss_dssp             TTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTC
T ss_pred             CCCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhccc
Confidence            321        1222333222 233688999999999999999999999644332211110  0         00  000


Q ss_pred             CC---CccccCCC--------C-CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          515 QP---LQQFVDPT--------L-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       515 ~~---~~~~~~~~--------~-~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                      ..   ........        . .........++.+|+.+|++.||++|||++|+++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~  318 (328)
T d3bqca1         262 ELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  318 (328)
T ss_dssp             CCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            00   00000000        0 0111233467899999999999999999999875

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.4e-38  Score=317.37  Aligned_cols=246  Identities=12%  Similarity=0.134  Sum_probs=187.4

Q ss_pred             hhhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCC-CceeeeeEEEecCCCcceEE
Q 007711          301 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-KNFVNLIGFCEEEEPFTRMM  378 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H-~niv~l~g~~~~~~~~~~~l  378 (592)
                      .+.+.||+|+||+||+|+.. +|+.||||++......       .++.+|++.+..++| +|++.+++++....  ..++
T Consensus         8 ~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~-------~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~--~~~~   78 (293)
T d1csna_           8 KVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA-------PQLRDEYRTYKLLAGCTGIPNVYYFGQEGL--HNVL   78 (293)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTS-------CCHHHHHHHHHHTTTCTTCCCEEEEEEETT--EEEE
T ss_pred             EEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCc-------HHHHHHHHHHHHhcCCCCCCEEEEEeecCC--ccEE
Confidence            45688999999999999964 6889999987543322       246788899999865 89999999998877  6799


Q ss_pred             EEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcC-----CCceEEecCCcch
Q 007711          379 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-----DYAAKLSDLSFWN  453 (592)
Q Consensus       379 v~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~-----~~~~ki~DfGla~  453 (592)
                      ||||+ +|+|.++++. ....+++.....++.+++.||+|||+++  |+||||||+|||++.     ++.+||+|||+++
T Consensus        79 vme~~-~~~l~~~~~~-~~~~~~~~~~~~i~~q~~~~l~~lH~~g--iiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~  154 (293)
T d1csna_          79 VIDLL-GPSLEDLLDL-CGRKFSVKTVAMAAKQMLARVQSIHEKS--LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK  154 (293)
T ss_dssp             EEECC-CCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred             EEEec-CCCHHHHHHh-hccchhhHHHHHHHHHHHHHHHHHHHCC--ceeccCCccceeecCcccccCCceEEcccceeE
Confidence            99999 6899888863 3457899999999999999999999999  999999999999974     5689999999998


Q ss_pred             hhhhhh----------------hhhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCC-hHHHHHHHhcCC--
Q 007711          454 EIAMAE----------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDWAADYLSGV--  514 (592)
Q Consensus       454 ~~~~~~----------------~~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~-~~~~~~~~~~~~--  514 (592)
                      ......                ..+.+|+......++.++|||||||++|||+||+.||...... ............  
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~  234 (293)
T d1csna_         155 FYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS  234 (293)
T ss_dssp             ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHH
T ss_pred             EcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCC
Confidence            754221                1223333334445889999999999999999999999644332 222221111110  


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhCC
Q 007711          515 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  567 (592)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~~L~~i~~~  567 (592)
                      ....+        ....+++++.+++..||+.+|++||+++.+.+.|+++++.
T Consensus       235 ~~~~~--------l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~~  279 (293)
T d1csna_         235 TPLRE--------LCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLER  279 (293)
T ss_dssp             SCHHH--------HTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             CChHH--------hcCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHH
Confidence            01111        1112335789999999999999999999999999998643

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-38  Score=323.21  Aligned_cols=254  Identities=15%  Similarity=0.167  Sum_probs=181.9

Q ss_pred             hhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC---cce
Q 007711          301 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTR  376 (592)
Q Consensus       301 ~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~---~~~  376 (592)
                      ...+.||+|+||+||+|+. .+|+.||||++.....   .....+.+.+|+++|++++|||||++++++.....   ...
T Consensus        21 ~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~---~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~   97 (348)
T d2gfsa1          21 QNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ---SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFND   97 (348)
T ss_dssp             EEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTS---SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCC
T ss_pred             EEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhc---ChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCce
Confidence            3457899999999999995 5799999999864332   23345678899999999999999999999864321   134


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++++||+.+|+|.++++.   ..+++.....++.|++.||+|||+++  |+||||||+|||++.++.+|++|||++....
T Consensus        98 ~~i~~~~~gg~L~~~~~~---~~l~e~~~~~i~~qil~aL~~LH~~g--iiHrDiKp~NILi~~~~~~kl~dfg~a~~~~  172 (348)
T d2gfsa1          98 VYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSAD--IIHRDLKPSNLAVNEDCELKILDFGLARHTD  172 (348)
T ss_dssp             CEEEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECCC----CCT
T ss_pred             EEEEEeecCCchhhhccc---ccccHHHHHHHHHHHHHHHHHHHhCC--CcccccCCccccccccccccccccchhcccC
Confidence            677888899999999853   46899999999999999999999999  9999999999999999999999999987664


Q ss_pred             hhh------hhhccccc-CCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHhcCCCCCc-cccC------
Q 007711          457 MAE------MAATSKKL-SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ-QFVD------  522 (592)
Q Consensus       457 ~~~------~~~~~~~~-~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~-~~~~------  522 (592)
                      ...      ..+.+++. .....++.++|||||||++|||+||+.||...+  ................ ....      
T Consensus       173 ~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~  250 (348)
T d2gfsa1         173 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTD--HIDQLKLILRLVGTPGAELLKKISSES  250 (348)
T ss_dssp             GGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCHHHHTTCCCHH
T ss_pred             cccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCC--HHHHHHHHHHhcCCCChHHhhhccchh
Confidence            332      22333332 333446889999999999999999999995332  2211111111100000 0000      


Q ss_pred             --------CCCCCC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHhh
Q 007711          523 --------PTLSSF-----DEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREI  564 (592)
Q Consensus       523 --------~~~~~~-----~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~--~L~~i  564 (592)
                              ......     .......+.+|+.+|++.||.+|||++|+++  -++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~  307 (348)
T d2gfsa1         251 ARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQY  307 (348)
T ss_dssp             HHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTT
T ss_pred             hhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCCC
Confidence                    000000     0122356889999999999999999999987  34444

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-37  Score=315.00  Aligned_cols=246  Identities=17%  Similarity=0.209  Sum_probs=175.3

Q ss_pred             hhcccCcCCCeEEEEEEeC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCceeeeeEEEecCCC----cce
Q 007711          302 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  376 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~----~~~  376 (592)
                      +.+.||+|+||+||+|... +|..||||++.....   .....+.+.+|+.++++++|||||++++++...+.    ...
T Consensus        21 i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~---~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~   97 (355)
T d2b1pa1          21 NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ---NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDV   97 (355)
T ss_dssp             EEEECSCC--CEEEEEEETTTTEEEEEEEEESTTS---SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEE
T ss_pred             EEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhc---CHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCcee
Confidence            3478999999999999964 699999999865432   23445678999999999999999999999975422    267


Q ss_pred             EEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEecCCcchhhh
Q 007711          377 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  456 (592)
Q Consensus       377 ~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~~~  456 (592)
                      ++|||||.++.+ +.+.    ..+++.....++.|++.||+|||+.+  |+||||||+|||++.++.+|++|||+++...
T Consensus        98 ~iv~Ey~~~~l~-~~~~----~~~~~~~i~~~~~qil~gl~~LH~~g--iiHrDlKP~Nil~~~~~~~kl~df~~~~~~~  170 (355)
T d2b1pa1          98 YLVMELMDANLC-QVIQ----MELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDCTLKILDFGLARTAG  170 (355)
T ss_dssp             EEEEECCSEEHH-HHHT----SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred             EEEEeccchHHH-Hhhh----cCCCHHHHHHHHHHHHHHHHHhhhcc--cccccCCccccccccccceeeechhhhhccc
Confidence            999999976544 4443    35899999999999999999999999  9999999999999999999999999988664


Q ss_pred             hhhh--------hhcccccCCCCCCCCCCcchhhHHHHHHHHhCCCcccCCCCChHHHHHHHh-----------------
Q 007711          457 MAEM--------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL-----------------  511 (592)
Q Consensus       457 ~~~~--------~~~~~~~~~~~~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~~~~~~~~~~-----------------  511 (592)
                      ....        .+.+|+......++.++||||+||++|||++|+.||...  +.........                 
T Consensus       171 ~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~  248 (355)
T d2b1pa1         171 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR--DYIDQWNKVIEQLGTPCPEFMKKLQPT  248 (355)
T ss_dssp             ----------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCHHHHTTSCHH
T ss_pred             cccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCC--CHHHHHHHHHHhccCCCHHHHHHhhhh
Confidence            3221        222333333445789999999999999999999999432  2222211111                 


