Citrus Sinensis ID: 007713


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590--
MPSTANVGPQEMPRPLEPINLLAARNERESVQIALRPKVSWSSSSTAGVVQVQCSDLCSASGDRLVVGQSLMLRRVVPMLGVPDALVPLDLPVCQISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITSKADTELSSQCLGKGEKHRLFMELRNCLDNVEPIEGKPLHEVVERAKSTATTLRRVIFSPLFSEFFSDNGPIDMMDEDAISNLSVRVKLSLTVWDFILPATPSLPAVIGISDTVIEDRFGVRHGSDEWYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKEIELLRTKAHWKKAYFYLWDEPLNMEHYSSVRNMASELHAYAPDARVLTTYYCGPSDAPLGPTPFESFVKVPKFLRPHTQIYCTSEWVLGNREDLVKDIVTELQPENGEEWWTYVCMGPSDPHPNWHLGMRGSQHRAVMWRVWKEGGTGFLYWGANCYEKATVPSAEIRFRRGLPPGDGVLFYPGEVFSSSRQPVASLRLERILSGLQDIEYLNLYASRYGRDEGLALLEKTGTYQGPERYTIEHLPIDVMRGEIFNACRH
ccccccccccccccccccccHHHHcccEEEEEEEEEccccccccccccEEEEEEccccccccccEEEEEEEEEEEEcccccccccccccccccccEEEccccccEEEEEEEcccccccccEEEEEEEEEccccEEEccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHccccEEEEEEEEEEEccccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHc
ccccccccccccccccHHHHHHHHcccccEEEEEEccccEcccccccEEEEEEEcccccccccEEEEccEEEEEEEcccccccccccccccccccEEEccccEEEEEEEEEcccccccccEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccHHHHHccEEEEEEEEEEEEEEcccccccccEEccccccHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccHHHHccccHHHHHcccccHcccccHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHcccccccccccEEEccccccccccHHHHHHHHHHHccccccEEEEEEEEccccccccHHccccHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcc
mpstanvgpqemprplepiNLLAARNERESVQIAlrpkvswsssstagVVQVQCSDlcsasgdrlVVGQSLMLRRVvpmlgvpdalvpldlpvcqislipgettAVWVsidapyaqppglyegeiiitskadtelssqclgkgekHRLFMELRNCldnvepiegkplhEVVERAKSTATTLRRVIFsplfseffsdngpidmmdedaiSNLSVRVKLSLTVWdfilpatpslpavigisdtviedrfgvrhgsdEWYEALDQHFKWLLQYRIspffcrwgesmrvltytcpwpadhpksdeyfsdprlaayavpyspvlssndgakdYVRKEIELLRTKAHWKKAYFylwdeplnmehysSVRNMASElhayapdarvlttyycgpsdaplgptpfesfvkvpkflrphtqiyctsewvlgnREDLVKDIVTElqpengeewwtyvcmgpsdphpnwhlgmrgsqhRAVMWRVWKeggtgflywgancyekatvpsaeirfrrglppgdgvlfypgevfsssrqpvASLRLERILSGLQDIEYLNLYASRYGRDEGLALLEKtgtyqgperytiehlpidvmRGEIFNACRH
mpstanvgpqemprpLEPINLLAARNERESVQIALrpkvswsssstAGVVQVQCSDLCSASGDRLVVGQSLMLRRVVPMLGVPDALVPLDLPVCQISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITSKADTELSSQCLGKGEKHRLFMELRNCLDNvepiegkplhevVERAKSTATTLRRVIFSPLFSEFFSDNGPIDMMDEDAISNLSVRVKLSLTVWDFILPATPSLPAVIGISDTVIEDRFGVRHGSDEWYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVpyspvlssndgaKDYVRKEIELLRTKAHWKKAYFYLWDEPLNMEHYSSVRNMASELHAYAPDARVLTTYYCGPSDAPLGPTPFESFVKVPKFLRPHTQIYctsewvlgnREDLVKDIVTELQPENGEEWWTYVCMGPSDPHPNWHLGMRGSQHRAVMWRVWKEGGTGFLYWGANCYEKATVPSAEIRFRRGLPPGDGVLFYPGEVFSSSRQPVASLRLERILSGLQDIEYLNLYASRYGRDEGLALLEktgtyqgperytiehlpidvmRGEIFNACRH
