Citrus Sinensis ID: 007718

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-
Protein Sequence
MASEFESCVNYGLNLSKRIYYGKEPGSGRAVMPPGMTRQPESYLPEAVMVYAVVGEPQIVDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNSGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQSPSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQNLLLLVI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccEEcEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEEEEccccEEEEEEEEEEccEEEEEEEEEHHHHHHHHHHcccccccccccccEEEEEEcccccccEEEEEEEEEEEEEEEccEEEEEEEEEcccEEccccccccccEEEEEEEEcccccEEEcccccccEEEEEEcccEEEEEEEccccccccccEEEEEEEcccccccEEEEEcccccccccccEEEEEEccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHccccccEEEEEEEcccEEEcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccEEEEEcccccccccccHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccccccccccEEEEEEEccccccEEEEEEEEccccEEEEEEEccccccccHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccHHEEEEccccccccccccccccccccHcccccccEEEEEEcccccccccccccccccccccccccccEEccccEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEEEccccEEEEEEEEEEccEEEccEEEEHHHHHHHHHHHHHcccccccccEEEEEEEcccccccEEEEEEEEEHHHHHHcccEEEEEEcccccccccccccccccccEEEEccccccEEEEcccccccccccccHcccccccccccccccccccEEEEEEEccccccccEEEEcccccccccccEEEEEEccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccEEEEEEcccEEEEccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccEEEEEEEccccccccccHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHcccHEEEEEEccccccHHHccHcccHHHccccEEEEEEEEccccccEEEEEEEEccccEEEEEEEEcccccccHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MASEFESCVNYGLNLSKriyygkepgsgravmppgmtrqpesylpEAVMVYAVVgepqivdnpdvpsyqpyvhgkcqppaliplhmhgvemeVDCCLDTAFVAFNGSWRVHCIMagrqcdctiavplgergsllgVEVEIdgrsyqsklislddaeykenvgkskgdgrylkgqiytlripqvdggstlsikvnwsqkltyeegqfclsvpftfpayviplgrkipkseKIILNVNSGVSEQivgkcsshplKELSREVGKLSFSYEAEVkrwsnsdfkfsyTVAStdlfggvllqspslhdfdqrQIFClylfpgksqsrkvfrKDVVFLVDVSGSMQGVLLEQTKNALSASLsklnpqdsfniiafngethlfsSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLsdtsesipliflitdgtvgderGICNEIKSYltntrsisprictfgvglyCNHYFLQILAQIGrgyydsaydpgsvdYRIRRFFTAASSVFLTNMTletskhlnslelfpshipdfclecplivsgrysgnfgdsvqvsgtmadtSNFIIELKAqnakdipldrvMSQNLLLLVI
Flexible Loop (DISEMBL)
MASEFESCVNYGLNLSKRIYYGKEPGSGRAVMPPGMTRQPESYLPEAVMVYAVVGEPQIVDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSklislddaeykenvgkskgdgrylkGQIYTlripqvdggsTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNSGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQSPSLHDFDQRQIFCLYLfpgksqsrkVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLitdgtvgdeRGICNEIKSyltntrsispRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELkaqnakdipldrvmSQNLLLLVI
Low Complexity Region (SEG)
MASEFESCVNYGLNLSKRIYYGKEPGSGRAVMPPGMTRQPESYLPEAVMVYAVVGEPQIVDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNSGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQSPSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQNLLLLVI
Disordered region (IsUnstruct)
******SCVNYGLNLSKRIYYG********************YLPEAVMVYAVVGEPQIVDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENV****GDGRYLKGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNSGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQSPSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTK************QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQNLLLL**
Disordered Region (DISOPRED)
****FESCVNYGLNLSKRIY*************************EAVMVYAVVGE***************************LHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDA**************YLKGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNSGV********************************RWSNSDFKFSYTVASTDLFGGVLLQSPSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSD*SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFI**********IPLDRVMSQNLLLLVI
Disordered Region (DISEMBL)
MASEFESCVNYGLNLSKRIYYGKEPGSGRAVMPPGMTRQPESYLPEAVMVYAVVGEPQIVDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNSGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQSPSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQNLLLLVI
Disordered Region (DISPRO)
****FESCVNYGLNLSKRIYYGKEP****************SYLPEAVMVYAVVGEPQIVDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNSGVSEQIVGKCSSHPLKELSR***KLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQSPSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQNLLLLVI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASEFESCVNYGLNLSKRIYYGKEPGSGRAVMPPGMTRQPESYLPEAVMVYAVVGEPQIVDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNSGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQSPSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQNLLLLVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	591	2.2.26 [Sep-21-2011]
A6X935	942	Inter alpha-trypsin inhib	yes	no	0.379	0.237	0.286	2e-18
Q14624	930	Inter-alpha-trypsin inhib	yes	no	0.313	0.198	0.315	1e-16
P19823	946	Inter-alpha-trypsin inhib	no	no	0.406	0.253	0.247	1e-16
Q61703	946	Inter-alpha-trypsin inhib	no	no	0.409	0.255	0.241	2e-16
P97279	946	Inter-alpha-trypsin inhib	N/A	no	0.307	0.192	0.279	2e-16
A2VE29	940	Inter-alpha-trypsin inhib	yes	no	0.406	0.255	0.260	5e-16
Q8BJD1	952	Inter-alpha-trypsin inhib	no	no	0.406	0.252	0.275	5e-16
O02668	935	Inter-alpha-trypsin inhib	no	no	0.363	0.229	0.242	6e-16
Q9GLY5	903	Inter-alpha-trypsin inhib	no	no	0.751	0.491	0.223	4e-15
Q3T052	916	Inter-alpha-trypsin inhib	no	no	0.336	0.217	0.281	2e-14

>sp|A6X935|ITIH4_MOUSE Inter alpha-trypsin inhibitor, heavy chain 4 OS=Mus musculus GN=Itih4 PE=1 SV=2

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 27/251 (10%)

Query: 275 NSDFKFSYTVASTDLFGGVLLQSPSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDV 334
           N DF   Y V  +D  G + ++            F  +  P   ++     K+V+F++D 
Sbjct: 234 NGDFIVRYDVNRSDSGGSIQIE---------EGYFVHHFAP---ENLPTMSKNVIFVIDK 281

Query: 335 SGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWL 394
           SGSM G  ++QT+ AL   L  L+PQD FN+I F+GE + +  S+  A++  +  A  + 
Sbjct: 282 SGSMSGKKIQQTREALVKILKDLSPQDQFNLIEFSGEANQWKQSLVQATEENLNKAVNYA 341

Query: 395 SSLVAGGGTNILLPLKQAIKLLSDT-------SESIPLIFLITDG--TVGDERG--ICNE 443
           S + A GGTNI   +  A++LL  +       S+S+ LI L+TDG  TVG+     I N 
Sbjct: 342 SRIRAHGGTNINNAVLLAVELLDRSNQAELLPSKSVSLIILLTDGDPTVGETNPTIIQNN 401

Query: 444 IKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAA 503
           ++  +    S+    C  G G   N+ FL+ +A    G     Y+      +++ F+   
Sbjct: 402 VREAINGQYSL---FC-LGFGFDVNYPFLEKMALDNGGLARRIYEDSDSALQLQDFYHEV 457

Query: 504 SSVFLTNMTLE 514
           ++  L+++  E
Sbjct: 458 ANPLLSSVAFE 468

Type II acute-phase protein (APP) involved in inflammatory responses to trauma. May also play a role in liver development or regeneration.
Mus musculus (taxid: 10090)

>sp|Q14624|ITIH4_HUMAN Inter-alpha-trypsin inhibitor heavy chain H4 OS=Homo sapiens GN=ITIH4 PE=1 SV=4

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 105/200 (52%), Gaps = 15/200 (7%)

Query: 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQG 385
           K+VVF++D SGSM G  ++QT+ AL   L  L+P+D FN+I F+ E   +  S+  AS  
Sbjct: 273 KNVVFVIDKSGSMSGRKIQQTREALIKILDDLSPRDQFNLIVFSTEATQWRPSLVPASAE 332

Query: 386 TIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSE-------SIPLIFLITDG--TVGD 436
            +  A  + + + A GGTNI   +  A++LL  +++       S+ LI L+TDG  TVG+
Sbjct: 333 NVNKARSFAAGIQALGGTNINDAMLMAVQLLDSSNQEERLPEGSVSLIILLTDGDPTVGE 392

Query: 437 E--RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDY 494
              R I N ++  ++   S+    C  G G   ++ FL+ LA    G     ++      
Sbjct: 393 TNPRSIQNNVREAVSGRYSL---FC-LGFGFDVSYAFLEKLALDNGGLARRIHEDSDSAL 448

Query: 495 RIRRFFTAASSVFLTNMTLE 514
           +++ F+   ++  LT +T E
Sbjct: 449 QLQDFYQEVANPLLTAVTFE 468

May be involved in acute phase reactions.

Homo sapiens (taxid: 9606)

>sp|P19823|ITIH2_HUMAN Inter-alpha-trypsin inhibitor heavy chain H2 OS=Homo sapiens GN=ITIH2 PE=1 SV=2

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 132/259 (50%), Gaps = 19/259 (7%)

Query: 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQG 385
           K+++F++DVSGSM GV ++QT  A+   L  L  +D F++I FN     + + +  A++ 
Sbjct: 309 KNILFVIDVSGSMWGVKMKQTVEAMKTILDDLRAEDHFSVIDFNQNIRTWRNDLISATKT 368

Query: 386 TIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTS-------ESIPLIFLITDG--TVGD 436
            + +A +++  +   GGTNI   L +AI +L++ +        S+ LI L++DG  TVG+
Sbjct: 369 QVADAKRYIEKIQPSGGTNINEALLRAIFILNEANNLGLLDPNSVSLIILVSDGDPTVGE 428

Query: 437 ER--GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDY 494
            +   I   +K  + +  S    + + G+G   ++ FL+ L+    G     Y       
Sbjct: 429 LKLSKIQKNVKENIQDNIS----LFSLGMGFDVDYDFLKRLSNENHGIAQRIYGNQDTSS 484

Query: 495 RIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSVQ- 553
           ++++F+   S+  L N+      H +  ++  ++  ++     ++V+G++     D ++ 
Sbjct: 485 QLKKFYNQVSTPLLRNVQFNYP-HTSVTDVTQNNFHNYFGGSEIVVAGKFDPAKLDQIES 543

Query: 554 -VSGTMADTSNFIIELKAQ 571
            ++ T A+T   ++E  AQ
Sbjct: 544 VITATSANTQ-LVLETLAQ 561

May act as a carrier of hyaluronan in serum or as a binding protein between hyaluronan and other matrix protein, including those on cell surfaces in tissues to regulate the localization, synthesis and degradation of hyaluronan which are essential to cells undergoing biological processes.

Homo sapiens (taxid: 9606)

>sp|Q61703|ITIH2_MOUSE Inter-alpha-trypsin inhibitor heavy chain H2 OS=Mus musculus GN=Itih2 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 134/257 (52%), Gaps = 15/257 (5%)

Query: 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQG 385
           K+++F++DVSGSM G+ ++QT  A+   L  L   D F+++ FN     + + +  A++ 
Sbjct: 309 KNILFVIDVSGSMWGIKMKQTVEAMKTILDDLRTDDQFSVVDFNHNVRTWRNDLVSATKT 368

Query: 386 TIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTS-------ESIPLIFLITDG--TVGD 436
            I +A +++  +   GGTNI   L +AI +L++ S       +S+ LI L++DG  TVG+
Sbjct: 369 QIADAKRYIEKIQPSGGTNINEALLRAIFILNEASNMGLLNPDSVSLIILVSDGDPTVGE 428

Query: 437 ERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRI 496
            +   ++I+  +  +   +  + + G+G   ++ FL+ L+   RG     Y       ++
Sbjct: 429 LK--LSKIQKNVKQSIQDNISLFSLGIGFDVDYDFLKRLSNENRGIAQRIYGNQDTSSQL 486

Query: 497 RRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSVQ--V 554
           ++F+   S+  L N+     +  +  ++  ++  ++     ++V+G++  +    VQ  +
Sbjct: 487 KKFYNQVSTPLLRNVQFNYPQ-ASVTDVTQNNFHNYFGGSEIVVAGKFDPSKLTEVQSII 545

Query: 555 SGTMADTSNFIIELKAQ 571
           + T A+T   ++E  +Q
Sbjct: 546 TATSANTE-LVLETLSQ 561

May act as a carrier of hyaluronan in serum or as a binding protein between hyaluronan and other matrix protein, including those on cell surfaces in tissues to regulate the localization, synthesis and degradation of hyaluronan which are essential to cells undergoing biological processes.

Mus musculus (taxid: 10090)

>sp|P97279|ITIH2_MESAU Inter-alpha-trypsin inhibitor heavy chain H2 OS=Mesocricetus auratus GN=ITIH2 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 105/197 (53%), Gaps = 15/197 (7%)

Query: 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQG 385
           K+++F++DVSGSM G+ ++QT  A+   L  L  +D F+++ FN     + + +  A++ 
Sbjct: 309 KNILFVIDVSGSMWGIKMKQTVEAMKTILDDLRTEDQFSVVDFNHNVRTWRNDLVSATKT 368

Query: 386 TIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTS-------ESIPLIFLITDG--TVGD 436
            I +A +++  +   GGTNI   L +AI +L++ S       +S+ LI L++DG  TVG+
Sbjct: 369 QITDAKRYIEKIQPSGGTNINEALLRAIFILNEASNLGMLNPDSVSLIVLVSDGDPTVGE 428

Query: 437 ER--GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDY 494
            +   I   +K  + +  S    + + G+G   ++ FL+ L+   RG     Y       
Sbjct: 429 LKLSKIQKNVKQNIQDNIS----LFSLGIGFDVDYDFLKRLSNENRGIAQRIYGNRDTSS 484

Query: 495 RIRRFFTAASSVFLTNM 511
           ++++F+   S+  L N+
Sbjct: 485 QLKKFYNQVSTPLLRNV 501

May act as a carrier of hyaluronan in serum or as a binding protein between hyaluronan and other matrix protein, including those on cell surfaces in tissues to regulate the localization, synthesis and degradation of hyaluronan which are essential to cells undergoing biological processes.

Mesocricetus auratus (taxid: 10036)

>sp|A2VE29|ITIH5_BOVIN Inter-alpha-trypsin inhibitor heavy chain H5 OS=Bos taurus GN=ITIH5 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 128/269 (47%), Gaps = 29/269 (10%)

Query: 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQG 385
           K+VVF++D S SM G  L QTK+AL   L  L PQD FNI+ F+    ++   +   +  
Sbjct: 294 KNVVFVLDSSASMVGTKLRQTKDALFTILHDLRPQDHFNIVGFSNRIKVWKDHLVSVTPN 353

Query: 386 TIINATQWLSSLVAGGGTNILLPLKQAIKLLSD-------TSESIPLIFLITDG--TVGD 436
           +I +   ++  +   GGT+I   L++ I+LL+D          S+ L+  +TDG  TVG+
Sbjct: 354 SIRDGKVYIHHMSPSGGTDINGALQRGIQLLNDYVAHNDIEDRSVSLVVFLTDGKPTVGE 413

Query: 437 ERGICNEIKSYLTNTRSISP-RICTF--GVGLYCNHYFLQILAQIGRGYYDSAYDPGSVD 493
                      L NTR  +  R+C F  G+G   +   L+ L+    G     ++     
Sbjct: 414 THTF-----KILNNTREATRGRVCIFTVGIGADVDFKLLEKLSLENCGLTRRVHEDHDAR 468

Query: 494 YRIRRFFTAASSVFLTNMTLETSKHL---NSLELFPSHIPDFCLECPLIVSGRYSGNFGD 550
            ++  F+    +  L+++ ++    L    +  LFP++         ++++G+      D
Sbjct: 469 AQLIGFYDEIRTPLLSDIRVDYPPSLVERATRTLFPNYFNG----SEIVIAGKLVDRAMD 524

Query: 551 SVQVSGTMADTSNFIIELKAQNAKDIPLD 579
            + V  T +++  F++ LK    KD+P++
Sbjct: 525 RLHVEVTASNSKKFVV-LK----KDVPVE 548

May act as a tumor suppressor.

Bos taurus (taxid: 9913)

>sp|Q8BJD1|ITIH5_MOUSE Inter-alpha-trypsin inhibitor heavy chain H5 OS=Mus musculus GN=Itih5 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 132/269 (49%), Gaps = 29/269 (10%)

Query: 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQG 385
           K+VVF++D+S SM G  L+QT+ AL   L+ L PQD FNII F+    ++   +   +  
Sbjct: 294 KNVVFVLDISASMVGAKLQQTREALVTILNDLRPQDRFNIIGFSNRIKMWKDHLLPVTPD 353

Query: 386 TIINATQWLSSLVAGGGTNILLPLKQAIKLLSD-------TSESIPLIFLITDG--TVGD 436
            I N   ++  L   GGT+I   L+ AIKLL++          S+ LI  +TDG  T G+
Sbjct: 354 NIRNGKIYMYHLSPTGGTDINGALQAAIKLLNNYVAQNDIEDRSVSLIIFLTDGKPTFGE 413

Query: 437 ERGICNEIKSYLTNTRSISP-RICTF--GVGLYCNHYFLQILAQIGRGYYDSAYDPGSVD 493
                N +K  L+NT+  +  +IC F  G+G   +   L+ L+    G     ++     
Sbjct: 414 ----TNTLK-ILSNTKEATRGQICIFTVGIGDDVDFKLLEKLSLENCGLTRRVHEEDKAG 468

Query: 494 YRIRRFFTAASSVFLTNMTLETSKHL---NSLELFPSHIPDFCLECPLIVSGRYSGNFGD 550
            ++  F+    +  L+++ ++    +    +  LFP++         ++++G+      D
Sbjct: 469 AQLIGFYDEIRTPLLSDIRIDYPPDVVEHATKTLFPNYFNG----SEIVIAGKMVDKKFD 524

Query: 551 SVQVSGTMADTSNFIIELKAQNAKDIPLD 579
            + V  T +++  F+I LK    +DIP++
Sbjct: 525 QLHVEVTASNSKKFVI-LK----RDIPVE 548

May act as a tumor suppressor.

Mus musculus (taxid: 10090)

>sp|O02668|ITIH2_PIG Inter-alpha-trypsin inhibitor heavy chain H2 OS=Sus scrofa GN=ITIH2 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 119/231 (51%), Gaps = 16/231 (6%)

Query: 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQG 385
           K+++F++DVSGSM G+ ++QT  A+   L  L  +D F+++ FN     + + +  A++ 
Sbjct: 298 KNILFVIDVSGSMWGIKMKQTVEAMKTILDDLRAEDQFSLVDFNHNIRTWRNDLVSATKT 357

Query: 386 TIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTS-------ESIPLIFLITDG--TVGD 436
            + +A  ++  +   GGTNI   L +AI +L++ +        S+ LI L++DG  TVG+
Sbjct: 358 QVADAKTYIEKIQPSGGTNINEALLRAIFILNEANNLGLLDPNSVSLIILVSDGDPTVGE 417

Query: 437 ER--GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDY 494
            +   I   +K  + +  S    + + G+G   ++ FL+ L+   RG     Y       
Sbjct: 418 LQLSKIQKNVKQNIQDNVS----LFSLGIGFDVDYDFLKRLSNDNRGMAQRIYGNQDTAS 473

Query: 495 RIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYS 545
           ++++F+   S+  L N+     +  +  ++  +  P++     ++V+G+++
Sbjct: 474 QLKKFYNQVSTPLLRNVQFNYPQ-ASVTDVTQNSFPNYFGGSEIVVAGKFN 523

May act as a carrier of hyaluronan in serum or as a binding protein between hyaluronan and other matrix protein, including those on cell surfaces in tissues to regulate the localization, synthesis and degradation of hyaluronan which are essential to cells undergoing biological processes.

Sus scrofa (taxid: 9823)

>sp|Q9GLY5|ITIH3_RABIT Inter-alpha-trypsin inhibitor heavy chain H3 OS=Oryctolagus cuniculus GN=ITIH3 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 116/519 (22%), Positives = 218/519 (42%), Gaps = 75/519 (14%)

Query: 86  MHGVEM---EVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDG 142
           ++G+E+   +++C + + F A N         A    + +  V L +   +    + IDG
Sbjct: 40  VNGIEIYSTKINCKVTSRF-AHNVVTTRAVNRADTAKEVSFDVELPKTAFITNFTLTIDG 98

Query: 143 RSY----QSKLISLDDAEYKENVGKS----KGDGRYLKGQIYTLRIPQVDGGSTLSIKVN 194
            +Y    + K ++    E   + GK+    K  GR L  + +T+ +  V  GS ++ ++ 
Sbjct: 99  VTYPGHVKEKEVAKKQYEKAVSQGKTAGLVKASGRKL--EKFTVSV-NVAAGSKVTFELT 155

Query: 195 WSQKLTYEEGQFCLSVP---------FTFPAYVI-PLGRKIPKSEKIILNVNSGVSEQIV 244
           + + L   +G++ + +          F   A++  P G  +  +E       S ++  ++
Sbjct: 156 YEELLKRHKGKYEMYLKVQPKQLVKHFEIDAHIFEPQGISMLDAEA------SFITNDLL 209

Query: 245 GKCSSHPLKELSREVGKLSFSYEAEVKR--------WSNSDFKFSYTVASTDLFGGVLLQ 296
           G   +   K  S + G +SF    + +R          N DF  +Y V           +
Sbjct: 210 GSALT---KSFSGKKGHVSFKPSLDQQRSCPTCTDSLLNGDFTITYDVNR---------E 257

Query: 297 SPSLHDFDQRQI----FCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSA 352
           SP+       QI    F  +  P   Q   V  K+VVF++DVSGSM G  LEQTK+AL  
Sbjct: 258 SPA-----NIQIVNGYFVHFFAP---QGLPVVPKNVVFVIDVSGSMYGRKLEQTKDALLK 309

Query: 353 SLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQA 412
            L  +  +D  N I F+ +   +   +  A+   +  A  ++ S+   G TN+   L + 
Sbjct: 310 ILEDMREEDHLNFILFSSDVTTWKEHLVQATPENLQEARAFVKSIQDQGSTNLNDGLLRG 369

Query: 413 IKLLSDTSE-------SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGL 465
           I +L+   E       S  ++ ++TDG          +I+  + N       +   G G 
Sbjct: 370 ISMLNTAREEHRVPERSTSIVIMLTDGDANSGESRPEKIQENVRNAIGGKFPLYNLGFGN 429

Query: 466 YCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELF 525
             N+ FL+ LA    G+    Y+    + ++  F+   ++  LT++ +E  K+   L+L 
Sbjct: 430 NLNYNFLESLALENDGFARRIYEDSDANLQLHGFYEEVANPLLTSVEMEYPKNA-ILDLT 488

Query: 526 PSHIPDFCLECPLIVSGRYS----GNFGDSVQVSGTMAD 560
            +    F     ++V+GR +     +F   V+  G + D
Sbjct: 489 QNSYQHFYDGSEIVVAGRLADEDMNSFKADVKGHGALND 527

May act as a carrier of hyaluronan in serum or as a binding protein between hyaluronan and other matrix protein, including those on cell surfaces in tissues to regulate the localization, synthesis and degradation of hyaluronan which are essential to cells undergoing biological processes.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q3T052|ITIH4_BOVIN Inter-alpha-trypsin inhibitor heavy chain H4 OS=Bos taurus GN=ITIH4 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 18/217 (8%)

Query: 309 FCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAF 368
           F  Y  P    S     K+V+F++D SGSM G  ++QT+ AL   L  L+P D F++I+F
Sbjct: 260 FVHYFAP---DSLSTIPKNVIFVIDKSGSMMGRKIKQTREALIKILDDLSPHDQFDLISF 316

Query: 369 NGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSE------- 421
           + E   +   +  AS   +  A  + + + A GGTNI   +  A++LL   ++       
Sbjct: 317 SSEATTWKPLLVPASTENVNEAKSYATGIQAQGGTNINDAMLMAVQLLEKANQEELLPEG 376

Query: 422 SIPLIFLITDG--TVGDER--GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477
           SI LI L+TDG  TVG+     I   ++  +    S+    C  G G   ++ FL+ +A 
Sbjct: 377 SITLIILLTDGDPTVGETNPLNIQKNVRKAINGQHSL---FC-LGFGFDVSYAFLEKMAL 432

Query: 478 IGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLE 514
              G     Y+      +++ F+   ++  +T++  E
Sbjct: 433 ENGGLARRIYEDSDSALQLQDFYQEVANPLMTSVAFE 469

May be involved in acute phase reactions.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	591
255583954	752	inter-alpha-trypsin inhibitor heavy chai	0.967	0.760	0.642	0.0
449447914	754	PREDICTED: uncharacterized protein LOC10	0.983	0.770	0.610	0.0
224119512	742	predicted protein [Populus trichocarpa]	0.996	0.793	0.626	0.0
224073632	757	predicted protein [Populus trichocarpa]	0.996	0.778	0.614	0.0
225442075	747	PREDICTED: uncharacterized protein LOC10	0.994	0.787	0.610	0.0
225444686	756	PREDICTED: inter-alpha-trypsin inhibitor	0.981	0.767	0.589	0.0
356519838	756	PREDICTED: uncharacterized protein LOC10	0.986	0.771	0.579	0.0
224142781	751	predicted protein [Populus trichocarpa]	0.989	0.778	0.568	0.0
255550407	755	inter-alpha-trypsin inhibitor heavy chai	0.989	0.774	0.541	0.0
30686226	754	inter-alpha-trypsin inhibitor heavy chai	0.996	0.781	0.505	1e-179

>gi|255583954|ref|XP_002532724.1| inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis] gi|223527532|gb|EEF29655.1| inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/595 (64%), Positives = 464/595 (77%), Gaps = 23/595 (3%)

Query: 1   MASEFESCVNYGLNLSKRIYYGKEPGSGRAVMPPG------MTRQPESYLPEAVMVYAVV 54
           MA EF +CV+YGL LSKRIYYGKE       +PP        T   ESYLP AVMVYAVV
Sbjct: 1   MAEEFGTCVDYGLRLSKRIYYGKE-------LPPAPEPEMSKTVSWESYLPTAVMVYAVV 53

Query: 55  GEPQIVDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIM 114
            EP+ VDNPDVPSYQPYVHG+CQPPALIPL MHGV M+VDCCLD A V+FNG WRVHC+ 
Sbjct: 54  PEPEAVDNPDVPSYQPYVHGRCQPPALIPLQMHGVAMDVDCCLDYANVSFNGKWRVHCVK 113

Query: 115 AGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSK----GDGRY 170
             R+CDC IAVP+GE+GS+LG+EV+I G SY S+LI       KE + K K    GDGRY
Sbjct: 114 TSRKCDCRIAVPMGEQGSILGLEVDITGGSYHSQLIIA-----KETIDKGKTSKGGDGRY 168

Query: 171 LKGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEK 230
           LKG IYT +IPQV GG+T+S+KV WSQKLTY EGQFCL++PF+FPA+V P+ +KI K EK
Sbjct: 169 LKGSIYTFKIPQVVGGTTISVKVTWSQKLTYNEGQFCLNIPFSFPAFVNPVAKKITKREK 228

Query: 231 IILNVNSGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLF 290
           I+LNVNSGVS++I+ +C+SH LKEL REVGK++F YE EV  WS +D  FSYTV S DLF
Sbjct: 229 ILLNVNSGVSKEILFRCTSHALKELRREVGKMAFLYEEEVTTWSIADLNFSYTVVSEDLF 288

Query: 291 GGVLLQSPSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNAL 350
           G V LQSP L D D+RQ+FC YLFPG  QSRK FRKDV+F++D+SGSM+G  LE  KNAL
Sbjct: 289 GEVFLQSPLLRDIDERQMFCFYLFPGNKQSRKAFRKDVIFIIDISGSMKGGPLENAKNAL 348

Query: 351 SASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAGGGTNILLPL 409
            +SLSKLN +DSFNIIAFN ET+LFSS M+ A++  +  A+ WL+ +L AGGGTNI++PL
Sbjct: 349 MSSLSKLNSEDSFNIIAFNDETYLFSSLMEPATKEALSKASLWLNDNLTAGGGTNIMVPL 408

Query: 410 KQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNH 469
           KQA+KLL+ T++SIPLIFLITDG V DER ICN +K  LT+   ISPRIC+FG+G YCNH
Sbjct: 409 KQAMKLLAQTTDSIPLIFLITDGAVQDEREICNFVKGSLTSGGPISPRICSFGIGAYCNH 468

Query: 470 YFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHI 529
           YFLQ+LAQIGRGY+DSAYD  SVD+R++R FT ASSV L N+T++  +HL+SLEL P  I
Sbjct: 469 YFLQMLAQIGRGYFDSAYDADSVDFRMQRLFTTASSVILANVTVDALEHLDSLELLPFRI 528

Query: 530 PDFCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQ 584
           PD     PL+VSGRY+G F DSV++SG +AD SNF IELK Q AKD+ LD+V+++
Sbjct: 529 PDLSCGTPLVVSGRYNGKFPDSVKISGILADMSNFTIELKTQKAKDVQLDKVIAR 583

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447914|ref|XP_004141711.1| PREDICTED: uncharacterized protein LOC101206287 [Cucumis sativus] gi|449480498|ref|XP_004155911.1| PREDICTED: uncharacterized LOC101206287 [Cucumis sativus]

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/586 (61%), Positives = 473/586 (80%), Gaps = 5/586 (0%)

Query: 1   MASEFESCVNYGLNLSKRIYYGKEPGSGRAVMPPGMTRQPESYLPEAVMVYAVVGEPQIV 60
           MA+EF + V YGL+LSKRIYYGK  GS  A +   M+R  E YLP A MVYAV+ EP IV
Sbjct: 1   MATEFSNSVEYGLHLSKRIYYGK--GSTPAALARQMSRVSEDYLPRAPMVYAVIPEPTIV 58

Query: 61  DNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCD 120
           DNPD+PSYQPYVHG+C PPALIPLHM+GV ME++CC DTAF+  NG+WRVHC+MAGR C+
Sbjct: 59  DNPDIPSYQPYVHGRCVPPALIPLHMNGVSMEINCCFDTAFICVNGTWRVHCVMAGRSCE 118

Query: 121 CTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKG-QIYTLR 179
           C IAVP+GE+GSLLGVEV++ G S++++L+S++DAE  E + KS+ DG++LKG +IYTL+
Sbjct: 119 CLIAVPMGEQGSLLGVEVDVTGTSHRTELVSMEDAEAIEKLTKSE-DGKFLKGRRIYTLK 177

Query: 180 IPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNSGV 239
           IP+V+GG TLS+++NWSQ++ Y +  FCLSVPF+FPAY++P G+KI  S+KI+L++NSGV
Sbjct: 178 IPKVEGGCTLSVRINWSQRIPYLDDLFCLSVPFSFPAYLVPPGKKIKNSQKILLHINSGV 237