Q ss_pred             -----cCCCCC-----ccccC----CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 007711          512 -----SGVQPL-----QQFVD----PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  559 (592)
Q Consensus       512 -----~~~~~~-----~~~~~----~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~~  559 (592)
                           ......     .....    +............+.+|+.+|++.||++|||++|+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~  310 (355)
T d2b1pa1         249 VRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ  310 (355)
T ss_dssp             HHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                 110000     00000    0000112234567899999999999999999999974

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.8e-33  Score=286.87  Aligned_cols=252  Identities=17%  Similarity=0.223  Sum_probs=175.4

Q ss_pred             hhhhcccCcCCCeEEEEEEe-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-----------CCceeeeeEE
Q 007711          300 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-----------HKNFVNLIGF  367 (592)
Q Consensus       300 ~~~~~~lG~G~~g~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-----------H~niv~l~g~  367 (592)
                      +.+.++||+|+||+||+|+. .+|+.||||++....      ...+.+.+|++++++++           |+||++++++
T Consensus        15 Y~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~------~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~   88 (362)
T d1q8ya_          15 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK------VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH   88 (362)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH------HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred             EEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc------cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEE
Confidence            45678999999999999996 579999999986322      23456788888887775           5789999999


Q ss_pred             EecCCCcceEEEEeeCCCCCchh-hccccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEeeCcCCCCeEEcCCC---
Q 007711          368 CEEEEPFTRMMVFEYAPNGTLFE-HIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDY---  442 (592)
Q Consensus       368 ~~~~~~~~~~lv~Ey~~~gsL~~-~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-~~~~ivH~dLk~~NiLl~~~~---  442 (592)
                      +....+...+++++++..+.... .........+.+.....++.+++.|++|||+ .+  |+||||||+|||++.++   
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~--IvHrDlKp~NIll~~~~~~~  166 (362)
T d1q8ya_          89 FNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG--IIHTDIKPENVLMEIVDSPE  166 (362)
T ss_dssp             EEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC--EECSCCSGGGEEEEEEETTT
T ss_pred             eeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcC--cccccCChhHeeeeccCccc
Confidence            87654445677777776554432 2333455678889999999999999999997 77  99999999999998665   


Q ss_pred             ---ceEEecCCcchhhhhhhhhhcccccCCCC------CCCCCCcchhhHHHHHHHHhCCCcccCCCCC----hHHHHHH
Q 007711          443 ---AAKLSDLSFWNEIAMAEMAATSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGS----LEDWAAD  509 (592)
Q Consensus       443 ---~~ki~DfGla~~~~~~~~~~~~~~~~~~~------~~s~ksDVwSfGvvl~El~tG~~P~~~~~~~----~~~~~~~  509 (592)
                         .+|++|||.++..............+++|      .++.++||||+||+++||+||+.||......    ..+....
T Consensus       167 ~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~  246 (362)
T d1q8ya_         167 NLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQ  246 (362)
T ss_dssp             TEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHH
T ss_pred             ccceeeEeecccccccccccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHH
Confidence               38999999988664332222222233343      4788999999999999999999999643221    1111110


Q ss_pred             Hh---------------------cCCCCCccccCCC----------CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 007711          510 YL---------------------SGVQPLQQFVDPT----------LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIA  558 (592)
Q Consensus       510 ~~---------------------~~~~~~~~~~~~~----------~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~ev~  558 (592)
                      ..                     ........+....          ...........+.+|+.+|++.||.+|||++|++
T Consensus       247 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L  326 (362)
T d1q8ya_         247 IIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLV  326 (362)
T ss_dssp             HHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHH
T ss_pred             HHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence            00                     0000000000000          0123456677899999999999999999999998


Q ss_pred             H
Q 007711          559 A  559 (592)
Q Consensus       559 ~  559 (592)
                      +
T Consensus       327 ~  327 (362)
T d1q8ya_         327 N  327 (362)
T ss_dssp             T
T ss_pred             c
Confidence            6

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.87  E-value=4.9e-23  Score=190.77  Aligned_cols=167  Identities=11%  Similarity=0.051  Sum_probs=118.7

Q ss_pred             hhcccCcCCCeEEEEEEeCCCcEEEEEEeeecccC-------------CCchhHHHHHHHHHHHHhcCCCCceeeeeEEE
Q 007711          302 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-------------DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFC  368 (592)
Q Consensus       302 ~~~~lG~G~~g~Vy~g~~~~~~~vavk~~~~~~~~-------------~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~  368 (592)
                      +.+.||+|+||+||+|+..+|+.||||++......             .........+.+|...+.++.|.+++..+++.
T Consensus         4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            46789999999999999889999999986532110             00111234456788899999999999887653


Q ss_pred             ecCCCcceEEEEeeCCCCCchhhccccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEeeCcCCCCeEEcCCCceEEec
Q 007711          369 EEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD  448 (592)
Q Consensus       369 ~~~~~~~~~lv~Ey~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ivH~dLk~~NiLl~~~~~~ki~D  448 (592)
                            ..+++|||++++.+.++         ......+++.+++++++|||+++  |+||||||+|||++++ .++|+|
T Consensus        84 ------~~~lvme~~~~~~~~~l---------~~~~~~~i~~ql~~~l~~lH~~g--iiHrDiKP~NILv~~~-~~~liD  145 (191)
T d1zara2          84 ------GNAVLMELIDAKELYRV---------RVENPDEVLDMILEEVAKFYHRG--IVHGDLSQYNVLVSEE-GIWIID  145 (191)
T ss_dssp             ------TTEEEEECCCCEEGGGC---------CCSCHHHHHHHHHHHHHHHHHTT--EECSCCSTTSEEEETT-EEEECC
T ss_pred             ------CCEEEEEeeccccccch---------hhHHHHHHHHHHHHHHHHHhhCC--EEEccCChhheeeeCC-CEEEEE
Confidence                  23799999987655432         22335678999999999999999  9999999999999965 588999


Q ss_pred             CCcchhhhhhhhh-hc------ccccCCCCCCCCCCcchhhHHHHH
Q 007711          449 LSFWNEIAMAEMA-AT------SKKLSSAPSASLESNVYNFGVLLF  487 (592)
Q Consensus       449 fGla~~~~~~~~~-~~------~~~~~~~~~~s~ksDVwSfGvvl~  487 (592)
                      ||.++........ ..      ...++ ...++.++||||..--++
T Consensus       146 FG~a~~~~~~~~~~~l~rd~~~~~~~f-~r~y~~~~d~~s~~~~~~  190 (191)
T d1zara2         146 FPQSVEVGEEGWREILERDVRNIITYF-SRTYRTEKDINSAIDRIL  190 (191)
T ss_dssp             CTTCEETTSTTHHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHH
T ss_pred             CCCcccCCCCCcHHHHHHHHHHHHHHH-cCCCCCcccHHHHHHHHh
Confidence            9998765422110 00      00111 234677899999765443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.58  E-value=9e-16  Score=152.71  Aligned_cols=114  Identities=26%  Similarity=0.388  Sum_probs=109.4

Q ss_pred             eeecccCCccccc--cCchhhcCCCCCCEEEeeC-CccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEe
Q 007711            3 VMCRNLKDLCLEG--TLAPEIQSLTHIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL   79 (592)
Q Consensus         3 ~~~l~l~~~~l~g--~~p~~~~~l~~L~~l~l~~-n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~   79 (592)
                      |+.|+|++|+++|  .||++|++|++|++|+|++ |+++|.||.+|+++++|++|+|++|++.|..|..+..+..|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            7889999999998  5899999999999999986 899999999999999999999999999999999999999999999


Q ss_pred             ccCcccccccChhhhcCCCCCEEECCCCCCCcccccc
Q 007711           80 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        80 l~~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      +++|.+.+.+|..+++++.|+.+++++|.++|.+|..
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~  168 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS  168 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred             cccccccccCchhhccCcccceeeccccccccccccc
Confidence            9999999999999999999999999999999999863

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.47  E-value=6e-14  Score=128.82  Aligned_cols=110  Identities=19%  Similarity=0.217  Sum_probs=62.1

Q ss_pred             eeecccCCccccccCc-hhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            3 VMCRNLKDLCLEGTLA-PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p-~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      ++.|+|++|.|++.++ ..|..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|++++-.|..|..+++|+.|+|+
T Consensus        31 l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~  110 (192)
T d1w8aa_          31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY  110 (192)
T ss_dssp             CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC
T ss_pred             CCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccC
Confidence            4455566666554443 334555666666666666665555555555666666666666654444445555666666666


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      +|++++..|..|..+++|++|+|++|.+.+.
T Consensus       111 ~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_         111 DNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CccccccCHHHhcCCcccccccccccccccc
Confidence            6666554455555555666666666655544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.46  E-value=2.7e-14  Score=141.82  Aligned_cols=116  Identities=22%  Similarity=0.362  Sum_probs=109.5