MPSTANVGPQEMPRPLEPINLLAARNERESVQIALRPKVSWSSSSTAGVVQVQCSDLCSASGDRLVVGQSLMLRRVVPMLGVPDALVPLDLPVCQISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITSKADTELSSQCLGKGEKHRLFMELRNCLDNVEPIEGKPLHEVVERAKSTATTLRRVIFSPLFSEFFSDNGPIDMMDEDAISNLSVRVKLSLTVWDFILPATPSLPAVIGISDTVIEDRFGVRHGSDEWYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKEIELLRTKAHWKKAYFYLWDEPLNMEHYSSVRNMASELHAYAPDARVLTTYYCGPSDAPLGPTPFESFVKVPKFLRPHTQIYCTSEWVLGNREDLVKDIVTELQPENGEEWWTYVCMGPSDPHPNWHLGMRGSQHRAVMWRVWKEGGTGFLYWGANCYEKATVPSAEIRFRRGLPPGDGVLFYPGEVFSSSRQPVASLRLERILSGLQDIEYLNLYASRYGRDEGLALLEKTGTYQGPERYTIEHLPIDVMRGEIFNACRH
*********************************AL***VSW***STAGVVQVQCSDLCSASGDRLVVGQSLMLRRVVPMLGVPDALVPLDLPVCQISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITSKADTELSSQCLGKGEKHRLFMELRNCLDNVEPIEGKPLHEVVERAKSTATTLRRVIFSPLFSEFFSDNGPIDMMDEDAISNLSVRVKLSLTVWDFILPATPSLPAVIGISDTVIEDRFGVRHGSDEWYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKEIELLRTKAHWKKAYFYLWDEPLNMEHYSSVRNMASELHAYAPDARVLTTYYCGPSDAPLGPTPFESFVKVPKFLRPHTQIYCTSEWVLGNREDLVKDIVTELQPENGEEWWTYVCMGPSDPHPNWHLGMRGSQHRAVMWRVWKEGGTGFLYWGANCYEKATVPSAEIRFRRGLPPGDGVLFYPGEVFSSSRQPVASLRLERILSGLQDIEYLNLYASRYGRDEGLALLEKTGTYQGPERYTIEHLPIDVMRGEIFNA***
*PSTANVGPQEMPRPLEPINLLAARNERESVQIALRPKVSWSSSSTA***QVQCSDLCSASGDRLVVGQSLMLRRVVPMLGVPDALVPLDLPVCQISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITSKADTELSSQCLGKGEKHRLFMELRNCLDNVEPIEGKPLHEVVERAKSTATTLRRVIFSPLFSEFFSDNGPIDMMDEDAISNLSVRVKLSLTVWDFILPATPSLPAVIGISDTVIEDRFGVRHGSDEWYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKEIELLRTKAHWKKAYFYLWDEPLNMEHYSSVRNMASELHAYAPDARVLTTYYCGPSDAPLGPTPFESFVKVPKFLRPHTQIYCTSEWVLGNREDLVKDIVTELQPENGEEWWTYVCMGPSDPHPNWHLGMRGSQHRAVMWRVWKEGGTGFLYWGANCYEKATVPSAEIRFRRGLPPGDGVLFYPGEVFSSSRQPVASLRLERILSGLQDIEYLNLYASRYGRDEGLALLEKTGTYQGPERYTIEHLPIDVMRGEIFNA*R*
**********EMPRPLEPINLLAARNERESVQIALRP*************QVQCSDLCSASGDRLVVGQSLMLRRVVPMLGVPDALVPLDLPVCQISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITSKADTELSSQCLGKGEKHRLFMELRNCLDNVEPIEGKPLHEVVERAKSTATTLRRVIFSPLFSEFFSDNGPIDMMDEDAISNLSVRVKLSLTVWDFILPATPSLPAVIGISDTVIEDRFGVRHGSDEWYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKEIELLRTKAHWKKAYFYLWDEPLNMEHYSSVRNMASELHAYAPDARVLTTYYCGPSDAPLGPTPFESFVKVPKFLRPHTQIYCTSEWVLGNREDLVKDIVTELQPENGEEWWTYVCMGPSDPHPNWHLGMRGSQHRAVMWRVWKEGGTGFLYWGANCYEKATVPSAEIRFRRGLPPGDGVLFYPGEVFSSSRQPVASLRLERILSGLQDIEYLNLYASRYGRDEGLALLEKTGTYQGPERYTIEHLPIDVMRGEIFNACRH