Query: 240 SEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQSPS 299
           S ++V K +SHP+K L REVG LSFS +AEV  WSN DF  SY+++  DLFGGVLLQSPS
Sbjct: 238 SSEVVCKHTSHPMKILRREVGNLSFSNDAEVSAWSNMDFDLSYSISPNDLFGGVLLQSPS 297

Query: 300 LHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP 359
           LHDFDQR++FCLY+FPG++ +R+VFRK+VVF++D+SGSM+   LE TK A+ ASLS+LNP
Sbjct: 298 LHDFDQREMFCLYIFPGQNHNRQVFRKEVVFIIDISGSMKDGPLESTKRAVLASLSQLNP 357

Query: 360 QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWL-SSLVAGGGTNILLPLKQAIKLLSD 418
           +D+FNII FNG+T LFS +M+ A++  I  AT W+ ++LVA GGTNILLP++QAIK+L++
Sbjct: 358 EDAFNIIGFNGDTKLFSLTMEQATKEAITRATDWINANLVANGGTNILLPVEQAIKMLAE 417

Query: 419 TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQI 478
           T  SIPLIFLITDG+V +ER ICN +K+ L +   ISPR+CTFG+G +CNHYFLQ+L++I
Sbjct: 418 TGNSIPLIFLITDGSVDNEREICNLVKASLKSGNKISPRLCTFGIGTFCNHYFLQMLSEI 477

Query: 479 GRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPL 538
           GRG YD+AYD   +D R +  FT ASS+FL N+T++  KHL+S ELFP+ IPD     PL
Sbjct: 478 GRGIYDAAYDVDLIDTRFQTLFTKASSLFLANITVDAFKHLDSFELFPTQIPDLACGSPL 537

Query: 539 IVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQ 584
           I+SGRY+G F +S +VSGT AD SN  I L+AQ AK++ LDRV+++
Sbjct: 538 IISGRYNGCFPESFKVSGTSADMSNSTIHLQAQRAKELLLDRVLAR 583

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119512|ref|XP_002331179.1| predicted protein [Populus trichocarpa] gi|222873300|gb|EEF10431.1| predicted protein [Populus trichocarpa]

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/597 (62%), Positives = 465/597 (77%), Gaps = 8/597 (1%)

Query: 1   MASEFESCVNYGLNLSKRIYYGKE--PGSGRAV---MPPGMTRQPESYLPEAVMVYAVVG 55
           MA EF +CV YGL+LSKRIYYGKE  P    A+   M    +   ESYLP AVM YAVV 
Sbjct: 1   MAREFATCVEYGLSLSKRIYYGKEMTPAVSAAMTRSMSSKSSELAESYLPTAVMAYAVVP 60

Query: 56  EPQIVDNPDVPSYQPYVHGKCQPPALIPLHMHG-VEMEVDCCLDTAFVAFNGSWRVHCIM 114
           EP++VDNPDVPSYQPYVHG+C+PPALIPL MHG V ME+DCC D A V F+G+WRVHCI 
Sbjct: 61  EPELVDNPDVPSYQPYVHGRCEPPALIPLQMHGAVAMEIDCCFDHANVCFSGAWRVHCIK 120

Query: 115 AGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQ 174
           A R+CD  IAVP+GE+GSLLGVEV++ GRSY S+LI  +DA   E V +   +GR +KG 
Sbjct: 121 ASRKCDVRIAVPMGEQGSLLGVEVDVTGRSYHSQLIQAEDANGNEKVSRG-WNGRLIKGS 179

Query: 175 IYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILN 234
           +Y+  IP+V GGST SIKV WSQKL Y EGQF L+VPF+FP++V P+G+KI K EKI+LN
Sbjct: 180 MYSFEIPEVGGGSTFSIKVTWSQKLLYHEGQFSLNVPFSFPSFVNPIGKKISKREKILLN 239

Query: 235 VNSGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVL 294
           VNSGV ++I+ +C+SH LKEL REVGK+ F Y+AEV  WS++DF FSY V S DLFGGVL
Sbjct: 240 VNSGVGKEILCRCASHALKELRREVGKMGFLYDAEVLTWSSADFSFSYNVYSKDLFGGVL 299

Query: 295 LQSPSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASL 354
           LQSP L DFD RQ+FC YLFPG +QS K FRK+V+FL+D+SGSM+G   E  KN L +SL
Sbjct: 300 LQSPFLRDFDDRQMFCCYLFPGDNQSMKAFRKEVIFLIDISGSMKGNPFESAKNGLLSSL 359

Query: 355 SKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAGGGTNILLPLKQAI 413
            KLNP+DSFNIIAFN ET+LFSS M+ A++  I+ ATQWL+ +L A GGTNIL PL+QA+
Sbjct: 360 QKLNPEDSFNIIAFNVETYLFSSLMEQATKEAILKATQWLNDNLTADGGTNILAPLEQAL 419

Query: 414 KLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473
           KLL++T++SIPLIFLITDG V DER ICN +K  LT+  SIS RICTFG+G YCNHYFL+
Sbjct: 420 KLLAETTDSIPLIFLITDGAVEDERDICNFVKGSLTSGGSISLRICTFGIGTYCNHYFLR 479

Query: 474 ILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFC 533
           +LAQIGRG++D+AYD  SVD+R++R F  ASS+ L N+T++  + L+SLEL P  IPD  
Sbjct: 480 MLAQIGRGHFDTAYDADSVDFRMQRLFATASSIILANITVDALESLDSLELLPFCIPDLS 539

Query: 534 LECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQNLLLLV 590
             CPLIVSGRYSGNF DSV++SG +AD   F I++KAQ AKD+P+DRV+++  + L+
Sbjct: 540 CGCPLIVSGRYSGNFPDSVKLSGILADMRKFTIDIKAQKAKDLPVDRVVARRQIDLL 596

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073632|ref|XP_002304123.1| predicted protein [Populus trichocarpa] gi|222841555|gb|EEE79102.1| predicted protein [Populus trichocarpa]

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/597 (61%), Positives = 461/597 (77%), Gaps = 8/597 (1%)

Query: 1   MASEFESCVNYGLNLSKRIYYGKE-PGSGRAVMPPGMTRQ----PESYLPEAVMVYAVVG 55
           MA EF +CV YGL+LSKRIYYGKE   +  A M   ++ +     ESY P AVM YAVV 
Sbjct: 1   MAREFATCVEYGLSLSKRIYYGKEMTPAATAAMTRSVSEKSSDVAESYFPTAVMAYAVVS 60

Query: 56  EPQIVDNPDVPSYQPYVHGKCQPPALIPLHMHGV-EMEVDCCLDTAFVAFNGSWRVHCIM 114
           EP++V+NPDVPSYQPYVHG+C+PPALIPLHMHGV  ME+DCC D A V F+G+WRVHCI 
Sbjct: 61  EPELVENPDVPSYQPYVHGRCEPPALIPLHMHGVVTMEIDCCFDHANVCFSGAWRVHCIK 120

Query: 115 AGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQ 174
              +CD  IAVP+GE+GSLLGVEV++ GRS  S+LI  +DA YKE V K  G+GR ++G 
Sbjct: 121 GNSKCDVRIAVPMGEQGSLLGVEVDVPGRSCHSQLIEAEDANYKEKVSKG-GNGRLMRGS 179

Query: 175 IYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILN 234
           +YT +IPQV+GG+T+SIKV WSQKL Y EGQF L+VPF+FPA+V P+G+KI K EKI+LN
Sbjct: 180 VYTFKIPQVEGGATVSIKVIWSQKLLYHEGQFSLNVPFSFPAFVNPVGKKISKREKILLN 239

Query: 235 VNSGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVL 294
           V+SGV ++I+ K +SH LKEL REVGK+ F Y+AEV  WS++DF FSY V S DLFGGVL
Sbjct: 240 VSSGVGKEILCKSTSHALKELRREVGKMGFLYDAEVLTWSSADFSFSYNVYSKDLFGGVL 299

Query: 295 LQSPSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASL 354
           LQSP L D D RQ+FC YLFPG +QS K FRK+V+F++D+SGSM+G   E  KN L +SL
Sbjct: 300 LQSPLLRDIDDRQMFCFYLFPGNNQSMKAFRKEVIFIIDISGSMKGGPFESAKNGLLSSL 359

Query: 355 SKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAGGGTNILLPLKQAI 413
            KLNP+DSFNIIAF  +T+LFSS M+ A++  II AT+WL+  L A GGTNIL PLKQAI
Sbjct: 360 QKLNPEDSFNIIAFKMDTYLFSSVMEQATEEAIIEATRWLNDKLTADGGTNILGPLKQAI 419

Query: 414 KLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473
           KLL++T+ SIP+IFLITDG V DER ICN +K YL +  SIS RI TFG+G YCNH+FL+
Sbjct: 420 KLLAETTNSIPVIFLITDGAVEDERDICNFVKGYLPSGGSISLRISTFGIGTYCNHHFLR 479

Query: 474 ILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFC 533
           +LAQIGRG++D+AYD  SVD+R+++ FT ASS+ L ++T++  +HL+SLEL P  IPD  
Sbjct: 480 MLAQIGRGHFDTAYDADSVDFRMQKLFTTASSIILADITVDALEHLDSLELLPFCIPDLS 539

Query: 534 LECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQNLLLLV 590
              PLIVSGRYSGNF D V++SGT+AD   F I+LKAQ  KD+P DRV+ +  + L+
Sbjct: 540 RGSPLIVSGRYSGNFPDPVKISGTLADMRKFTIDLKAQKTKDLPFDRVVGRRQIDLL 596

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442075|ref|XP_002271630.1| PREDICTED: uncharacterized protein LOC100244700 [Vitis vinifera] gi|297742983|emb|CBI35850.3| unnamed protein product [Vitis vinifera]

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/593 (61%), Positives = 461/593 (77%), Gaps = 5/593 (0%)

Query: 1   MASEFESCVNYGLNLSKRIYYGKEPGSGRAVMPPGMTRQP--ESYLPEAVMVYAVVGEPQ 58
           MA +F + V YGL LSKRIYYGK+  S  A  P  M +    ES+LP A MVYAV+ EP 
Sbjct: 1   MAEDFSTAVEYGLRLSKRIYYGKD-RSASAPKPQEMEKSESQESFLPTAPMVYAVIPEPS 59

Query: 59  IVDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQ 118
           IVDNPDVPSYQPYVHG+C PPALIPLHM G+ MEVDC LDTAF++ +G+WRVHC+M  R+
Sbjct: 60  IVDNPDVPSYQPYVHGRCDPPALIPLHMLGIAMEVDCYLDTAFISVSGTWRVHCVMGSRR 119

Query: 119 CDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIYTL 178
           CDC +A+P+GE+GS+LGVEV++ GRS  S+LI+ +D +      K++ DGR+L+ +IYTL
Sbjct: 120 CDCRVAIPMGEQGSVLGVEVDVTGRSCNSRLITEEDTKDNGKPAKTE-DGRFLRWRIYTL 178

Query: 179 RIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNSG 238
           ++P+V+GG+ LSIK +WSQKL Y++GQF L +PF+FP  V P G+KIPK EKI LNVNSG
Sbjct: 179 KVPKVEGGTNLSIKFSWSQKLLYQDGQFSLIIPFSFPTCVTPAGKKIPKKEKIRLNVNSG 238

Query: 239 VSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQSP 298
              +I+ K +SH LKEL  +VGKL F YEAEV+ WS +DF FSYTV+S ++FGG L+QSP
Sbjct: 239 TGTEILCKATSHLLKELRHQVGKLGFLYEAEVQTWSRADFNFSYTVSSNNIFGGALMQSP 298

Query: 299 SLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN 358
           S+HDFDQR++FC YLFPG + S KVFRK+VVF+VD+S SM+G  LE TK+A+ A+L  LN
Sbjct: 299 SVHDFDQREMFCFYLFPGSNISGKVFRKEVVFIVDISRSMRGRPLENTKDAVLAALLNLN 358

Query: 359 PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWL-SSLVAGGGTNILLPLKQAIKLLS 417
            QDSFNIIAFNG+T LFSS+M LA++  + NATQW+ ++  A GGTNIL PL QAI++L+
Sbjct: 359 TQDSFNIIAFNGDTCLFSSTMVLATKEEVGNATQWINTNFNAEGGTNILNPLSQAIEMLT 418

Query: 418 DTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477
            TS S+PLIFLITDG V DER ICN ++ +L N   I PRICTFG+G YCNHYFLQ+LAQ
Sbjct: 419 KTSGSMPLIFLITDGAVEDERHICNVVEGHLRNRSPICPRICTFGIGSYCNHYFLQMLAQ 478

Query: 478 IGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECP 537
           IGRGYYD+AYD  S+ + ++R FT ASSV L N+T+ET +HL+SLELFP HIPD     P
Sbjct: 479 IGRGYYDAAYDADSIAFHMQRLFTKASSVILANITIETLEHLDSLELFPFHIPDLSSGSP 538

Query: 538 LIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQNLLLLV 590
           LI+SGRY G F DS++ SG++AD SNF I+LK Q AK+IPLDRV ++  + L+
Sbjct: 539 LIISGRYHGEFPDSLKASGSLADMSNFTIDLKIQKAKEIPLDRVFARRQINLL 591

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444686|ref|XP_002277641.1| PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 [Vitis vinifera] gi|297738541|emb|CBI27786.3| unnamed protein product [Vitis vinifera]

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/589 (58%), Positives = 450/589 (76%), Gaps = 9/589 (1%)

Query: 1   MASEFESCVNYGLNLSKRIYYGKEPGSGRAVMPP---GMTRQPESYLPEAVMVYAVVGEP 57
           MA +F   V  GL L+KRIY+GK+    R+V PP    M +  +SYLP A MVYAVV +P
Sbjct: 1   MADDFTKSVEDGLKLAKRIYFGKD----RSVTPPKPVSMDKSSKSYLPTAPMVYAVVFDP 56

Query: 58  QIVDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGR 117
            IVDNPD+PSYQP+V+G+C P ALIPL M+G+ +EVDC LDTAFV   GSWRVHC+M  R
Sbjct: 57  AIVDNPDIPSYQPHVYGRCDPAALIPLQMNGIALEVDCYLDTAFVTLTGSWRVHCVMGSR 116

Query: 118 QCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIYT 177
            CDC +AVP+GE+GS+LGVEV++  +SY ++LI++++ +  E   ++ GDG +LK  I+T
Sbjct: 117 SCDCRLAVPMGEQGSILGVEVDVPRKSYCTQLITMEENKDMEKASRA-GDGGFLKPHIFT 175

Query: 178 LRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNS 237
           L IP+VDGGS LSIKV WSQKL Y +GQ  L VPF FP YV P G+K+ K EKI LNVN 
Sbjct: 176 LTIPEVDGGSNLSIKVRWSQKLLYHDGQLTLIVPFHFPEYVTPAGKKVSKKEKIQLNVNC 235

Query: 238 GVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQS 297
           G   +++ K +SHPLKE+ R+VGKLSFSYEAEV  WS++DF FS++V S+ + G VLLQS
Sbjct: 236 GTGMEVLCKTTSHPLKEIRRQVGKLSFSYEAEVLTWSSADFTFSFSVPSSHIHGSVLLQS 295

Query: 298 PSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL 357
           PS+HD DQR+IFCLYLFPG  Q+ KVFRK+VVF+VD+SGSM+G LLE TKNALSA+LSKL
Sbjct: 296 PSVHDVDQREIFCLYLFPGNQQTGKVFRKEVVFVVDISGSMRGKLLEDTKNALSAALSKL 355

Query: 358 NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAGGGTNILLPLKQAIKLL 416
           + +DSF+IIAFNGE  +FSSS++LA++  I NA QW+S + +AGG TNILLP+ +A++L 
Sbjct: 356 DSKDSFSIIAFNGEIFIFSSSVQLATKEAIENAIQWISMNFIAGGDTNILLPMNKAMELF 415

Query: 417 SDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA 476
           S +  SIP+IFLITDG+V DER IC+ + SYLTN  SI PRI TFG+GLYCNHYFL++LA
Sbjct: 416 SHSPGSIPIIFLITDGSVEDERHICDVMTSYLTNEESIHPRIYTFGIGLYCNHYFLKMLA 475

Query: 477 QIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLEC 536
            IGRG+YD+AYD  S++ R+ R FT ASS  L N+T++  + L+  E++PSH+PD   E 
Sbjct: 476 MIGRGHYDAAYDANSIELRVERLFTRASSTVLANITIDDLEDLDDFEVYPSHMPDLSSES 535

Query: 537 PLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQN 585
              VSGRY GNF D++Q  G  AD +NF+ +LK Q AK+IPLDRV+++ 
Sbjct: 536 VWTVSGRYKGNFPDTIQARGIFADLNNFVTDLKVQKAKEIPLDRVLAKQ 584

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519838|ref|XP_003528576.1| PREDICTED: uncharacterized protein LOC100807956 [Glycine max]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/587 (57%), Positives = 449/587 (76%), Gaps = 4/587 (0%)

Query: 1   MASEFESCVNYGLNLSKRIYYGKEPGSGRA-VMPPGMTRQPESYLPEAVMVYAVVGEPQI 59
           MA  F   V +GLNLSKRIYYGK      A  M   +++ PE YLP A M YAV+ +P+ 
Sbjct: 1   MADYFSGSVEFGLNLSKRIYYGKGSAPSPAPAMSRSLSKSPEGYLPTAPMCYAVISDPEK 60

Query: 60  VDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQC 119
           V+NPD+ SYQPYV G+C+PPALIPL +HGV MEV+C LDTAFV   G WRVHC+ A   C
Sbjct: 61  VENPDIRSYQPYVLGQCEPPALIPLELHGVAMEVECSLDTAFVTVTGKWRVHCVTASSTC 120

Query: 120 DCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIYTLR 179
           DC +A+P+GE GSLLG+EV+  GRSY ++LISL D + K  V K+K DG +LK  IYT++
Sbjct: 121 DCQVAIPIGEEGSLLGLEVDGSGRSYHTELISLKDEKDKNKVAKAK-DGYFLKSHIYTVK 179

Query: 180 IPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNSGV 239
           IPQ  GGS  SIK+ WSQK+ + +GQ  L VPF+FP+YV P GR I K EKI L VNSG 
Sbjct: 180 IPQFRGGSVFSIKIRWSQKILFHDGQLSLCVPFSFPSYVNPAGRNISKKEKIFLKVNSGA 239

Query: 240 SEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQSPS 299
           + +++ K +SHP KEL R+ GKL+ SYEAEV  WS++D  FSY+V+S D+FG VLLQSP 
Sbjct: 240 TTEVLCKTTSHPFKELLRQAGKLNLSYEAEVLTWSSTDLSFSYSVSSNDIFGAVLLQSPF 299

Query: 300 LHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP 359
           L DFD+R+IFCLYL+PG S  RKVF+KDVVF+VD+S SM+G  L+ TKN+L  SLS+LN 
Sbjct: 300 LRDFDEREIFCLYLYPGNSPDRKVFKKDVVFVVDISASMKGTPLDNTKNSLLTSLSQLNA 359

Query: 360 QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWL-SSLVAGGGTNILLPLKQAIKLLSD 418
           QD+FNIIAFNG  +LFSSSM+ A++  I+NAT W+ ++ +A G TNI+LPL QA+KLL  
Sbjct: 360 QDTFNIIAFNGAVYLFSSSMERATEEAILNATTWVDTNFIANGDTNIMLPLTQAMKLLEK 419

Query: 419 TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSI-SPRICTFGVGLYCNHYFLQILAQ 477
           +++S+PLIFL+TDG V DER ICN +KSY+++ +S  +PRI TFG+GLYCNHYFLQ+LAQ
Sbjct: 420 STDSVPLIFLVTDGAVEDERDICNFVKSYVSSGQSFRTPRIYTFGIGLYCNHYFLQMLAQ 479

Query: 478 IGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECP 537
           IGRG+YDSA+D  S+D+R++R F++ASSV + ++T+++ + L+SLELFP+HI D   E P
Sbjct: 480 IGRGHYDSAHDLDSIDFRMQRLFSSASSVMVADITIKSLEGLDSLELFPTHIQDISFESP 539

Query: 538 LIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQ 584
           LI+SGRYSG F + V+V+GT+AD +NF+++LK +  KD+ L  V+S+
Sbjct: 540 LILSGRYSGTFPELVKVTGTLADMTNFVVDLKVKREKDMQLSNVLSK 586

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142781|ref|XP_002324729.1| predicted protein [Populus trichocarpa] gi|222866163|gb|EEF03294.1| predicted protein [Populus trichocarpa]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/595 (56%), Positives = 436/595 (73%), Gaps = 10/595 (1%)

Query: 1   MASEFESCVNYGLNLSKRIYYGKEPGSGRAVMPPG----MTRQPESYLPEAVMVYAVVGE 56
           MA EF   V  GL LSKRIY GK+    RAV PP     M + P +YLP A MVYAV+  
Sbjct: 1   MAEEFGRSVQDGLKLSKRIYLGKD----RAVTPPKPPSHMDKSPVAYLPTAPMVYAVISN 56

Query: 57  PQIVDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAG 116
           P IVDNPD+PSYQP+VHG+C PPALIPL M  +E+E D  LDTAFV  +GSWRVHC+M  
Sbjct: 57  PAIVDNPDIPSYQPHVHGRCDPPALIPLQMTRIELEADSYLDTAFVKISGSWRVHCVMGS 116

Query: 117 RQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIY 176
             CDC +AVP+GE+GS+LGVE+E   + Y ++L++++D +  E   + + +G +LK   +
Sbjct: 117 ESCDCRLAVPMGEQGSILGVEIEASRKLYYTELVAIEDRKDLEKEVRIE-NGGFLKPHTF 175

Query: 177 TLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVN 236
           T+ IP+VDGGSTLSIKV W QKL Y  G+F L VPF+FP YV P  +K+P+ EKI LNV 
Sbjct: 176 TITIPKVDGGSTLSIKVRWMQKLLYHNGEFSLIVPFSFPEYVTPHVKKLPRKEKIQLNVT 235

Query: 237 SGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQ 296
           +G   +IV K SSHPLK L REVGKL FSYE+EV  W+N DF FSY V+ + +FGGVLLQ
Sbjct: 236 TGTGTEIVCKTSSHPLKGLRREVGKLGFSYESEVLTWTNIDFTFSYAVSFSHIFGGVLLQ 295

Query: 297 SPSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK 356
           SPSLHD DQR +FC YLFPG   SRKVFRK++VF+VD+SGSM+G  LE TK ALSA+L+ 
Sbjct: 296 SPSLHDVDQRDMFCAYLFPGGHHSRKVFRKEIVFVVDISGSMEGAPLEGTKIALSAALTN 355

Query: 357 LNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAGGGTNILLPLKQAIKL 415
           L+ +DSFNIIAFNGET+LFSSSM+LAS+ T+  A +W+S +L+AGG TNIL+PLKQA ++
Sbjct: 356 LDSKDSFNIIAFNGETYLFSSSMELASEDTVERAVEWMSMNLIAGGDTNILVPLKQATEM 415

Query: 416 LSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQIL 475
           LS +  SIP IFL+TDG V DER IC+ +KS++T   SI PRICTFG+G YCNH+FL++L
Sbjct: 416 LSKSGGSIPFIFLVTDGAVEDERHICDIMKSHITGGGSIHPRICTFGIGSYCNHHFLRML 475

Query: 476 AQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLE 535
           A I RG YD+AYD  SV+ R+++  +  SS  + N+T++    L+ +E++PS IPD   +
Sbjct: 476 AMISRGQYDAAYDIDSVESRMQKLLSRISSTIIANITIKAFDDLDEVEVYPSRIPDLSSD 535

Query: 536 CPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQNLLLLV 590
            PLIVSGR+ GNF D+V  +G   D SNF ++LK Q AKDIPL  V ++  + L+
Sbjct: 536 NPLIVSGRFQGNFPDTVVATGFFGDLSNFSLDLKVQKAKDIPLHSVSAKQQIDLL 590

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550407|ref|XP_002516254.1| inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis] gi|223544740|gb|EEF46256.1| inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/595 (54%), Positives = 442/595 (74%), Gaps = 10/595 (1%)

Query: 1   MASEFESCVNYGLNLSKRIYYGKEPGSGRAVMPP----GMTRQPESYLPEAVMVYAVVGE 56
           MA EF + V  GL LSKR+YYGK+    RAV PP     M +  E+YLP A M+YAV+ +
Sbjct: 1   MAEEFGNSVEDGLKLSKRLYYGKD----RAVAPPRPVVHMEKSAEAYLPTAPMIYAVISD 56

Query: 57  PQIVDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAG 116
           P IVDNPD+PSYQP+VHG+C PPALIPL M+ +E+E D  LD+A V  NGSWRVHC+M  
Sbjct: 57  PSIVDNPDMPSYQPHVHGRCDPPALIPLQMNRIELEADSFLDSAIVRVNGSWRVHCVMGS 116

Query: 117 RQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIY 176
           + CDC IA+P+GE+GS+LGVEVE+  +SY ++LI++DD +  E   + + +G +L  QI+
Sbjct: 117 KSCDCRIAIPMGEQGSILGVEVEVARKSYYTELIAMDDKKDTEKECRPE-NGGFLTPQIF 175

Query: 177 TLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVN 236
           TL IP+VDGGS++SIKV+W QKL Y +G+  L+VPF+FP +V P  +K+PK EKI+LNVN
Sbjct: 176 TLTIPKVDGGSSISIKVSWIQKLLYHDGELSLTVPFSFPEFVTPAVKKLPKKEKILLNVN 235

Query: 237 SGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQ 296
           SG   ++V K +SHPLK+L RE GKL FSYE+EV  W++ DF  SY+V+S+ +FGGV+LQ
Sbjct: 236 SGTGTEVVCKTTSHPLKQLKREAGKLGFSYESEVLTWTDIDFAVSYSVSSSHIFGGVMLQ 295

Query: 297 SPSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK 356
           SPS HD DQR +F LYLFPG   + KVFRK++VF+VD+SGSM+G  LE  KNA+S +L+K
Sbjct: 296 SPSAHDVDQRDMFYLYLFPGDQPNMKVFRKEIVFIVDISGSMEGKPLEGMKNAMSGALAK 355

Query: 357 LNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAGGGTNILLPLKQAIKL 415
           LNP+DSFNIIAFNGET+LFSS M+LA++ T+  A +W++ + +AGGGTNI +PL QA+++
Sbjct: 356 LNPKDSFNIIAFNGETYLFSSLMELATEKTVERAVEWMNLNFIAGGGTNISVPLNQAMEM 415

Query: 416 LSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQIL 475
           +S+T  S+P+IFL+TDG V DER IC+ +K Y+    +I PRI TFG+G YCNHYFL++L
Sbjct: 416 VSNTQGSLPVIFLVTDGAVEDERHICDSMKKYVRGKGAICPRIYTFGIGTYCNHYFLRML 475

Query: 476 AQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLE 535
           A + RG YD+AYD  SV  R+  FF+   S  L N+ ++T   L+ +E++PS+IPD   E
Sbjct: 476 ATVCRGQYDAAYDVDSVQARMEIFFSRGLSAVLANVMIDTLDDLDDVEVYPSNIPDLSSE 535

Query: 536 CPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQNLLLLV 590
             LI+SGRY GNF   V+  G + + SNF+++LK Q  KD+P D++ ++  + L+
Sbjct: 536 SLLIISGRYHGNFPGIVKAEGVLGNLSNFVVDLKIQKTKDVPFDKIFAKQQIDLL 590

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686226|ref|NP_173345.2| inter-alpha-trypsin inhibitor heavy chain-like protein [Arabidopsis thaliana] gi|22531102|gb|AAM97055.1| unknown protein [Arabidopsis thaliana] gi|23197960|gb|AAN15507.1| unknown protein [Arabidopsis thaliana] gi|332191682|gb|AEE29803.1| inter-alpha-trypsin inhibitor heavy chain-like protein [Arabidopsis thaliana]

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 300/593 (50%), Positives = 417/593 (70%), Gaps = 4/593 (0%)

Query: 1   MASEFESCVNYGLNLSKRIYYGKEPGSGRAVMPPGMTRQ--PESYLPEAVMVYAVVGEPQ 58
           MA +F   V+ GL L+KRIY+GK+        P  M R    + YLP A MVYAV+ +P 
Sbjct: 1   MAEDFARAVDDGLKLAKRIYFGKDRAVAAPRPPAPMDRSSTTQPYLPTAPMVYAVIPDPG 60

Query: 59  IVDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQ 118
           IVDNPD+PSYQP+VHG+C PPALIPL M+ +E++VDC LDTA V   GSWRVHC+M  ++
Sbjct: 61  IVDNPDLPSYQPHVHGRCDPPALIPLQMNSIELDVDCYLDTALVTVTGSWRVHCVMGSKR 120

Query: 119 CDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIYTL 178
           CDC IA+P+GE+GS+LGVEVEI  +SY ++LI+ +D    E     +  G +LK  I+TL
Sbjct: 121 CDCRIAIPMGEQGSILGVEVEIPRKSYTTQLITAEDGNEFEKTALPETGG-FLKPNIFTL 179

Query: 179 RIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNSG 238
            IPQVDGG+ LSIK+ WSQKLTY +GQF L +PF FP YV P  +KI K EKI L+VN+G
Sbjct: 180 TIPQVDGGTNLSIKMTWSQKLTYNQGQFFLDIPFNFPEYVTPAVKKISKREKIYLSVNAG 239

Query: 239 VSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQSP 298
              +++ K  SH LKE  R  GKL F+YEA+V +WSN+DF FSYT +S+++ GG+ LQS 
Sbjct: 240 TGTEVLCKGCSHQLKEKLRSAGKLRFAYEADVLKWSNTDFSFSYTASSSNIVGGLFLQSA 299

Query: 299 SLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN 358
            +HD DQR IF  YLFPGK Q  K F+++VVF+VD+S SM G  LE  KNA+S +LSKL+
Sbjct: 300 PVHDVDQRDIFSFYLFPGKQQKTKAFKREVVFVVDISKSMTGKPLEDVKNAISTALSKLD 359

Query: 359 PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAGGGTNILLPLKQAIKLLS 417
           P DSFNII F+ +T LFS+SM+  +   +    +W++ + V   GTN+L PL++A+++LS
Sbjct: 360 PGDSFNIITFSNDTALFSTSMESVTSDAVERGIEWMNKNFVVADGTNMLPPLEKAVEMLS 419

Query: 418 DTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477
           +T  SIP+IF +TDG+V DER IC+ +K +L +  S+ PRI TFG+G++CNHYFLQ+LA 
Sbjct: 420 NTRGSIPMIFFVTDGSVEDERHICDVMKKHLASAGSVFPRIHTFGLGVFCNHYFLQMLAN 479

Query: 478 IGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECP 537
           I  G ++S Y+   ++ R+ + FT A S  L N+ +E  + L+ +E++PS+IPD     P
Sbjct: 480 ISCGQHESVYNTDHIEERMDKLFTKALSTILVNIAIEPLQSLDEVEVYPSNIPDLTSASP 539