Q ss_pred             ceeecccCC-ccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEec
Q 007711            2 CVMCRNLKD-LCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~-~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l   80 (592)
                      .|+.|+|++ |+|+|.||++|++|++|++|+|++|+|.|..|..+..+..|+.+++++|++.+.+|..+..++.|+.+++
T Consensus        77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l  156 (313)
T d1ogqa_          77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeec
Confidence            478899986 8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccccChhhhcCCCC-CEEECCCCCCCccccccc
Q 007711           81 DNNDFVGSLSPEIYKLQVL-SESQVDEGQLSSAAKKEQ  117 (592)
Q Consensus        81 ~~N~~~g~ip~~~~~~~~l-~~l~l~~n~l~g~~p~~~  117 (592)
                      ++|.++|.+|..++.+..+ +.++++.|+++|..|...
T Consensus       157 ~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~  194 (313)
T d1ogqa_         157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999998886 889999999999888643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=1.9e-13  Score=115.62  Aligned_cols=104  Identities=21%  Similarity=0.229  Sum_probs=92.6

Q ss_pred             eecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCc
Q 007711            4 MCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN   83 (592)
Q Consensus         4 ~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N   83 (592)
                      +.|+|++|+++ .+| .+..+++|+.|+|++|.|+ .+|..++.+++|+.|++++|+++ .+| .+..+++|+.+++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            47899999998 565 5999999999999999998 68999999999999999999998 566 5899999999999999


Q ss_pred             cccccc-ChhhhcCCCCCEEECCCCCCCcc
Q 007711           84 DFVGSL-SPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        84 ~~~g~i-p~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      +++..- +..++.+++|+.|++++|.++..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            998543 35789999999999999999854

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=1.3e-12  Score=119.60  Aligned_cols=110  Identities=20%  Similarity=0.266  Sum_probs=98.4

Q ss_pred             eecccCCccccccCchhhcCCCCCCEEEeeCCccccCC-CccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            4 MCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGII-PEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         4 ~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~i-P~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      ..++.++++|+ .||+.|.  ++++.|+|++|+|++.+ +..|..+++|+.|+|++|++.+..+..+..+++|+.|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            35678899998 7998775  78999999999999866 55678999999999999999988889999999999999999


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcccccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      |++++..|..|.+++.|++|+|++|+|++..|..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~  121 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS  121 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHH
Confidence            9999877888999999999999999999876653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.8e-11  Score=118.07  Aligned_cols=100  Identities=20%  Similarity=0.182  Sum_probs=52.4

Q ss_pred             ccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCcccc
Q 007711            7 NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFV   86 (592)
Q Consensus         7 ~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~~   86 (592)
                      +.++++|+ .||++|.  ++|+.|+|++|+|++..+..|.++++|+.|+|++|+++ .+|. ++.+++|+.|+|++|+++
T Consensus        16 ~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~   90 (266)
T d1p9ag_          16 NCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ   90 (266)
T ss_dssp             ECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCS
T ss_pred             EccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-cccccccccccccccccc
Confidence            44455555 3554443  34555555555555444445555555555555555555 3432 344555555555555555


Q ss_pred             cccChhhhcCCCCCEEECCCCCCCcc
Q 007711           87 GSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        87 g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      + +|..+..++.|+.|++++|.+.+.
T Consensus        91 ~-~~~~~~~l~~L~~L~l~~~~~~~~  115 (266)
T d1p9ag_          91 S-LPLLGQTLPALTVLDVSFNRLTSL  115 (266)
T ss_dssp             S-CCCCTTTCTTCCEEECCSSCCCCC
T ss_pred             c-ccccccccccccccccccccccee
Confidence            3 344455555555555555555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=6.9e-12  Score=122.26  Aligned_cols=113  Identities=19%  Similarity=0.177  Sum_probs=82.9

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|.+.+..+..+..+.+|+.+++++|+|++..+..|..+++|+.|++++|++++-.|..+..+++|+.+++++
T Consensus       107 L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~  186 (284)
T d1ozna_         107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (284)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhh
Confidence            56677777777665556667777777777777777765566677777777777777777765566667777777777777


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      |++++..|..|..+++|++|++++|++++..+.
T Consensus       187 N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~  219 (284)
T d1ozna_         187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (284)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             ccccccChhHhhhhhhccccccccccccccccc
Confidence            777777777777777777777777777776553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.2e-11  Score=115.88  Aligned_cols=108  Identities=15%  Similarity=0.175  Sum_probs=80.1

Q ss_pred             CCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCcccccc
Q 007711            9 KDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGS   88 (592)
Q Consensus         9 ~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~~g~   88 (592)
                      ..+.++...|..+.++++|+.|+|++|.+.+..+..+..+.+|+.+++++|++++-.+..|..+++|+.|+|++|++++.
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence            34455544466678888888888888888776677777778888888888888754455667777888888888888877


Q ss_pred             cChhhhcCCCCCEEECCCCCCCcccccc
Q 007711           89 LSPEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        89 ip~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      .|..+.++++|+.+++++|++++..|..
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~  196 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHA  196 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             chhhhccccccchhhhhhccccccChhH
Confidence            6777778888888888888888766643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.4e-11  Score=106.60  Aligned_cols=105  Identities=19%  Similarity=0.208  Sum_probs=78.6

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCcc-ccCCCCCCeEec
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILLL   80 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~-~~~~~~L~~l~l   80 (592)
                      .++.|+|++|+++ .||..+..+++|+.|+|++|.|+ .++ .+..+++|+.|++++|+++ .+|.. +..+++|+.|+|
T Consensus        19 ~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          19 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEEC
T ss_pred             cCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCcccccccccccccee
Confidence            3567888888887 46665677888888888888887 454 4778888888888888887 45544 456888888888


Q ss_pred             cCcccccccC--hhhhcCCCCCEEECCCCCCCc
Q 007711           81 DNNDFVGSLS--PEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        81 ~~N~~~g~ip--~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      ++|+++. ++  ..+..+++|++|++++|.++.
T Consensus        95 ~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          95 TNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             CSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ccccccc-cccccccccccccchhhcCCCcccc
Confidence            8888873 33  357778888888888887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1e-10  Score=112.62  Aligned_cols=112  Identities=21%  Similarity=0.159  Sum_probs=99.6

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.|++ +|..+..+++|+.|++++|.+.+..+..+..+.+++.|++++|.+.+-.|..+..+++|+.++++
T Consensus        78 ~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_          78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (266)
T ss_dssp             TCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cccccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccc
Confidence            47889999999985 57789999999999999999998888888899999999999999996555666789999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      +|++++..|..+..+++|++|+|++|+|+ .+|.
T Consensus       157 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~  189 (266)
T d1p9ag_         157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK  189 (266)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             cccccccCccccccccccceeecccCCCc-ccCh
Confidence            99999888888999999999999999999 6664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.2e-10  Score=102.31  Aligned_cols=107  Identities=15%  Similarity=0.089  Sum_probs=91.0

Q ss_pred             eecccCCccccccCchhhcCCCCCCEEEeeCC-ccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            4 MCRNLKDLCLEGTLAPEIQSLTHIKSIILRNN-SFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         4 ~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n-~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      ..++.+++++. .+|..+..+++|+.|+|++| .|...-+..|.++++|+.|+|++|+++.--|..|..+++|+.|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            44667777776 57888999999999999766 58865567799999999999999999966677789999999999999


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      |+++ .+|..+.....|+.|+|++|.|...
T Consensus        90 N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~  118 (156)
T d2ifga3          90 NALE-SLSWKTVQGLSLQELVLSGNPLHCS  118 (156)
T ss_dssp             SCCS-CCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             CCCc-ccChhhhccccccccccCCCcccCC
Confidence            9999 7777766667899999999999753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=2.3e-10  Score=96.16  Aligned_cols=97  Identities=20%  Similarity=0.260  Sum_probs=81.4

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCC--ccccCCCCCCeEe
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP--NDLGINHSLTILL   79 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP--~~~~~~~~L~~l~   79 (592)
                      .|+.|+|++|.|+ .+|++++.+++|+.|++++|.|++ +| .++.+++|+.|++++|+++. +|  ..+..+++|+.++
T Consensus        21 ~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~~~~L~~L~   96 (124)
T d1dcea3          21 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLN   96 (124)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCC-CCCchhhcCCCCCCEEE
Confidence            4789999999998 689999999999999999999995 56 48999999999999999984 44  4688999999999


Q ss_pred             ccCcccccc--cChh-hhcCCCCCEE
Q 007711           80 LDNNDFVGS--LSPE-IYKLQVLSES  102 (592)
Q Consensus        80 l~~N~~~g~--ip~~-~~~~~~l~~l  102 (592)
                      +++|.++..  ++.. ...+++|+.+
T Consensus        97 l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          97 LQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCcCCcCccHHHHHHHHCcCcceE
Confidence            999999843  2333 3446777665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.98  E-value=5.5e-10  Score=109.55  Aligned_cols=105  Identities=16%  Similarity=0.230  Sum_probs=93.3

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.+++++|.++ .+|..+  +++|+.|++++|...+.+|..+..++.++.|++++|++.+-.|..+..+++|+.|+|++
T Consensus       152 L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         152 LSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN  228 (305)
T ss_dssp             CCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred             cCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccc
Confidence            567888899887 466543  68999999999999999999999999999999999999987788888999999999999