************PRPLEPINLLAARNERESVQIALRPKVSWSSSSTAGVVQVQCSDLCSASGDRLVVGQSLMLRRVVPMLGVPDALVPLDLPVCQISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITSKADTELSSQCLGKGEKHRLFMELRNCLDNVEPIEGKPLHEVVERAKSTATTLRRVIFSPLFSEFFSDNGPIDMMDEDAISNLSVRVKLSLTVWDFILPATPSLPAVIGISDTVIEDRFGVRHGSDEWYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKEIELLRTKAHWKKAYFYLWDEPLNMEHYSSVRNMASELHAYAPDARVLTTYYCGPSDAPLGPTPFESFVKVPKFLRPHTQIYCTSEWVLGNREDLVKDIVTELQPENGEEWWTYVCMGPSDPHPNWHLGMRGSQHRAVMWRVWKEGGTGFLYWGANCYEKATVPSAEIRFRRGLPPGDGVLFYPGEVFSSSRQPVASLRLERILSGLQDIEYLNLYASRYGRDEGLALLEKTGTYQGPERYTIEHLPIDVMRGEIFNACRH
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MPSTANVGPQEMPRPLEPINLLAARNERESVQIALRPKVSWSSSSTAGVVQVQCSDLCSASGDRLVVGQSLMLRRVVPMLGVPDALVPLDLPVCQISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITSKADTELSSQCLGKGEKHRLFMELRNCLDNVEPIEGKPLHEVVERAKSTATTLRRVIFSPLFSEFFSDNGPIDMMDEDAISNLSVRVKLSLTVWDFILPATPSLPAVIGISDTVIEDRFGVRHGSDEWYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKEIELLRTKAHWKKAYFYLWDEPLNMEHYSSVRNMASELHAYAPDARVLTTYYCGPSDAPLGPTPFESFVKVPKFLRPHTQIYCTSEWVLGNREDLVKDIVTELQPENGEEWWTYVCMGPSDPHPNWHLGMRGSQHRAVMWRVWKEGGTGFLYWGANCYEKATVPSAEIRFRRGLPPGDGVLFYPGEVFSSSRQPVASLRLERILSGLQDIEYLNLYASRYGRDEGLALLEKTGTYQGPERYTIEHLPIDVMRGEIFNACRH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query592
356518975649 PREDICTED: uncharacterized protein LOC10 0.998 0.910 0.815 0.0
255538584651 conserved hypothetical protein [Ricinus 0.998 0.907 0.826 0.0
449460114649 PREDICTED: uncharacterized protein LOC10 0.996 0.909 0.814 0.0
224132110652 predicted protein [Populus trichocarpa] 0.994 0.903 0.821 0.0
356509690644 PREDICTED: uncharacterized protein LOC10 0.989 0.909 0.797 0.0
225458333638 PREDICTED: uncharacterized protein LOC10 0.993 0.921 0.797 0.0
297852256643 hypothetical protein ARALYDRAFT_473837 [ 0.998 0.919 0.774 0.0
42562571643 uncharacterized protein [Arabidopsis tha 0.998 0.919 0.761 0.0
7767671687 F27F5.22 [Arabidopsis thaliana] 0.998 0.860 0.699 0.0
115473013658 Os07g0581300 [Oryza sativa Japonica Grou 0.998 0.898 0.709 0.0
>gi|356518975|ref|XP_003528150.1| PREDICTED: uncharacterized protein LOC100782659 [Glycine max] Back     alignment and taxonomy information
 Score = 1038 bits (2683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/592 (81%), Positives = 538/592 (90%), Gaps = 1/592 (0%)