Query: 538 LIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQNLLLLV 590
           L++ GRY G F ++V   G + D S+F  +L  Q+AKD+PLD+V ++N++ L+
Sbjct: 540 LMIYGRYRGKFPENVIAKGLLGDLSSFSTDLTVQSAKDMPLDKVFAKNVIDLL 592

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	591
TAIR|locus:2011236	754	AT1G19110 "AT1G19110" [Arabido	0.996	0.781	0.505	4.3e-164
UNIPROTKB|Q47YR5	786	CPS_3379 "von Willebrand facto	0.548	0.412	0.297	6.4e-30
TIGR_CMR|CPS_3379	786	CPS_3379 "von Willebrand facto	0.548	0.412	0.297	6.4e-30
UNIPROTKB|Q8EF10	760	SO_2195 "Inter-alpha-trypsin i	0.461	0.359	0.285	1.9e-19
TIGR_CMR|SO_2195	760	SO_2195 "inter-alpha-trypsin i	0.461	0.359	0.285	1.9e-19
MGI|MGI:109536	942	Itih4 "inter alpha-trypsin inh	0.639	0.401	0.245	2.8e-16
UNIPROTKB|F1PG39	948	ITIH2 "Uncharacterized protein	0.406	0.253	0.254	1.2e-15
UNIPROTKB|E1BTM0	921	ITIH5 "Uncharacterized protein	0.414	0.266	0.275	1.9e-15
MGI|MGI:96619	946	Itih2 "inter-alpha trypsin inh	0.406	0.253	0.254	2.7e-15
RGD|70881	933	Itih4 "inter-alpha-trypsin inh	0.311	0.197	0.328	3.5e-15

TAIR|locus:2011236 AT1G19110 "AT1G19110" [Arabidopsis thaliana (taxid:3702)]

 Score = 1597 (567.2 bits), Expect = 4.3e-164, P = 4.3e-164
 Identities = 300/593 (50%), Positives = 417/593 (70%)

Query:     1 MASEFESCVNYGLNLSKRIYYGKEPGSGRAVMPPGMTRQP--ESYLPEAVMVYAVVGEPQ 58
             MA +F   V+ GL L+KRIY+GK+        P  M R    + YLP A MVYAV+ +P 
Sbjct:     1 MAEDFARAVDDGLKLAKRIYFGKDRAVAAPRPPAPMDRSSTTQPYLPTAPMVYAVIPDPG 60

Query:    59 IVDNPDVPSYQPYVHGKCQPPALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQ 118
             IVDNPD+PSYQP+VHG+C PPALIPL M+ +E++VDC LDTA V   GSWRVHC+M  ++
Sbjct:    61 IVDNPDLPSYQPHVHGRCDPPALIPLQMNSIELDVDCYLDTALVTVTGSWRVHCVMGSKR 120

Query:   119 CDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIYTL 178
             CDC IA+P+GE+GS+LGVEVEI  +SY ++LI+ +D    E     +  G +LK  I+TL
Sbjct:   121 CDCRIAIPMGEQGSILGVEVEIPRKSYTTQLITAEDGNEFEKTALPETGG-FLKPNIFTL 179

Query:   179 RIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNSG 238
              IPQVDGG+ LSIK+ WSQKLTY +GQF L +PF FP YV P  +KI K EKI L+VN+G
Sbjct:   180 TIPQVDGGTNLSIKMTWSQKLTYNQGQFFLDIPFNFPEYVTPAVKKISKREKIYLSVNAG 239

Query:   239 VSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQSP 298
                +++ K  SH LKE  R  GKL F+YEA+V +WSN+DF FSYT +S+++ GG+ LQS 
Sbjct:   240 TGTEVLCKGCSHQLKEKLRSAGKLRFAYEADVLKWSNTDFSFSYTASSSNIVGGLFLQSA 299

Query:   299 SLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN 358
              +HD DQR IF  YLFPGK Q  K F+++VVF+VD+S SM G  LE  KNA+S +LSKL+
Sbjct:   300 PVHDVDQRDIFSFYLFPGKQQKTKAFKREVVFVVDISKSMTGKPLEDVKNAISTALSKLD 359

Query:   359 PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAGGGTNILLPLKQAIKLLS 417
             P DSFNII F+ +T LFS+SM+  +   +    +W++ + V   GTN+L PL++A+++LS
Sbjct:   360 PGDSFNIITFSNDTALFSTSMESVTSDAVERGIEWMNKNFVVADGTNMLPPLEKAVEMLS 419

Query:   418 DTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477
             +T  SIP+IF +TDG+V DER IC+ +K +L +  S+ PRI TFG+G++CNHYFLQ+LA 
Sbjct:   420 NTRGSIPMIFFVTDGSVEDERHICDVMKKHLASAGSVFPRIHTFGLGVFCNHYFLQMLAN 479

Query:   478 IGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECP 537
             I  G ++S Y+   ++ R+ + FT A S  L N+ +E  + L+ +E++PS+IPD     P
Sbjct:   480 ISCGQHESVYNTDHIEERMDKLFTKALSTILVNIAIEPLQSLDEVEVYPSNIPDLTSASP 539

Query:   538 LIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRVMSQNLLLLV 590
             L++ GRY G F ++V   G + D S+F  +L  Q+AKD+PLD+V ++N++ L+
Sbjct:   540 LMIYGRYRGKFPENVIAKGLLGDLSSFSTDLTVQSAKDMPLDKVFAKNVIDLL 592

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009690 "cytokinin metabolic process" evidence=RCA

UNIPROTKB|Q47YR5 CPS_3379 "von Willebrand factor type A domain protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 346 (126.9 bits), Expect = 6.4e-30, Sum P(2) = 6.4e-30
 Identities = 105/353 (29%), Positives = 168/353 (47%)

Query:   223 RKIPKSEKII-LNVNSGVS-EQIVGKCSSHPLKELSREVGKLSFSYEAEVKRW---SNSD 277
             R + +S+  I + +NSG+    IV        ++LS ++     +Y   + +    SN  
Sbjct:   290 RSVARSQSSINIVLNSGIPITSIVSDSHKIQSRDLSSKLNSEQNAYFITLDKTQVISNKT 349

Query:   278 FKFSYTVASTDLFGGVLLQSPSLHDFDQR----QIFCLYLFPGKSQSRKVFRKDVVFLVD 333
             F  ++ + +++         P +  F Q         L  FP +    +V  +D++F++D
Sbjct:   350 FDLTWQLIASN--------QPQVSSFTQEISGEHYTLLTFFPPEKAVAQVIARDIIFIID 401

Query:   334 VSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQW 393
              SGSMQ   +EQ K++L  +L +LN +DSFNIIAF+ +T L      +AS   I  A Q+
Sbjct:   402 TSGSMQAGSMEQAKSSLQLALLQLNNKDSFNIIAFDNDTELLFPVTHMASAHNISKAQQF 461

Query:   394 LSSLVAGGGTNILLPLKQAIKLLSD---TSESIPLIFLITDGTVGDERGICNEIKSYLTN 450
             +  L A GGT +  PL  A+ +  D   +S++I  I  ITDG V +E  +       L N
Sbjct:   462 IDGLSANGGTEMYRPLSNALMMKKDKTQSSKAIRQIVFITDGAVANEFELMQ-----LLN 516

Query:   451 TRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTN 510
             T     R+ T G+G   N YF++  AQ GRG Y    +   V  ++  F T  S   LTN
Sbjct:   517 TAQGDFRLYTVGIGAAPNGYFMKKAAQFGRGSYVFIQNKSEVQRKMSHFMTKISQPALTN 576

Query:   511 MTLETSKHLNS-LELFPSHIPDFCLECPLIVSGRYSGNFG-DSVQVSGTMADT 561
             + L     ++  +E++P  IPD     PL ++      F   SVQ++     T
Sbjct:   577 IALTLDNQIHQHVEVYPKKIPDLYFGEPLQIA--LKSQFPISSVQLTAETVST 627

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3379 CPS_3379 "von Willebrand factor type A domain protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 346 (126.9 bits), Expect = 6.4e-30, Sum P(2) = 6.4e-30
 Identities = 105/353 (29%), Positives = 168/353 (47%)

Query:   223 RKIPKSEKII-LNVNSGVS-EQIVGKCSSHPLKELSREVGKLSFSYEAEVKRW---SNSD 277
             R + +S+  I + +NSG+    IV        ++LS ++     +Y   + +    SN  
Sbjct:   290 RSVARSQSSINIVLNSGIPITSIVSDSHKIQSRDLSSKLNSEQNAYFITLDKTQVISNKT 349

Query:   278 FKFSYTVASTDLFGGVLLQSPSLHDFDQR----QIFCLYLFPGKSQSRKVFRKDVVFLVD 333
             F  ++ + +++         P +  F Q         L  FP +    +V  +D++F++D
Sbjct:   350 FDLTWQLIASN--------QPQVSSFTQEISGEHYTLLTFFPPEKAVAQVIARDIIFIID 401

Query:   334 VSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQW 393
              SGSMQ   +EQ K++L  +L +LN +DSFNIIAF+ +T L      +AS   I  A Q+
Sbjct:   402 TSGSMQAGSMEQAKSSLQLALLQLNNKDSFNIIAFDNDTELLFPVTHMASAHNISKAQQF 461

Query:   394 LSSLVAGGGTNILLPLKQAIKLLSD---TSESIPLIFLITDGTVGDERGICNEIKSYLTN 450
             +  L A GGT +  PL  A+ +  D   +S++I  I  ITDG V +E  +       L N
Sbjct:   462 IDGLSANGGTEMYRPLSNALMMKKDKTQSSKAIRQIVFITDGAVANEFELMQ-----LLN 516

Query:   451 TRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTN 510
             T     R+ T G+G   N YF++  AQ GRG Y    +   V  ++  F T  S   LTN
Sbjct:   517 TAQGDFRLYTVGIGAAPNGYFMKKAAQFGRGSYVFIQNKSEVQRKMSHFMTKISQPALTN 576

Query:   511 MTLETSKHLNS-LELFPSHIPDFCLECPLIVSGRYSGNFG-DSVQVSGTMADT 561
             + L     ++  +E++P  IPD     PL ++      F   SVQ++     T
Sbjct:   577 IALTLDNQIHQHVEVYPKKIPDLYFGEPLQIA--LKSQFPISSVQLTAETVST 627

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EF10 SO_2195 "Inter-alpha-trypsin inhibitor family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 252 (93.8 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 83/291 (28%), Positives = 143/291 (49%)

Query:   275 NSDFKFSYTVASTDLFGGVL--LQSPSLHDFDQRQIFCLYLFPGKSQSRKV-FRKDVVFL 331
             N + K   T A++D  G ++    S S  + D   +  + L P    S ++   ++++ +
Sbjct:   326 NQNGKTHQTQAASD-DGSMVNTAASTSASNIDNYSLV-MVLPPKVEASGQLNLPRELILV 383

Query:   332 VDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINAT 391
             +D SGSM G  + Q KNAL  +L  L  QDSFNII FN +  L S     A+   +  A 
Sbjct:   384 IDTSGSMAGDSIIQAKNALRYALRGLKAQDSFNIIEFNSDVSLLSPVPLPATAENLAIAR 443

Query:   392 QWLSSLVAGGGTNILLPLKQAI------KLLSDTSESIPLIFLITDGTVGDERGICNEIK 445
             Q+++ L A GGT + L L+ A+      +  S+ +    +IF+ TDG+VG+E  +   I+
Sbjct:   444 QFVNRLQADGGTEMSLALEAALPKQRPSRAASENNVLQQVIFM-TDGSVGNEEALFELIR 502

Query:   446 SYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASS 505
               + + R     + T G+G   N +F+Q  A++GRG +    D   V+ +I +  T    
Sbjct:   503 HQIGDNR-----LFTVGIGSAPNSHFMQRAAELGRGTFTYIGDVDEVEQKINQLLTKIQY 557

Query:   506 VFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSG 556
               LT++ +         + +PS IPD     P+++S ++       + +SG
Sbjct:   558 PVLTDLQVRFDDGTVP-DYWPSPIPDLYRGEPVLISIKHQPREPKELVISG 607

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_2195 SO_2195 "inter-alpha-trypsin inhibitor domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 252 (93.8 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 83/291 (28%), Positives = 143/291 (49%)

Query:   275 NSDFKFSYTVASTDLFGGVL--LQSPSLHDFDQRQIFCLYLFPGKSQSRKV-FRKDVVFL 331
             N + K   T A++D  G ++    S S  + D   +  + L P    S ++   ++++ +
Sbjct:   326 NQNGKTHQTQAASD-DGSMVNTAASTSASNIDNYSLV-MVLPPKVEASGQLNLPRELILV 383

Query:   332 VDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINAT 391
             +D SGSM G  + Q KNAL  +L  L  QDSFNII FN +  L S     A+   +  A 
Sbjct:   384 IDTSGSMAGDSIIQAKNALRYALRGLKAQDSFNIIEFNSDVSLLSPVPLPATAENLAIAR 443

Query:   392 QWLSSLVAGGGTNILLPLKQAI------KLLSDTSESIPLIFLITDGTVGDERGICNEIK 445
             Q+++ L A GGT + L L+ A+      +  S+ +    +IF+ TDG+VG+E  +   I+
Sbjct:   444 QFVNRLQADGGTEMSLALEAALPKQRPSRAASENNVLQQVIFM-TDGSVGNEEALFELIR 502

Query:   446 SYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASS 505
               + + R     + T G+G   N +F+Q  A++GRG +    D   V+ +I +  T    
Sbjct:   503 HQIGDNR-----LFTVGIGSAPNSHFMQRAAELGRGTFTYIGDVDEVEQKINQLLTKIQY 557

Query:   506 VFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSG 556
               LT++ +         + +PS IPD     P+++S ++       + +SG
Sbjct:   558 PVLTDLQVRFDDGTVP-DYWPSPIPDLYRGEPVLISIKHQPREPKELVISG 607

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:109536 Itih4 "inter alpha-trypsin inhibitor, heavy chain 4" [Mus musculus (taxid:10090)]

 Score = 237 (88.5 bits), Expect = 2.8e-16, P = 2.8e-16
 Identities = 103/420 (24%), Positives = 187/420 (44%)

Query:   120 DCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAE--YKENVGKSKGDG--RYLKGQI 175
             + T  V L  +  +    + IDG +Y   +    +A+  Y   VG+ +  G  +    Q 
Sbjct:    66 EATFQVELPRKAFITNFSMIIDGVTYPGVVKEKAEAQKQYSAAVGRGESAGIVKTTGRQT 125

Query:   176 YTLRIP-QVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKI----PKSEK 230
                 +   V  GS ++ ++ + + L    G + L +       V  L   I    P+   
Sbjct:   126 EKFEVSVNVAPGSKITFELIYQELLQRRLGMYELLLKVRPQQLVKHLQMDIYIFEPQGIS 185

Query:   231 IILNVNSGVSEQIVGKC--SSHPLKELSREVGKLSFSYEAEVKRWS--NSDFKFSYTVAS 286
             I+   ++ ++ ++      S +  K   R    LS   +++ ++ +  N DF   Y V  
Sbjct:   186 ILETESTFMTPELANALTTSQNKTKAHIRFKPTLSQQQKSQSEQDTVLNGDFIVRYDVNR 245

Query:   287 TDLFGGVLLQSPS-LHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQ 345
             +D  G + ++    +H F    +      P  S       K+V+F++D SGSM G  ++Q
Sbjct:   246 SDSGGSIQIEEGYFVHHFAPENL------PTMS-------KNVIFVIDKSGSMSGKKIQQ 292

Query:   346 TKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNI 405
             T+ AL   L  L+PQD FN+I F+GE + +  S+  A++  +  A  + S + A GGTNI
Sbjct:   293 TREALVKILKDLSPQDQFNLIEFSGEANQWKQSLVQATEENLNKAVNYASRIRAHGGTNI 352

Query:   406 LLPLKQAIKLLSDT-------SESIPLIFLITDG--TVGDERG--ICNEIKSYLTNTRSI 454
                +  A++LL  +       S+S+ LI L+TDG  TVG+     I N ++  +    S+
Sbjct:   353 NNAVLLAVELLDRSNQAELLPSKSVSLIILLTDGDPTVGETNPTIIQNNVREAINGQYSL 412

Query:   455 SPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLE 514
                 C  G G   N+ FL+ +A    G     Y+      +++ F+   ++  L+++  E
Sbjct:   413 ---FC-LGFGFDVNYPFLEKMALDNGGLARRIYEDSDSALQLQDFYHEVANPLLSSVAFE 468

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005540 "hyaluronic acid binding" evidence=IDA

GO:0005576 "extracellular region" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006953 "acute-phase response" evidence=IEA

GO:0010466 "negative regulation of peptidase activity" evidence=IEA

GO:0030212 "hyaluronan metabolic process" evidence=IEA

GO:0030414 "peptidase inhibitor activity" evidence=IEA

UNIPROTKB|F1PG39 ITIH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 242 (90.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 66/259 (25%), Positives = 139/259 (53%)

Query:   326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQG 385
             K+++F++DVSGSM G+ ++QT  A+   L  L  +D F++I FN     + + +  A++ 
Sbjct:   309 KNILFVIDVSGSMWGIKMKQTVEAMKTILDDLRAEDQFSVIDFNHNVRTWRNDLVSATRT 368

Query:   386 TIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTS-------ESIPLIFLITDG--TVGD 436
              + +A +++  +   GGTNI   L +AI +L++ +       ES+ LI L++DG  TVG+
Sbjct:   369 QVTDAKKYIEKIQPSGGTNINEALLRAIFILNEANNLGLLDPESVSLIILVSDGDPTVGE 428

Query:   437 ER--GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDY 494
              +   I   +K ++ +  +IS  + + G+G   ++ FL+ L+   RG     Y       
Sbjct:   429 LKLSKIQKNVKQHIRD--NIS--LFSLGIGFDVDYDFLKRLSNENRGIAQRIYGNQDTSS 484

Query:   495 RIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSVQ- 553
             ++++F+   S+  L N+      H++  ++  +   ++     ++V+G+++ +  + +Q 
Sbjct:   485 QLKKFYNQVSTPLLRNVQFNYP-HMSVSDVTQNSFHNYFGGSEIVVAGKFNPDKLEQLQS 543

Query:   554 -VSGTMADTSNFIIELKAQ 571
              ++ T A+T   ++E  AQ
Sbjct:   544 IITATSANTE-LVLETLAQ 561

GO:0030212 "hyaluronan metabolic process" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

UNIPROTKB|E1BTM0 ITIH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 240 (89.5 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 73/265 (27%), Positives = 132/265 (49%)

Query:   326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKL-ASQ 384
             K+VVF++D S SM G  L QTK AL   L  L P+D FNII F+    ++     +  + 
Sbjct:   276 KNVVFVLDSSASMVGTKLRQTKEALFTILQDLRPEDHFNIIGFSNRIKVWQQDRLVPVTP 335

Query:   385 GTIINATQWLSSLVAGGGTNILLPLKQAIKLLSD-------TSESIPLIFLITDG--TVG 435
               I +A +++ ++   GGTNI   L+   KLL+D        + S+ LI  +TDG  TVG
Sbjct:   336 NNIRDAKKYIHNMSPTGGTNINSALQTGAKLLNDYIAQNNIDARSVSLIIFLTDGRPTVG 395

Query:   436 DERGICNEIKSYLTNTR-SISPRICTF--GVGLYCNHYFLQILAQIGRGYYDSAYDPGSV 492
             + +         L+NT+ +I  + C F  G+G   ++  L+ +A    G      +    
Sbjct:   396 ETQS-----SKILSNTKDAIRDKFCLFTIGIGNDVDYKLLERMALENCGMVRHFQEDEDA 450

Query:   493 DYRIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSV 552
                ++ F+    +  L+++ ++ S+  N  ++  +  P++     +I++G+   +  DS+
Sbjct:   451 ASHLKGFYDEIGTPLLSDIRIDYSED-NVEQVTQNFFPNYFNGSEIIIAGKLINHTSDSL 509

Query:   553 QVSGTMADTSNFIIELKAQNAKDIP 577
              V  T +++  +I+ LK   A D+P
Sbjct:   510 HVEVTASNSKKYIL-LKTDVAIDLP 533

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0030212 "hyaluronan metabolic process" evidence=IEA

MGI|MGI:96619 Itih2 "inter-alpha trypsin inhibitor, heavy chain 2" [Mus musculus (taxid:10090)]

 Score = 228 (85.3 bits), Expect = 2.7e-15, P = 2.7e-15
 Identities = 66/259 (25%), Positives = 135/259 (52%)

Query:   326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQG 385
             K+++F++DVSGSM G+ ++QT  A+   L  L   D F+++ FN     + + +  A++ 
Sbjct:   309 KNILFVIDVSGSMWGIKMKQTVEAMKTILDDLRTDDQFSVVDFNHNVRTWRNDLVSATKT 368

Query:   386 TIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTS-------ESIPLIFLITDG--TVGD 436
              I +A +++  +   GGTNI   L +AI +L++ S       +S+ LI L++DG  TVG+
Sbjct:   369 QIADAKRYIEKIQPSGGTNINEALLRAIFILNEASNMGLLNPDSVSLIILVSDGDPTVGE 428

Query:   437 ERGICNEIKSYLTNTRSISPRICTF--GVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDY 494
              +   ++I+  +   +SI   I  F  G+G   ++ FL+ L+   RG     Y       
Sbjct:   429 LK--LSKIQKNVK--QSIQDNISLFSLGIGFDVDYDFLKRLSNENRGIAQRIYGNQDTSS 484

Query:   495 RIRRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPDFCLECPLIVSGRYSGNFGDSVQ- 553
             ++++F+   S+  L N+     +  +  ++  ++  ++     ++V+G++  +    VQ 
Sbjct:   485 QLKKFYNQVSTPLLRNVQFNYPQ-ASVTDVTQNNFHNYFGGSEIVVAGKFDPSKLTEVQS 543

Query:   554 -VSGTMADTSNFIIELKAQ 571
              ++ T A+T   ++E  +Q
Sbjct:   544 IITATSANTE-LVLETLSQ 561

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0010466 "negative regulation of peptidase activity" evidence=IEA

GO:0030212 "hyaluronan metabolic process" evidence=IEA

GO:0030414 "peptidase inhibitor activity" evidence=IEA

RGD|70881 Itih4 "inter-alpha-trypsin inhibitor heavy chain family, member 4" [Rattus norvegicus (taxid:10116)]

 Score = 227 (85.0 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 66/201 (32%), Positives = 106/201 (52%)

Query:   326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQG 385
             K+V+F++D SGSM G  ++QT+ AL   L  L+ QD FNII F+GE + +   +  A++ 
Sbjct:   273 KNVLFVIDKSGSMAGKKIQQTREALIKILKDLSTQDQFNIIVFSGEANQWEQLLVQATEE 332

Query:   386 TIINATQWLSSLVAGGGTNILLPLKQAIKLLSDT-------SESIPLIFLITDG--TVGD 436
              +  A  + S + A GGTNI   +  A++LL  +       S+S+ LI L+TDG  TVG+
Sbjct:   333 NLNRAVDYASKIPAQGGTNINKAVLSAVELLDKSNQAELLPSKSVSLIILLTDGEPTVGE 392

Query:   437 ERGICNEIKSYLTNTR-SISPRICTF--GVGLYCNHYFLQILAQIGRGYYDSAYDPGSVD 493
                     K    NT+ +I+ R   F  G G   N+ FL+ LA    G     Y+     
Sbjct:   393 TNP-----KIIQKNTQEAINGRYSLFCLGFGFDVNYPFLEKLALDNGGLARRIYEDSDSA 447

Query:   494 YRIRRFFTAASSVFLTNMTLE 514
              +++ F+   ++  L+++T E
Sbjct:   448 LQLQDFYQEVANPLLSSVTFE 468

GO:0003674 "molecular_function" evidence=ND

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006953 "acute-phase response" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0030212 "hyaluronan metabolic process" evidence=IEA

GO:0034097 "response to cytokine stimulus" evidence=ISO

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005540 "hyaluronic acid binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_158000012 hypothetical protein (742 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	591
cd01461	171	cd01461, vWA_interalpha_trypsin_inhibitor, vWA_int	4e-60
TIGR03788	596	TIGR03788, marine_srt_targ, marine proteobacterial	4e-44
cd00198	161	cd00198, vWFA, Von Willebrand factor type A (vWA)	5e-24
cd01465	170	cd01465, vWA_subgroup, VWA subgroup: Von Willebran	5e-20
pfam13768	156	pfam13768, VWA_3, von Willebrand factor type A dom	2e-18
pfam13519	172	pfam13519, VWA_2, von Willebrand factor type A dom	5e-16
pfam00092	178	pfam00092, VWA, von Willebrand factor type A domai	1e-15
smart00327	175	smart00327, VWA, von Willebrand factor (vWF) type	4e-15
cd01463	190	cd01463, vWA_VGCC_like, VWA Voltage gated Calcium	2e-13
cd01466	155	cd01466, vWA_C3HC4_type, VWA C3HC4-type: Von Wille	2e-13
COG2304	399	COG2304, COG2304, Uncharacterized protein containi	1e-09
cd01464	176	cd01464, vWA_subfamily, VWA subfamily: Von Willebr	9e-09
COG1240	261	COG1240, ChlD, Mg-chelatase subunit ChlD [Coenzyme	7e-07
cd01450	161	cd01450, vWFA_subfamily_ECM, Von Willebrand factor	1e-06
COG4245	207	COG4245, TerY, Uncharacterized protein encoded in	2e-06
TIGR02442	633	TIGR02442, Cob-chelat-sub, cobaltochelatase subuni	2e-06
cd01462	152	cd01462, VWA_YIEM_type, VWA YIEM type: Von Willebr	3e-06
cd01451	178	cd01451, vWA_Magnesium_chelatase, Magnesium chelat	6e-05
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	3e-04
cd01471	186	cd01471, vWA_micronemal_protein, Micronemal protei	8e-04
cd01467	180	cd01467, vWA_BatA_type, VWA BatA type: Von Willebr	0.002
COG2425	437	COG2425, COG2425, Uncharacterized protein containi	0.002
TIGR03436	296	TIGR03436, acidobact_VWFA, VWFA-related Acidobacte	0.003

>gnl|CDD|238738 cd01461, vWA_interalpha_trypsin_inhibitor, vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin)

 Score =  197 bits (502), Expect = 4e-60
 Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 4/175 (2%)

Query: 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLAS 383
             K+VVF++D SGSM G  +EQTK AL  +L  L P D FNII F+     FS S   A+
Sbjct: 1   LPKEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPSSVSAT 60

Query: 384 QGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNE 443
              +  A ++++ L A GGTN+   L+ A++LL+ +  S+P I L+TDG V +E  I   
Sbjct: 61  AENVAAAIEYVNRLQALGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTNESQILKN 120

Query: 444 IKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRR 498
           ++  L    S   R+ TFG+G   N Y L+ LA+ GRG     Y+   ++ ++ R
Sbjct: 121 VREAL----SGRIRLFTFGIGSDVNTYLLERLAREGRGIARRIYETDDIESQLLR 171

Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix. Length = 171

>gnl|CDD|234353 TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein

 Score =  165 bits (420), Expect = 4e-44
 Identities = 110/472 (23%), Positives = 204/472 (43%), Gaps = 72/472 (15%)

Query: 155 AEYKENVGKSKGDGRY--LKGQ----IYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCL 208
           A  +    ++K +G+   L  Q    ++T ++  +  G T+ + + + Q ++Y  G F L
Sbjct: 64  AAARAIYEQAKAEGKKAALVEQQRPNLFTNKVANIGPGETVVVTIEYQQPVSYSSGTFSL 123

Query: 209 SVPFTF-PAYVIPLG----------------RKIPKSEKII------------------- 232
            +P T  P Y+                     ++P ++KI                    
Sbjct: 124 RLPLTVTPRYIPGSTVNTVTDVNNSGWAIPTTQVPDADKISAPRVLDPDDDAPSSQASIN 183

Query: 233 LNVNSGVS-EQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFG 291
           +++N+G+  + I     SHP++   +     + S        ++ DF  ++  A      
Sbjct: 184 VDLNAGLPLDSITSP--SHPIQIEQQGQSGYTISLAQGQVI-ADRDFVLTWRPAQG---- 236

Query: 292 GVLLQSPSLHDFDQRQ---IFCLYLF--PGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQT 346
               ++PS   F ++     + L +   P ++   +V  +++VF++D SGSM G  +EQ 
Sbjct: 237 ----EAPSAALFREQIGGERYGLAMVMPPTEAAVAQVLPRELVFVIDTSGSMAGESIEQA 292

Query: 347 KNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNIL 406
           K+AL  +L +L P D FNII F+ +  L       A+   +  A Q+++ L A GGT + 
Sbjct: 293 KSALLLALDQLRPGDRFNIIQFDSDVTLLFPVPVPATAHNLARARQFVAGLQADGGTEMA 352

Query: 407 LPLKQAIKLLSDTSES---IPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGV 463
             L  A  L  D  ES   +  +  +TDG VG+E  +   I++ L ++     R+ T G+
Sbjct: 353 GALSAA--LRDDGPESSGALRQVVFLTDGAVGNEDALFQLIRTKLGDS-----RLFTVGI 405

Query: 464 GLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLE 523
           G   N YF++  AQ GRG +        V  ++ + F       LT++ L      N+ +
Sbjct: 406 GSAPNSYFMRKAAQFGRGSFTFIGSTDEVQRKMSQLFAKLEQPALTDIALTFDNG-NAAD 464

Query: 524 LFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKD 575
           ++PS IPD     PL ++ +        +Q++G       +  +L   +A  
Sbjct: 465 VYPSPIPDLYRGEPLQIAIK-LQQAAGELQLTGRTGSQ-PWSQQLDLDSAAP 514

Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092). Length = 596

>gnl|CDD|238119 cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 98.4 bits (245), Expect = 5e-24
 Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 9/162 (5%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNALSA---SLSKLNPQDSFNIIAFNGETHLFSSSMKLAS 383
           D+VFL+DVSGSM G  L++ K AL A   SLS   P D   ++ F     +         
Sbjct: 2   DIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTD 61

Query: 384 QGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSD--TSESIPLIFLITDGTVGDERGIC 441
           +  ++ A   L     GGGTNI   L+ A++LL       +  +I L+TDG   D   + 
Sbjct: 62  KADLLEAIDALKKG-LGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELL 120

Query: 442 NEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483
            E    L   R +   + T G+G   N   L+ +A    G  
Sbjct: 121 AEAAREL---RKLGITVYTIGIGDDANEDELKEIADKTTGGA 159

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Length = 161

>gnl|CDD|238742 cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 87.3 bits (217), Expect = 5e-20
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 9/160 (5%)