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      |+++ .||..+.++++|+.|+|++|+|+.
T Consensus       229 N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         229 NKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             SCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             cccc-ccccccccccCCCEEECCCCccCc
Confidence            9998 788899999999999999999985

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.93  E-value=8.4e-10  Score=108.17  Aligned_cols=106  Identities=17%  Similarity=0.172  Sum_probs=87.7

Q ss_pred             ecccCCcc--ccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            5 CRNLKDLC--LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         5 ~l~l~~~~--l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      .++...|.  ..+..+..+..+++|+.+++++|.++ .+|..+  +++|+.|++++|..++..|..+..++.++.|++++
T Consensus       128 ~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~  204 (305)
T d1xkua_         128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF  204 (305)
T ss_dssp             EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             ccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccc
Confidence            34444443  34455667888999999999999988 577643  68899999999999998999999999999999999


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      |.+++..|..+.++++|++|+|++|+|+. +|
T Consensus       205 n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp  235 (305)
T d1xkua_         205 NSISAVDNGSLANTPHLRELHLNNNKLVK-VP  235 (305)
T ss_dssp             SCCCEECTTTGGGSTTCCEEECCSSCCSS-CC
T ss_pred             ccccccccccccccccceeeecccccccc-cc
Confidence            99998888889999999999999999984 44

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=8.2e-10  Score=97.45  Aligned_cols=89  Identities=19%  Similarity=0.239  Sum_probs=78.5

Q ss_pred             hhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCC
Q 007711           20 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL   99 (592)
Q Consensus        20 ~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~~g~ip~~~~~~~~l   99 (592)
                      .+.++.+|+.|+|++|+|+ .||..+..+++|+.|+|++|+++ .++ .+..+++|+.|+|++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            4678889999999999998 57877788999999999999998 674 58899999999999999996555556789999


Q ss_pred             CEEECCCCCCCc
Q 007711          100 SESQVDEGQLSS  111 (592)
Q Consensus       100 ~~l~l~~n~l~g  111 (592)
                      +.|++++|+++.
T Consensus        90 ~~L~L~~N~i~~  101 (162)
T d1a9na_          90 TELILTNNSLVE  101 (162)
T ss_dssp             CEEECCSCCCCC
T ss_pred             ccceeccccccc
Confidence            999999999985

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.82  E-value=1.2e-08  Score=93.18  Aligned_cols=102  Identities=21%  Similarity=0.285  Sum_probs=82.6

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .++.|++++|+++ .++ .+..+++|++|+|++|++++..|  ++++++|+.|++++|.+. .+| .+..++.|+.++++
T Consensus        41 ~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-cccccccccccccc
Confidence            3677888888887 353 58889999999999999986433  889999999999999887 455 47788899999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      +|.+...  ..+..+++|+.|++++|++..
T Consensus       115 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~~  142 (199)
T d2omxa2         115 NNQITDI--DPLKNLTNLNRLELSSNTISD  142 (199)
T ss_dssp             SSCCCCC--GGGTTCTTCSEEECCSSCCCC
T ss_pred             ccccccc--cccchhhhhHHhhhhhhhhcc
Confidence            9888753  347788999999999998875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.76  E-value=6.9e-11  Score=108.33  Aligned_cols=89  Identities=21%  Similarity=0.333  Sum_probs=69.4

Q ss_pred             chhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCC
Q 007711           18 APEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQ   97 (592)
Q Consensus        18 p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~~g~ip~~~~~~~   97 (592)
                      |.++..|++|+.|+|++|+|+ .++ .+..+++|+.|+|++|+++ .+|.....+++|+.|++++|+++. + +.+..++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~  115 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLV  115 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHH
T ss_pred             hhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccccc
Confidence            356888888888888888888 565 4788888888888888887 677655556678888888888874 3 3477788


Q ss_pred             CCCEEECCCCCCCc
Q 007711           98 VLSESQVDEGQLSS  111 (592)
Q Consensus        98 ~l~~l~l~~n~l~g  111 (592)
                      +|+.|++++|+++.
T Consensus       116 ~L~~L~L~~N~i~~  129 (198)
T d1m9la_         116 NLRVLYMSNNKITN  129 (198)
T ss_dssp             HSSEEEESEEECCC
T ss_pred             cccccccccchhcc
Confidence            88888888888874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.76  E-value=1e-08  Score=94.43  Aligned_cols=103  Identities=22%  Similarity=0.313  Sum_probs=55.6

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|+|++|.+++ ++ .++.+++|+.|++++|++++ +| .+..+++|+.|++++|.+. .+ ..+..++.|+.++++.
T Consensus        70 L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~  143 (210)
T d1h6ta2          70 VTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGN  143 (210)
T ss_dssp             CCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCS
T ss_pred             CCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-ccccccccccccccccccc-cc-cccccccccccccccc
Confidence            3444555555443 22 23445555555555555542 33 2444555555555555443 22 2344455555555555


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAA  113 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~  113 (592)
                      |.+++  +..+..+++|+.+++++|++++..
T Consensus       144 n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~  172 (210)
T d1h6ta2         144 NKITD--ITVLSRLTKLDTLSLEDNQISDIV  172 (210)
T ss_dssp             SCCCC--CGGGGGCTTCSEEECCSSCCCCCG
T ss_pred             ccccc--cccccccccccccccccccccccc
Confidence            55543  334667889999999999998643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.76  E-value=4.8e-09  Score=105.77  Aligned_cols=105  Identities=18%  Similarity=0.200  Sum_probs=89.5

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+++++.+++. + .+..++.++.+.++.|.+.+  +..+..+++++.|++++|++++- + .+..+++|+.|+|+
T Consensus       264 ~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~  337 (384)
T d2omza2         264 KLTELKLGANQISNI-S-PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFA  337 (384)
T ss_dssp             TCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECC
T ss_pred             cCCEeeccCcccCCC-C-cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECC
Confidence            467889999999864 3 37889999999999999997  34578899999999999999964 3 37889999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++++ +| .+.++++|++|++++|++++.+|
T Consensus       338 ~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         338 NNKVSD-VS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             SSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             CCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh
Confidence            999985 44 68999999999999999998765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.75  E-value=2.8e-08  Score=91.48  Aligned_cols=102  Identities=18%  Similarity=0.230  Sum_probs=78.3

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      |+.|++++|.++. ++ .+..+++|+.|+|++|.|++ +| .++.+++|++|++++|+++ .+| .+..+++|+.|++++
T Consensus        48 L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          48 IDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTT
T ss_pred             ccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccccc
Confidence            5677888888774 33 47788888888888888886 44 3678888888888888887 465 477788888888888


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      |.+..  .+.+..++.++.++++.|+++..
T Consensus       122 ~~~~~--~~~l~~l~~l~~l~~~~n~l~~~  149 (210)
T d1h6ta2         122 NGISD--INGLVHLPQLESLYLGNNKITDI  149 (210)
T ss_dssp             SCCCC--CGGGGGCTTCCEEECCSSCCCCC
T ss_pred             ccccc--ccccccccccccccccccccccc
Confidence            88763  34577888888888888888754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=7.2e-09  Score=90.59  Aligned_cols=83  Identities=16%  Similarity=0.221  Sum_probs=72.7

Q ss_pred             eeecccCCcc-ccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            3 VMCRNLKDLC-LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         3 ~~~l~l~~~~-l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      |+.|+|++|+ |+..-+..|.++++|+.|+|++|+|+..-|..|..+++|+.|+|++|+|+ .+|.......+|+.|+|+
T Consensus        33 l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~  111 (156)
T d2ifga3          33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLS  111 (156)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECC
T ss_pred             cCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccC
Confidence            5778897775 77544467999999999999999999887888999999999999999999 888877777789999999


Q ss_pred             Ccccc
Q 007711           82 NNDFV   86 (592)
Q Consensus        82 ~N~~~   86 (592)
                      +|.|.
T Consensus       112 ~Np~~  116 (156)
T d2ifga3         112 GNPLH  116 (156)
T ss_dssp             SSCCC
T ss_pred             CCccc
Confidence            99985

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.73  E-value=1.7e-08  Score=92.14  Aligned_cols=103  Identities=20%  Similarity=0.278  Sum_probs=88.3

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|.+++. ++ ++++++|+.|++++|.+. .+| .+++++.|+.|++++|.+...  ..+..+++|+.++++
T Consensus        63 nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~  136 (199)
T d2omxa2          63 NLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELS  136 (199)
T ss_dssp             TCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECC
T ss_pred             CcCcCccccccccCc-cc-ccCCcccccccccccccc-ccc-ccccccccccccccccccccc--cccchhhhhHHhhhh
Confidence            478899999999974 43 999999999999999987 455 388999999999999998753  357889999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      +|++.. + +.+..+++|+.|++++|++++.
T Consensus       137 ~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         137 SNTISD-I-SALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             SSCCCC-C-GGGTTCTTCSEEECCSSCCCCC
T ss_pred             hhhhcc-c-ccccccccccccccccccccCC
Confidence            999973 4 4688999999999999999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.64  E-value=2.8e-08  Score=100.01  Aligned_cols=106  Identities=19%  Similarity=0.235  Sum_probs=90.2