Query: 1   MPSTANVGPQEMPRPLEPINLLAARNERESVQIALRPKVSWSSSSTAGVVQVQCSDLCSA 60
           MPSTANVGPQ+MPR LEPINLLAARNERESVQIA+RPKVSWS SS AG VQ+QCSDLCS 
Sbjct: 57  MPSTANVGPQDMPRHLEPINLLAARNERESVQIAIRPKVSWSGSSVAGTVQIQCSDLCST 116

Query: 61  SGDRLVVGQSLMLRRVVPMLGVPDALVPLDLPVCQISLIPGETTAVWVSIDAPYAQPPGL 120
           SGDRL+VGQSL+LRRVVP+LGVPDALVP+DLPV QI+L PGETTA+W+SID P +QPPG 
Sbjct: 117 SGDRLIVGQSLLLRRVVPILGVPDALVPVDLPVSQINLFPGETTALWISIDVPSSQPPGQ 176

Query: 121 YEGEIIITS-KADTELSSQCLGKGEKHRLFMELRNCLDNVEPIEGKPLHEVVERAKSTAT 179
           YEGEI IT+ KAD E   Q L K EKH+L+ +L+ CLD VEPI+GKPL EVVER KS  T
Sbjct: 177 YEGEIAITAIKADAESPVQILSKVEKHQLYRDLKGCLDIVEPIDGKPLDEVVERVKSATT 236

Query: 180 TLRRVIFSPLFSEFFSDNGPIDMMDEDAISNLSVRVKLSLTVWDFILPATPSLPAVIGIS 239
           +LRR++ SP FSEFFSDNGP+D+MDEDAIS+LS+R+KL+LTVW+F+LP TPSLPAV GIS
Sbjct: 237 SLRRILLSPSFSEFFSDNGPVDVMDEDAISSLSIRMKLNLTVWEFVLPETPSLPAVFGIS 296

Query: 240 DTVIEDRFGVRHGSDEWYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKS 299
           DTVIEDRFGV+ G+ EWYEALDQHFKWLLQYRISP+FC+W + MRVLTYT PWPADHPKS
Sbjct: 297 DTVIEDRFGVQQGTAEWYEALDQHFKWLLQYRISPYFCKWADGMRVLTYTSPWPADHPKS 356

Query: 300 DEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKEIELLRTKAHWKKAYFYLWDEPLNMEHY 359
           DEYFSDPRLAAYAVPY  V+S ND AKDY++K++E+LRTK HW+KAYFYLWDEPLN+E Y
Sbjct: 357 DEYFSDPRLAAYAVPYKQVVSGNDAAKDYLQKQVEILRTKTHWRKAYFYLWDEPLNLEQY 416

Query: 360 SSVRNMASELHAYAPDARVLTTYYCGPSDAPLGPTPFESFVKVPKFLRPHTQIYCTSEWV 419
            SVRNMASE+HAYAPDAR+LTTYYCGP+DAPL PTPFE+FVKVP FLRPH QIYCTSEWV
Sbjct: 417 DSVRNMASEIHAYAPDARILTTYYCGPNDAPLAPTPFEAFVKVPSFLRPHNQIYCTSEWV 476

Query: 420 LGNREDLVKDIVTELQPENGEEWWTYVCMGPSDPHPNWHLGMRGSQHRAVMWRVWKEGGT 479
           LGNREDLVKDI+TELQPENGEEWWTYVCMGPSDPHPNWHLGMRG+QHRAVMWRVWKEGGT
Sbjct: 477 LGNREDLVKDIITELQPENGEEWWTYVCMGPSDPHPNWHLGMRGTQHRAVMWRVWKEGGT 536

Query: 480 GFLYWGANCYEKATVPSAEIRFRRGLPPGDGVLFYPGEVFSSSRQPVASLRLERILSGLQ 539
           GFLYWGANCYEKATV SAEI+FR GLPPGDGVL+YPGEVFS+S QPVASLRLERIL+GLQ
Sbjct: 537 GFLYWGANCYEKATVASAEIKFRHGLPPGDGVLYYPGEVFSTSHQPVASLRLERILNGLQ 596

Query: 540 DIEYLNLYASRYGRDEGLALLEKTGTYQGPERYTIEHLPIDVMRGEIFNACR 591
           DIEYL LYASRYGRDE +ALLE+TG Y GPERYT EH+PID MRG+IFNACR
Sbjct: 597 DIEYLRLYASRYGRDESIALLERTGVYFGPERYTFEHMPIDAMRGQIFNACR 648