Query: 329 VFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTII 388
           VF++D SGSM G  L   K+AL   + +L P D   I+ ++G       +  +  +  I+
Sbjct: 4   VFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAETVLPATPVRDKAAIL 63

Query: 389 NATQWLSSLVAGGGTNILLPLKQAIKLLSDTSES--IPLIFLITDG--TVGDERGICNEI 444
            A   +  L AGG T     ++   +          +  I L TDG   VG+     +E+
Sbjct: 64  AA---IDRLTAGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETD--PDEL 118

Query: 445 KSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYD 484
              +   R     + T G G   N   ++ +A  G G   
Sbjct: 119 ARLVAQKRESGITLSTLGFGDNYNEDLMEAIADAGNGNTA 158

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the VWA domain in these proteins. The members do have a conserved MIDAS motif. The biochemical function however is not known. Length = 170

>gnl|CDD|222367 pfam13768, VWA_3, von Willebrand factor type A domain

 Score = 82.1 bits (203), Expect = 2e-18
 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 6/160 (3%)

Query: 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQG 385
            DVV LVDVS SM G  +   K+ALSA L  L P+D FN++ F  E        +  S  
Sbjct: 1   GDVVILVDVSSSMSGEPINLVKDALSAILRSLPPRDKFNVVLFGTEPRPLFPGGRAVSSS 60

Query: 386 TIINATQWLSSLVA-GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEI 444
            +    Q++ +L    GGTN+L  LK A++ L      I  + L++DG+  D     +  
Sbjct: 61  HLQELLQFIKTLEPPLGGTNLLGALKLAMRALKSP-GIIRHVLLLSDGSPSDNP---SRT 116

Query: 445 KSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYD 484
              +            +G+G   +   LQ LA+ G G Y+
Sbjct: 117 SQLIRQAPRHIRIFA-YGLGPTLSPDMLQELAEAGGGSYE 155

Length = 156

>gnl|CDD|222192 pfam13519, VWA_2, von Willebrand factor type A domain

 Score = 75.5 bits (186), Expect = 5e-16
 Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 17/175 (9%)

Query: 327 DVVFLVDVSGSMQGVL-----LEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKL 381
           D+V ++DVSGSM         L + K A++  L++L P D   +IAF G  +L       
Sbjct: 1   DLVIVLDVSGSMNATDLKPSRLTRAKAAIADLLARL-PGDRVGLIAFAGSAYLVLPLT-- 57

Query: 382 ASQGTIINATQWLSS-LVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGI 440
             +  +  A   LS  ++ GGGTN+   L  A++LL+        I LITDG   D   +
Sbjct: 58  DDRAALAAALPALSPRIMPGGGTNLAAALALALRLLAGAGGGSGAIVLITDG--EDTPSL 115

Query: 441 CNEIKSYLTNTRSISPRICTFGVGLYCNHY-FLQILAQIGRG-YYDSAYDPGSVD 493
                +     +    R+   GVG        LQ LA+   G Y D+  D   +D
Sbjct: 116 LEAASA----LKQAGVRVYVLGVGTDEGAEDALQRLAKATGGRYVDATADAADLD 166

Length = 172

>gnl|CDD|215711 pfam00092, VWA, von Willebrand factor type A domain

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 15/162 (9%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNALSA---SLSKLNPQDSFNIIAFNGETHLFSSSMKLAS 383
           D+VFL+D SGS+     E+ K  +      L          ++ ++ +     S     S
Sbjct: 1   DIVFLLDGSGSIGEANFEKVKEFIKKLVERLDIGPDGTRVGLVQYSSDVTTEFSLNDYKS 60

Query: 384 QGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTS-----ESIPLIFLITDGTVGDER 438
           +  +++A    +    GGGTN    LK A++ L  +S      +  ++ L+TDG   D  
Sbjct: 61  KDDLLSA-VSKNIYYLGGGTNTGKALKYALENLFSSSAGSRPNAPKVVILLTDGKSNDGG 119

Query: 439 GICNEIKSYLTNTRSISPRICTFGVG-LYCNHYFLQILAQIG 479
            +     +           I  FGVG    +   L+++A   
Sbjct: 120 LVPAAAAALRRKV-----GIIVFGVGVGDVDEEELRLIASEP 156

Length = 178

>gnl|CDD|214621 smart00327, VWA, von Willebrand factor (vWF) type A domain

 Score = 73.3 bits (180), Expect = 4e-15
 Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 12/166 (7%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLAS 383
           DVVFL+D SGSM G   E  K  +   + +L+     D   ++ F+ +  +        S
Sbjct: 1   DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDSRS 60

Query: 384 QGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSES-----IPLIFLITDGTVGDER 438
           +  ++ A   L S   GGGTN+   L+ A++ L   S         ++ LITDG   D  
Sbjct: 61  KDALLEALASL-SYKLGGGTNLGAALQYALENLFSKSAGSRRGAPKVVILITDGESNDGP 119

Query: 439 GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYD 484
               ++       +    ++   GVG   +   L+ LA    G Y 
Sbjct: 120 K---DLLKAAKELKRSGVKVFVVGVGNDVDEEELKKLASAPGGVYV 162

VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods. Length = 175

>gnl|CDD|238740 cd01463, vWA_VGCC_like, VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 53/173 (30%), Positives = 77/173 (44%), Gaps = 18/173 (10%)

Query: 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHL----FSSSMKL 381
           KD+V L+DVSGSM G  L   K  +S+ L  L+  D FNII F+ E +     F+ ++  
Sbjct: 14  KDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCFNDTLVQ 73

Query: 382 ASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDT---------SESIPLIFLITDG 432
           A+        + L  L A G  N    L+ A  LL            S+    I LITDG
Sbjct: 74  ATTSNKKVLKEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDG 133

Query: 433 TVGDERGICNEIKSYLTNTRSISP-RICTFGVGLY-CNHYFLQILAQIGRGYY 483
              + + I      Y  +  S  P R+ T+ +G    +   +Q +A   +GYY
Sbjct: 134 VPENYKEI---FDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMACENKGYY 183

The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex. Length = 190

>gnl|CDD|238743 cd01466, vWA_C3HC4_type, VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 17/162 (10%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGT 386
           D+V ++DVSGSM G  L+  K+AL   +S L   D  +I+ F+      S   ++ ++G 
Sbjct: 2   DLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSPLRRMTAKG- 60

Query: 387 IINATQW---LSSLVAGGGTNILLPLKQAIKLLSDTSESIPL--IFLITDGTVGDERGIC 441
                     +  L AGGGTN++  LK+A+K+L D  +  P+  I L++DG   D  G  
Sbjct: 61  ---KRSAKRVVDGLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQ--DNHG-- 113

Query: 442 NEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483
               + +    +    I TFG+G   +   L  +A+I  G +
Sbjct: 114 ----AVVLRADNAPIPIHTFGLGASHDPALLAFIAEITGGTF 151

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Membes of this subgroup belong to Zinc-finger family as they are found fused to RING finger domains. The MIDAS motif is not conserved in all the members of this family. The function of vWA domains however is not known. Length = 155

>gnl|CDD|225187 COG2304, COG2304, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 46/210 (21%), Positives = 79/210 (37%), Gaps = 10/210 (4%)

Query: 305 QRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFN 364
              +  +  F            ++   +D SGSM G LLE  K+A    ++ LNP D  +
Sbjct: 19  LALVILIGAFAIDLDLLV--PANLTLAIDTSGSMTGALLELAKSAAIELVNGLNPGDLLS 76

Query: 365 IIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSD--TSES 422
           I+ F G   +        ++ +I  A     SL AGG T +   L  A++L +      +
Sbjct: 77  IVTFAGSADVLIPPTGATNKESITAAID--QSLQAGGATAVEASLSLAVELAAKALPRGT 134

Query: 423 IPLIFLITDGTVGDERGICN--EIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGR 480
           +  I L+TDG   +  G+ +   + +           + T G+G   N   L  +A    
Sbjct: 135 LNRILLLTDGE--NNLGLVDPSRLSALAKLAAGKGIVLDTLGLGDDVNEDELTGIAAAAN 192

Query: 481 GYYDSAYDPGSVDYRIRRFFTAASSVFLTN 510
           G     Y     + +       + +V L  
Sbjct: 193 GNLAFIYLSSLSEAQFVIALEKSQTVLLVI 222

Length = 399

>gnl|CDD|238741 cd01464, vWA_subfamily, VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 40/168 (23%), Positives = 59/168 (35%), Gaps = 33/168 (19%)

Query: 328 VVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSF-------NIIAFNGETHLFSSSMK 380
           +  L+D SGSM G  +E     L    S+L  QD +       ++I F+    +      
Sbjct: 6   IYLLLDTSGSMAGEPIEALNQGLQMLQSELR-QDPYALESVEISVITFDSAARVIVPLTP 64

Query: 381 LASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLL----SDTSESI-----PLIFLITD 431
           L S             L A GGT++   L+ A+  +                P +FL+TD
Sbjct: 65  LES--------FQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTD 116

Query: 432 GTVGDERGICNE-IKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQI 478
           G   D+     E IK    +   I        VG   +      L QI
Sbjct: 117 GEPTDDLTAAIERIKEARDSKGRIVA----CAVGPKADL---DTLKQI 157

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup have no assigned function. This subfamily is typified by the presence of a conserved MIDAS motif. Length = 176

>gnl|CDD|224161 COG1240, ChlD, Mg-chelatase subunit ChlD [Coenzyme metabolism]

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 25/145 (17%)

Query: 316 GKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP----QDSFNIIAFNG- 370
            K +  +     +VF+VD SGSM      +   A  A+LS L      +D   +IAF G 
Sbjct: 70  EKIREGRA-GNLIVFVVDASGSMAA--RRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGE 126

Query: 371 ETHL---FSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLS----DTSESI 423
           +  L    +SS++LA         + L  L  GG T +   L+QA ++L+       +  
Sbjct: 127 KAELLLPPTSSVELAE--------RALERLPTGGKTPLADALRQAYEVLAREKRRGPDRR 178

Query: 424 PLIFLITDG--TVGDERGICNEIKS 446
           P++ +ITDG   V    G   E   
Sbjct: 179 PVMVVITDGRANVPIPLGPKAETLE 203

Length = 261

>gnl|CDD|238727 cd01450, vWFA_subfamily_ECM, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 12/145 (8%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN--PQDS-FNIIAFNGETHLFSSSMKLAS 383
           D+VFL+D S S+     E+ K+ +   + KL+  P  +   ++ ++ +  +  S     S
Sbjct: 2   DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKS 61

Query: 384 QGTIINATQWLSSLVAGGGTNILLPLKQAIKLL---SDTSESIP-LIFLITDGTVGDERG 439
           +  ++ A + L  L  GGGTN    L+ A++ L   S+  E++P +I ++TDG   D   
Sbjct: 62  KDDLLKAVKNLKYLG-GGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGGD 120

Query: 440 ICNEIKSYLTNTRSISPRICTFGVG 464
                       +    ++   GVG
Sbjct: 121 PKEAAAKL----KDEGIKVFVVGVG 141

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains . Length = 161

>gnl|CDD|226696 COG4245, TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 36/133 (27%), Positives = 48/133 (36%), Gaps = 33/133 (24%)

Query: 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSF-------NIIAFNGETHLFSS 377
           R     L+D SGSM G  +E     L   +  L  QD +       +I+ F G   +   
Sbjct: 3   RLPCYLLLDTSGSMIGEPIEALNAGLQMMIDTLK-QDPYALERVELSIVTFGGPARVIQP 61

Query: 378 SMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSD-------------TSESIP 424
               A+     N       L A GGT    PL  A+ L  D               +  P
Sbjct: 62  FTDAAN----FNPPI----LTAQGGT----PLGAALTLALDMIEERKRKYDANGKGDYRP 109

Query: 425 LIFLITDGTVGDE 437
            +FLITDG   D+
Sbjct: 110 WVFLITDGEPTDD 122

Length = 207

>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 18/115 (15%)

Query: 328 VVFLVDVSGSMQGVL-LEQTKNA-LSASLSKLNPQDSFNIIAFNG-ETHL---FSSSMKL 381
           V+F+VD SGSM     +   K A LS        +D   +I F G E  +    +SS++L
Sbjct: 468 VIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPTSSVEL 527

Query: 382 ASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSES----IPLIFLITDG 432
           A++         L  L  GG T +   L +A ++LS+         PL+ +ITDG
Sbjct: 528 AARR--------LEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDG 574

Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (pfam06180). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. Length = 633

>gnl|CDD|238739 cd01462, VWA_YIEM_type, VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQD-SFNIIAFNGETHLFSSSMKLASQ 384
             V+ LVD SGSM G   E  K    A L     ++    +I F+ E            +
Sbjct: 1   GPVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTKIVDKTDDLE 60

Query: 385 GTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDG 432
             +    ++LS +  GGGT+I   L+ A++L+         I LITDG
Sbjct: 61  EPV----EFLSGVQLGGGTDINKALRYALELIERRDPRKADIVLITDG 104

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup have a conserved MIDAS motif, however, their biochemical function is not well characterised. Length = 152

>gnl|CDD|238728 cd01451, vWA_Magnesium_chelatase, Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto)

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 21/116 (18%)

Query: 328 VVFLVDVSGSMQGVLLEQTKNALSASLSKLNP----QDSFNIIAFNG-ETHLF---SSSM 379
           V+F+VD SGSM      +   A  A LS L      +D   +IAF G E  +    + S+
Sbjct: 3   VIFVVDASGSMA--ARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPTRSV 60

Query: 380 KLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESI---PLIFLITDG 432
           +LA +         L+ L  GGGT +   L  A +L ++ +      PLI +ITDG
Sbjct: 61  ELAKRR--------LARLPTGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDG 108

In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions. Length = 178

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 328 VVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGETHLFSSSMKLASQGT 386
           ++F+VD SGS     + + K A+   L +    +D  ++IAF G     ++ + L    +
Sbjct: 410 LIFVVDASGSAAVARMSEAKGAVELLLGEAYVHRDQVSLIAFRGT----AAEVLLPPSRS 465

Query: 387 IINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESI--PLIFLITDG 432
           +  A + L  L  GGGT +   L  A +       S   P I LITDG
Sbjct: 466 VEQAKRRLDVLPGGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDG 513

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|238748 cd01471, vWA_micronemal_protein, Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 42/164 (25%), Positives = 61/164 (37%), Gaps = 21/164 (12%)

Query: 327 DVVFLVDVSGSM-QGVLLEQTKNALSASLSKLN--PQD---SFNIIAFNGETHLFSSSMK 380
           D+  LVD SGS+     +      L   +  LN  P +        + N +  +  SS  
Sbjct: 2   DLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPN 61

Query: 381 LASQGTIINATQWLSSL-VAGGGTNILLPLKQAIKLLSDTSES----IPLIFLITDGTVG 435
             ++   +NA + L SL    G TN    L    K L DT  +      L+ ++TD    
Sbjct: 62  STNKDLALNAIRALLSLYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTD---- 117

Query: 436 DERGICNEIKSYLTNTRSISPR---ICTFGVGLYCNHYFLQILA 476
              GI +     L   R +  R   I   GVG   NH   + L 
Sbjct: 118 ---GIPDSKFRTLKEARKLRERGVIIAVLGVGQGVNHEENRSLV 158

In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners. Length = 186

>gnl|CDD|238744 cd01467, vWA_BatA_type, VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 15/117 (12%)

Query: 327 DVVFLVDVSGSMQGV------LLEQTKNALSASLSKLNPQDSFNIIAFNGETHL---FSS 377
           D++  +DVSGSM          LE  K  LS  + +    D   ++ F G        + 
Sbjct: 4   DIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDR-RENDRIGLVVFAGAAFTQAPLTL 62

Query: 378 SMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTV 434
             +   +  ++   +     +AG GT I   +  AIK L ++     +I L+TDG  
Sbjct: 63  DRESLKE--LLEDIK---IGLAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGEN 114

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup are bacterial in origin. They are typified by the presence of a MIDAS motif. Length = 180

>gnl|CDD|225281 COG2425, COG2425, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 13/124 (10%)

Query: 311 LYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK--LNPQDSFNIIAF 368
            Y   GKS         V+ L+D SGSM G   EQ   A++ +L +  L       +I F
Sbjct: 264 TYRLQGKS------EGPVILLLDKSGSMSGF-KEQWAKAVALALMRIALAENRDCYVILF 316

Query: 369 NGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFL 428
           + E   +        +  I    ++L S V GGGT+I   L+ A++ L         I +
Sbjct: 317 DSEVIEY---ELYEKKIDIEELIEFL-SYVFGGGTDITKALRSALEDLKSRELFKADIVV 372

Query: 429 ITDG 432
           ITDG
Sbjct: 373 ITDG 376

Length = 437

>gnl|CDD|234208 TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial domain

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 316 GKSQSRKVFRKD------VVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFN 369
           GK Q+   FR++      V  ++D SGSM+  L      A+    + L P D   ++ FN
Sbjct: 38  GKPQTIASFRRETDLPLTVGLVIDTSGSMRNDLDRARAAAIRFLKTVLRPNDRVFVVTFN 97

Query: 370 GETHL---FSSSMKL 381
               L   F+S  +L
Sbjct: 98  TRLRLLQDFTSDPRL 112

Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196. Length = 296

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	591
TIGR03788	596	marine_srt_targ marine proteobacterial sortase tar	100.0
PF13768	155	VWA_3: von Willebrand factor type A domain	99.94
cd01461	171	vWA_interalpha_trypsin_inhibitor vWA_interalpha tr	99.93
PF08487	118	VIT: Vault protein inter-alpha-trypsin domain; Int	99.92
cd01463	190	vWA_VGCC_like VWA Voltage gated Calcium channel li	99.91
smart00609	130	VIT Vault protein Inter-alpha-Trypsin domain.	99.91
cd01466	155	vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact	99.89
cd01465	170	vWA_subgroup VWA subgroup: Von Willebrand factor t	99.88
cd01470	198	vWA_complement_factors Complement factors B and C2	99.86
cd01456	206	vWA_ywmD_type VWA ywmD type:Von Willebrand factor	99.86
PRK13685	326	hypothetical protein; Provisional	99.81
TIGR00868	863	hCaCC calcium-activated chloride channel protein 1	99.8
cd01451	178	vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch	99.79
cd01480	186	vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI	99.79
cd01467	180	vWA_BatA_type VWA BatA type: Von Willebrand factor	99.79
TIGR02921	952	PEP_integral PEP-CTERM family integral membrane pr	99.78
cd01464	176	vWA_subfamily VWA subfamily: Von Willebrand factor	99.78
cd01472	164	vWA_collagen von Willebrand factor (vWF) type A do	99.77
cd01474	185	vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi	99.77
cd01453	183	vWA_transcription_factor_IIH_type Transcription fa	99.77
PF13519	172	VWA_2: von Willebrand factor type A domain; PDB: 3	99.76
cd01471	186	vWA_micronemal_protein Micronemal proteins: The To	99.74
TIGR03436	296	acidobact_VWFA VWFA-related Acidobacterial domain.	99.74
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	99.73
cd01477	193	vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand	99.72
cd01469	177	vWA_integrins_alpha_subunit Integrins are a class	99.72
cd01462	152	VWA_YIEM_type VWA YIEM type: Von Willebrand factor	99.7
cd01482	164	vWA_collagen_alphaI-XII-like Collagen: The extrace	99.69
cd01450	161	vWFA_subfamily_ECM Von Willebrand factor type A (v	99.69
PTZ00441	576	sporozoite surface protein 2 (SSP2); Provisional	99.69
cd01454	174	vWA_norD_type norD type: Denitrifying bacteria con	99.69
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	99.67
cd01473	192	vWA_CTRP CTRP for CS protein-TRAP-related protein:	99.67
PF00092	178	VWA: von Willebrand factor type A domain; InterPro	99.66
cd01476	163	VWA_integrin_invertebrates VWA_integrin (invertebr	99.65
smart00327	177	VWA von Willebrand factor (vWF) type A domain. VWA	99.62
cd01455	191	vWA_F11C1-5a_type Von Willebrand factor type A (vW	99.62
COG1240	261	ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis	99.61
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	99.6
PF13757	78	VIT_2: Vault protein inter-alpha-trypsin domain	99.58
cd00198	161	vWFA Von Willebrand factor type A (vWA) domain was	99.57
cd01481	165	vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V	99.54
COG4245	207	TerY Uncharacterized protein encoded in toxicity p	99.54
cd01457	199	vWA_ORF176_type VWA ORF176 type: Von Willebrand fa	99.53
KOG2353	1104	consensus L-type voltage-dependent Ca2+ channel, a	99.53
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.5
cd01452	187	VWA_26S_proteasome_subunit 26S proteasome plays a	99.34
PF10138	200	vWA-TerF-like: vWA found in TerF C terminus ; Inte	99.28
PRK10997	487	yieM hypothetical protein; Provisional	99.23
COG2425	437	Uncharacterized protein containing a von Willebran	99.21
cd01460	266	vWA_midasin VWA_Midasin: Midasin is a member of th	99.21
cd01458	218	vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter	99.04
PF11775	219	CobT_C: Cobalamin biosynthesis protein CobT VWA do	98.99
PF05762	222	VWA_CoxE: VWA domain containing CoxE-like protein;	98.77
TIGR01651	600	CobT cobaltochelatase, CobT subunit. This model de	98.72
PF04056	193	Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro	98.64
COG4867	652	Uncharacterized protein with a von Willebrand fact	98.59
PF09967	126	DUF2201: VWA-like domain (DUF2201); InterPro: IPR0	98.57
KOG3768	888	consensus DEAD box RNA helicase [General function	98.55
COG4548	637	NorD Nitric oxide reductase activation protein [In	98.45
COG2304	399	Uncharacterized protein containing a von Willebran	98.37
cd01459	254	vWA_copine_like VWA Copine: Copines are phospholip	98.32
cd01468	239	trunk_domain trunk domain. COPII-coated vesicles c	98.26
KOG2807	378	consensus RNA polymerase II transcription initiati	98.2
PF04811	243	Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I	98.11
cd01479	244	Sec24-like Sec24-like: Protein and membrane traffi	98.04
PRK05325	401	hypothetical protein; Provisional	97.96
COG4547	620	CobT Cobalamin biosynthesis protein CobT (nicotina	97.93
cd01478	267	Sec23-like Sec23-like: Protein and membrane traffi	97.9
PLN00162	761	transport protein sec23; Provisional	97.75
PF04285	421	DUF444: Protein of unknown function (DUF444); Inte	97.71
PF06707	205	DUF1194: Protein of unknown function (DUF1194); In	97.67
TIGR02877	371	spore_yhbH sporulation protein YhbH. This protein	97.65
COG3552	395	CoxE Protein containing von Willebrand factor type	97.54
PF11443	534	DUF2828: Domain of unknown function (DUF2828); Int	97.48
KOG1985	887	consensus Vesicle coat complex COPII, subunit SEC2	97.47
PTZ00395	1560	Sec24-related protein; Provisional	97.46
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.4
smart00187	423	INB Integrin beta subunits (N-terminal portion of	97.34
PF03731	224	Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte	97.25
PF07002	146	Copine: Copine; InterPro: IPR010734 This represent	97.18
KOG2884	259	consensus 26S proteasome regulatory complex, subun	96.84
TIGR00627	279	tfb4 transcription factor tfb4. This family is bas	96.76
COG5151	421	SSL1 RNA polymerase II transcription initiation/nu	96.69
KOG1984	1007	consensus Vesicle coat complex COPII, subunit SFB3	96.64
TIGR00578	584	ku70 ATP-dependent DNA helicase ii, 70 kDa subunit	96.46
PF03850	276	Tfb4: Transcription factor Tfb4; InterPro: IPR0046	96.34
COG5148	243	RPN10 26S proteasome regulatory complex, subunit R	96.32
COG2718	423	Uncharacterized conserved protein [Function unknow	96.13
COG5028	861	Vesicle coat complex COPII, subunit SEC24/subunit	95.87
PF11265	226	Med25_VWA: Mediator complex subunit 25 von Willebr	95.82
COG3864	396	Uncharacterized protein conserved in bacteria [Fun	95.74
PF14415	253	DUF4424: Domain of unknown function (DUF4424)	95.4
KOG4465	598	consensus Uncharacterized conserved protein [Funct	95.37
COG1721	416	Uncharacterized conserved protein (some members co	94.55
KOG1986	745	consensus Vesicle coat complex COPII, subunit SEC2	93.03
COG5242	296	TFB4 RNA polymerase II transcription initiation/nu	92.12
PF00362	426	Integrin_beta: Integrin, beta chain; InterPro: IPR	91.12
KOG2487	314	consensus RNA polymerase II transcription initiati	83.82
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	80.91

>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein

Probab=100.00  E-value=1.5e-73  Score=636.79  Aligned_cols=486  Identities=22%  Similarity=0.365  Sum_probs=404.6

Q ss_pred             ceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEehHhhhhhhhhccc-
Q 007718           86 MHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKS-  164 (591)
Q Consensus        86 ~~~v~v~V~~~~~~a~v~~~q~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k~~a~~~~~~~~~-  164 (591)
                      +++|+++|.|.+  |+|+++|+|.|   ++++++||.|+||||++|+|++|+|+||||+|+|+|+||++|++.|+.+++ 
T Consensus         2 ~~~v~~~V~g~~--A~v~v~q~f~N---~~~~~~E~~y~fPLp~~aaV~~f~~~i~~r~i~g~v~eKe~A~~~Ye~a~~~   76 (596)
T TIGR03788         2 DTDANITVTGLI--ARTEVTQTFRN---PSQFWVEGRYVFPLPENAAVDSLTMHIGERVIVGQIMPKAAARAIYEQAKAE   76 (596)
T ss_pred             CceEEEEEEcce--EEEEEEEEEEC---CCCCcEEEEEEeeCCCCcEEEEEEEEECCEEEEEEEeeHHHHHHHHHHHHHh
Confidence            578899998884  77999999999   788999999999999999999999999999999999999999986655555 


Q ss_pred             cCCccce---ecCceEEEcCCCCCCCEEEEEEEEEEeeecccCeEEEEEeeec-ceeccCCCC----------------C
Q 007718          165 KGDGRYL---KGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTF-PAYVIPLGR----------------K  224 (591)
Q Consensus       165 ~~~~~ll---~~~~F~~~v~~i~~g~~v~I~i~y~q~L~~~~g~~~~~lp~~~-P~~v~p~~~----------------~  224 (591)
                      +++++|+   ++|+|+++|||||||++++|+|+|+|+|.+++|.|++++|+++ |+|..+...                .
T Consensus        77 G~~a~Lleq~~~~~F~~~V~nIpp~~~v~i~l~Y~q~L~~~~g~~~~~lP~~~~pry~~~~~~~~~~~~~~~~~~~~~~~  156 (596)
T TIGR03788        77 GKKAALVEQQRPNLFTNKVANIGPGETVVVTIEYQQPVSYSSGTFSLRLPLTVTPRYIPGSTVNTVTDVNNSGWAIPTTQ  156 (596)
T ss_pred             ccceeeeecccCCceeEEeeccCCCCEEEEEEEEEEEeeecCCEEEEEeeeeecCCccCCcccccccccccccccccccc
Confidence            5667787   6999999999999999999999999999999999998877765 655421100                0


Q ss_pred             C-------------------CCcceEEEEEEcCCceeeeeccCCccceeeecccceEEEeecccccccCCCccEEEEEec
Q 007718          225 I-------------------PKSEKIILNVNSGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVA  285 (591)
Q Consensus       225 ~-------------------~~~~~i~~~v~~~~~~~i~i~s~sh~l~~~~~~~~~~~~~~~~~~~~~~~~Df~l~~~~~  285 (591)
                      .                   .....++++++.+.+. ..+.|++|++++.+.......++++.. ..++++||+|.|.+.
T Consensus       157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~i-~~i~s~~h~i~~~~~~~~~~~v~l~~~-~~~~d~Df~l~~~~~  234 (596)
T TIGR03788       157 VPDADKISAPRVLDPDDDAPSSQASINVDLNAGLPL-DSITSPSHPIQIEQQGQSGYTISLAQG-QVIADRDFVLTWRPA  234 (596)
T ss_pred             cccccccCCccccCcccCCCCcceEEEEEecCCCcc-ceeeCCCCceEeecCCCceEEEEeCCC-CcCCCCCEEEEEEeC
Confidence            0                   0113344444444432 258899999988766655566666542 368999999999997


Q ss_pred             cCCCccceEeeCCCCCCCCCcceEEEEEecCCC-CCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEE
Q 007718          286 STDLFGGVLLQSPSLHDFDQRQIFCLYLFPGKS-QSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFN  364 (591)
Q Consensus       286 ~~~~~~~v~~~~~~~~~~d~~~~f~~~~~P~~~-~~~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~  364 (591)
                      ..+.. ..++..   +..++.+||++++.|+.. ......|++++||||+||||.|.+++.+|+++..++..|+++|+|+
T Consensus       235 ~~~~p-~~~~~~---~~~~~~~y~~~~~~pp~~~~~~~~~p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~  310 (596)
T TIGR03788       235 QGEAP-SAALFR---EQIGGERYGLAMVMPPTEAAVAQVLPRELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGDRFN  310 (596)
T ss_pred             CCCCc-eEEEEE---EccCCCcEEEEEEeCCCccccccCCCceEEEEEECCCCCCCccHHHHHHHHHHHHHhCCCCCEEE
Confidence            65533 333321   112455789888988863 2345788999999999999999999999999999999999999999


Q ss_pred             EEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHhhhcC-CCCccEEEEEecCCCCChhhHHHH
Q 007718          365 IIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDT-SESIPLIFLITDGTVGDERGICNE  443 (591)
Q Consensus       365 Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~l~~aL~~a~~~l~~~-~~~~~~IillTDG~~~~~~~i~~~  443 (591)
                      |+.|++++..+.+.....+.++++.+.++|+++.++|||+++.||+.|++..... .+..+.|||||||.++++..+++.
T Consensus       311 ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~  390 (596)
T TIGR03788       311 IIQFDSDVTLLFPVPVPATAHNLARARQFVAGLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGNEDALFQL  390 (596)
T ss_pred             EEEECCcceEeccccccCCHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCCHHHHHHH
Confidence            9999999998888777889999999999999999999999999999999874322 345678999999998887777777


Q ss_pred             HHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccceEEeEEEEecCCCccee
Q 007718          444 IKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLE  523 (591)
Q Consensus       444 v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p~~~~v~l~~~~~~~~~~  523 (591)
                      ++...     .+.+||+||+|+++|..+|+.||+.|+|.|.++.+.+++..++.+++.++.+|+++|++++|.. ....+
T Consensus       391 ~~~~~-----~~~ri~tvGiG~~~n~~lL~~lA~~g~G~~~~i~~~~~~~~~~~~~l~~~~~p~l~~v~v~~~~-~~~~~  464 (596)
T TIGR03788       391 IRTKL-----GDSRLFTVGIGSAPNSYFMRKAAQFGRGSFTFIGSTDEVQRKMSQLFAKLEQPALTDIALTFDN-GNAAD  464 (596)
T ss_pred             HHHhc-----CCceEEEEEeCCCcCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHHHHhhcCeEEEEEEEEEcC-Cccce
Confidence            65432     2479999999999999999999999999999999999999999999999999999999999953 45679


Q ss_pred             eeCCCCCCcCCCCeEEEEEEEeCCCCceEEEEEEeCCcceEEEEEecccC-CCCChhHhHHHHHhhhh
Q 007718          524 LFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNA-KDIPLDRVMSQNLLLLV  590 (591)
Q Consensus       524 v~P~~i~~l~~g~~l~v~g~~~~~~~~~v~l~g~~~~~~~~~~~l~~~~~-~~~~l~~lwAr~~I~~L  590 (591)
                      ++|..+|+||.|++++|+||+ +..+++++++|..+++ .|+.++++... .+..|||||||++|++|
T Consensus       465 v~P~~~p~L~~g~~l~v~g~~-~~~~~~i~v~g~~~~~-~~~~~~~~~~~~~~~~l~~lwA~~~I~~L  530 (596)
T TIGR03788       465 VYPSPIPDLYRGEPLQIAIKL-QQAAGELQLTGRTGSQ-PWSQQLDLDSAAPGKGIDKLWARRKIDSL  530 (596)
T ss_pred             eccCCCccccCCCEEEEEEEe-cCCCCeEEEEEEcCCc-eEEEEEecCCCCCcchHHHHHHHHHHHHH
Confidence            999999999999999999997 4568999999999887 58999988753 45679999999999987

Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).