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|++++|.+++..|  +..+++|+.|++++|.+++..|  +..+..++.++++.|++++ + ..+..+++++.|+|+
T Consensus       242 ~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls  315 (384)
T d2omza2         242 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-I-SPISNLKNLTYLTLY  315 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECC
T ss_pred             ccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCc--ccccccccccccccccccc-c-cccchhcccCeEECC
Confidence            36788999999997443  8899999999999999996543  7889999999999999986 3 457889999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE  116 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~~  116 (592)
                      +|++++..  .+..+++|+.|++++|++++ ++..
T Consensus       316 ~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~~l  347 (384)
T d2omza2         316 FNNISDIS--PVSSLTKLQRLFFANNKVSD-VSSL  347 (384)
T ss_dssp             SSCCSCCG--GGGGCTTCCEEECCSSCCCC-CGGG
T ss_pred             CCCCCCCc--ccccCCCCCEEECCCCCCCC-ChhH
Confidence            99999754  38899999999999999986 4433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.64  E-value=8.5e-10  Score=100.85  Aligned_cols=108  Identities=17%  Similarity=0.174  Sum_probs=88.1

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|+++ .++ .+..|++|+.|+|++|.|+ .+|..+..+++|+.|++++|+++ .++ .+..+++|+.|+|+
T Consensus        49 ~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~  123 (198)
T d1m9la_          49 ACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMS  123 (198)
T ss_dssp             TCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEES
T ss_pred             ccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccccccccc
Confidence            4778999999998 565 5889999999999999998 67776666778999999999998 453 47788999999999


Q ss_pred             CcccccccC-hhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip-~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|+++..-. ..+..+++|+.|++++|.++...+
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             cchhccccccccccCCCccceeecCCCccccCcc
Confidence            999974321 467889999999999998876544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.49  E-value=8.4e-08  Score=89.21  Aligned_cols=105  Identities=22%  Similarity=0.320  Sum_probs=84.3

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.++++++...+..  .+...+.+..+.++++.+....+  +.++++|+.|++++|.+++..  .+..+++|+.|+|+
T Consensus       108 ~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls  181 (227)
T d1h6ua2         108 SIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKAD  181 (227)
T ss_dssp             TCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECC
T ss_pred             cccccccccccccccc--hhccccchhhhhchhhhhchhhh--hccccccccccccccccccch--hhcccccceecccC
Confidence            3667788888877533  46778899999999999886543  678889999999999987433  37889999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|++++ +| .+.++++|++|++++|++++..|
T Consensus       182 ~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         182 DNKISD-IS-PLASLPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             SSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG
T ss_pred             CCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc
Confidence            999985 44 38899999999999999986533

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.9e-07  Score=87.47  Aligned_cols=104  Identities=9%  Similarity=0.097  Sum_probs=85.7

Q ss_pred             cccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCc-cccCCCCCCeEecc-Cc
Q 007711            6 RNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTILLLD-NN   83 (592)
Q Consensus         6 l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~-~~~~~~~L~~l~l~-~N   83 (592)
                      ++.++.+|+ .+|+++.  ++++.|+|++|+|...-+..|.++++|++|+|++|.+...+|. .|..++.++.+.+. .|
T Consensus        13 i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          13 FLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             EEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             EEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            445566777 7887664  5899999999999854455689999999999999999877765 56789999999876 47


Q ss_pred             ccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           84 DFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        84 ~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      ++....+..+.+++.|+.+++++|++...
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~  118 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHL  118 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSC
T ss_pred             cccccccccccccccccccccchhhhccc
Confidence            78877777889999999999999999754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.38  E-value=3.8e-07  Score=90.00  Aligned_cols=99  Identities=24%  Similarity=0.275  Sum_probs=82.2

Q ss_pred             eeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC
Q 007711            3 VMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN   82 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~   82 (592)
                      ++.|+|++++|+ .+|+.   +++|+.|+|++|+|+ .+|..+   .+|+.|++++|+++ .++.-   .+.|++|+|++
T Consensus        40 l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          40 AHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             CSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECCS
T ss_pred             CCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccccc
Confidence            678999999998 68863   578999999999999 889764   57889999999988 56542   24699999999


Q ss_pred             cccccccChhhhcCCCCCEEECCCCCCCccccc
Q 007711           83 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  115 (592)
Q Consensus        83 N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p~  115 (592)
                      |.++ .+|. ++.++.|+.|++++|.+++....
T Consensus       108 n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~  138 (353)
T d1jl5a_         108 NQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDL  138 (353)
T ss_dssp             SCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCC
T ss_pred             cccc-cccc-hhhhccceeeccccccccccccc
Confidence            9998 6774 68899999999999999876543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.38  E-value=4.2e-07  Score=84.32  Aligned_cols=103  Identities=20%  Similarity=0.272  Sum_probs=85.6

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .++.+++++|.++ .++ .+..+++|+.+.+++|...+..+  +.....+..+.++++.+....  .+..+++|+.|+++
T Consensus        86 ~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~  159 (227)
T d1h6ua2          86 KITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIG  159 (227)
T ss_dssp             SCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECC
T ss_pred             ccccccccccccc-ccc-cccccccccccccccccccccch--hccccchhhhhchhhhhchhh--hhcccccccccccc
Confidence            4677889998887 455 58899999999999999886433  667889999999999987544  36778899999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      +|.+++..  .++++++|+.|+|++|++++.
T Consensus       160 ~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l  188 (227)
T d1h6ua2         160 NAQVSDLT--PLANLSKLTTLKADDNKISDI  188 (227)
T ss_dssp             SSCCCCCG--GGTTCTTCCEEECCSSCCCCC
T ss_pred             ccccccch--hhcccccceecccCCCccCCC
Confidence            99997543  388999999999999999864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.3e-06  Score=81.52  Aligned_cols=109  Identities=17%  Similarity=0.145  Sum_probs=86.4

Q ss_pred             ceeecccCCccccccCch-hhcCCCCCCEEEeeCCccccCCCc-cccCCCCCCeeeccC-CcccccCCccccCCCCCCeE
Q 007711            2 CVMCRNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGH-NNFSGPLPNDLGINHSLTIL   78 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~-~~~~l~~L~~l~l~~n~l~g~iP~-~~~~l~~L~~l~l~~-N~l~g~iP~~~~~~~~L~~l   78 (592)
                      .++.|+|++|.++. +|+ .|.++++|+.|+|++|.+...+|. .|..+++++.+++.. |++....|..+..+++|+.+
T Consensus        30 ~l~~L~Ls~n~i~~-l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCCE-ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCEEECcCCcCCc-cChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            37889999999985 554 689999999999999999887764 578899999999864 78887777888999999999


Q ss_pred             eccCcccccccCh-hhhcCCCCCEEECCCCCCCc
Q 007711           79 LLDNNDFVGSLSP-EIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        79 ~l~~N~~~g~ip~-~~~~~~~l~~l~l~~n~l~g  111 (592)
                      ++++|.+...-+. .+..+..+..+..+++++..
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~  142 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT  142 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCE
T ss_pred             ccchhhhccccccccccccccccccccccccccc
Confidence            9999999754332 23455666666667777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=3.2e-07  Score=93.92  Aligned_cols=110  Identities=17%  Similarity=0.195  Sum_probs=87.3

Q ss_pred             ceeecccCCcccccc-CchhhcCCCCCCEEEeeCCccc----cCCCccccCCCCCCeeeccCCcccc----cCCcccc-C
Q 007711            2 CVMCRNLKDLCLEGT-LAPEIQSLTHIKSIILRNNSFS----GIIPEGFGELEELEVLDFGHNNFSG----PLPNDLG-I   71 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~-~p~~~~~l~~L~~l~l~~n~l~----g~iP~~~~~l~~L~~l~l~~N~l~g----~iP~~~~-~   71 (592)
                      .|+.||+++|++++. +..-+..+++|+.|+|++|.++    ..|+..+..+++|+.|||++|.++.    .+...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            478999999999864 2344677899999999999987    2456667889999999999999862    1223332 2


Q ss_pred             CCCCCeEeccCcccccc----cChhhhcCCCCCEEECCCCCCCc
Q 007711           72 NHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSS  111 (592)
Q Consensus        72 ~~~L~~l~l~~N~~~g~----ip~~~~~~~~l~~l~l~~n~l~g  111 (592)
                      ..+|+.|+|++|+++..    ++..+..+++|++|++++|.++.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            45899999999999754    56667789999999999999874

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.89  E-value=3.9e-05  Score=72.05  Aligned_cols=130  Identities=12%  Similarity=0.094  Sum_probs=79.1