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538584|ref|XP_002510357.1| conserved hypothetical protein [Ricinus communis] gi|223551058|gb|EEF52544.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449460114|ref|XP_004147791.1| PREDICTED: uncharacterized protein LOC101205217 [Cucumis sativus] gi|449476778|ref|XP_004154831.1| PREDICTED: uncharacterized LOC101205217 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224132110|ref|XP_002321258.1| predicted protein [Populus trichocarpa] gi|222862031|gb|EEE99573.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356509690|ref|XP_003523579.1| PREDICTED: uncharacterized protein LOC100799554 [Glycine max] Back     alignment and taxonomy information
>gi|225458333|ref|XP_002283035.1| PREDICTED: uncharacterized protein LOC100243809 [Vitis vinifera] gi|302142468|emb|CBI19671.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297852256|ref|XP_002894009.1| hypothetical protein ARALYDRAFT_473837 [Arabidopsis lyrata subsp. lyrata] gi|297339851|gb|EFH70268.1| hypothetical protein ARALYDRAFT_473837 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42562571|ref|NP_175129.3| uncharacterized protein [Arabidopsis thaliana] gi|30725314|gb|AAP37679.1| At1g45150 [Arabidopsis thaliana] gi|110742869|dbj|BAE99332.1| hypothetical protein [Arabidopsis thaliana] gi|332193963|gb|AEE32084.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7767671|gb|AAF69168.1|AC007915_20 F27F5.22 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|115473013|ref|NP_001060105.1| Os07g0581300 [Oryza sativa Japonica Group] gi|33146840|dbj|BAC79829.1| unknown protein [Oryza sativa Japonica Group] gi|50509223|dbj|BAD30493.1| unknown protein [Oryza sativa Japonica Group] gi|113611641|dbj|BAF22019.1| Os07g0581300 [Oryza sativa Japonica Group] gi|215737152|dbj|BAG96081.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query592
TAIR|locus:2028275643 AT1G45150 "AT1G45150" [Arabido 0.996 0.917 0.765 9.6e-263
TAIR|locus:2028275 AT1G45150 "AT1G45150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2528 (895.0 bits), Expect = 9.6e-263, P = 9.6e-263
 Identities = 453/592 (76%), Positives = 518/592 (87%)

Query:     1 MPSTANVGPQEMPRPLEPINLLAARNERESVQIALRPKVSWSSSSTAGVVQVQCSDLCSA 60
             MP+T NVG QE PR LEPINLLAARNERES QIA+RPKVSW++SS +G+VQVQCSDLCS+
Sbjct:    51 MPNTVNVGSQETPRALEPINLLAARNERESFQIAMRPKVSWAASSPSGIVQVQCSDLCSS 110

Query:    61 SGDRLVVGQSLMLRRVVPMLGVPDALVPLDLPVCQISLIPGETTAVWVSIDAPYAQPPGL 120
             +GDRLVVGQSL LRRVVP+LGVPDALVPLDLPV Q+SL PGET+ +WVSID P  QPPG 
Sbjct:   111 AGDRLVVGQSLKLRRVVPVLGVPDALVPLDLPVSQLSLFPGETSVIWVSIDVPTGQPPGQ 170

Query:   121 YEGEIIITS-KADTELSSQCLGKGEKHRLFMELRNCLDNVEPIEGKPLHEVVERAKSTAT 179
             YEGEIII++ K D   SS  L K EK +L +EL  CLD +EPIEGKP+ EVVER K  ++
Sbjct:   171 YEGEIIISAMKTDGGGSSH-LAKHEKDQLCVELNTCLDIMEPIEGKPMDEVVERIKCASS 229

Query:   180 TLRRVIFSPLFSEFFSDNGPIDMMDEDAISNLSVRVKLSLTVWDFILPATPSLPAVIGIS 239
             +LRR++FSP FSEF S NG  DMM+ED +SNLS+R+KL LTVW+FI+P TPSLPAVIG+S
Sbjct:   230 SLRRILFSPSFSEFISTNGSTDMMEEDVVSNLSLRIKLRLTVWEFIIPVTPSLPAVIGVS 289