>PF13768 VWA_3: von Willebrand factor type A domain

Probab=99.94  E-value=1e-25  Score=209.09  Aligned_cols=153  Identities=39%  Similarity=0.547  Sum_probs=137.1

Q ss_pred             ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-CCCCc
Q 007718          326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GGGTN  404 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~GgT~  404 (591)
                      .+++||||+|+||.|.+ +.+|+++..++++|+++|+|||+.|++++..|.+...+++.++++++.+||+++.+ .|+|+
T Consensus         1 ~~vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d~fnii~f~~~~~~~~~~~~~~~~~~~~~a~~~I~~~~~~~G~t~   79 (155)
T PF13768_consen    1 ADVVILVDTSGSMSGEK-ELVKDALRAILRSLPPGDRFNIIAFGSSVRPLFPGLVPATEENRQEALQWIKSLEANSGGTD   79 (155)
T ss_pred             CeEEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCCEEEEEEeCCEeeEcchhHHHHhHHHHHHHHHHHHHhcccCCCcc
Confidence            37999999999999988 99999999999999999999999999999988888889999999999999999999 79999


Q ss_pred             hHHHHHHHHHhhhcCCCCccEEEEEecCCC-CChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEE
Q 007718          405 ILLPLKQAIKLLSDTSESIPLIFLITDGTV-GDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY  483 (591)
Q Consensus       405 l~~aL~~a~~~l~~~~~~~~~IillTDG~~-~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~  483 (591)
                      +..||+.|+..+ ..++..+.|+|+|||.+ +.+..+++.+++.     ..+++||+||+|..++..+|+.||+.++|.|
T Consensus        80 l~~aL~~a~~~~-~~~~~~~~IilltDG~~~~~~~~i~~~v~~~-----~~~~~i~~~~~g~~~~~~~L~~LA~~~~G~~  153 (155)
T PF13768_consen   80 LLAALRAALALL-QRPGCVRAIILLTDGQPVSGEEEILDLVRRA-----RGHIRIFTFGIGSDADADFLRELARATGGSF  153 (155)
T ss_pred             HHHHHHHHHHhc-ccCCCccEEEEEEeccCCCCHHHHHHHHHhc-----CCCceEEEEEECChhHHHHHHHHHHcCCCEE
Confidence            999999999876 33567889999999996 5555666666543     2459999999999999999999999999998


Q ss_pred             EE
Q 007718          484 DS  485 (591)
Q Consensus       484 ~~  485 (591)
                      .+
T Consensus       154 ~f  155 (155)
T PF13768_consen  154 HF  155 (155)
T ss_pred             EC
Confidence            74

>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin)

Probab=99.93  E-value=2e-24  Score=203.40  Aligned_cols=170  Identities=39%  Similarity=0.598  Sum_probs=148.7

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCC
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGT  403 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT  403 (591)
                      .|++++||||+||||.|.+++.+++++..++..++++++|+|+.|+++...+.+.....+..++.++.++++.+.++|+|
T Consensus         1 ~~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~T   80 (171)
T cd01461           1 LPKEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPSSVSATAENVAAAIEYVNRLQALGGT   80 (171)
T ss_pred             CCceEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeecCcceeCCHHHHHHHHHHHHhcCCCCCc
Confidence            37899999999999999999999999999999999999999999999988776555556778889999999999999999


Q ss_pred             chHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEE
Q 007718          404 NILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY  483 (591)
Q Consensus       404 ~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~  483 (591)
                      ++..+|..+++.+...++..+.||++|||..++...+.+.+++..    +.+++||+||+|...+..+|+.||+.++|.|
T Consensus        81 ~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~----~~~i~i~~i~~g~~~~~~~l~~ia~~~gG~~  156 (171)
T cd01461          81 NMNDALEAALELLNSSPGSVPQIILLTDGEVTNESQILKNVREAL----SGRIRLFTFGIGSDVNTYLLERLAREGRGIA  156 (171)
T ss_pred             CHHHHHHHHHHhhccCCCCccEEEEEeCCCCCCHHHHHHHHHHhc----CCCceEEEEEeCCccCHHHHHHHHHcCCCeE
Confidence            999999999999865456678999999999877666666665542    2368999999999999999999999999999


Q ss_pred             EEcCCCCchHHHHH
Q 007718          484 DSAYDPGSVDYRIR  497 (591)
Q Consensus       484 ~~v~~~~~l~~~~~  497 (591)
                      .++.+.+++.+++.
T Consensus       157 ~~~~~~~~~~~~~~  170 (171)
T cd01461         157 RRIYETDDIESQLL  170 (171)
T ss_pred             EEecChHHHHHHhc
Confidence            99999999887764

Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.

>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains

Probab=99.92  E-value=4.3e-24  Score=187.90  Aligned_cols=111  Identities=14%  Similarity=0.260  Sum_probs=99.8

Q ss_pred             cccccceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEehHhhhhhhh
Q 007718           81 LIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKEN  160 (591)
Q Consensus        81 ~~pL~~~~v~v~V~~~~~~a~v~~~q~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k~~a~~~~~  160 (591)
                      .+||++.+|+++|.+.  .|+|+++|+|.|   ++++++|+.|.||||++|+|++|+|+||||.|.|+|+||++|++.|+
T Consensus         2 ~~~l~s~~v~~~I~~~--~a~t~v~q~f~N---~~~~~~E~~y~fpLp~~A~i~~f~~~i~g~~i~g~v~ek~~A~~~y~   76 (118)
T PF08487_consen    2 QVPLKSVHVKVTIIDR--FARTTVTQTFEN---PSSEPLEAVYSFPLPEGAAISGFSMWIGGRTIEGEVKEKEEAKQEYE   76 (118)
T ss_pred             CceEEEEEEEEEEEcc--EEEEEEEEEEEC---CCCCcEEEEEEeECCCCeEEEEEEEEECCEEEEEEEecHHHHHHHHH
Confidence            4789999999999888  577999999999   68899999999999999999999999999999999999999998666


Q ss_pred             hcc-ccCCccce---ecCc--eEEEcCCCCCCCEEEEEEEEEE
Q 007718          161 VGK-SKGDGRYL---KGQI--YTLRIPQVDGGSTLSIKVNWSQ  197 (591)
Q Consensus       161 ~~~-~~~~~~ll---~~~~--F~~~v~~i~~g~~v~I~i~y~q  197 (591)
                      .++ ++.+++||   +++.  |+++| |||||++++|+|+|+|
T Consensus        77 ~a~~~g~~a~lle~~~~~~~~F~~~v-ni~p~~~v~i~l~Y~e  118 (118)
T PF08487_consen   77 EAVAQGKSAALLEQSDPNVEVFTVSV-NIPPNEEVTIELTYVE  118 (118)
T ss_pred             HHHHcCCCchhhcccCCCCcEEEEEE-EeCCCCEEEEEEEEEC
Confidence            655 45677787   5677  99999 9999999999999985

ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.

>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta

Probab=99.91  E-value=2.2e-23  Score=200.16  Aligned_cols=165  Identities=30%  Similarity=0.367  Sum_probs=136.8

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecC----cccCCHHHHHHHHHHHhcCC
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSS----MKLASQGTIINATQWLSSLV  398 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~----~~~~~~~~~~~a~~~i~~l~  398 (591)
                      ..|++++||||+||||.+.+++.+|+++..+++.|+++|+|+|+.|++++..+.+.    ....+..+.+.+.++|.++.
T Consensus        11 ~~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~   90 (190)
T cd01463          11 TSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCFNDTLVQATTSNKKVLKEALDMLE   90 (190)
T ss_pred             cCCceEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEEeeecccceEecCHHHHHHHHHHHhhCC
Confidence            46899999999999999999999999999999999999999999999998876543    12345678888999999999


Q ss_pred             CCCCCchHHHHHHHHHhhhcC---------CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC-C
Q 007718          399 AGGGTNILLPLKQAIKLLSDT---------SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC-N  468 (591)
Q Consensus       399 ~~GgT~l~~aL~~a~~~l~~~---------~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~-~  468 (591)
                      ++|+|++..||+.|++.+...         +...+.|||||||.+++...++......  ......++||+||+|.+. |
T Consensus        91 ~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~--~~~~~~v~i~tigiG~~~~d  168 (190)
T cd01463          91 AKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYKEIFDKYNWD--KNSEIPVRVFTYLIGREVTD  168 (190)
T ss_pred             CCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHhHHHHHhccc--ccCCCcEEEEEEecCCcccc
Confidence            999999999999999988651         1335689999999998765554433221  112346899999999986 8


Q ss_pred             HHHHHHHHHhCCCEEEEcCCC
Q 007718          469 HYFLQILAQIGRGYYDSAYDP  489 (591)
Q Consensus       469 ~~lL~~LA~~~~G~~~~v~~~  489 (591)
                      ..+|+.||..++|.|+++.+.
T Consensus       169 ~~~L~~lA~~~~G~~~~i~~~  189 (190)
T cd01463         169 RREIQWMACENKGYYSHIQSL  189 (190)
T ss_pred             chHHHHHHhhcCCeEEEcccC
Confidence            999999999999999998764

The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.

>smart00609 VIT Vault protein Inter-alpha-Trypsin domain

Probab=99.91  E-value=6.6e-24  Score=188.29  Aligned_cols=113  Identities=16%  Similarity=0.199  Sum_probs=101.5

Q ss_pred             CccccccceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEehHhhhhh
Q 007718           79 PALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYK  158 (591)
Q Consensus        79 ~~~~pL~~~~v~v~V~~~~~~a~v~~~q~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k~~a~~~  158 (591)
                      ...+||++.+|+++|.|.  +|+|+++|+|.|   +++...|+.|.||||++|+|++|+|+||||+|.|+|+||++|++.
T Consensus        12 ~~~~pL~s~~v~~~I~~~--~a~t~vtq~f~N---~~~~~~e~~~~~~lp~~A~v~~~~~~i~~r~i~g~vkeK~~Ar~~   86 (130)
T smart00609       12 VNGVPLYSLKVNSKVTSR--FAHTVVTSRVVN---RAVPAQEVTFDVELPKTAFISNFAMTIDGKTYVGEIKEKEVAQKQ   86 (130)
T ss_pred             CCccceEEEEEEEEEECC--EEEEEEEEEEEC---CCCCceEEEEEcCCCCCcEEEeEEEEECCEEEEEEEeeHHHHHHH
Confidence            457999999999999888  577999999999   568889999999999999999999999999999999999999986


Q ss_pred             hhhcc-ccCCccce---ec--CceEEEcCCCCCCCEEEEEEEEEE
Q 007718          159 ENVGK-SKGDGRYL---KG--QIYTLRIPQVDGGSTLSIKVNWSQ  197 (591)
Q Consensus       159 ~~~~~-~~~~~~ll---~~--~~F~~~v~~i~~g~~v~I~i~y~q  197 (591)
                      |+.++ ++++++|+   ++  |+|+++| |||||++++|+|+|.|
T Consensus        87 Ye~A~~~G~~a~L~eq~~~~~~~F~~~V-NIppg~~v~v~l~Y~e  130 (130)
T smart00609       87 YEKAVSQGKTAGLVRASGRSMEQFTVSV-NVAPGSKVTFELTYEE  130 (130)
T ss_pred             HHHHHHcCCCeEEEEecCCccCcEEEEE-EeCCCCEEEEEEEEEC
Confidence            66665 45677788   56  9999999 9999999999999985

>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.89  E-value=7e-22  Score=183.26  Aligned_cols=153  Identities=30%  Similarity=0.421  Sum_probs=128.0

Q ss_pred             ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCch
Q 007718          326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNI  405 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~l  405 (591)
                      .+++||||+||||.+.+++.+|+++..+++.|+++++++|+.|+++++.+.+. .+.+..+...+.++++.+.++|+|++
T Consensus         1 ~~v~~vlD~S~SM~~~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~g~T~~   79 (155)
T cd01466           1 VDLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSPL-RRMTAKGKRSAKRVVDGLQAGGGTNV   79 (155)
T ss_pred             CcEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcceEEEEEecCCccccCCC-cccCHHHHHHHHHHHHhccCCCCccH
Confidence            37899999999999999999999999999999999999999999998776553 34556677788888999999999999


Q ss_pred             HHHHHHHHHhhhcC--CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEE
Q 007718          406 LLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY  483 (591)
Q Consensus       406 ~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~  483 (591)
                      +.||+.+.+.+...  .+..+.|||+|||.++....   . ..    ....++.+|+||+|...+..+|+.||+.++|.|
T Consensus        80 ~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~~~---~-~~----~~~~~v~v~~igig~~~~~~~l~~iA~~t~G~~  151 (155)
T cd01466          80 VGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGAV---V-LR----ADNAPIPIHTFGLGASHDPALLAFIAEITGGTF  151 (155)
T ss_pred             HHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcchh---h-hc----ccCCCceEEEEecCCCCCHHHHHHHHhccCceE
Confidence            99999999998643  23456899999999876411   1 11    123469999999999999999999999999999


Q ss_pred             EEcC
Q 007718          484 DSAY  487 (591)
Q Consensus       484 ~~v~  487 (591)
                      +++.
T Consensus       152 ~~~~  155 (155)
T cd01466         152 SYVK  155 (155)
T ss_pred             EEeC
Confidence            9873

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,

>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.88  E-value=1.2e-21  Score=184.29  Aligned_cols=166  Identities=22%  Similarity=0.297  Sum_probs=133.2

Q ss_pred             eEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCchH
Q 007718          327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNIL  406 (591)
Q Consensus       327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~l~  406 (591)
                      +++||+|+||||.+.+++.+|+++..++..|+++++++++.|+++...+.+....   .+...+.+.++.+.++|+|++.
T Consensus         2 ~~~~vlD~S~SM~~~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~g~T~~~   78 (170)
T cd01465           2 NLVFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAETVLPATPV---RDKAAILAAIDRLTAGGSTAGG   78 (170)
T ss_pred             cEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccEEecCccc---chHHHHHHHHHcCCCCCCCCHH
Confidence            6899999999999989999999999999999999999999999998776543222   2335566778888899999999


Q ss_pred             HHHHHHHHhhhcCC--CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEE
Q 007718          407 LPLKQAIKLLSDTS--ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYD  484 (591)
Q Consensus       407 ~aL~~a~~~l~~~~--~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~  484 (591)
                      .+|+.|++.+....  +..+.|||+|||.++......+.+++.+......+++||+||+|.+.+..+|+.||+.++|.|+
T Consensus        79 ~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~~~~~~l~~ia~~~~g~~~  158 (170)
T cd01465          79 AGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDNYNEDLMEAIADAGNGNTA  158 (170)
T ss_pred             HHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCCcCHHHHHHHHhcCCceEE
Confidence            99999999886532  2336899999999875433333333333333345699999999999999999999999999999


Q ss_pred             EcCCCCchHHH
Q 007718          485 SAYDPGSVDYR  495 (591)
Q Consensus       485 ~v~~~~~l~~~  495 (591)
                      ++.+.+++++.
T Consensus       159 ~~~~~~~~~~~  169 (170)
T cd01465         159 YIDNLAEARKV  169 (170)
T ss_pred             EeCCHHHHHhh
Confidence            99988877643

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n

>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation

Probab=99.86  E-value=8.1e-21  Score=183.55  Aligned_cols=168  Identities=20%  Similarity=0.226  Sum_probs=127.1

Q ss_pred             eEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC-----
Q 007718          327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-----  398 (591)
Q Consensus       327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-----  398 (591)
                      +++||||+||||.+.+++.+|+++..+++.|+.   +++++|+.|++++..+.+.. .....+...+.+.|+++.     
T Consensus         2 di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~   80 (198)
T cd01470           2 NIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIR-DFNSNDADDVIKRLEDFNYDDHG   80 (198)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecc-cCCCCCHHHHHHHHHhCCccccc
Confidence            799999999999999999999999999999863   79999999999988765532 233344556677777665     


Q ss_pred             CCCCCchHHHHHHHHHhhhcC--------CCCccEEEEEecCCCCCh---hhHHHHHHHHHhcC------CCCCCeEEEE
Q 007718          399 AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVGDE---RGICNEIKSYLTNT------RSISPRICTF  461 (591)
Q Consensus       399 ~~GgT~l~~aL~~a~~~l~~~--------~~~~~~IillTDG~~~~~---~~i~~~v~~~~~~~------~~~~~ri~t~  461 (591)
                      .+|||+++.||+.+.+.+...        ....+.|||||||.++..   ....+.+++.+...      ...+++||+|
T Consensus        81 ~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~i  160 (198)
T cd01470          81 DKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYLDVYVF  160 (198)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhcceeEEEE
Confidence            348999999999998765311        123467999999998743   23344444443221      2346899999


Q ss_pred             EcCCCCCHHHHHHHHHhCCC--EEEEcCCCCchHHH
Q 007718          462 GVGLYCNHYFLQILAQIGRG--YYDSAYDPGSVDYR  495 (591)
Q Consensus       462 GiG~~~~~~lL~~LA~~~~G--~~~~v~~~~~l~~~  495 (591)
                      |+|++.|..+|+.||+.++|  +++.+.+.+++.+.
T Consensus       161 GvG~~~~~~~L~~iA~~~~g~~~~f~~~~~~~l~~v  196 (198)
T cd01470         161 GVGDDVNKEELNDLASKKDNERHFFKLKDYEDLQEV  196 (198)
T ss_pred             ecCcccCHHHHHHHhcCCCCCceEEEeCCHHHHHHh
Confidence            99999999999999999999  46777776666543

They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.

>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.86  E-value=1.8e-20  Score=182.28  Aligned_cols=165  Identities=19%  Similarity=0.254  Sum_probs=127.7

Q ss_pred             CccCceEEEEEeCCcCCC------cchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceE------eee---cCcccC---C
Q 007718          322 KVFRKDVVFLVDVSGSMQ------GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETH------LFS---SSMKLA---S  383 (591)
Q Consensus       322 ~~~~~~ivfviD~SgSM~------g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~------~~~---~~~~~~---~  383 (591)
                      ...+.+++||||+||||.      +.+|+.+|+++..+++.++++++|+|+.|+++..      ...   +.....   .
T Consensus        17 ~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~~   96 (206)
T cd01456          17 PQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFP   96 (206)
T ss_pred             cCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccccccccccCCCC
Confidence            346789999999999998      5799999999999999999999999999999532      111   111111   1


Q ss_pred             HHHHHHHHHHHhcCC-CCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcC-CCCCCeEEEE
Q 007718          384 QGTIINATQWLSSLV-AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNT-RSISPRICTF  461 (591)
Q Consensus       384 ~~~~~~a~~~i~~l~-~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~-~~~~~ri~t~  461 (591)
                      ..+.+.+.+.|+++. +.|+|++..+|+.|.+.+.  .+..+.|||+|||..++....++.+++..... ...+++||+|
T Consensus        97 ~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i~~i  174 (206)
T cd01456          97 SAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKVNVI  174 (206)
T ss_pred             cccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceEEEE
Confidence            135667777888888 8899999999999999885  34458999999999876544444444443321 1246999999


Q ss_pred             EcCCCCCHHHHHHHHHhCCCEE-EEcCC
Q 007718          462 GVGLYCNHYFLQILAQIGRGYY-DSAYD  488 (591)
Q Consensus       462 GiG~~~~~~lL~~LA~~~~G~~-~~v~~  488 (591)
                      |+|.+.+..+|+.||..++|.| +.+.+
T Consensus       175 giG~~~~~~~l~~iA~~tgG~~~~~~~~  202 (206)
T cd01456         175 DFGGDADRAELEAIAEATGGTYAYNQSD  202 (206)
T ss_pred             EecCcccHHHHHHHHHhcCCeEeccccc
Confidence            9999999999999999999999 55444

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if

>PRK13685 hypothetical protein; Provisional

Probab=99.81  E-value=2.3e-18  Score=178.79  Aligned_cols=170  Identities=19%  Similarity=0.204  Sum_probs=132.1

Q ss_pred             cCceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718          324 FRKDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV  398 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g-----~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~  398 (591)
                      .+.+++|++|+|+||.+     ++++.+|+++..+++.++++|+++++.|++++....+..     .+.+.....|+++.
T Consensus        87 ~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~~~p~t-----~d~~~l~~~l~~l~  161 (326)
T PRK13685         87 NRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATVLVSPT-----TNREATKNAIDKLQ  161 (326)
T ss_pred             CCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceeecCCCC-----CCHHHHHHHHHhCC
Confidence            45689999999999986     589999999999999999899999999999988765432     24445566678888


Q ss_pred             CCCCCchHHHHHHHHHhhhcC--------CCCccEEEEEecCCCCChh------hHHHHHHHHHhcCCCCCCeEEEEEcC
Q 007718          399 AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVGDER------GICNEIKSYLTNTRSISPRICTFGVG  464 (591)
Q Consensus       399 ~~GgT~l~~aL~~a~~~l~~~--------~~~~~~IillTDG~~~~~~------~i~~~v~~~~~~~~~~~~ri~t~GiG  464 (591)
                      ++|+|+++.++..|++.+...        ....+.||++|||..+.+.      ...+..+ .+.   +.+++||+||+|
T Consensus       162 ~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~-~a~---~~gi~i~~Ig~G  237 (326)
T PRK13685        162 LADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAAR-TAK---DQGVPISTISFG  237 (326)
T ss_pred             CCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHH-HHH---HcCCeEEEEEEC
Confidence            999999999999999887521        2234689999999976432      1112222 222   246999999999


Q ss_pred             CC--------------CCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHH
Q 007718          465 LY--------------CNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTA  502 (591)
Q Consensus       465 ~~--------------~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~  502 (591)
                      ..              .|...|+.||+.|||.|+.+.+.+++++.+.++-+.
T Consensus       238 ~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~~~~~~L~~if~~I~~~  289 (326)
T PRK13685        238 TPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTAASLEELRAVYATLQQQ  289 (326)
T ss_pred             CCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEcCCHHHHHHHHHHHHHH
Confidence            74              478899999999999999998887777666665444

>TIGR00868 hCaCC calcium-activated chloride channel protein 1

Probab=99.80  E-value=2e-18  Score=194.20  Aligned_cols=161  Identities=22%  Similarity=0.225  Sum_probs=124.0

Q ss_pred             CccCceEEEEEeCCcCCCc-chHHHHHHHHHHHH-HhcCCCCeEEEEEeCCceEeeecCcccCCH-HHHHHHHHHHhcCC
Q 007718          322 KVFRKDVVFLVDVSGSMQG-VLLEQTKNALSASL-SKLNPQDSFNIIAFNGETHLFSSSMKLASQ-GTIINATQWLSSLV  398 (591)
Q Consensus       322 ~~~~~~ivfviD~SgSM~g-~~i~~ak~al~~~l-~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~-~~~~~a~~~i~~l~  398 (591)
                      +..++.++||||+||||.+ .+++.+|+|+..++ +.++++|+++|+.|++.+....+. .+.+. ...+.....+ .+.
T Consensus       301 q~~~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFsssA~vl~pL-t~Its~~dr~aL~~~L-~~~  378 (863)
T TIGR00868       301 KIRQRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDSAAYIKNEL-IQITSSAERDALTANL-PTA  378 (863)
T ss_pred             ccCCceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECCceeEeecc-ccCCcHHHHHHHHHhh-ccc
Confidence            4456789999999999986 58999999998876 457889999999999998876553 33333 3444444444 356


Q ss_pred             CCCCCchHHHHHHHHHhhhcCC--CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 007718          399 AGGGTNILLPLKQAIKLLSDTS--ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA  476 (591)
Q Consensus       399 ~~GgT~l~~aL~~a~~~l~~~~--~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA  476 (591)
                      ++|||+|+.||+.|++.+.+..  ...+.|||||||+.+........++       ..+++||+||+|.+.+. .|+.||
T Consensus       379 A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~~~~~l~~lk-------~~gVtI~TIg~G~dad~-~L~~IA  450 (863)
T TIGR00868       379 ASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNTISSCFEEVK-------QSGAIIHTIALGPSAAK-ELEELS  450 (863)
T ss_pred             cCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCCHHHHHHHHH-------HcCCEEEEEEeCCChHH-HHHHHH
Confidence            8899999999999999987643  2457999999999876544333322       23599999999998765 489999


Q ss_pred             HhCCCEEEEcCCCCch
Q 007718          477 QIGRGYYDSAYDPGSV  492 (591)
Q Consensus       477 ~~~~G~~~~v~~~~~l  492 (591)
                      +.+||.++++.+.+++
T Consensus       451 ~~TGG~~f~asd~~dl  466 (863)
T TIGR00868       451 DMTGGLRFYASDQADN  466 (863)
T ss_pred             HhcCCEEEEeCCHHHH
Confidence            9999999999876554

distributions. found a row in 1A13.INFO that was not parsed out

>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto)

Probab=99.79  E-value=2.9e-18  Score=162.83  Aligned_cols=156  Identities=25%  Similarity=0.289  Sum_probs=117.9

Q ss_pred             EEEEEeCCcCCCcc-hHHHHHHHHHHHHHh-cCCCCeEEEEEeCCc-eEeeecCcccCCHHHHHHHHHHHhcCCCCCCCc
Q 007718          328 VVFLVDVSGSMQGV-LLEQTKNALSASLSK-LNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVAGGGTN  404 (591)
Q Consensus       328 ivfviD~SgSM~g~-~i~~ak~al~~~l~~-L~~~d~f~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~  404 (591)
                      ++|+||+||||.+. +++.+|+++..++.. +.++|+++|+.|+++ .....+..     .+...+.+.++.+..+|+|+
T Consensus         3 v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t-----~~~~~~~~~l~~l~~~G~T~   77 (178)
T cd01451           3 VIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPT-----RSVELAKRRLARLPTGGGTP   77 (178)
T ss_pred             EEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCC-----CCHHHHHHHHHhCCCCCCCc
Confidence            78999999999976 999999999998864 577999999999875 45433321     23445567788888899999


Q ss_pred             hHHHHHHHHHhh-hcC--CCCccEEEEEecCCCCChhh----HHHHHHHHHhcCCCCCCeEEEEEcCCC-CCHHHHHHHH
Q 007718          405 ILLPLKQAIKLL-SDT--SESIPLIFLITDGTVGDERG----ICNEIKSYLTNTRSISPRICTFGVGLY-CNHYFLQILA  476 (591)
Q Consensus       405 l~~aL~~a~~~l-~~~--~~~~~~IillTDG~~~~~~~----i~~~v~~~~~~~~~~~~ri~t~GiG~~-~~~~lL~~LA  476 (591)
                      +..+|..+++.+ ...  .+..+.|||+|||..+....    ....+.+.+.   ..++.+++||+|.+ .+..+|+.||
T Consensus        78 l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~---~~gi~v~~I~~~~~~~~~~~l~~iA  154 (178)
T cd01451          78 LAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLR---ARGISALVIDTEGRPVRRGLAKDLA  154 (178)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHH---hcCCcEEEEeCCCCccCccHHHHHH
Confidence            999999999987 211  23357999999999874321    1122222222   34588999999864 5788999999


Q ss_pred             HhCCCEEEEcCCCCc
Q 007718          477 QIGRGYYDSAYDPGS  491 (591)
Q Consensus       477 ~~~~G~~~~v~~~~~  491 (591)
                      +.+||.|+++.+.+.
T Consensus       155 ~~tgG~~~~~~d~~~  169 (178)
T cd01451         155 RALGGQYVRLPDLSA  169 (178)
T ss_pred             HHcCCeEEEcCcCCH
Confidence            999999999988753

In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.

>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions

Probab=99.79  E-value=1.2e-18  Score=166.60  Aligned_cols=158  Identities=19%  Similarity=0.197  Sum_probs=120.2

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---------CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHH
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---------NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWL  394 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---------~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i  394 (591)
                      +|.|++||||+|+||.+.+++.+|++++.+++.|         +.+++++|+.|++++....+....  ..+...+.+.|
T Consensus         1 c~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~~l~~~--~~~~~~l~~~i   78 (186)
T cd01480           1 GPVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRD--IRNYTSLKEAV   78 (186)
T ss_pred             CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeEecccc--cCCHHHHHHHH
Confidence            4789999999999999999999999999999888         346899999999998766543211  23445556667


Q ss_pred             hcCCC-CCCCchHHHHHHHHHhhhc--CCCCccEEEEEecCCCCCh--hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCH
Q 007718          395 SSLVA-GGGTNILLPLKQAIKLLSD--TSESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSISPRICTFGVGLYCNH  469 (591)
Q Consensus       395 ~~l~~-~GgT~l~~aL~~a~~~l~~--~~~~~~~IillTDG~~~~~--~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~  469 (591)
                      ++++. +|+|+++.||+.|.+.+..  .++..+.|||+|||..+..  ....+.++.. .   ..++.||++|+|. .|.
T Consensus        79 ~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~-~---~~gi~i~~vgig~-~~~  153 (186)
T cd01480          79 DNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEA-D---HLGIKIFFVAVGS-QNE  153 (186)
T ss_pred             HhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHH-H---HCCCEEEEEecCc-cch
Confidence            77764 7999999999999998864  3466789999999997532  2222222222 2   3469999999999 788


Q ss_pred             HHHHHHHHhCCCEEEEcCCC
Q 007718          470 YFLQILAQIGRGYYDSAYDP  489 (591)
Q Consensus       470 ~lL~~LA~~~~G~~~~v~~~  489 (591)
                      ..|+.||..+++.|+ ..+.
T Consensus       154 ~~L~~IA~~~~~~~~-~~~~  172 (186)
T cd01480         154 EPLSRIACDGKSALY-RENF  172 (186)
T ss_pred             HHHHHHHcCCcchhh-hcch
Confidence            899999999988744 3443

The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.