Q ss_pred             CCeEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC-CCceeeeeEEEecCCCcceEEEEeeCCCCCc
Q 007711          310 PIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL  388 (592)
Q Consensus       310 ~~g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~~~lv~Ey~~~gsL  388 (592)
                      +...||+... ++..+.+|.........     ...+.+|...+..+. +--+.++++++...+  ..++||+++++..+
T Consensus        26 s~~~v~rv~~-~~~~~vlk~~~~~~~~~-----~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~--~~~lv~~~l~G~~~   97 (263)
T d1j7la_          26 SPAKVYKLVG-ENENLYLKMTDSRYKGT-----TYDVEREKDMMLWLEGKLPVPKVLHFERHDG--WSNLLMSEADGVLC   97 (263)
T ss_dssp             SSSEEEEEEC-SSCEEEEEEECGGGTTS-----TTCHHHHHHHHHHHTTTSCCCCEEEEEEETT--EEEEEEECCSSEEH
T ss_pred             CCCcEEEEEe-CCCeEEEEEcCCCcccc-----hhhHHHHHHHHHHHhccCCCCcEEEEEecCC--ceEEEEEecccccc
Confidence            3468999875 45566777665433222     123567777776653 433567777777665  57899999988776


Q ss_pred             hhhccccCCCCCCHHHHHHHHHHHHHHHHHhhc-----------------------------------------------
Q 007711          389 FEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-----------------------------------------------  421 (592)
Q Consensus       389 ~~~l~~~~~~~l~~~~~~~ia~~ia~gl~yLH~-----------------------------------------------  421 (592)
                      .+.....    -.   ..+++.++++.++.||+                                               
T Consensus        98 ~~~~~~~----~~---~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (263)
T d1j7la_          98 SEEYEDE----QS---PEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPREL  170 (263)
T ss_dssp             HHHTTTC----SC---HHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSSHHHH
T ss_pred             ccccccc----cc---HHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccccchHHHHH
Confidence            4432110    00   11122222222222221                                               


Q ss_pred             ----------CCCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          422 ----------LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       422 ----------~~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                                ..+.++|+|+.+.|||++++..+-|.||+.+..
T Consensus       171 ~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         171 YDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             HHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhccc
Confidence                      112378999999999999887778999997654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=6.6e-07  Score=78.26  Aligned_cols=106  Identities=19%  Similarity=0.146  Sum_probs=68.1

Q ss_pred             eecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCccccc--CCccccCCCCCCeEecc
Q 007711            4 MCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP--LPNDLGINHSLTILLLD   81 (592)
Q Consensus         4 ~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~--iP~~~~~~~~L~~l~l~   81 (592)
                      ..|+|+++..    .+.+..+..+..+++.+|... .++.....+++|++|+|++|+++.-  ++..+..+++|+.|+|+
T Consensus        25 ~~Ldls~l~~----~~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls   99 (162)
T d1koha1          25 QALDLKGLRS----DPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS   99 (162)
T ss_dssp             CCBCCCCCSS----CTTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCT
T ss_pred             CeeecccCCC----CchhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccc
Confidence            3455555442    223445555555555555443 4555556788899999999988742  23445678889999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCCcccc
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  114 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~g~~p  114 (592)
                      +|.++..-+-...+...|+.|++++|.++....
T Consensus       100 ~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1         100 GNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             TSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             cCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            999884333234455678889999998886544

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.83  E-value=5.9e-05  Score=70.37  Aligned_cols=140  Identities=9%  Similarity=0.068  Sum_probs=81.2

Q ss_pred             ccCcCCC-eEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCC--CCceeeeeEEEecCCCcceEEEEe
Q 007711          305 VIGSSPI-GTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN--HKNFVNLIGFCEEEEPFTRMMVFE  381 (592)
Q Consensus       305 ~lG~G~~-g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~--H~niv~l~g~~~~~~~~~~~lv~E  381 (592)
                      .+..|.. +.||+...+++..+.+|.......        .++..|+..++.+.  .-.+.++++++.+.+  ..++|||
T Consensus        17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~--------~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~--~~~~v~~   86 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGAL--------NELQDEAARLSWLATTGVPCAAVLDVVTEAG--RDWLLLG   86 (255)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSCTT--------SCHHHHHHHHHHHHTTTCCBCCEEEEEECSS--CEEEEEE
T ss_pred             EcCCcccCCeEEEEEeCCCCEEEEEeCCccCH--------hHHHHHHHHHHHHHhcCCCCCceeeeccccc--ceEEEEE
Confidence            3455554 679999887888888886543321        23566777776653  333566787777665  5789999


Q ss_pred             eCCCCCchhh-----------------cccc--CCCCC--CHHHHHHHH--------------------HHHHHHHHHhh
Q 007711          382 YAPNGTLFEH-----------------IHIK--ESEHL--DWGMRLRIA--------------------MGMAYCLEHMH  420 (592)
Q Consensus       382 y~~~gsL~~~-----------------l~~~--~~~~l--~~~~~~~ia--------------------~~ia~gl~yLH  420 (592)
                      |+++-++.+.                 +|..  ....+  .+.....-.                    ......+..+.
T Consensus        87 ~i~G~~~~~~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (255)
T d1nd4a_          87 EVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLK  166 (255)
T ss_dssp             CCSSEETTTSCCCHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHH
T ss_pred             eeeccccccccccHHHHHHHHHHHHHHHccCChhhCCCcccchhhHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHH
Confidence            9987655331                 1100  00000  111110000                    00111222232


Q ss_pred             cC-----CCCeEeeCcCCCCeEEcCCCceEEecCCcchh
Q 007711          421 QL-----NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  454 (592)
Q Consensus       421 ~~-----~~~ivH~dLk~~NiLl~~~~~~ki~DfGla~~  454 (592)
                      ..     .+.++|+|+.+.|||++++..+-|.||+.+..
T Consensus       167 ~~~~~~~~~~liHgD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         167 ARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             HTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HhCCccCCceEEeCCCCCcceEEeCCceEEEEEchhccc
Confidence            11     12389999999999999887788999997653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.79  E-value=2.6e-05  Score=76.25  Aligned_cols=95  Identities=22%  Similarity=0.199  Sum_probs=72.2

Q ss_pred             ceeecccCCccccccCchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEecc
Q 007711            2 CVMCRNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD   81 (592)
Q Consensus         2 ~~~~l~l~~~~l~g~~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~   81 (592)
                      .|+.|+|++|+|+ .+|..+   .+|+.|++++|+++ .++.-   .+.|++|++++|.+. .+|. +..+++|+.++++
T Consensus        59 ~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          59 HLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             TCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccccccccc-cccc-hhhhccceeeccc
Confidence            4789999999999 788654   57899999999998 45532   246999999999998 7885 6789999999999


Q ss_pred             CcccccccChhhhcCCCCCEEECCCCCCC
Q 007711           82 NNDFVGSLSPEIYKLQVLSESQVDEGQLS  110 (592)
Q Consensus        82 ~N~~~g~ip~~~~~~~~l~~l~l~~n~l~  110 (592)
                      +|.+++..+ .   ...+..+++..+...
T Consensus       129 ~~~~~~~~~-~---~~~l~~l~~~~~~~~  153 (353)
T d1jl5a_         129 NNSLKKLPD-L---PPSLEFIAAGNNQLE  153 (353)
T ss_dssp             SSCCSCCCC-C---CTTCCEEECCSSCCS
T ss_pred             ccccccccc-c---cccccchhhcccccc
Confidence            999874432 2   344555555554443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=9.5e-07  Score=77.19  Aligned_cols=81  Identities=19%  Similarity=0.055  Sum_probs=49.0

Q ss_pred             CCEEEeeCCccccCCCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccCcccccc--cChhhhcCCCCCEEEC
Q 007711           27 IKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGS--LSPEIYKLQVLSESQV  104 (592)
Q Consensus        27 L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~N~~~g~--ip~~~~~~~~l~~l~l  104 (592)
                      .+.|+++++...   | .+..+..+..+.+.+|... .++.....+++|++|+|++|+++..  ++..+..+++|+.|+|
T Consensus        24 ~~~Ldls~l~~~---~-~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~L   98 (162)
T d1koha1          24 QQALDLKGLRSD---P-DLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL   98 (162)
T ss_dssp             SCCBCCCCCSSC---T-TTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCC
T ss_pred             hCeeecccCCCC---c-hhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccc
Confidence            445555544322   2 2444555555555555433 4444445677888888888888743  3445667888888888


Q ss_pred             CCCCCCcc
Q 007711          105 DEGQLSSA  112 (592)
Q Consensus       105 ~~n~l~g~  112 (592)
                      ++|+++..
T Consensus        99 s~N~i~~l  106 (162)
T d1koha1          99 SGNELKSE  106 (162)
T ss_dssp             TTSCCCCG
T ss_pred             ccCccccc
Confidence            88888753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=6.4e-06  Score=78.88  Aligned_cols=111  Identities=19%  Similarity=0.185  Sum_probs=66.4