Query:   240 DTVIEDRFGVRHGSDEWYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKS 299
             DTVIEDRF V HGS++WY+ LD HFKWLLQYRISP+FC+WGESMRVLTYT PWPADHPKS
Sbjct:   290 DTVIEDRFAVEHGSEDWYKKLDLHFKWLLQYRISPYFCKWGESMRVLTYTSPWPADHPKS 349

Query:   300 DEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKEIELLRTKAHWKKAYFYLWDEPLNMEHY 359
             DEY SD RLAAYAVPY  V++ +D  + Y+RKE+E+LR+K HW KAYFYLWDEPLNMEH+
Sbjct:   350 DEYLSDSRLAAYAVPYRQVIAGDDSRESYLRKEVEILRSKPHWNKAYFYLWDEPLNMEHF 409

Query:   360 SSVRNMASELHAYAPDARVLTTYYCGPSDAPLGPTPFESFVKVPKFLRPHTQIYCTSEWV 419
              +VR MASE++AYAPD+RVLTTYYCGP DAPL PTPFESFVKVP  LRP+TQIYCTSEWV
Sbjct:   410 DNVRKMASEIYAYAPDSRVLTTYYCGPGDAPLAPTPFESFVKVPNLLRPYTQIYCTSEWV 469

Query:   420 LGNREDLVKDIVTELQPENGEEWWTYVCMGPSDPHPNWHLGMRGSQHRAVMWRVWKEGGT 479
             LGNREDLVKDI+ ELQ ENGEEWWTY+C+GPSDPHPNWHLGMRG+Q RAVMWRVWKEGGT
Sbjct:   470 LGNREDLVKDILDELQTENGEEWWTYICLGPSDPHPNWHLGMRGTQQRAVMWRVWKEGGT 529

Query:   480 GFLYWGANCYEKATVPSAEIRFRRGLPPGDGVLFYPGEVFSSSRQPVASLRLERILSGLQ 539
             GFLYWGANCYEKATVPSAE++FRRGLPPGDGVL+YPGEVFSSS +PVASLRLER+LSGLQ
Sbjct:   530 GFLYWGANCYEKATVPSAEVKFRRGLPPGDGVLYYPGEVFSSSSEPVASLRLERLLSGLQ 589

Query:   540 DIEYLNLYASRYGRDEGLALLEKTGTYQGPERYTIEHLPIDVMRGEIFNACR 591
             D EYL LY S+YGR+E + LLEKTG Y GPERYT+EH PIDV+RGE++N CR
Sbjct:   590 DYEYLKLYESKYGREEAMGLLEKTGVYTGPERYTLEHRPIDVLRGEVYNTCR 641


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.137   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      592       592   0.00084  120 3  11 22  0.40    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  630 (67 KB)
  Total size of DFA:  388 KB (2188 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  48.32u 0.10s 48.42t   Elapsed:  00:00:02
  Total cpu time:  48.32u 0.10s 48.42t   Elapsed:  00:00:02
  Start:  Fri May 10 11:13:36 2013   End:  Fri May 10 11:13:38 2013


GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.00141286
hypothetical protein (652 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query592
pfam1332067 pfam13320, DUF4091, Domain of unknown function (DU 1e-15
>gnl|CDD|222044 pfam13320, DUF4091, Domain of unknown function (DUF4091) Back     alignment and domain information
 Score = 71.4 bits (176), Expect = 1e-15
 Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 476 EGGTGFLYWGANCYEKATVPSAEIRFRRGLPPGDGVLFYPGEVFSSSRQPVASLRLERIL 535
            G  GFL W  N + +   P  + R+R   P GDG L YPGE      +PV+SLRLE + 
Sbjct: 1   YGLDGFLRWAYNFWNED--PWEDTRYR-AFPAGDGFLVYPGE----DGKPVSSLRLEVLR 53

Query: 536 SGLQDIEYLNLYAS 549
            G+QD E L L   
Sbjct: 54  EGIQDYEKLKLLEE 67


This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important. Length = 67

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 592
PF1332068 DUF4091: Domain of unknown function (DUF4091) 99.92
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 95.43
COG1470513 Predicted membrane protein [Function unknown] 88.37
PF01229486 Glyco_hydro_39: Glycosyl hydrolases family 39; Int 87.49
PF06030121 DUF916: Bacterial protein of unknown function (DUF 84.8
COG1470513 Predicted membrane protein [Function unknown] 84.03
>PF13320 DUF4091: Domain of unknown function (DUF4091) Back     alignment and domain information
Probab=99.92  E-value=1.5e-25  Score=182.76  Aligned_cols=68  Identities=47%  Similarity=0.862  Sum_probs=63.6