>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.79  E-value=1.1e-17  Score=159.11  Aligned_cols=161  Identities=25%  Similarity=0.254  Sum_probs=122.9

Q ss_pred             CceEEEEEeCCcCCCc------chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718          325 RKDVVFLVDVSGSMQG------VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV  398 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g------~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~  398 (591)
                      ..+++|++|+|+||..      .+++.+|.++..++... ++++++++.|+++.....+..  .+...+.++++.+....
T Consensus         2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~~~~--~~~~~~~~~l~~l~~~~   78 (180)
T cd01467           2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRR-ENDRIGLVVFAGAAFTQAPLT--LDRESLKELLEDIKIGL   78 (180)
T ss_pred             CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEEcCCeeeccCCC--ccHHHHHHHHHHhhhcc
Confidence            4689999999999974      36889999998888764 589999999999887654422  34455555655555445


Q ss_pred             CCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCC-----------CC
Q 007718          399 AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGL-----------YC  467 (591)
Q Consensus       399 ~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~-----------~~  467 (591)
                      .+|+|++..+|..+++++.......+.|||+|||..+........+.+.+.   ..+++||+||+|.           ..
T Consensus        79 ~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~~~~~~---~~gi~i~~i~ig~~~~~~~~~~~~~~  155 (180)
T cd01467          79 AGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAK---NKGVRIYTIGVGKSGSGPKPDGSTIL  155 (180)
T ss_pred             cCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHHHHHHH---HCCCEEEEEEecCCCCCcCCCCcccC
Confidence            679999999999999998765555689999999997654322222222222   2358999999998           47


Q ss_pred             CHHHHHHHHHhCCCEEEEcCCCCc
Q 007718          468 NHYFLQILAQIGRGYYDSAYDPGS  491 (591)
Q Consensus       468 ~~~lL~~LA~~~~G~~~~v~~~~~  491 (591)
                      +...|+.||+.++|.|+++.+.++
T Consensus       156 ~~~~l~~la~~tgG~~~~~~~~~~  179 (180)
T cd01467         156 DEDSLVEIADKTGGRIFRALDGFE  179 (180)
T ss_pred             CHHHHHHHHHhcCCEEEEecCccc
Confidence            888999999999999999987764

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if

>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein

Probab=99.78  E-value=1.2e-17  Score=173.40  Aligned_cols=102  Identities=13%  Similarity=0.084  Sum_probs=90.9

Q ss_pred             ccccccceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEE---EEEehHhhh
Q 007718           80 ALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQS---KLISLDDAE  156 (591)
Q Consensus        80 ~~~pL~~~~v~v~V~~~~~~a~v~~~q~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~---~v~~k~~a~  156 (591)
                      ..+-|.++.|+|+|.|.  .|+|+++|+|+|   ++++.+|+.|.||||++|+|++|+|.++|++..+   +++||++||
T Consensus       412 kaV~L~Sh~VtVeIeg~--iA~TEIEqTF~N---PN~r~LEGElsFPLPEgAtVTGyALdvdGkL~Daw~~VVVEKEKAR  486 (952)
T TIGR02921       412 KKVLIANMAITVEEHGD--NADIEIVETLEN---QTPENHEVFFHFSLPEEAAITGLWLGDDAKDDDKFAFALAPRGAAQ  486 (952)
T ss_pred             CceeEeeeeEEEEEECC--eEEEEEEEEEEC---CCCCceeEEEEecCCCCCeeeeeeecCCccccccccceeccHHHHH
Confidence            34667888888888887  567999999999   7999999999999999999999999999999988   999999999


Q ss_pred             h-hhhhcccc--CCccce---ecCceEEEcCCCCCC
Q 007718          157 Y-KENVGKSK--GDGRYL---KGQIYTLRIPQVDGG  186 (591)
Q Consensus       157 ~-~~~~~~~~--~~~~ll---~~~~F~~~v~~i~~g  186 (591)
                      + ||++.+++  .|+||+   .+|.|++||+||||.
T Consensus       487 QVYEdevRQGrpiDPALLEK~~gN~FriRVYPIPPr  522 (952)
T TIGR02921       487 KVYNDEVQQERPIDPALLEQVGPRHYRLRAFPIPPR  522 (952)
T ss_pred             HHHHHHHHhcCCCCchhheeccCCeeeEEEccCCcc
Confidence            6 66666666  599998   589999999999994

Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).

>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.78  E-value=3.5e-18  Score=161.96  Aligned_cols=141  Identities=26%  Similarity=0.359  Sum_probs=108.7

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC------CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP------QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV  398 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~------~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~  398 (591)
                      ..+++||||+||||.+.+++.+|+++..+++.|.+      +++++|+.|+++++...+... .  .+     ..+..+.
T Consensus         3 ~~~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~~l~~-~--~~-----~~~~~l~   74 (176)
T cd01464           3 RLPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTP-L--ES-----FQPPRLT   74 (176)
T ss_pred             CCCEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEecCCcc-H--Hh-----cCCCccc
Confidence            35689999999999999999999999999998863      569999999999887655321 1  11     1244678


Q ss_pred             CCCCCchHHHHHHHHHhhhcC---------CCCccEEEEEecCCCCChhhHH-HHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007718          399 AGGGTNILLPLKQAIKLLSDT---------SESIPLIFLITDGTVGDERGIC-NEIKSYLTNTRSISPRICTFGVGLYCN  468 (591)
Q Consensus       399 ~~GgT~l~~aL~~a~~~l~~~---------~~~~~~IillTDG~~~~~~~i~-~~v~~~~~~~~~~~~ri~t~GiG~~~~  468 (591)
                      ++|||+++.||+.|++.+...         ....+.|||+|||++++..... +.+++.    ...+++|++||+|.++|
T Consensus        75 ~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~----~~~~~~i~~igiG~~~~  150 (176)
T cd01464          75 ASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERIKEA----RDSKGRIVACAVGPKAD  150 (176)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHHHhh----cccCCcEEEEEeccccC
Confidence            889999999999999988542         1224589999999987653322 333332    23368999999999999


Q ss_pred             HHHHHHHHH
Q 007718          469 HYFLQILAQ  477 (591)
Q Consensus       469 ~~lL~~LA~  477 (591)
                      ..+|+.||.
T Consensus       151 ~~~L~~ia~  159 (176)
T cd01464         151 LDTLKQITE  159 (176)
T ss_pred             HHHHHHHHC
Confidence            999999986

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if

>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins

Probab=99.77  E-value=1.5e-17  Score=155.71  Aligned_cols=152  Identities=20%  Similarity=0.182  Sum_probs=118.2

Q ss_pred             ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-CC
Q 007718          326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GG  401 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~G  401 (591)
                      .|++||+|.||||.+.+++.+|+++..++..|.   .+++++|+.|++++....+.....+   ...+.+.++.+.. +|
T Consensus         1 ~Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~~~~~~~~---~~~~~~~l~~l~~~~g   77 (164)
T cd01472           1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRS---KDDVLEAVKNLRYIGG   77 (164)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEEecCCCCC---HHHHHHHHHhCcCCCC
Confidence            479999999999999899999999999999885   4679999999999887655432233   4445555666776 58


Q ss_pred             CCchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 007718          402 GTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA  476 (591)
Q Consensus       402 gT~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA  476 (591)
                      +|+++.||..|.+.+..     .++..+.|||+|||..++...  ...... .   ..++++|+||+|.. +...|+.||
T Consensus        78 ~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~~~--~~~~~l-~---~~gv~i~~ig~g~~-~~~~L~~ia  150 (164)
T cd01472          78 GTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDVE--EPAVEL-K---QAGIEVFAVGVKNA-DEEELKQIA  150 (164)
T ss_pred             CchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCchHH--HHHHHH-H---HCCCEEEEEECCcC-CHHHHHHHH
Confidence            89999999999998875     235567899999998765322  222222 2   13589999999987 999999999


Q ss_pred             HhCCCEEEEcC
Q 007718          477 QIGRGYYDSAY  487 (591)
Q Consensus       477 ~~~~G~~~~v~  487 (591)
                      ..++|.|.+..
T Consensus       151 ~~~~~~~~~~~  161 (164)
T cd01472         151 SDPKELYVFNV  161 (164)
T ss_pred             CCCchheEEec
Confidence            99999877643

This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.

>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax

Probab=99.77  E-value=1.9e-17  Score=158.26  Aligned_cols=173  Identities=18%  Similarity=0.179  Sum_probs=121.3

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc-CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCC
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG  402 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L-~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~Gg  402 (591)
                      .+.|++||||+||||.+. +...+++++.+++.+ .+++||+|+.|++++....+...  ..+.+.++++.+..+.++|+
T Consensus         3 ~~~Dvv~llD~SgSm~~~-~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~~~~~l~~--~~~~~~~~l~~l~~~~~~g~   79 (185)
T cd01474           3 GHFDLYFVLDKSGSVAAN-WIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTD--DSSAIIKGLEVLKKVTPSGQ   79 (185)
T ss_pred             CceeEEEEEeCcCchhhh-HHHHHHHHHHHHHHcCCCCcEEEEEEecCCceEEEeccc--cHHHHHHHHHHHhccCCCCC
Confidence            357999999999999874 444556677776664 46799999999999887766432  22345566666777778899


Q ss_pred             CchHHHHHHHHHhhhcC-C---CCccEEEEEecCCCCC--hhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 007718          403 TNILLPLKQAIKLLSDT-S---ESIPLIFLITDGTVGD--ERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA  476 (591)
Q Consensus       403 T~l~~aL~~a~~~l~~~-~---~~~~~IillTDG~~~~--~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA  476 (591)
                      |+++.||+.|.+.+... .   ...+.|||+|||..++  ........+.. .   ..++.||+||+| +.+...|+.||
T Consensus        80 T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~~~~~a~~l-~---~~gv~i~~vgv~-~~~~~~L~~iA  154 (185)
T cd01474          80 TYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKLS-R---KLGAIVYCVGVT-DFLKSQLINIA  154 (185)
T ss_pred             CcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcchHHHHHHH-H---HcCCEEEEEeec-hhhHHHHHHHh
Confidence            99999999999877421 1   1236899999999843  22232332222 2   235899999995 46889999999


Q ss_pred             HhCCCEEEEcCCCCchHHHHHHHHHHhc
Q 007718          477 QIGRGYYDSAYDPGSVDYRIRRFFTAAS  504 (591)
Q Consensus       477 ~~~~G~~~~v~~~~~l~~~~~~~~~~~~  504 (591)
                      ..+++.|....+.+.+...+..+.++++
T Consensus       155 ~~~~~~f~~~~~~~~l~~~~~~~~~~~C  182 (185)
T cd01474         155 DSKEYVFPVTSGFQALSGIIESVVKKAC  182 (185)
T ss_pred             CCCCeeEecCccHHHHHHHHHHHHHhhc
Confidence            9775444344556667766666666554

ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.

>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme

Probab=99.77  E-value=1.7e-17  Score=157.84  Aligned_cols=161  Identities=17%  Similarity=0.252  Sum_probs=120.6

Q ss_pred             ceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHhc---CCCCeEEEEEe-CCceEeeecCcccCCHHHHHHHHHHHhc
Q 007718          326 KDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKL---NPQDSFNIIAF-NGETHLFSSSMKLASQGTIINATQWLSS  396 (591)
Q Consensus       326 ~~ivfviD~SgSM~g-----~~i~~ak~al~~~l~~L---~~~d~f~Ii~F-~~~~~~~~~~~~~~~~~~~~~a~~~i~~  396 (591)
                      ++++|++|.|+||..     ++++.+|+++..+++.+   +++++++++.| ++.++...|..  .+.+.+   ...++.
T Consensus         4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT--~D~~~~---~~~L~~   78 (183)
T cd01453           4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLT--GNPRKH---IQALKT   78 (183)
T ss_pred             eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCC--CCHHHH---HHHhhc
Confidence            689999999999985     69999999999999864   67899999999 78888876653  333333   344443


Q ss_pred             C-CCCCCCchHHHHHHHHHhhhcCCC--CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718          397 L-VAGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ  473 (591)
Q Consensus       397 l-~~~GgT~l~~aL~~a~~~l~~~~~--~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~  473 (591)
                      + ...|||++..||+.|++.+...+.  ..+.|||+|||...+...+.+.. +.+.+   .+++|+++|+|.+  ..+|+
T Consensus        79 ~~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~~~-~~l~~---~~I~v~~IgiG~~--~~~L~  152 (183)
T cd01453          79 ARECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYETI-DKLKK---ENIRVSVIGLSAE--MHICK  152 (183)
T ss_pred             ccCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHHHH-HHHHH---cCcEEEEEEechH--HHHHH
Confidence            3 556889999999999999965322  24578889998865554443332 22222   3599999999964  56899


Q ss_pred             HHHHhCCCEEEEcCCCCchHHHHH
Q 007718          474 ILAQIGRGYYDSAYDPGSVDYRIR  497 (591)
Q Consensus       474 ~LA~~~~G~~~~v~~~~~l~~~~~  497 (591)
                      .||+.+||.|+.+.+.+++.+.+.
T Consensus       153 ~ia~~tgG~~~~~~~~~~l~~~~~  176 (183)
T cd01453         153 EICKATNGTYKVILDETHLKELLL  176 (183)
T ss_pred             HHHHHhCCeeEeeCCHHHHHHHHH
Confidence            999999999999988765554333

Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.

>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A

Probab=99.76  E-value=1.4e-17  Score=156.12  Aligned_cols=163  Identities=33%  Similarity=0.466  Sum_probs=122.4

Q ss_pred             eEEEEEeCCcCCCcc-----hHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHh-cCCCC
Q 007718          327 DVVFLVDVSGSMQGV-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAG  400 (591)
Q Consensus       327 ~ivfviD~SgSM~g~-----~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~-~l~~~  400 (591)
                      |++||+|.||||.+.     +++.+|+++..+++.++ +++|+|+.|++......+.  ..+.+.+.++++.+. .....
T Consensus         1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~f~~~~~~~~~~--t~~~~~~~~~l~~~~~~~~~~   77 (172)
T PF13519_consen    1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLP-GDRVGLVSFSDSSRTLSPL--TSDKDELKNALNKLSPQGMPG   77 (172)
T ss_dssp             EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHT-TSEEEEEEESTSCEEEEEE--ESSHHHHHHHHHTHHHHG--S
T ss_pred             CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCC-CCEEEEEEecccccccccc--cccHHHHHHHhhcccccccCc
Confidence            689999999999976     69999999999999986 7899999999987765542  356777777766665 35567


Q ss_pred             CCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC-HHHHHHHHHhC
Q 007718          401 GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN-HYFLQILAQIG  479 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~-~~lL~~LA~~~  479 (591)
                      |+|++..||..|.+.+...+...+.||++|||.++.  ..++.++.. .   ..+++||+|++|...+ ...|+.||+.+
T Consensus        78 ~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~--~~~~~~~~~-~---~~~i~i~~v~~~~~~~~~~~l~~la~~t  151 (172)
T PF13519_consen   78 GGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS--SDIEAAKAL-K---QQGITIYTVGIGSDSDANEFLQRLAEAT  151 (172)
T ss_dssp             SS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--HHHHHHHHH-H---CTTEEEEEEEES-TT-EHHHHHHHHHHT
T ss_pred             cCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--chhHHHHHH-H---HcCCeEEEEEECCCccHHHHHHHHHHhc
Confidence            999999999999999987555678999999998763  223333333 2   3459999999998766 48999999999


Q ss_pred             CCEEEEc-CCCCchHHHHHH
Q 007718          480 RGYYDSA-YDPGSVDYRIRR  498 (591)
Q Consensus       480 ~G~~~~v-~~~~~l~~~~~~  498 (591)
                      +|.|+.+ .+.+++.+.+.+
T Consensus       152 gG~~~~~~~~~~~l~~~~~~  171 (172)
T PF13519_consen  152 GGRYFHVDNDPEDLDDAFQQ  171 (172)
T ss_dssp             EEEEEEE-SSSHHHHHHHHH
T ss_pred             CCEEEEecCCHHHHHHHHhc
Confidence            9999998 567767665554

>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell

Probab=99.74  E-value=6e-17  Score=154.86  Aligned_cols=149  Identities=23%  Similarity=0.230  Sum_probs=113.9

Q ss_pred             eEEEEEeCCcCCCcch-HHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCccc--CCHHHHHHHHHHHhc-CCC
Q 007718          327 DVVFLVDVSGSMQGVL-LEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKL--ASQGTIINATQWLSS-LVA  399 (591)
Q Consensus       327 ~ivfviD~SgSM~g~~-i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~~-l~~  399 (591)
                      |++||+|+||||.+.. ++.+|+++..+++.+.   ++.+++|+.|++.+....+....  .+.+....+++.+.. ..+
T Consensus         2 Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~   81 (186)
T cd01471           2 DLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNSTNKDLALNAIRALLSLYYP   81 (186)
T ss_pred             cEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCccccchHHHHHHHHHHHhCcCC
Confidence            7999999999999887 9999999999999885   46799999999998865543221  123333334444443 346


Q ss_pred             CCCCchHHHHHHHHHhhhcC----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHH
Q 007718          400 GGGTNILLPLKQAIKLLSDT----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQIL  475 (591)
Q Consensus       400 ~GgT~l~~aL~~a~~~l~~~----~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~L  475 (591)
                      +|+|++..||+.|.+.+...    ++..+.|||+|||.+++.....+..++..    ..++.+++||+|.+.|..+|+.|
T Consensus        82 ~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~a~~l~----~~gv~v~~igiG~~~d~~~l~~i  157 (186)
T cd01471          82 NGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFRTLKEARKLR----ERGVIIAVLGVGQGVNHEENRSL  157 (186)
T ss_pred             CCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcchhHHHHHHH----HCCCEEEEEEeehhhCHHHHHHh
Confidence            79999999999999988652    34557899999999876655554444332    23589999999999999999999


Q ss_pred             HHhC
Q 007718          476 AQIG  479 (591)
Q Consensus       476 A~~~  479 (591)
                      |...
T Consensus       158 a~~~  161 (186)
T cd01471         158 VGCD  161 (186)
T ss_pred             cCCC
Confidence            9876

In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.

>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain

Probab=99.74  E-value=1.1e-16  Score=164.40  Aligned_cols=173  Identities=20%  Similarity=0.217  Sum_probs=130.0

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHh-cCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC---
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA---  399 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~-L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~---  399 (591)
                      .|.+++||||+||||.+ ++..+++++..+++. ++++|+++|+.|+++.....+..  .+.+.+.   +.|+.+.+   
T Consensus        52 ~p~~vvlvlD~SgSM~~-~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~~~~~t--~~~~~l~---~~l~~l~~~~~  125 (296)
T TIGR03436        52 LPLTVGLVIDTSGSMRN-DLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRLLQDFT--SDPRLLE---AALNRLKPPLR  125 (296)
T ss_pred             CCceEEEEEECCCCchH-HHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeEeecCC--CCHHHHH---HHHHhccCCCc
Confidence            47899999999999986 799999999999987 78899999999999987765432  3344444   44555555   


Q ss_pred             ------------CCCCchHHHHHHHH-HhhhcCC---CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEc
Q 007718          400 ------------GGGTNILLPLKQAI-KLLSDTS---ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGV  463 (591)
Q Consensus       400 ------------~GgT~l~~aL~~a~-~~l~~~~---~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~Gi  463 (591)
                                  +|+|+++.||..+. +++....   ...+.||++|||..+........+.+.+.   ..++.||+||+
T Consensus       126 ~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~---~~~v~vy~I~~  202 (296)
T TIGR03436       126 TDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDTLERAIDAAQ---RADVAIYSIDA  202 (296)
T ss_pred             cccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHHHHHHHHHHH---HcCCEEEEecc
Confidence                        79999999986664 4443322   13578999999998655433333333332   24599999999


Q ss_pred             CCC-------------CCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccc
Q 007718          464 GLY-------------CNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSV  506 (591)
Q Consensus       464 G~~-------------~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p  506 (591)
                      |..             .+...|+.||..|||.++++ +.+++...+.++...+.+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~-~~~~l~~~f~~i~~~~~~~  257 (296)
T TIGR03436       203 RGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYV-NSNDLDGAFAQIAEELRSQ  257 (296)
T ss_pred             CccccCCcccccccCCCcHHHHHHHHHHhCCeEecc-cCccHHHHHHHHHHHHhhe
Confidence            842             35789999999999999888 8888998888888776653

Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=99.73  E-value=1e-16  Score=157.89  Aligned_cols=170  Identities=17%  Similarity=0.181  Sum_probs=125.1

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-C
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-G  400 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~  400 (591)
                      |.|++||||.|+||.+.+++++|+++..+++.|.   ..+||+|+.|+++++..++.....+.+.+..++   +++.. +
T Consensus         2 ~~DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~~l~~~~~~~~l~~~i---~~i~~~~   78 (224)
T cd01475           2 PTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAV---RRMEYLE   78 (224)
T ss_pred             CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEecccccCCHHHHHHHH---HhCcCCC
Confidence            5799999999999999999999999999999885   367999999999998776654444555566654   44554 4


Q ss_pred             CCCchHHHHHHHHHhhhc-----CCCC---ccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHH
Q 007718          401 GGTNILLPLKQAIKLLSD-----TSES---IPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFL  472 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~-----~~~~---~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL  472 (591)
                      |+|+++.||+.+++.+..     +++.   .+.+||+|||..++.  +.+.++.. .   ..+++||+||+|.. +...|
T Consensus        79 ~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~--~~~~a~~l-k---~~gv~i~~VgvG~~-~~~~L  151 (224)
T cd01475          79 TGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDD--VSEVAAKA-R---ALGIEMFAVGVGRA-DEEEL  151 (224)
T ss_pred             CCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCccc--HHHHHHHH-H---HCCcEEEEEeCCcC-CHHHH
Confidence            889999999999876432     1222   578999999997653  22222222 2   23599999999984 88899


Q ss_pred             HHHHHhCCC-EEEEcCCCCchHHHHHHHHHHhc
Q 007718          473 QILAQIGRG-YYDSAYDPGSVDYRIRRFFTAAS  504 (591)
Q Consensus       473 ~~LA~~~~G-~~~~v~~~~~l~~~~~~~~~~~~  504 (591)
                      +.||..+++ +++.+.+.++++....++...+.
T Consensus       152 ~~ias~~~~~~~f~~~~~~~l~~~~~~l~~~~C  184 (224)
T cd01475         152 REIASEPLADHVFYVEDFSTIEELTKKFQGKIC  184 (224)
T ss_pred             HHHhCCCcHhcEEEeCCHHHHHHHhhhcccccC
Confidence            999987654 66777776666655555554444

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>cd01477 vWA_F09G8-8_type VWA F09G8

Probab=99.72  E-value=2.3e-16  Score=150.97  Aligned_cols=158  Identities=16%  Similarity=0.155  Sum_probs=117.7

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC---------CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHH
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---------QDSFNIIAFNGETHLFSSSMKLASQGTIINATQW  393 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~---------~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~  393 (591)
                      ....|++||||.|+||...+++.+|+.+..++..+.-         ++|++||.|+++++..++.....+.+++..+++.
T Consensus        17 ~~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~d~~~~~~~~~ai~~   96 (193)
T cd01477          17 NLWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLNDLQSFDDLYSQIQG   96 (193)
T ss_pred             cceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecccccCHHHHHHHHHH
Confidence            4678999999999999988999999999988776542         5899999999999887776443455566555443


Q ss_pred             -HhcCCCCCCCchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCCCh-hhHHHHHHHHHhcCCCCCCeEEEEEcCCC
Q 007718          394 -LSSLVAGGGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSISPRICTFGVGLY  466 (591)
Q Consensus       394 -i~~l~~~GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~-~~i~~~v~~~~~~~~~~~~ri~t~GiG~~  466 (591)
                       +..+..+|||++..||+.|.+++...     ++..+++||||||..+.. .......+ .+.   ..++.||+||+|.+
T Consensus        97 ~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~~a~-~l~---~~GI~i~tVGiG~~  172 (193)
T cd01477          97 SLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRPIAA-RLK---STGIAIITVAFTQD  172 (193)
T ss_pred             HhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHHHHH-HHH---HCCCEEEEEEeCCC
Confidence             22455668999999999999998642     334678999999865433 22322222 222   23699999999999


Q ss_pred             CCHHHHHHHHHhCCCEEE
Q 007718          467 CNHYFLQILAQIGRGYYD  484 (591)
Q Consensus       467 ~~~~lL~~LA~~~~G~~~  484 (591)
                      .|..+++.|++...+.+.
T Consensus       173 ~d~~~~~~L~~ias~~~~  190 (193)
T cd01477         173 ESSNLLDKLGKIASPGMN  190 (193)
T ss_pred             CCHHHHHHHHHhcCCCCC
Confidence            998888888887655443

8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo

>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration

Probab=99.72  E-value=2.6e-16  Score=149.25  Aligned_cols=159  Identities=19%  Similarity=0.210  Sum_probs=119.1

Q ss_pred             eEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC-CCCC
Q 007718          327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AGGG  402 (591)
Q Consensus       327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-~~Gg  402 (591)
                      |++|+||.|+||.+..++.+|+.+..+++.|..   +.||+++.|++++....+.....+..++.++   ++.+. .+|+
T Consensus         2 Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~---i~~~~~~~g~   78 (177)
T cd01469           2 DIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSL---VKHISQLLGL   78 (177)
T ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecCccCCHHHHHHH---HHhCccCCCC
Confidence            799999999999988999999999999998863   6899999999998876654433444444444   55554 3588


Q ss_pred             CchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC----HHHHH
Q 007718          403 TNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----HYFLQ  473 (591)
Q Consensus       403 T~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~----~~lL~  473 (591)
                      |+++.||+.|.+.+..     +++..+.+|++|||..++.....+.++ .+.   ..++.||++|+|...+    ...|+
T Consensus        79 T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~~~~~~~-~~k---~~gv~v~~Vgvg~~~~~~~~~~~L~  154 (177)
T cd01469          79 TNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLLKDVIP-QAE---REGIIRYAIGVGGHFQRENSREELK  154 (177)
T ss_pred             ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccccHHHHH-HHH---HCCcEEEEEEecccccccccHHHHH
Confidence            9999999999987632     234567999999999986553322222 222   2359999999998764    68899


Q ss_pred             HHHHhCCCE-EEEcCCCCch
Q 007718          474 ILAQIGRGY-YDSAYDPGSV  492 (591)
Q Consensus       474 ~LA~~~~G~-~~~v~~~~~l  492 (591)
                      .||+.+++. ++.+.+.+++
T Consensus       155 ~ias~p~~~h~f~~~~~~~l  174 (177)
T cd01469         155 TIASKPPEEHFFNVTDFAAL  174 (177)
T ss_pred             HHhcCCcHHhEEEecCHHHh
Confidence            999998764 4556665544

Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.

>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.70  E-value=4.9e-16  Score=143.48  Aligned_cols=145  Identities=27%  Similarity=0.283  Sum_probs=109.3

Q ss_pred             ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCc
Q 007718          326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN  404 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~  404 (591)
                      ++++|++|+||||.+.++..++.++..++..+. .+++++++.|+++.... .   .....+..++.+++..+.++|||+
T Consensus         1 ~~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~~-~---~~~~~~~~~~~~~l~~~~~~ggT~   76 (152)
T cd01462           1 GPVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTK-I---VDKTDDLEEPVEFLSGVQLGGGTD   76 (152)
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceEE-e---cCCcccHHHHHHHHhcCCCCCCcC
Confidence            479999999999999899999999988888776 48999999999994332 1   123456777788888888899999


Q ss_pred             hHHHHHHHHHhhhcCCCCccEEEEEecCCC-CChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHh
Q 007718          405 ILLPLKQAIKLLSDTSESIPLIFLITDGTV-GDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQI  478 (591)
Q Consensus       405 l~~aL~~a~~~l~~~~~~~~~IillTDG~~-~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~  478 (591)
                      +..+|..+++.+.........||++|||.. ....... ...+...   ..+++||++|+|++.|..+++..|+.
T Consensus        77 l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~~~~~~-~~~~~~~---~~~~~v~~~~~g~~~~~~~~~~~~~~  147 (152)
T cd01462          77 INKALRYALELIERRDPRKADIVLITDGYEGGVSDELL-REVELKR---SRVARFVALALGDHGNPGYDRISAED  147 (152)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCHHHH-HHHHHHH---hcCcEEEEEEecCCCCchHHHHhhhh
Confidence            999999999998764444568999999963 3333332 1122221   23589999999999888866655554

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if

>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions

Probab=99.69  E-value=9.8e-16  Score=143.42  Aligned_cols=147  Identities=18%  Similarity=0.173  Sum_probs=111.5

Q ss_pred             eEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC-CCCC
Q 007718          327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AGGG  402 (591)
Q Consensus       327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-~~Gg  402 (591)
                      |++||+|.|+||.+..++.+|+++..+++.+.   ++++++|+.|++++....+....   .+.+.+.+.++.+. .+|+
T Consensus         2 Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~~l~~~---~~~~~l~~~l~~~~~~~g~   78 (164)
T cd01482           2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAY---TSKEDVLAAIKNLPYKGGN   78 (164)
T ss_pred             CEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEEecCCC---CCHHHHHHHHHhCcCCCCC
Confidence            79999999999998899999999999998874   57899999999998765543222   33455666677776 4689


Q ss_pred             CchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 007718          403 TNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ  477 (591)
Q Consensus       403 T~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~  477 (591)
                      |+++.||+.+.+.+..     .++..+.||++|||..++.  +.+ +.+.+.   ..++.||+||+|.. +...|+.||.
T Consensus        79 T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~--~~~-~a~~lk---~~gi~i~~ig~g~~-~~~~L~~ia~  151 (164)
T cd01482          79 TRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDD--VEL-PARVLR---NLGVNVFAVGVKDA-DESELKMIAS  151 (164)
T ss_pred             ChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCch--HHH-HHHHHH---HCCCEEEEEecCcC-CHHHHHHHhC
Confidence            9999999998876432     2345678999999998653  112 222222   24699999999984 6889999999


Q ss_pred             hCCCEE
Q 007718          478 IGRGYY  483 (591)
Q Consensus       478 ~~~G~~  483 (591)
                      .+...+
T Consensus       152 ~~~~~~  157 (164)
T cd01482         152 KPSETH  157 (164)
T ss_pred             CCchhe
Confidence            876544

The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.