Q ss_pred             eeecccCCcccccc-CchhhcCCCCCCEEEeeCCccccCCCccccCCCCCCeeeccC-Cccccc-CCccccCCCCCCeEe
Q 007711            3 VMCRNLKDLCLEGT-LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH-NNFSGP-LPNDLGINHSLTILL   79 (592)
Q Consensus         3 ~~~l~l~~~~l~g~-~p~~~~~l~~L~~l~l~~n~l~g~iP~~~~~l~~L~~l~l~~-N~l~g~-iP~~~~~~~~L~~l~   79 (592)
                      |+.|||+++.+++. +..-+.++++|+.|+|+++.+++..+..++.+++|+.|+|++ ++++.. +..-...+++|+.|+
T Consensus        48 L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~  127 (284)
T d2astb2          48 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN  127 (284)
T ss_dssp             CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccc
Confidence            56777777776644 344467778888888888877777777777777788888777 344421 111122344444444


Q ss_pred             ccCc-----------------------------ccccc-cChhhhcCCCCCEEECCCC-CCCccc
Q 007711           80 LDNN-----------------------------DFVGS-LSPEIYKLQVLSESQVDEG-QLSSAA  113 (592)
Q Consensus        80 l~~N-----------------------------~~~g~-ip~~~~~~~~l~~l~l~~n-~l~g~~  113 (592)
                      +++.                             .++.. +..-..++++|++|++++| .++...
T Consensus       128 ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~  192 (284)
T d2astb2         128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC  192 (284)
T ss_dssp             CCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred             cccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchh
Confidence            4431                             12211 2222345788999999875 466543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.61  E-value=8.2e-06  Score=80.38  Aligned_cols=109  Identities=19%  Similarity=0.153  Sum_probs=76.4

Q ss_pred             eeecccCCccccc----cCchhhcCCCCCCEEEeeCCccccC-----CCccccCCCCCCeeeccCCccccc----CCccc
Q 007711            3 VMCRNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGI-----IPEGFGELEELEVLDFGHNNFSGP----LPNDL   69 (592)
Q Consensus         3 ~~~l~l~~~~l~g----~~p~~~~~l~~L~~l~l~~n~l~g~-----iP~~~~~l~~L~~l~l~~N~l~g~----iP~~~   69 (592)
                      |+.++++.|.++-    .+...+..++.|+.|+|+.|++...     +...+..+++|+.|+|++|.++..    +...+
T Consensus       160 L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l  239 (344)
T d2ca6a1         160 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  239 (344)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             cceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccc
Confidence            5567777777652    2455567788888888888887632     344466778888889888887643    34456


Q ss_pred             cCCCCCCeEeccCcccccccChhhh------cCCCCCEEECCCCCCCc
Q 007711           70 GINHSLTILLLDNNDFVGSLSPEIY------KLQVLSESQVDEGQLSS  111 (592)
Q Consensus        70 ~~~~~L~~l~l~~N~~~g~ip~~~~------~~~~l~~l~l~~n~l~g  111 (592)
                      ..+++|+.|+|++|.+++.-...++      ....|++|++++|+++.
T Consensus       240 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            6788888888888888765333332      23578888888888864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=7.2e-06  Score=83.50  Aligned_cols=110  Identities=20%  Similarity=0.217  Sum_probs=78.3

Q ss_pred             eeecccCCccccccCch----hh-cCCCCCCEEEeeCCccccCCCcc----ccCCCCCCeeeccCCccccc----CCccc
Q 007711            3 VMCRNLKDLCLEGTLAP----EI-QSLTHIKSIILRNNSFSGIIPEG----FGELEELEVLDFGHNNFSGP----LPNDL   69 (592)
Q Consensus         3 ~~~l~l~~~~l~g~~p~----~~-~~l~~L~~l~l~~n~l~g~iP~~----~~~l~~L~~l~l~~N~l~g~----iP~~~   69 (592)
                      +..++++.|.++..-..    .+ .....|+.+++++|.++..-...    +....+|+.|+|++|+++..    ++..+
T Consensus       285 l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l  364 (460)
T d1z7xw1         285 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL  364 (460)
T ss_dssp             CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhh
Confidence            56678888887643222    22 23467999999999888653333    34456899999999998753    34444


Q ss_pred             c-CCCCCCeEeccCccccc----ccChhhhcCCCCCEEECCCCCCCcc
Q 007711           70 G-INHSLTILLLDNNDFVG----SLSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        70 ~-~~~~L~~l~l~~N~~~g----~ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                      . ....|+.|+|++|.++.    .++..+..+++|++|++++|+|+..
T Consensus       365 ~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             hcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHH
Confidence            3 35679999999999974    3556677789999999999999753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.55  E-value=9.8e-06  Score=79.79  Aligned_cols=110  Identities=19%  Similarity=0.213  Sum_probs=81.6

Q ss_pred             eeecccCCcccc--c--cC---------chhhcCCCCCCEEEeeCCccccC----CCccccCCCCCCeeeccCCccccc-
Q 007711            3 VMCRNLKDLCLE--G--TL---------APEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP-   64 (592)
Q Consensus         3 ~~~l~l~~~~l~--g--~~---------p~~~~~l~~L~~l~l~~n~l~g~----iP~~~~~l~~L~~l~l~~N~l~g~-   64 (592)
                      |+.|+|++|.|+  |  .+         .......+.|+.+.++.|.++-.    +...+..++.|+.|+|++|+++.. 
T Consensus       123 L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g  202 (344)
T d2ca6a1         123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG  202 (344)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH
T ss_pred             chheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccc
Confidence            678888888752  1  11         11234678899999999988632    344456678999999999998642 


Q ss_pred             ----CCccccCCCCCCeEeccCcccccc----cChhhhcCCCCCEEECCCCCCCcc
Q 007711           65 ----LPNDLGINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSSA  112 (592)
Q Consensus        65 ----iP~~~~~~~~L~~l~l~~N~~~g~----ip~~~~~~~~l~~l~l~~n~l~g~  112 (592)
                          +...+..+++|+.|+|++|.|+..    +...+..+++|++|++++|.+++.
T Consensus       203 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             cccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence                334567788999999999998743    455677899999999999999854

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=2e-05  Score=75.35  Aligned_cols=85  Identities=20%  Similarity=0.186  Sum_probs=54.3

Q ss_pred             CCCCCCEEEeeCCccccC-CCccccCCCCCCeeeccCCcccccCCccccCCCCCCeEeccC-cccccc-cChhhhcCCCC
Q 007711           23 SLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN-NDFVGS-LSPEIYKLQVL   99 (592)
Q Consensus        23 ~l~~L~~l~l~~n~l~g~-iP~~~~~l~~L~~l~l~~N~l~g~iP~~~~~~~~L~~l~l~~-N~~~g~-ip~~~~~~~~l   99 (592)
                      ...+|++|+|+++.++.. ++..+..+++|++|+|+++.+++..+..+..+++|+.|+|++ +.++.. +..-+.++++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            445677777777776644 344456677777777777777766666677777777777776 445421 22223456777


Q ss_pred             CEEECCCC
Q 007711          100 SESQVDEG  107 (592)
Q Consensus       100 ~~l~l~~n  107 (592)
                      ++|+++++
T Consensus       124 ~~L~ls~c  131 (284)
T d2astb2         124 DELNLSWC  131 (284)
T ss_dssp             CEEECCCC
T ss_pred             cccccccc
Confidence            77777763

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.24  E-value=0.00051  Score=68.37  Aligned_cols=80  Identities=14%  Similarity=0.172  Sum_probs=46.0

Q ss_pred             cccCcCCCeEEEEEEeCC-CcEEEEEEeeeccc---CCCchhHHHHHHHHHHHHhcC-CC--CceeeeeEEEecCCCcce
Q 007711          304 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASA---KDWPKNLEVQFRKKIDTLSKV-NH--KNFVNLIGFCEEEEPFTR  376 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~-~~~vavk~~~~~~~---~~~~~~~~~~f~~e~~~l~~l-~H--~niv~l~g~~~~~~~~~~  376 (592)
                      +.||.|....||+....+ ++.+.||.-.....   ..++... .....|.+.|+.+ .+  ..+.+++++...    ..
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~-~R~~~E~~~L~~~~~~~p~~vP~v~~~d~~----~~  106 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTI-DRARIESSALIRQGEHVPHLVPRVFYSDTE----MA  106 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCT-THHHHHHHHHHHHHTTCGGGSCCEEEEETT----TT
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCH-HHHHHHHHHHHHhhhhCCCCcceEEEEcCC----CC
Confidence            568999999999998654 56787875432111   1111111 1234577766655 22  345666665433    34


Q ss_pred             EEEEeeCCCCCc
Q 007711          377 MMVFEYAPNGTL  388 (592)
Q Consensus       377 ~lv~Ey~~~gsL  388 (592)
                      ++||||+++..+
T Consensus       107 ~lvmE~L~~~~~  118 (392)
T d2pula1         107 VTVMEDLSHLKI  118 (392)
T ss_dssp             EEEECCCTTSEE
T ss_pred             EEEEeccCCccc
Confidence            799999976443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.78  E-value=0.00024  Score=61.65  Aligned_cols=63  Identities=16%  Similarity=0.183  Sum_probs=26.0