Q ss_pred             cCCCEEEEeecccccCCCCCCccccccCCCCCCceEEEccCccCCCCCCceechhHHHHHHHHHHHHHHHHHHh
Q 007713          476 EGGTGFLYWGANCYEKATVPSAEIRFRRGLPPGDGVLFYPGEVFSSSRQPVASLRLERILSGLQDIEYLNLYAS  549 (592)
Q Consensus       476 ~g~~GfL~W~~n~w~~~~~P~~~~~~~~~~~~GD~~LvYPG~~~~~~~~Pv~SiRle~lreGieDye~L~lL~~  549 (592)
                      ||++|||||+||+|+++  |+.+++++. |++||++|||||++   .++|++|||||+||+||||||||++|++
T Consensus         1 y~~~G~L~W~~~~w~~d--P~~d~~~~~-~~~GD~~lvYPg~~---~~~p~~SiRle~lr~G~qD~e~l~~l~~   68 (68)
T PF13320_consen    1 YGFDGFLRWAYNFWNED--PWEDTRFRG-FPAGDGFLVYPGED---TGGPVSSIRLEVLREGIQDYEYLRLLEK   68 (68)
T ss_pred             CCCCeEEEecccccccC--cccccCcCc-CCCCCeEEEecCCC---CCCcccCHHHHHHHHHHHHHHHHHHHhC
Confidence            68999999999999887  999999996 99999999999983   3899999999999999999999999985



>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>COG1470 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function Back     alignment and domain information
>COG1470 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query592
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.4 bits (122), Expect = 7e-07
 Identities = 77/491 (15%), Positives = 136/491 (27%), Gaps = 150/491 (30%)

Query: 22  LAA---RNERESVQIALRPKVSW---SSSSTAGVVQVQCSDLCSASGDRLVVGQSLM--- 72
           +A     + +  VQ  +  K+ W    + ++   V      L                  
Sbjct: 166 VALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 73  ----------LRRVVPMLGVPDALVPLDLPV------------CQISLIPGETT---AVW 107
                     LRR++      + L+ L   V            C+I L+   TT    V 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSCKI-LL---TTRFKQVT 278

Query: 108 VSIDAPYAQPPGLYEGEIIITSKADTELSSQCLGK--------------------GEKHR 147
             + A       L    + +T      L  + L                       E  R
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 148 LFMELRNCLDNVEPIEGKPLHEVVERAKSTATTLRRVIFSPLFSEF--FSDNGPI----- 200
              +     DN + +    L  ++E   S+   L    +  +F     F  +  I     
Sbjct: 339 ---DGLATWDNWKHVNCDKLTTIIE---SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 201 -----DMMDEDAISNLSVRVKLSLTVWDFILPATPSLPAVIGISDTVIEDRFGVRHGSDE 255
                D++  D +  ++   K SL              + I I    +E +       +E
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQ-------PKESTISIPSIYLELK---VKLENE 442

Query: 256 WYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPY 315
              AL  H   +  Y I   F                    P  D+YF           Y
Sbjct: 443 --YAL--HRSIVDHYNIPKTFDSDDLIP-------------PYLDQYF-----------Y 474

Query: 316 SPVLSSNDGAKDYVRKEIELLRTKAHWKKAYF-YLWDEPLNMEHYSSVRNMASELHAYAP 374
           S +     G   +  K IE       ++  +  + + E   + H S+  N +  +     
Sbjct: 475 SHI-----G---HHLKNIEHPERMTLFRMVFLDFRFLEQ-KIRHDSTAWNASGSI---LN 522

Query: 375 DARVLTTY--YCGPSDAPLGPTPFESFVK-VPKFL-RPHTQIYCTSEWVLGNREDLVKDI 430
             + L  Y  Y   +D    P  +E  V  +  FL +    + C+             D+
Sbjct: 523 TLQQLKFYKPYICDND----PK-YERLVNAILDFLPKIEENLICSKY----------TDL 567