>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.69  E-value=7.7e-16  Score=142.84  Aligned_cols=148  Identities=21%  Similarity=0.229  Sum_probs=115.8

Q ss_pred             eEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC-C-
Q 007718          327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG-G-  401 (591)
Q Consensus       327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~-G-  401 (591)
                      |++||+|+||||.+.+++.+++++..++..+.   ++++++|+.|+++.....+.....   +..+..+.++.+... | 
T Consensus         2 di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~   78 (161)
T cd01450           2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYK---SKDDLLKAVKNLKYLGGG   78 (161)
T ss_pred             cEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEEECCCCC---CHHHHHHHHHhcccCCCC
Confidence            79999999999998899999999999998886   489999999999877655433222   344555666666544 3 


Q ss_pred             CCchHHHHHHHHHhhhcCC----CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 007718          402 GTNILLPLKQAIKLLSDTS----ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ  477 (591)
Q Consensus       402 gT~l~~aL~~a~~~l~~~~----~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~  477 (591)
                      +|++..||..+.+.+....    +..+.+||+|||..++.....+.++....    .++++++||+|. .+...|+.||.
T Consensus        79 ~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~----~~v~v~~i~~g~-~~~~~l~~la~  153 (161)
T cd01450          79 GTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGGDPKEAAAKLKD----EGIKVFVVGVGP-ADEEELREIAS  153 (161)
T ss_pred             CccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCcchHHHHHHHHH----CCCEEEEEeccc-cCHHHHHHHhC
Confidence            8999999999999987653    56679999999998775544444444322    359999999999 78999999999


Q ss_pred             hCCCE
Q 007718          478 IGRGY  482 (591)
Q Consensus       478 ~~~G~  482 (591)
                      .+++.
T Consensus       154 ~~~~~  158 (161)
T cd01450         154 CPSER  158 (161)
T ss_pred             CCCCC
Confidence            98443

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A

>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional

Probab=99.69  E-value=1.4e-15  Score=162.76  Aligned_cols=180  Identities=22%  Similarity=0.249  Sum_probs=132.8

Q ss_pred             cCceEEEEEeCCcCCCcch-HHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeeecCcccC--CHHHHHHHHHHHh-c
Q 007718          324 FRKDVVFLVDVSGSMQGVL-LEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLA--SQGTIINATQWLS-S  396 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~-i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~--~~~~~~~a~~~i~-~  396 (591)
                      ...+++||||.|+||.... ++.+|.++..++..+..   ..+++++.|++....+++.....  +.+.+..++..+. .
T Consensus        41 ~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s~Dk~~aL~~I~sL~~~  120 (576)
T PTZ00441         41 EEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASKDKEQALIIVKSLRKT  120 (576)
T ss_pred             CCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCccccHHHHHHHHHHHHhh
Confidence            4679999999999997544 47899999999998853   34555699999988766543222  2334444444333 4


Q ss_pred             CCCCCCCchHHHHHHHHHhhhcC---CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718          397 LVAGGGTNILLPLKQAIKLLSDT---SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ  473 (591)
Q Consensus       397 l~~~GgT~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~  473 (591)
                      +..+|+|++..||..+.+.+...   .+..+.|||||||..++.....+.++.. .   ..++.|++||||.+.+..+|+
T Consensus       121 ~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~dvleaAq~L-R---~~GVeI~vIGVG~g~n~e~Lr  196 (576)
T PTZ00441        121 YLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKYRALEESRKL-K---DRNVKLAVIGIGQGINHQFNR  196 (576)
T ss_pred             ccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcccHHHHHHHH-H---HCCCEEEEEEeCCCcCHHHHH
Confidence            55679999999999998887643   3455799999999986544444444333 2   235899999999999999999


Q ss_pred             HHH----HhCCCEEEEcCCCCchHHHHHHHHHHhccce
Q 007718          474 ILA----QIGRGYYDSAYDPGSVDYRIRRFFTAASSVF  507 (591)
Q Consensus       474 ~LA----~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p~  507 (591)
                      .||    ..++|.++.+.+.+++...+..++++++..+
T Consensus       197 lIAgC~p~~g~c~~Y~vadf~eL~~ivk~LikkVC~ev  234 (576)
T PTZ00441        197 LLAGCRPREGKCKFYSDADWEEAKNLIKPFIAKVCTEV  234 (576)
T ss_pred             HHhccCCCCCCCceEEeCCHHHHHHHHHHHHHHhcccc
Confidence            999    3466788888888888888888888877654

>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases

Probab=99.69  E-value=5.8e-16  Score=146.46  Aligned_cols=141  Identities=19%  Similarity=0.252  Sum_probs=103.2

Q ss_pred             eEEEEEeCCcCCCc-chHHHHHHHHHHHHHhcCC-CCeEEEEEeCCce--E---eeecCcccCCHHHHHHHHHHHhcCCC
Q 007718          327 DVVFLVDVSGSMQG-VLLEQTKNALSASLSKLNP-QDSFNIIAFNGET--H---LFSSSMKLASQGTIINATQWLSSLVA  399 (591)
Q Consensus       327 ~ivfviD~SgSM~g-~~i~~ak~al~~~l~~L~~-~d~f~Ii~F~~~~--~---~~~~~~~~~~~~~~~~a~~~i~~l~~  399 (591)
                      .++|+||+||||.+ .+++.+|+++..++..+.. +|+|+|+.|++..  .   .+.. ....+......+.+.+..+.+
T Consensus         2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~   80 (174)
T cd01454           2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIK-IKDFDESLHERARKRLAALSP   80 (174)
T ss_pred             EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEE-ecCcccccchhHHHHHHccCC
Confidence            47899999999998 5999999999999988875 9999999999873  1   1211 012222222345666788888


Q ss_pred             CCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhh------HHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007718          400 GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERG------ICNEIKSYLTNTRSISPRICTFGVGLYCN  468 (591)
Q Consensus       400 ~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~------i~~~v~~~~~~~~~~~~ri~t~GiG~~~~  468 (591)
                      +|+|+++.||..+.+.+...+...+.||++|||.+++...      .++...+...+....++++|++|+|.+.+
T Consensus        81 ~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~  155 (174)
T cd01454          81 GGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDAT  155 (174)
T ss_pred             CCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCccc
Confidence            8999999999999999877666778999999999875321      12222111222223469999999999876

Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=99.67  E-value=1.8e-15  Score=166.53  Aligned_cols=160  Identities=23%  Similarity=0.264  Sum_probs=124.9

Q ss_pred             CccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHh-cCCCCeEEEEEeCCc-eEeeecCcccCCHHHHHHHHHHHhcCCC
Q 007718          322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVA  399 (591)
Q Consensus       322 ~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~-L~~~d~f~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l~~  399 (591)
                      ...+..++||||+||||.+.+|..+|.++..+|.. +.+.|+++||.|+++ +.+..+.    +. ++..+.++|+.+.+
T Consensus       398 ~~~~~~vvfvvD~SGSM~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lpp----T~-~~~~~~~~L~~l~~  472 (584)
T PRK13406        398 QRSETTTIFVVDASGSAALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPP----TR-SLVRAKRSLAGLPG  472 (584)
T ss_pred             ccCCccEEEEEECCCCCcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCC----Cc-CHHHHHHHHhcCCC
Confidence            35678999999999999999999999999999865 678999999999765 6654432    22 66777888999999


Q ss_pred             CCCCchHHHHHHHHHhhhcC--CCCccEEEEEecCCCCChh--------hHH--HHHHHHHhcCCCCCCeEEEEEcCCCC
Q 007718          400 GGGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDER--------GIC--NEIKSYLTNTRSISPRICTFGVGLYC  467 (591)
Q Consensus       400 ~GgT~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~--------~i~--~~v~~~~~~~~~~~~ri~t~GiG~~~  467 (591)
                      +|||+|+.||..|++.+...  ++..+.|||+|||..+...        ...  ..+...+   ...++++++|++|...
T Consensus       473 gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~---~~~gi~~~vId~g~~~  549 (584)
T PRK13406        473 GGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARAL---RAAGLPALVIDTSPRP  549 (584)
T ss_pred             CCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHH---HhcCCeEEEEecCCCC
Confidence            99999999999999987543  3456899999999987421        011  1112222   2345899999999764


Q ss_pred             CHHHHHHHHHhCCCEEEEcCCCC
Q 007718          468 NHYFLQILAQIGRGYYDSAYDPG  490 (591)
Q Consensus       468 ~~~lL~~LA~~~~G~~~~v~~~~  490 (591)
                       ..+++.||+.++|.|+.+.+.+
T Consensus       550 -~~~~~~LA~~~gg~y~~l~~~~  571 (584)
T PRK13406        550 -QPQARALAEAMGARYLPLPRAD  571 (584)
T ss_pred             -cHHHHHHHHhcCCeEEECCCCC
Confidence             4578999999999999988754

>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology

Probab=99.67  E-value=5.5e-15  Score=141.72  Aligned_cols=172  Identities=15%  Similarity=0.143  Sum_probs=120.8

Q ss_pred             eEEEEEeCCcCCCcchHH-HHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcc--cCCHHHHHHHHHHHhc-CCC
Q 007718          327 DVVFLVDVSGSMQGVLLE-QTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMK--LASQGTIINATQWLSS-LVA  399 (591)
Q Consensus       327 ~ivfviD~SgSM~g~~i~-~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~--~~~~~~~~~a~~~i~~-l~~  399 (591)
                      |++|+||.|+||....++ ..++.++.+++.|.   .++|++|+.|++.++...+...  ..+.+.+..+++.+.. ...
T Consensus         2 Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~   81 (192)
T cd01473           2 DLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKKINDLKNSYRS   81 (192)
T ss_pred             cEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcccccCHHHHHHHHHHHHhccCC
Confidence            799999999999877787 48999999999885   4689999999999876555332  2334455555544442 334


Q ss_pred             CCCCchHHHHHHHHHhhhcCC----CCccEEEEEecCCCCChh--hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718          400 GGGTNILLPLKQAIKLLSDTS----ESIPLIFLITDGTVGDER--GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ  473 (591)
Q Consensus       400 ~GgT~l~~aL~~a~~~l~~~~----~~~~~IillTDG~~~~~~--~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~  473 (591)
                      +|+|++..||+.|.+.+....    +..+.+||+|||..++..  .+.+..+ .+.   ..++.+|++|+|.. +...|+
T Consensus        82 ~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~-~lk---~~gV~i~~vGiG~~-~~~el~  156 (192)
T cd01473          82 GGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISL-LYK---EENVKLLVVGVGAA-SENKLK  156 (192)
T ss_pred             CCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHH-HHH---HCCCEEEEEEeccc-cHHHHH
Confidence            699999999999998875432    236789999999987532  2322222 222   23699999999985 677899


Q ss_pred             HHHHhC--CC--EEEEcCCCCchHHHHHHHHHHh
Q 007718          474 ILAQIG--RG--YYDSAYDPGSVDYRIRRFFTAA  503 (591)
Q Consensus       474 ~LA~~~--~G--~~~~v~~~~~l~~~~~~~~~~~  503 (591)
                      .||...  .+  .+++..+.+++......+..++
T Consensus       157 ~ia~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~i  190 (192)
T cd01473         157 LLAGCDINNDNCPNVIKTEWNNLNGISKFLTDKI  190 (192)
T ss_pred             HhcCCCCCCCCCCeEEecchhhHHHHHHHHHhhc
Confidence            999862  22  2333345777766655555544

CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.

>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma

Probab=99.66  E-value=2e-15  Score=142.63  Aligned_cols=166  Identities=29%  Similarity=0.368  Sum_probs=121.8

Q ss_pred             eEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcC-CCCCC
Q 007718          327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSL-VAGGG  402 (591)
Q Consensus       327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l-~~~Gg  402 (591)
                      ||+||||.|+||.+..++.+|+++..+++.+   +.+.||+++.|++......+.....+.+.+..++  ...+ ..+|+
T Consensus         1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~g~   78 (178)
T PF00092_consen    1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTDYQSKNDLLNAI--NDSIPSSGGG   78 (178)
T ss_dssp             EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTSHSSHHHHHHHH--HTTGGCCBSS
T ss_pred             CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeecccccccccccccccccccccc--cccccccchh
Confidence            7999999999999989999999999999966   4588999999999998766544333444444443  1433 44599


Q ss_pred             CchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 007718          403 TNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ  477 (591)
Q Consensus       403 T~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~  477 (591)
                      |++..||+.+.+.+...     ++..+.+|++|||.+++..............   .++.++++|+ ..++...|+.||.
T Consensus        79 t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~---~~i~~~~ig~-~~~~~~~l~~la~  154 (178)
T PF00092_consen   79 TNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKS---NGIKVIAIGI-DNADNEELRELAS  154 (178)
T ss_dssp             B-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHH---CTEEEEEEEE-SCCHHHHHHHHSH
T ss_pred             hhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHh---cCcEEEEEec-CcCCHHHHHHHhC
Confidence            99999999999998654     5667799999999998775444443333322   2466666666 4678999999997


Q ss_pred             hC--CCEEEEcCCCCchHHHHHH
Q 007718          478 IG--RGYYDSAYDPGSVDYRIRR  498 (591)
Q Consensus       478 ~~--~G~~~~v~~~~~l~~~~~~  498 (591)
                      .+  .+++.++.+..++.+..++
T Consensus       155 ~~~~~~~~~~~~~~~~l~~~~~~  177 (178)
T PF00092_consen  155 CPTSEGHVFYLADFSDLSQIIQQ  177 (178)
T ss_dssp             SSTCHHHEEEESSHHHHHHHHHH
T ss_pred             CCCCCCcEEEcCCHHHHHHHHhc
Confidence            64  3677888887777655543

Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....

>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions

Probab=99.65  E-value=6.6e-15  Score=137.54  Aligned_cols=146  Identities=18%  Similarity=0.224  Sum_probs=107.0

Q ss_pred             eEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCC--ceEeeecCcccCCHHHHHHHHHHHhcCCC-C
Q 007718          327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNG--ETHLFSSSMKLASQGTIINATQWLSSLVA-G  400 (591)
Q Consensus       327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~--~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~  400 (591)
                      |++|++|+|+||.+ .++..|+++..++..|..   .++++++.|++  +.....+.....+   .+.+.+.|+.+.. +
T Consensus         2 dv~~llD~S~Sm~~-~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~---~~~l~~~i~~l~~~g   77 (163)
T cd01476           2 DLLFVLDSSGSVRG-KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHND---GEELLEKVDNLRFIG   77 (163)
T ss_pred             CEEEEEeCCcchhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCC---HHHHHHHHHhCccCC
Confidence            78999999999986 688889999999988864   89999999999  4544443222223   3445556777775 5


Q ss_pred             CCCchHHHHHHHHHhhhc----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC--CCHHHHHH
Q 007718          401 GGTNILLPLKQAIKLLSD----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY--CNHYFLQI  474 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~--~~~~lL~~  474 (591)
                      |+|++..||+.+.+++..    .++..+.++++|||..++..  .... +.+..  ..++.+|+||+|+.  .|...|+.
T Consensus        78 g~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~--~~~~-~~l~~--~~~v~v~~vg~g~~~~~~~~~L~~  152 (163)
T cd01476          78 GTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDDP--EKQA-RILRA--VPNIETFAVGTGDPGTVDTEELHS  152 (163)
T ss_pred             CCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCch--HHHH-HHHhh--cCCCEEEEEECCCccccCHHHHHH
Confidence            889999999999999852    23345789999999986432  1111 12222  24589999999998  89888998


Q ss_pred             HHHhCCC
Q 007718          475 LAQIGRG  481 (591)
Q Consensus       475 LA~~~~G  481 (591)
                      ||.....
T Consensus       153 ia~~~~~  159 (163)
T cd01476         153 ITGNEDH  159 (163)
T ss_pred             HhCCCcc
Confidence            8766553

Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.

>smart00327 VWA von Willebrand factor (vWF) type A domain

Probab=99.62  E-value=2.2e-14  Score=134.98  Aligned_cols=154  Identities=27%  Similarity=0.319  Sum_probs=122.4

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC--
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA--  399 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~--  399 (591)
                      |.+++|++|.|+||.+.+++.+++++..++..+..   +++++|+.|++....+.+..   ...+...+...++.+..  
T Consensus         1 ~~~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~   77 (177)
T smart00327        1 PLDVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFPLN---DSRSKDALLEALASLSYKL   77 (177)
T ss_pred             CccEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEEccc---ccCCHHHHHHHHHhcCCCC
Confidence            57899999999999989999999999999998876   89999999999877665432   23344556666777774  


Q ss_pred             CCCCchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHH
Q 007718          400 GGGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQI  474 (591)
Q Consensus       400 ~GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~  474 (591)
                      +|+|++..+|+.+.+.+...     .+..+.|+++|||..++.....+.++....    .++.+++||+|...+...|+.
T Consensus        78 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~~~~~~~~~~~~----~~i~i~~i~~~~~~~~~~l~~  153 (177)
T smart00327       78 GGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGGDLLKAAKELKR----SGVKVFVVGVGNDVDEEELKK  153 (177)
T ss_pred             CCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHH----CCCEEEEEEccCccCHHHHHH
Confidence            69999999999999987521     122568999999998865445455444432    248999999998878999999


Q ss_pred             HHHhCCCEEEE
Q 007718          475 LAQIGRGYYDS  485 (591)
Q Consensus       475 LA~~~~G~~~~  485 (591)
                      ++..++|.|.+
T Consensus       154 ~~~~~~~~~~~  164 (177)
T smart00327      154 LASAPGGVYVF  164 (177)
T ss_pred             HhCCCcceEEe
Confidence            99999999876

VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.

>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.62  E-value=2.4e-14  Score=134.21  Aligned_cols=168  Identities=15%  Similarity=0.089  Sum_probs=115.9

Q ss_pred             ceEEEEEeCCcCCC------c---chHHHHHHHHHHHHH--hcCCCCeEEEEEeCCceEeeec----CcccCCHHHHHHH
Q 007718          326 KDVVFLVDVSGSMQ------G---VLLEQTKNALSASLS--KLNPQDSFNIIAFNGETHLFSS----SMKLASQGTIINA  390 (591)
Q Consensus       326 ~~ivfviD~SgSM~------g---~~i~~ak~al~~~l~--~L~~~d~f~Ii~F~~~~~~~~~----~~~~~~~~~~~~a  390 (591)
                      |.+++++|.||||.      |   ++++.+|..+..+.+  .-+.+|+++   |++......+    .....+.+.++..
T Consensus         1 ~~l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG---~~g~~~~~~~lt~d~p~t~d~~~~~~l   77 (191)
T cd01455           1 KRLKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIG---HSGDGPCVPFVKTNHPPKNNKERLETL   77 (191)
T ss_pred             CceEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHHHHhCccceee---ecCcccccCccccccCcccchhHHHHH
Confidence            46899999999992      2   567888888777763  334588888   3444321111    1111233434445


Q ss_pred             HHHHhcCCCC---CCCchHHHHHHHHHhhh-cCCCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCC
Q 007718          391 TQWLSSLVAG---GGTNILLPLKQAIKLLS-DTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGL  465 (591)
Q Consensus       391 ~~~i~~l~~~---GgT~l~~aL~~a~~~l~-~~~~~~~~IillTDG~~~~~~-~i~~~v~~~~~~~~~~~~ri~t~GiG~  465 (591)
                      .+.++..+.+   .+|.  .||..|++.+. ..+...+.|||+|||+.+... ...+.......   ..+++||+||||.
T Consensus        78 ~~~l~~~q~g~ag~~Ta--dAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~---~~gV~iytIgiG~  152 (191)
T cd01455          78 KMMHAHSQFCWSGDHTV--EATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAR---EPNVNAFVIFIGS  152 (191)
T ss_pred             HHHHHhcccCccCccHH--HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHH---hCCCEEEEEEecC
Confidence            5556655543   4455  99999999997 766778899999999976443 22221122221   2469999999998


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHH
Q 007718          466 YCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTA  502 (591)
Q Consensus       466 ~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~  502 (591)
                      . +...|+.+|+.++|.|+.+.+.+++++.++.++..
T Consensus       153 ~-d~~~l~~iA~~tgG~~F~A~d~~~L~~iy~~I~~~  188 (191)
T cd01455         153 L-SDEADQLQRELPAGKAFVCMDTSELPHIMQQIFTS  188 (191)
T ss_pred             C-CHHHHHHHHhCCCCcEEEeCCHHHHHHHHHHHHHH
Confidence            5 77889999999999999999998888877777764

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A

>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]

Probab=99.61  E-value=2e-14  Score=138.25  Aligned_cols=165  Identities=23%  Similarity=0.256  Sum_probs=125.0

Q ss_pred             ccCceEEEEEeCCcCCCcc-hHHHHHHHHHHHHHh-cCCCCeEEEEEeC-CceEeeecCcccCCHHHHHHHHHHHhcCCC
Q 007718          323 VFRKDVVFLVDVSGSMQGV-LLEQTKNALSASLSK-LNPQDSFNIIAFN-GETHLFSSSMKLASQGTIINATQWLSSLVA  399 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~-~i~~ak~al~~~l~~-L~~~d~f~Ii~F~-~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~  399 (591)
                      ....-|+|++|.||||... +|+.+|-++..+|.. ..-.|++++|+|. ++++++.+.     ..+++.+.++|..+..
T Consensus        76 r~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~p-----T~sv~~~~~~L~~l~~  150 (261)
T COG1240          76 RAGNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPP-----TSSVELAERALERLPT  150 (261)
T ss_pred             CcCCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCC-----cccHHHHHHHHHhCCC
Confidence            3456799999999999986 899999999888754 4668999999998 456665442     2467888999999999


Q ss_pred             CCCCchHHHHHHHHHhhhcCC----CCccEEEEEecCCCCCh--hhHHHHHHHHHhcCCCCCCeEEEEEcCC-CCCHHHH
Q 007718          400 GGGTNILLPLKQAIKLLSDTS----ESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSISPRICTFGVGL-YCNHYFL  472 (591)
Q Consensus       400 ~GgT~l~~aL~~a~~~l~~~~----~~~~~IillTDG~~~~~--~~i~~~v~~~~~~~~~~~~ri~t~GiG~-~~~~~lL  472 (591)
                      +|+|.|.+||..+++++....    +....+|+||||..+..  ..+..............+..+..+.+.. .....+.
T Consensus       151 GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~~~~g~~  230 (261)
T COG1240         151 GGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSEVRLGLA  230 (261)
T ss_pred             CCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCccccccHH
Confidence            999999999999999987643    46679999999998643  2222222222222233456667777643 3556789


Q ss_pred             HHHHHhCCCEEEEcCCCCch
Q 007718          473 QILAQIGRGYYDSAYDPGSV  492 (591)
Q Consensus       473 ~~LA~~~~G~~~~v~~~~~l  492 (591)
                      +.||+..||.|+++.+..+.
T Consensus       231 ~~iA~~~Gg~~~~L~~l~~~  250 (261)
T COG1240         231 EEIARASGGEYYHLDDLSDD  250 (261)
T ss_pred             HHHHHHhCCeEEecccccch
Confidence            99999999999999887644

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=99.60  E-value=2.3e-14  Score=159.30  Aligned_cols=163  Identities=24%  Similarity=0.268  Sum_probs=121.9

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHh-cCCCCeEEEEEeCCce-EeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGET-HLFSSSMKLASQGTIINATQWLSSLVAG  400 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~-L~~~d~f~Ii~F~~~~-~~~~~~~~~~~~~~~~~a~~~i~~l~~~  400 (591)
                      .....++||||+||||.+.+|+.+|.++..++.. +.++|+|+|++|++.. ..+.+.    + .+...+.+.|+.+.++
T Consensus       405 ~~~~~v~fvvD~SGSM~~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~----t-~~~~~~~~~L~~l~~g  479 (589)
T TIGR02031       405 KSGRLLIFVVDASGSAAVARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPP----S-RSVEQAKRRLDVLPGG  479 (589)
T ss_pred             ccCceEEEEEECCCCCChHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCC----C-CCHHHHHHHHhcCCCC
Confidence            3456799999999999999999999999999875 4578999999998764 444332    1 2455567778999999


Q ss_pred             CCCchHHHHHHHHHhhhcC--CCCccEEEEEecCCCCChh------------hHHHHHHHHHhcCCCCCCeEEEEEcCCC
Q 007718          401 GGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDER------------GICNEIKSYLTNTRSISPRICTFGVGLY  466 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~------------~i~~~v~~~~~~~~~~~~ri~t~GiG~~  466 (591)
                      |+|+++.||..|++.+...  ....+.|||+|||..+...            ...+.+..........++.+++|++|..
T Consensus       480 GgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vid~~~~  559 (589)
T TIGR02031       480 GGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIREAGMPALVIDTAMR  559 (589)
T ss_pred             CCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence            9999999999999988643  2345689999999986321            1112211111112234588999999976


Q ss_pred             C-CHHHHHHHHHhCCCEEEEcCCCC
Q 007718          467 C-NHYFLQILAQIGRGYYDSAYDPG  490 (591)
Q Consensus       467 ~-~~~lL~~LA~~~~G~~~~v~~~~  490 (591)
                      . +..+++.||+.++|.|+++.+.+
T Consensus       560 ~~~~~~~~~lA~~~~g~y~~l~~~~  584 (589)
T TIGR02031       560 FVSTGFAQKLARKMGAHYIYLPNAT  584 (589)
T ss_pred             CccchHHHHHHHhcCCcEEeCCCCC
Confidence            3 45689999999999999988754

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain

Probab=99.58  E-value=1.6e-14  Score=114.43  Aligned_cols=69  Identities=20%  Similarity=0.274  Sum_probs=64.9

Q ss_pred             CccccccceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEeh
Q 007718           79 PALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISL  152 (591)
Q Consensus        79 ~~~~pL~~~~v~v~V~~~~~~a~v~~~q~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k  152 (591)
                      ...+||++.+|+..|.|+  .|.++++++|.|   ++++++|+.|+|||+++++|+||++.|+||++++++++|
T Consensus         9 ~~~LpL~~~~v~a~v~G~--~~~~ta~lty~N---~~~~plEg~f~fPL~e~~~V~gfea~i~gr~v~~~v~~r   77 (78)
T PF13757_consen    9 RNPLPLQSSRVTACVNGY--SAGTTASLTYEN---PEDRPLEGVFVFPLDEGATVVGFEADIGGRIVTVQVQDR   77 (78)
T ss_pred             CCcceEEEeEEEEEEEcc--cccEEEEEEEEC---CCCCcEEEEEEEecCCCcEEEEEEEEeCCcEEEEEeeec
Confidence            446999999999999999  577999999999   799999999999999999999999999999999999987

>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.57  E-value=1.3e-13  Score=126.76  Aligned_cols=149  Identities=30%  Similarity=0.437  Sum_probs=114.3

Q ss_pred             ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCC
Q 007718          326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG  402 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~Gg  402 (591)
                      .+++|++|+|+||...+++.+++++..++..+..   .++++++.|++....+.+.....+.+.+.++++.+.. ..+|+
T Consensus         1 ~~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   79 (161)
T cd00198           1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKK-GLGGG   79 (161)
T ss_pred             CcEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceeecccccCCHHHHHHHHHhccc-CCCCC
Confidence            3689999999999778999999999999999986   8999999999987766554333344555555443332 25699


Q ss_pred             CchHHHHHHHHHhhhcC--CCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007718          403 TNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG  479 (591)
Q Consensus       403 T~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~-~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~  479 (591)
                      |++..++..+.+.+...  ....+.++++|||..+... ...+.+... .   ..+++++.+|+|...+...|+.|+..+
T Consensus        80 t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~-~---~~~v~v~~v~~g~~~~~~~l~~l~~~~  155 (161)
T cd00198          80 TNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAAREL-R---KLGITVYTIGIGDDANEDELKEIADKT  155 (161)
T ss_pred             ccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHH-H---HcCCEEEEEEcCCCCCHHHHHHHhccc
Confidence            99999999999998653  4567899999999987654 333333332 2   235899999999977899999999887

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.

>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions

Probab=99.54  E-value=3.4e-13  Score=126.13  Aligned_cols=145  Identities=17%  Similarity=0.138  Sum_probs=108.2

Q ss_pred             ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC-C
Q 007718          326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG-G  401 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~-G  401 (591)
                      +|++|++|.|+||....++.+|+.+..+++.+.   .+.|++++.|+++++..+......+.+.   ..+.|+++... |
T Consensus         1 ~DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~~~~~~~~---l~~~i~~i~~~~g   77 (165)
T cd01481           1 KDIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKAD---VLGAVRRLRLRGG   77 (165)
T ss_pred             CCEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEeccccCCHHH---HHHHHHhcccCCC
Confidence            489999999999988899999999999999885   4679999999999877655433344444   45556666664 4


Q ss_pred             -CCchHHHHHHHHHhhhcC-------CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718          402 -GTNILLPLKQAIKLLSDT-------SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ  473 (591)
Q Consensus       402 -gT~l~~aL~~a~~~l~~~-------~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~  473 (591)
                       +|+++.||+.+.+.+...       ++.++.++++|||..++.  +... .+.+.+   .++.+|++|+|. .|...|+
T Consensus        78 ~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~--~~~~-a~~lr~---~gv~i~~vG~~~-~~~~eL~  150 (165)
T cd01481          78 SQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDD--VERP-AVALKR---AGIVPFAIGARN-ADLAELQ  150 (165)
T ss_pred             CcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcch--HHHH-HHHHHH---CCcEEEEEeCCc-CCHHHHH
Confidence             589999999988765432       133568999999998753  2222 222222   358999999984 6899999


Q ss_pred             HHHHhCC
Q 007718          474 ILAQIGR  480 (591)
Q Consensus       474 ~LA~~~~  480 (591)
                      .||....
T Consensus       151 ~ias~p~  157 (165)
T cd01481         151 QIAFDPS  157 (165)
T ss_pred             HHhCCCc
Confidence            9998764

The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.