Q ss_pred             CCCCCCeeeccCCcccccCC----ccccCCCCCCeEeccCcccccccC----hhhhcCCCCCEEECCCCCC
Q 007711           47 ELEELEVLDFGHNNFSGPLP----NDLGINHSLTILLLDNNDFVGSLS----PEIYKLQVLSESQVDEGQL  109 (592)
Q Consensus        47 ~l~~L~~l~l~~N~l~g~iP----~~~~~~~~L~~l~l~~N~~~g~ip----~~~~~~~~l~~l~l~~n~l  109 (592)
                      ..+.|+.|+|++|.+...-.    ..+...+.|+.|+|++|.++..--    ..+...++|++|++++|.+
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            34445555555554432111    112233445555555555443211    1222334455555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.00  E-value=0.0014  Score=56.51  Aligned_cols=108  Identities=17%  Similarity=0.133  Sum_probs=76.6

Q ss_pred             ceeecccCCc-ccccc----CchhhcCCCCCCEEEeeCCccccC----CCccccCCCCCCeeeccCCcccccC----Ccc
Q 007711            2 CVMCRNLKDL-CLEGT----LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGPL----PND   68 (592)
Q Consensus         2 ~~~~l~l~~~-~l~g~----~p~~~~~l~~L~~l~l~~n~l~g~----iP~~~~~l~~L~~l~l~~N~l~g~i----P~~   68 (592)
                      .|+.|+|+++ .++..    +-..+...+.|+.|+|++|.+...    +...+...+.|+.|+|++|.++..-    =..
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~a   95 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS   95 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHH
Confidence            3678899874 45432    444577888999999999988743    2233445688999999999987531    124


Q ss_pred             ccCCCCCCeEeccCccccc-------ccChhhhcCCCCCEEECCCCCC
Q 007711           69 LGINHSLTILLLDNNDFVG-------SLSPEIYKLQVLSESQVDEGQL  109 (592)
Q Consensus        69 ~~~~~~L~~l~l~~N~~~g-------~ip~~~~~~~~l~~l~l~~n~l  109 (592)
                      +...++|+.|+|++|.+..       .+...+...++|..|+++.+..
T Consensus        96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            5667889999999987552       1445556678999999977654

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.015  Score=55.73  Aligned_cols=69  Identities=9%  Similarity=0.018  Sum_probs=41.3

Q ss_pred             eEEEEEEeCCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCce--eeeeE-----EEecCCCcceEEEEeeCC
Q 007711          312 GTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF--VNLIG-----FCEEEEPFTRMMVFEYAP  384 (592)
Q Consensus       312 g~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~ni--v~l~g-----~~~~~~~~~~~lv~Ey~~  384 (592)
                      -.||+...++|..+++|+......      ..+++..|.+.+..+....+  +..+.     .....+  ..+.+++|++
T Consensus        36 N~vy~v~~~dg~~~VlK~~rp~~~------s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~--~~~~l~~~~~  107 (325)
T d1zyla1          36 NRVYQFQDEDRRRFVVKFYRPERW------TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQG--FYFAVFPSVG  107 (325)
T ss_dssp             SEEEEECCTTCCCEEEEEECTTTS------CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETT--EEEEEEECCC
T ss_pred             ceeEEEEcCCCCEEEEEEeCCCCC------CHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeee--EEEEEEeecC
Confidence            479999999999999987643221      23557778887776643222  11111     111122  4578999987


Q ss_pred             CCCc
Q 007711          385 NGTL  388 (592)
Q Consensus       385 ~gsL  388 (592)
                      +..+
T Consensus       108 G~~~  111 (325)
T d1zyla1         108 GRQF  111 (325)
T ss_dssp             CEEC
T ss_pred             CcCC
Confidence            6433

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.48  E-value=0.0015  Score=56.18  Aligned_cols=107  Identities=18%  Similarity=0.114  Sum_probs=54.4

Q ss_pred             eeecccCC-cccccc----CchhhcCCCCCCEEEeeCCccccC----CCccccCCCCCCeeeccCCcccccC----Cccc
Q 007711            3 VMCRNLKD-LCLEGT----LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGPL----PNDL   69 (592)
Q Consensus         3 ~~~l~l~~-~~l~g~----~p~~~~~l~~L~~l~l~~n~l~g~----iP~~~~~l~~L~~l~l~~N~l~g~i----P~~~   69 (592)
                      |+.|+|++ +.++..    +-..+...++|+.|+|++|.++..    +-..+...+.++.+++++|.++..-    -..+
T Consensus        19 L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l   98 (166)
T d1io0a_          19 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL   98 (166)
T ss_dssp             CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG
T ss_pred             CcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHH
Confidence            45566665 334211    333445666666777776666533    1122233456666666666654321    1334


Q ss_pred             cCCCCCCeEec--cCccccc----ccChhhhcCCCCCEEECCCCCC
Q 007711           70 GINHSLTILLL--DNNDFVG----SLSPEIYKLQVLSESQVDEGQL  109 (592)
Q Consensus        70 ~~~~~L~~l~l--~~N~~~g----~ip~~~~~~~~l~~l~l~~n~l  109 (592)
                      ...++|+.++|  +.|.+..    .|-..+...++|+.|+++.++.
T Consensus        99 ~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          99 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            44555655333  4455532    2344445566666666655443

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.83  E-value=0.034  Score=54.61  Aligned_cols=72  Identities=14%  Similarity=0.164  Sum_probs=45.7

Q ss_pred             cccCcCCCeEEEEEEeCCC--------cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcCCCCce-eeeeEEEecCCCc
Q 007711          304 NVIGSSPIGTVYKGTLSNG--------VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF-VNLIGFCEEEEPF  374 (592)
Q Consensus       304 ~~lG~G~~g~Vy~g~~~~~--------~~vavk~~~~~~~~~~~~~~~~~f~~e~~~l~~l~H~ni-v~l~g~~~~~~~~  374 (592)
                      +.|+.|-.-.+|+...+++        ..|.+++.- .. .     ...+..+|..+++.+.-.++ .++++++..    
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~~-~-----~~idr~~E~~i~~~ls~~gl~Pkll~~~~~----  116 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NP-E-----TESHLVAESVIFTLLSERHLGPKLYGIFSG----  116 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-SC-C-----CHHHHHHHHHHHHHHHHTTSSSCEEEEETT----
T ss_pred             EEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-Cc-c-----hhhHHHHHHHHHHHHHhCCCCCeEEEEcCC----
Confidence            5688888899999987543        345555432 11 1     12345578888887743344 467777632    


Q ss_pred             ceEEEEeeCCCCCc
Q 007711          375 TRMMVFEYAPNGTL  388 (592)
Q Consensus       375 ~~~lv~Ey~~~gsL  388 (592)
                        .+|+||+++-.+
T Consensus       117 --g~I~efi~g~~l  128 (395)
T d1nw1a_         117 --GRLEEYIPSRPL  128 (395)
T ss_dssp             --EEEECCCCEEEC
T ss_pred             --ceEEEEeccccC
Confidence              589999987544

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.73  E-value=0.33  Score=45.29  Aligned_cols=29  Identities=24%  Similarity=0.203  Sum_probs=26.3

Q ss_pred             CeEeeCcCCCCeEEcCCCceEEecCCcch
Q 007711          425 PIAHNYLNSSAVHLTEDYAAKLSDLSFWN  453 (592)
Q Consensus       425 ~ivH~dLk~~NiLl~~~~~~ki~DfGla~  453 (592)
                      .++|+|+.+.||+++.+...-|.||+.+.
T Consensus       184 giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         184 GVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             ccccCCcchhhhhcccccceeEecccccc
Confidence            59999999999999998877899999865

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.11  E-value=0.071  Score=45.04  Aligned_cols=90  Identities=17%  Similarity=0.169  Sum_probs=61.2

Q ss_pred             hcCCCCCCEEEeeC-CccccC----CCccccCCCCCCeeeccCCcccccCC----ccccCCCCCCeEeccCccccccc--
Q 007711           21 IQSLTHIKSIILRN-NSFSGI----IPEGFGELEELEVLDFGHNNFSGPLP----NDLGINHSLTILLLDNNDFVGSL--   89 (592)
Q Consensus        21 ~~~l~~L~~l~l~~-n~l~g~----iP~~~~~l~~L~~l~l~~N~l~g~iP----~~~~~~~~L~~l~l~~N~~~g~i--   89 (592)
                      ..+.++|+.|+|++ |.++..    +-..+...+.|+.|+|++|.++..--    ..+....+++.+++++|.++..-  
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            45678999999987 456422    22334567889999999998865422    23345678999999999887442  


Q ss_pred             --ChhhhcCCCCCEEECC--CCCCC
Q 007711           90 --SPEIYKLQVLSESQVD--EGQLS  110 (592)
Q Consensus        90 --p~~~~~~~~l~~l~l~--~n~l~  110 (592)
                        -..+...++|+.++|+  .|.+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHhCccccEEeeccCCCcCc
Confidence              3445677888876664  55554