Query: 431 V-TELQPENGE 440
           +   L  E+  
Sbjct: 568 LRIALMAEDEA 578


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query592
4ekj_A500 Beta-xylosidase; TIM-barrel fold, hemicellulase, h 95.39
>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides} Back     alignment and structure
Probab=95.39  E-value=0.18  Score=54.47  Aligned_cols=111  Identities=21%  Similarity=0.268  Sum_probs=69.6

Q ss_pred             hhH-HHHHHHHHHHHHhCCCCccccccCCccccccccCCCCCCCCCCcccccCcccccccccccCCCCCchhHHHHHHHH
Q 007713          254 DEW-YEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKE  332 (592)
Q Consensus       254 ~~~-f~~ldr~~~~~~~~ris~~f~~wg~~~~i~~y~~pw~~~~~~~~~y~~~~~~~~y~~~~~~~l~g~~~~~~~L~~~  332 (592)
                      ..| |+.+|+.++++++++|.+++.        ++++-+|-...+....++....        .  .+..+.|.+++.++
T Consensus        79 ~~y~~~~~D~~~d~~~~~G~~p~~~--------l~~~P~~~~~~~~~~~~~~~~~--------~--~~~~~~w~~~~~~~  140 (500)
T 4ekj_A           79 IVYDWTKIDQLYDALLAKGIKPFIE--------LGFTPEAMKTSDQTIFYWKGNT--------S--HPKLGPWRDLIDAF  140 (500)
T ss_dssp             EEECCHHHHHHHHHHHHTTCEEEEE--------ECCBCGGGCSSCCEETTTTEEC--------S--CCCHHHHHHHHHHH
T ss_pred             eecchHHHHHHHHHHHHCCCEEEEE--------EeCCchhhcCCCCccccccCCC--------C--cccHHHHHHHHHHH
Confidence            335 899999999999999998752        3444344221111111111100        0  12234788999999


Q ss_pred             HHHHHHc-cc--ccceeeeecCCCCCc--------cc-hHHHHHHHHHHHHhCCCCeEEEee
Q 007713          333 IELLRTK-AH--WKKAYFYLWDEPLNM--------EH-YSSVRNMASELHAYAPDARVLTTY  382 (592)
Q Consensus       333 ~~hl~~k-g~--~~~~y~~i~DEP~~~--------~~-~~~~~~~~~~i~~~~P~~ki~~t~  382 (592)
                      ++|+.++ |.  ....|+=++.||...        +. .+.++.+++.||++.|+++|....
T Consensus       141 ~~~~~~RYg~~~v~~w~~EvwNEp~~~~~~~~~~~~~y~~l~~~~~~aik~~~P~~~Vgg~~  202 (500)
T 4ekj_A          141 VHHLRARYGVEEVRTWFFEVWNEPNLDGFWEKADQAAYFELYDVTARAIKAIDPSLRVGGPA  202 (500)
T ss_dssp             HHHHHHHHCHHHHHTSEEEESSCTTSTTTSGGGCHHHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             HHHHHHhhCccccceeEEEEEECCCCccCCCCCCHHHHHHHHHHHHHHHHhhCCccccccCc
Confidence            9999764 32  234566689999521        22 345677889999999999997543




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query592
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 95.48
d1uhva2346 Beta-D-xylosidase, catalytic domain {Thermoanaerob 90.28
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]
Probab=95.48  E-value=0.046  Score=45.15  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=32.5

Q ss_pred             ceeecCCCeeEEEEEEEcCCCCCCceeEEEEEEEe
Q 007713           95 QISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITS  129 (592)
Q Consensus        95 ~~~v~~~~~q~lWv~v~VP~~a~pG~Y~g~i~v~~  129 (592)
                      ...|.+|+.+.+=++|.+|.++.+|.|..+++++.
T Consensus        52 ~~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i~~~a~~   86 (103)
T d1w8oa1          52 VEPLMPGRQAKGQVTITVPAGTTPGRYRVGATLRT   86 (103)
T ss_dssp             ECCBCTTCEEEEEEEEECCTTCCCEEEEEEEEEEE
T ss_pred             ceeeCCCCcEEEEEEEECCCCCCCceEEEEEEEEe
Confidence            35678999999999999999999999999999996



>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]} Back     information, alignment and structure