>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]

Probab=99.54  E-value=1e-13  Score=125.98  Aligned_cols=139  Identities=24%  Similarity=0.391  Sum_probs=103.6

Q ss_pred             EEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC------CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHH-HhcCCCC
Q 007718          328 VVFLVDVSGSMQGVLLEQTKNALSASLSKLNP------QDSFNIIAFNGETHLFSSSMKLASQGTIINATQW-LSSLVAG  400 (591)
Q Consensus       328 ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~------~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~-i~~l~~~  400 (591)
                      ++|++|+||||.|++|+..+..++.+++.|..      ...++||+|++.+....+..   +      +.++ ...+.+.
T Consensus         6 ~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~---~------~~nF~~p~L~a~   76 (207)
T COG4245           6 CYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFT---D------AANFNPPILTAQ   76 (207)
T ss_pred             EEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechh---h------HhhcCCCceecC
Confidence            78999999999999999999999999998863      56899999999887765432   1      1111 1256788


Q ss_pred             CCCchHHHHHHHHHhhhcC---------CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC-CCHH
Q 007718          401 GGTNILLPLKQAIKLLSDT---------SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY-CNHY  470 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~~---------~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~-~~~~  470 (591)
                      |||.+++||+.+.++....         ....+.+||+|||+++|.-..-.....+   +.....++.++++|.. +|..
T Consensus        77 GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w~~~~~~~~~---~~~~~k~v~a~~~G~~~ad~~  153 (207)
T COG4245          77 GGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDWQAGAALVFQ---GERRAKSVAAFSVGVQGADNK  153 (207)
T ss_pred             CCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHHHhHHHHhhh---cccccceEEEEEecccccccH
Confidence            9999999999999998653         2456799999999997642221111111   1123357888888876 8888


Q ss_pred             HHHHHHHh
Q 007718          471 FLQILAQI  478 (591)
Q Consensus       471 lL~~LA~~  478 (591)
                      .|+++++.
T Consensus       154 ~L~qit~~  161 (207)
T COG4245         154 TLNQITEK  161 (207)
T ss_pred             HHHHHHHh
Confidence            99999865

>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.53  E-value=1.8e-13  Score=132.24  Aligned_cols=147  Identities=21%  Similarity=0.274  Sum_probs=107.9

Q ss_pred             CceEEEEEeCCcCCCcc-------hHHHHHHHHHHHHHhcC--CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHh
Q 007718          325 RKDVVFLVDVSGSMQGV-------LLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS  395 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~-------~i~~ak~al~~~l~~L~--~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~  395 (591)
                      +++++|+||+||||...       +++.+++++..++..+.  +.|++.++.|++....+.    +.+   ...+.+.+.
T Consensus         2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~~----~~~---~~~v~~~~~   74 (199)
T cd01457           2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRYD----NVN---SSKVDQLFA   74 (199)
T ss_pred             CcCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccccC----CcC---HHHHHHHHh
Confidence            57999999999999853       79999999999887664  467899999988875442    233   344455567


Q ss_pred             cCCCCCCCchHHHHHHHHHhhhcCC----C--CccEEEEEecCCCCChhhHHHHHHHHHhcCC-CCCCeEEEEEcCCC-C
Q 007718          396 SLVAGGGTNILLPLKQAIKLLSDTS----E--SIPLIFLITDGTVGDERGICNEIKSYLTNTR-SISPRICTFGVGLY-C  467 (591)
Q Consensus       396 ~l~~~GgT~l~~aL~~a~~~l~~~~----~--~~~~IillTDG~~~~~~~i~~~v~~~~~~~~-~~~~ri~t~GiG~~-~  467 (591)
                      ++.+.|+|++..+|+.+++.+....    .  ....||++|||.+++...+.+.+.+...+.. ..++.|+++++|.+ .
T Consensus        75 ~~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~~  154 (199)
T cd01457          75 ENSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQIGRDPA  154 (199)
T ss_pred             cCCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhccccCceEEEEEeCCcHH
Confidence            7888899999999998875433211    1  1478999999999877666555555433211 13588999999986 3


Q ss_pred             CHHHHHHHHHh
Q 007718          468 NHYFLQILAQI  478 (591)
Q Consensus       468 ~~~lL~~LA~~  478 (591)
                      +..+|+.|+..
T Consensus       155 ~~~~L~~ld~~  165 (199)
T cd01457         155 ATAFLKALDDQ  165 (199)
T ss_pred             HHHHHHHHhHH
Confidence            67789999875

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most

>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.53  E-value=9.4e-14  Score=159.53  Aligned_cols=185  Identities=26%  Similarity=0.335  Sum_probs=158.3

Q ss_pred             CCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEee----ecCcccCCHHHHHHHHHHHhc
Q 007718          321 RKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLF----SSSMKLASQGTIINATQWLSS  396 (591)
Q Consensus       321 ~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~----~~~~~~~~~~~~~~a~~~i~~  396 (591)
                      ....||+++|++|.||||.|.++..+|..+..+|+.|.++|.|++++|++++...    ...+.++|..|++...+.++.
T Consensus       221 aAt~pKdiviLlD~SgSm~g~~~~lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~~i~~  300 (1104)
T KOG2353|consen  221 AATSPKDIVILLDVSGSMSGLRLDLAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFNGTLVQATMRNKKVFKEAIET  300 (1104)
T ss_pred             ccCCccceEEEEeccccccchhhHHHHHHHHHHHHhcccCCeEEEEeeccccCcccccccCceeecchHHHHHHHHHHhh
Confidence            3467999999999999999999999999999999999999999999999997643    345678999999999999999


Q ss_pred             CCCCCCCchHHHHHHHHHhhhcCC----C-----CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC
Q 007718          397 LVAGGGTNILLPLKQAIKLLSDTS----E-----SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC  467 (591)
Q Consensus       397 l~~~GgT~l~~aL~~a~~~l~~~~----~-----~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~  467 (591)
                      +.+.|-+++..|++.|+++|....    +     -...|+++|||.+++...+++....     +...+|+|||-+|...
T Consensus       301 l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~~~~If~~yn~-----~~~~Vrvftflig~~~  375 (1104)
T KOG2353|consen  301 LDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDENAKEIFEKYNW-----PDKKVRVFTFLIGDEV  375 (1104)
T ss_pred             hccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCcccHHHHHHhhcc-----CCCceEEEEEEecccc
Confidence            998899999999999999987531    1     2348999999999988888766433     2456999999999753


Q ss_pred             -CHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccceEEe
Q 007718          468 -NHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTN  510 (591)
Q Consensus       468 -~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p~~~~  510 (591)
                       +...++-+|..+.|.|.++.+..++.......+.-+..|..-.
T Consensus       376 ~~~~~~~wmac~n~gyy~~I~~~~~v~~~~~~y~~vlsRp~vl~  419 (1104)
T KOG2353|consen  376 YDLDEIQWMACANKGYYVHIISIADVRENVLEYLDVLSRPLVLQ  419 (1104)
T ss_pred             cccccchhhhhhCCCceEeccchhhcChHhhhhhhhhccceeec
Confidence             4556999999999999999999999988888888887776554

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.50  E-value=6.2e-13  Score=149.61  Aligned_cols=156  Identities=24%  Similarity=0.301  Sum_probs=116.3

Q ss_pred             ccCceEEEEEeCCcCCCc-chHHHHHHHHHHHHH-hcCCCCeEEEEEeCCc-eEeeecCcccCCHHHHHHHHHHHhcCCC
Q 007718          323 VFRKDVVFLVDVSGSMQG-VLLEQTKNALSASLS-KLNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVA  399 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g-~~i~~ak~al~~~l~-~L~~~d~f~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l~~  399 (591)
                      .....++||||.||||.+ .++..+|.++..++. .+..+|+|+||.|+++ +..+.+.    + .+...+...|..+..
T Consensus       463 r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~----t-~~~~~~~~~L~~l~~  537 (633)
T TIGR02442       463 RAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPP----T-SSVELAARRLEELPT  537 (633)
T ss_pred             CCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCC----C-CCHHHHHHHHHhCCC
Confidence            456689999999999987 499999999988875 4567899999999864 5554432    2 234455567888999


Q ss_pred             CCCCchHHHHHHHHHhhhc----CCCCccEEEEEecCCCCCh---hhHHH---HHHHHHhcCCCCCCeEEEEEcCCC-CC
Q 007718          400 GGGTNILLPLKQAIKLLSD----TSESIPLIFLITDGTVGDE---RGICN---EIKSYLTNTRSISPRICTFGVGLY-CN  468 (591)
Q Consensus       400 ~GgT~l~~aL~~a~~~l~~----~~~~~~~IillTDG~~~~~---~~i~~---~v~~~~~~~~~~~~ri~t~GiG~~-~~  468 (591)
                      +|+|+|..||..|++.+..    .+...+.|||+|||..+..   ....+   .+.+.+.   ..++.+++|+++.. ..
T Consensus       538 gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~---~~~i~~~vIdt~~~~~~  614 (633)
T TIGR02442       538 GGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLA---ARGILFVVIDTESGFVR  614 (633)
T ss_pred             CCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHH---hcCCeEEEEeCCCCCcc
Confidence            9999999999999998872    3346679999999998652   11112   2222222   23577888887653 45


Q ss_pred             HHHHHHHHHhCCCEEEEc
Q 007718          469 HYFLQILAQIGRGYYDSA  486 (591)
Q Consensus       469 ~~lL~~LA~~~~G~~~~v  486 (591)
                      ..+++.||+.+||.|+.+
T Consensus       615 ~~~~~~lA~~~gg~y~~l  632 (633)
T TIGR02442       615 LGLAEDLARALGGEYVRL  632 (633)
T ss_pred             hhHHHHHHHhhCCeEEec
Confidence            789999999999999875

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins

Probab=99.34  E-value=7.1e-11  Score=111.58  Aligned_cols=144  Identities=13%  Similarity=0.156  Sum_probs=108.2

Q ss_pred             eEEEEEeCCcCCCc-----chHHHHHHHHHHHHH---hcCCCCeEEEEEeCC-ceEeeecCcccCCHHHHHHHHHHHhcC
Q 007718          327 DVVFLVDVSGSMQG-----VLLEQTKNALSASLS---KLNPQDSFNIIAFNG-ETHLFSSSMKLASQGTIINATQWLSSL  397 (591)
Q Consensus       327 ~ivfviD~SgSM~g-----~~i~~ak~al~~~l~---~L~~~d~f~Ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~l  397 (591)
                      .++|++|.|.||..     .+++.+|+++..++.   ...++++++|+.|++ .+....+.+  .+   ...+...++.+
T Consensus         5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT--~D---~~~~~~~L~~i   79 (187)
T cd01452           5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLT--ND---QGKILSKLHDV   79 (187)
T ss_pred             EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCC--CC---HHHHHHHHHhC
Confidence            47899999999985     589999999988762   335578999999999 787776543  23   45556667788


Q ss_pred             CCCCCCchHHHHHHHHHhhhcCCC--C-ccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC-CCHHHHH
Q 007718          398 VAGGGTNILLPLKQAIKLLSDTSE--S-IPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY-CNHYFLQ  473 (591)
Q Consensus       398 ~~~GgT~l~~aL~~a~~~l~~~~~--~-~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~-~~~~lL~  473 (591)
                      ..+|+|++..||+.|...|...+.  . .+.|+|++++...++..+.+.+++...    .+++|+.+|+|.. .|...|+
T Consensus        80 ~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk----~~I~v~vI~~G~~~~~~~~l~  155 (187)
T cd01452          80 QPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKK----NNVSVDIINFGEIDDNTEKLT  155 (187)
T ss_pred             CCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHH----cCCeEEEEEeCCCCCCHHHHH
Confidence            888999999999999999875533  3 366777877766676666666665543    3599999999964 4567777


Q ss_pred             HHHHhC
Q 007718          474 ILAQIG  479 (591)
Q Consensus       474 ~LA~~~  479 (591)
                      .+-+.-
T Consensus       156 ~~~~~~  161 (187)
T cd01452         156 AFIDAV  161 (187)
T ss_pred             HHHHHh
Confidence            776654

It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.

>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts

Probab=99.28  E-value=2e-10  Score=108.23  Aligned_cols=158  Identities=20%  Similarity=0.240  Sum_probs=113.2

Q ss_pred             ceEEEEEeCCcCCCcc----hHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHh-cC---
Q 007718          326 KDVVFLVDVSGSMQGV----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SL---  397 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~----~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~-~l---  397 (591)
                      ..|++|||.||||.+.    ..+.+.+-+..+..+|.++-.+.++.|+++...+.    ..+.++...-++.+. ++   
T Consensus         2 ArV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~----~vt~~~~~~~v~~~~~~~~~~   77 (200)
T PF10138_consen    2 ARVYLVLDISGSMRPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLP----DVTLDNYEGYVDELHAGLPDW   77 (200)
T ss_pred             cEEEEEEeCCCCCchhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCC----CcCHHHHHHHHHHHhcccccc
Confidence            3689999999999963    35555555555667888887899999999987653    456666665554443 22   


Q ss_pred             CCCCCCchHHHHHHHHHhhhcC-C-CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHH
Q 007718          398 VAGGGTNILLPLKQAIKLLSDT-S-ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQIL  475 (591)
Q Consensus       398 ~~~GgT~l~~aL~~a~~~l~~~-~-~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~L  475 (591)
                      ...|+|+...+|+.+++..... + ..+..|+|+|||.+++...+.+.+++.    ....+-+--+|+|.. +..+|+.|
T Consensus        78 ~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~~~~~~~~i~~a----s~~pifwqFVgiG~~-~f~fL~kL  152 (200)
T PF10138_consen   78 GRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDDRRAIEKLIREA----SDEPIFWQFVGIGDS-NFGFLEKL  152 (200)
T ss_pred             CCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccchHHHHHHHHhc----cCCCeeEEEEEecCC-cchHHHHh
Confidence            3448999999999999987643 2 235589999999999888887777665    234566777899987 58899999


Q ss_pred             HHhCC-----CEEEEcCCCCch
Q 007718          476 AQIGR-----GYYDSAYDPGSV  492 (591)
Q Consensus       476 A~~~~-----G~~~~v~~~~~l  492 (591)
                      ....|     ..++.+.+.+++
T Consensus       153 D~l~gR~vDNa~Ff~~~d~~~l  174 (200)
T PF10138_consen  153 DDLAGRVVDNAGFFAIDDIDEL  174 (200)
T ss_pred             hccCCcccCCcCeEecCCcccC
Confidence            88522     224455555444

>PRK10997 yieM hypothetical protein; Provisional

Probab=99.23  E-value=2.3e-10  Score=122.31  Aligned_cols=144  Identities=18%  Similarity=0.175  Sum_probs=106.6

Q ss_pred             CccCceEEEEEeCCcCCCcchHHHHHHHHHHHH-HhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007718          322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASL-SKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG  400 (591)
Q Consensus       322 ~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l-~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~  400 (591)
                      ......++++||+||||.|.+...||..+..+. -.+..++++.++.|++....+ + .  .....+.++.+++... .+
T Consensus       320 ~~~kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~-~-l--~~~~gl~~ll~fL~~~-f~  394 (487)
T PRK10997        320 EQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTY-E-L--TGPDGLEQAIRFLSQS-FR  394 (487)
T ss_pred             CCCCCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceee-c-c--CCccCHHHHHHHHHHh-cC
Confidence            346789999999999999988888887555444 367789999999999987653 1 1  2345677788888643 57


Q ss_pred             CCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCC-hhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718          401 GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGD-ERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ  473 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~-~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~  473 (591)
                      |||++..+|+.+++.+....-+...||++||+.... +....+.++....   ..+.|+|++.+|.+.+..+++
T Consensus       395 GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~---~~~~rf~~l~i~~~~~p~l~~  465 (487)
T PRK10997        395 GGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQR---QHQHRFHAVAMSAHGKPGIMR  465 (487)
T ss_pred             CCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHH---hcCcEEEEEEeCCCCCchHHH
Confidence            999999999999998865433445899999998643 4555555555432   135899999999876766543

>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=99.21  E-value=7.9e-11  Score=123.36  Aligned_cols=146  Identities=23%  Similarity=0.258  Sum_probs=107.3

Q ss_pred             ceEEEEEeCCcCCCcchHHHHHHHHHHHHH-hcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCc
Q 007718          326 KDVVFLVDVSGSMQGVLLEQTKNALSASLS-KLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN  404 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~-~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~  404 (591)
                      ..+++|||.||||.|.+...||..+.++++ .|.++-++-++.|++......   ...-..++.++++++...-++| ||
T Consensus       273 GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~e---l~~k~~~~~e~i~fL~~~f~GG-TD  348 (437)
T COG2425         273 GPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYE---LYEKKIDIEELIEFLSYVFGGG-TD  348 (437)
T ss_pred             CCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeee---ecCCccCHHHHHHHHhhhcCCC-CC
Confidence            679999999999999999999976666654 567788899999999543321   1122337888999887655555 99


Q ss_pred             hHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007718          405 ILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG  479 (591)
Q Consensus       405 l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~  479 (591)
                      +..||..|++.+.+.+-...-+++||||...-.......+.....   ....++|++-||.+... -|.+++...
T Consensus       349 ~~~~l~~al~~~k~~~~~~adiv~ITDg~~~~~~~~~~~v~e~~k---~~~~rl~aV~I~~~~~~-~l~~Isd~~  419 (437)
T COG2425         349 ITKALRSALEDLKSRELFKADIVVITDGEDERLDDFLRKVKELKK---RRNARLHAVLIGGYGKP-GLMRISDHI  419 (437)
T ss_pred             hHHHHHHHHHHhhcccccCCCEEEEeccHhhhhhHHHHHHHHHHH---HhhceEEEEEecCCCCc-ccceeeeee
Confidence            999999999998866545568999999997654444555554432   24589999999987433 445555443

>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family

Probab=99.21  E-value=6.1e-10  Score=110.84  Aligned_cols=169  Identities=15%  Similarity=0.155  Sum_probs=113.0

Q ss_pred             cCceEEEEEeCCcCCCcc-----hHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718          324 FRKDVVFLVDVSGSMQGV-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV  398 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~-----~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~  398 (591)
                      ..-+|+|+||.|.||...     .++ +|..+..+++.|. .++|+|+.|++++....|...+.+.   +.+.+.++.+.
T Consensus        59 r~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~Le-~g~vgVv~Fg~~~~~v~Plt~d~~~---~a~~~~l~~~~  133 (266)
T cd01460          59 RDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTLLE-VGQLGVCSFGEDVQILHPFDEQFSS---QSGPRILNQFT  133 (266)
T ss_pred             cCceEEEEEecchhcccccccccHHH-HHHHHHHHHHhCc-CCcEEEEEeCCCceEeCCCCCCchh---hHHHHHhCccc
Confidence            356899999999999742     344 7888888888887 5799999999999887766544333   55666677555


Q ss_pred             CC-CCCchHHHHHHHHHhhhcCC----CC--ccEEEEEecCCCCChhhHH-HHHHHHHhcCCCCCCeEEEEEcCCCC-CH
Q 007718          399 AG-GGTNILLPLKQAIKLLSDTS----ES--IPLIFLITDGTVGDERGIC-NEIKSYLTNTRSISPRICTFGVGLYC-NH  469 (591)
Q Consensus       399 ~~-GgT~l~~aL~~a~~~l~~~~----~~--~~~IillTDG~~~~~~~i~-~~v~~~~~~~~~~~~ri~t~GiG~~~-~~  469 (591)
                      .. +||++..+|..+.+.+....    ..  .+.+|++|||...+..... ..+++..    ..++.++.+++-+.. +.
T Consensus       134 f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~----e~~i~l~~I~ld~~~~~~  209 (266)
T cd01460         134 FQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAR----EQNVFVVFIIIDNPDNKQ  209 (266)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHH----HcCCeEEEEEEcCCCCCC
Confidence            55 99999999999999987541    11  2799999999943222222 2234332    235899999986541 11


Q ss_pred             ----------------HHHHHHHHhCCCEEEEcCCCCchHHHHHHHHH
Q 007718          470 ----------------YFLQILAQIGRGYYDSAYDPGSVDYRIRRFFT  501 (591)
Q Consensus       470 ----------------~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~  501 (591)
                                      .+-+.|-..+--.|..+.+.+++++.+...+.
T Consensus       210 SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~~~~~~lp~~l~~~lr  257 (266)
T cd01460         210 SILDIKVVSFKNDKSGVITPYLDEFPFPYYVIVRDLNQLPSVLSDALR  257 (266)
T ss_pred             CcccccccccCCCCccHHHHHHhcCCCCeEEEecChhHhHHHHHHHHH
Confidence                            12233334444556666666666665555444

The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.

>cd01458 vWA_ku Ku70/Ku80 N-terminal domain

Probab=99.04  E-value=4.2e-09  Score=103.27  Aligned_cols=140  Identities=17%  Similarity=0.198  Sum_probs=96.9

Q ss_pred             eEEEEEeCCcCCC-------cchHHHHHHHHHHHHHh---cCCCCeEEEEEeCCceEe----------eecCcccCCHHH
Q 007718          327 DVVFLVDVSGSMQ-------GVLLEQTKNALSASLSK---LNPQDSFNIIAFNGETHL----------FSSSMKLASQGT  386 (591)
Q Consensus       327 ~ivfviD~SgSM~-------g~~i~~ak~al~~~l~~---L~~~d~f~Ii~F~~~~~~----------~~~~~~~~~~~~  386 (591)
                      .++|+||+|.||.       .++++.+++++..++++   -.++|+++|+.|+++...          +.+ ....+.+.
T Consensus         3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~-l~~~~~~~   81 (218)
T cd01458           3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLD-LDTPGAER   81 (218)
T ss_pred             EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeec-CCCCCHHH
Confidence            5899999999994       26899999999999998   478999999999997421          122 22345556


Q ss_pred             HHHHHHHHhcC-C-------CCCCCchHHHHHHHHHhhhc--CCCCccEEEEEecCCCCCh--hhHHHHHHHHHhcCCCC
Q 007718          387 IINATQWLSSL-V-------AGGGTNILLPLKQAIKLLSD--TSESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSI  454 (591)
Q Consensus       387 ~~~a~~~i~~l-~-------~~GgT~l~~aL~~a~~~l~~--~~~~~~~IillTDG~~~~~--~~i~~~v~~~~~~~~~~  454 (591)
                      ++...+.++.- .       ..++|++..||..|.+++..  .+...+.|||+|||.....  ....+.+...+.+....
T Consensus        82 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~  161 (218)
T cd01458          82 VEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDK  161 (218)
T ss_pred             HHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence            66655554421 1       24789999999999999975  2345689999999986521  11112222222222334


Q ss_pred             CCeEEEEEcCCCC
Q 007718          455 SPRICTFGVGLYC  467 (591)
Q Consensus       455 ~~ri~t~GiG~~~  467 (591)
                      ++.+++||+|...
T Consensus       162 gI~i~~i~i~~~~  174 (218)
T cd01458         162 GIELELFPLSSPG  174 (218)
T ss_pred             CcEEEEEecCCCC
Confidence            6999999998764

The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.

>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain

Probab=98.99  E-value=9.9e-09  Score=97.46  Aligned_cols=171  Identities=17%  Similarity=0.223  Sum_probs=104.8

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCce-------EeeecCcccCCHHHHHH------
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGET-------HLFSSSMKLASQGTIIN------  389 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~f~Ii~F~~~~-------~~~~~~~~~~~~~~~~~------  389 (591)
                      ...-|.||||+||||.|.+++.|..++..+.+.|. -+..+.|+.|.+..       +.|...-.+..+.-+.+      
T Consensus        11 ~d~~VtlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~vy   90 (219)
T PF11775_consen   11 RDTVVTLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHIVY   90 (219)
T ss_pred             CCeEEEEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHHHH
Confidence            44567899999999999999988776666666664 36788999998873       11211111111222222      


Q ss_pred             ---------HHHHHh-cCCCC-CCCch-HHHHHHHHHhhhcCCCCccEEEEEecCCCCCh-------hhHHH-HHHHHHh
Q 007718          390 ---------ATQWLS-SLVAG-GGTNI-LLPLKQAIKLLSDTSESIPLIFLITDGTVGDE-------RGICN-EIKSYLT  449 (591)
Q Consensus       390 ---------a~~~i~-~l~~~-GgT~l-~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~-------~~i~~-~v~~~~~  449 (591)
                               +...+. -++.+ ...|+ ++||.+|.+.+.+.+...+.++++|||.|.+.       ...++ .+++.+.
T Consensus        91 k~a~~~wrraR~~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~  170 (219)
T PF11775_consen   91 KDADTPWRRARRNLGLMMREGLLKENIDGEALRWAAERLLARPEQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIA  170 (219)
T ss_pred             HhcCChhhhHHHhHHHHhhccccccCCcHHHHHHHHHHHHcCCccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHH
Confidence                     221111 11222 23444 78999999999888888899999999999632       22222 2222222


Q ss_pred             cCC-CCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHh
Q 007718          450 NTR-SISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAA  503 (591)
Q Consensus       450 ~~~-~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~  503 (591)
                      .-. ...+.+.++|||.++..+.         -.+..+.+.+++...+...+.++
T Consensus       171 ~ie~~~~Vel~aiGIg~D~~~yY---------~~~~~i~~~e~l~~~~~~~l~~l  216 (219)
T PF11775_consen  171 EIETRSDVELIAIGIGHDVSRYY---------RRAVTIDDVEELGGALFEQLARL  216 (219)
T ss_pred             HHhccCCcEEEEEEcCCCchhhc---------ccceecCCHHHHHHHHHHHHHHH
Confidence            211 2358899999998754421         13445677778877776666554

>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown

Probab=98.77  E-value=1.2e-07  Score=93.01  Aligned_cols=129  Identities=22%  Similarity=0.257  Sum_probs=79.2

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHh--cCCCC
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS--SLVAG  400 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~--~l~~~  400 (591)
                      ..|..+++++|+||||.+.. ...-..+..+....+   ++.++.|+++.....+....   .+..+++..+.  ....+
T Consensus        55 ~~~~~lvvl~DvSGSM~~~s-~~~l~~~~~l~~~~~---~~~~f~F~~~l~~vT~~l~~---~~~~~~l~~~~~~~~~~~  127 (222)
T PF05762_consen   55 RKPRRLVVLCDVSGSMAGYS-EFMLAFLYALQRQFR---RVRVFVFSTRLTEVTPLLRR---RDPEEALARLSALVQSFG  127 (222)
T ss_pred             CCCccEEEEEeCCCChHHHH-HHHHHHHHHHHHhCC---CEEEEEEeeehhhhhhhhcc---CCHHHHHHHHHhhccCCC
Confidence            34568999999999998621 112222333333333   88999999987655433221   12233443333  22356


Q ss_pred             CCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEE
Q 007718          401 GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFG  462 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~-~~~~i~~~v~~~~~~~~~~~~ri~t~G  462 (591)
                      |||++..+|+.+.+......-....+|++|||..+ +.....+.+++....    ..+++.+.
T Consensus       128 GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r----~~rviwLn  186 (222)
T PF05762_consen  128 GGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTNDPEPLAEELRRLRRR----GRRVIWLN  186 (222)
T ss_pred             CccHHHHHHHHHHHHhhcccccCcEEEEEecccccCChHHHHHHHHHHHHh----CCEEEEEC
Confidence            99999999999998875322245689999999544 445555555554332    35676664

It is found as part of a CO oxidising (Cox) system operon in several bacteria [].

>TIGR01651 CobT cobaltochelatase, CobT subunit

Probab=98.72  E-value=7.2e-08  Score=103.78  Aligned_cols=171  Identities=18%  Similarity=0.207  Sum_probs=101.9

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCceE-------eeecCcccCCH-----------
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETH-------LFSSSMKLASQ-----------  384 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~f~Ii~F~~~~~-------~~~~~~~~~~~-----------  384 (591)
                      ...-|.|+||+||||.+.++..|...+..+.+.|. .+..+-|+.|.+.+.       .|...-.+..+           
T Consensus       391 ~D~~V~LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~aw~gg~~re~w~~~g~p~~PgRlN~l~hiiy  470 (600)
T TIGR01651       391 RDTVVTLLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREKWLKAGKPAAPGRLNDLRHIIY  470 (600)
T ss_pred             CCcEEEEEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeecccccccccchHHHHhcCCCCCCcccchhhhhhh
Confidence            44567899999999999888877755545555554 367889999987631       11111111111           


Q ss_pred             ----HHHHHHHHHHhcC-CCC-CCCch-HHHHHHHHHhhhcCCCCccEEEEEecCCCCChh-------hHHH-HHHHHHh
Q 007718          385 ----GTIINATQWLSSL-VAG-GGTNI-LLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-------GICN-EIKSYLT  449 (591)
Q Consensus       385 ----~~~~~a~~~i~~l-~~~-GgT~l-~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-------~i~~-~v~~~~~  449 (591)
                          ..+..+...+..+ +.+ ..-|+ +.||.+|.+.|.+.+...+++++||||.|.+..       ..++ .++..+.
T Consensus       471 k~ad~~wr~~r~~l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~vi~  550 (600)
T TIGR01651       471 KSADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIARPEQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAVIE  550 (600)
T ss_pred             hccccchhhhccchhhhhhccccccCCchHHHHHHHHHHhcCcccceEEEEEeCCCcCCccccccCchhHHHHHHHHHHH
Confidence                0111111111101 111 11222 789999999998888888999999999996422       1222 2222222


Q ss_pred             cCCC-CCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHh
Q 007718          450 NTRS-ISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAA  503 (591)
Q Consensus       450 ~~~~-~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~  503 (591)
                      .-.. .++.+.++|||.++..+.         ..+..|.+.+++...|...+..+
T Consensus       551 ~~e~~~~vel~aigIg~Dv~r~Y---------~~~v~i~~~~eL~~~~~~qLa~L  596 (600)
T TIGR01651       551 EIETRSPVELLAIGIGHDVTRYY---------RRAVTIVDAEELAGAMTEQLAAL  596 (600)
T ss_pred             HHhccCCceEEEeeccccHHHHc---------cccceecCHHHHHHHHHHHHHHH
Confidence            2222 368999999999855433         33346777778877776655543

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex

Probab=98.64  E-value=1e-06  Score=83.42  Aligned_cols=165  Identities=18%  Similarity=0.221  Sum_probs=119.7

Q ss_pred             EEeCCcCCCc-----chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCc-eEeeecCcccCCHHHHHHHHHHHhcCCCCC
Q 007718          331 LVDVSGSMQG-----VLLEQTKNALSASLSKL---NPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVAGG  401 (591)
Q Consensus       331 viD~SgSM~g-----~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l~~~G  401 (591)
                      |||.|.+|..     +++....+++..|+...   +|-.+++|+...+. ++.+.+.  ..+.....+++..+.+..+.|
T Consensus         1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~l--sgn~~~h~~~L~~~~~~~~~G   78 (193)
T PF04056_consen    1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSEL--SGNPQEHIEALKKLRKLEPSG   78 (193)
T ss_pred             CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeec--CCCHHHHHHHHHHhccCCCCC
Confidence            6899999974     57888888888888754   56679999998876 5555432  345666666666666677889


Q ss_pred             CCchHHHHHHHHHhhhcCC-CCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007718          402 GTNILLPLKQAIKLLSDTS-ESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG  479 (591)
Q Consensus       402 gT~l~~aL~~a~~~l~~~~-~~~~~IillTDG~~~-~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~  479 (591)
                      ...|..||+.|...+...+ ...|.|+++.-...+ |+.++.+.++....    .++|+..||++.  .-+.++.|++.|
T Consensus        79 ~~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~di~~ti~~l~~----~~IrvsvI~laa--Ev~I~k~i~~~T  152 (193)
T PF04056_consen   79 EPSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPGDIHETIESLKK----ENIRVSVISLAA--EVYICKKICKET  152 (193)
T ss_pred             ChhHHHHHHHHHHHHhhCccccceEEEEEEeecccCCchhHHHHHHHHHH----cCCEEEEEEEhH--HHHHHHHHHHhh
Confidence            9999999999999997653 234566666644333 56667666666543    359999999987  456899999999


Q ss_pred             CCEEEEcCCCCchHHHHHHHHHHhccce
Q 007718          480 RGYYDSAYDPGSVDYRIRRFFTAASSVF  507 (591)
Q Consensus       480 ~G~~~~v~~~~~l~~~~~~~~~~~~~p~  507 (591)
                      +|.|..+-+.+.    +.+++.+...|.
T Consensus       153 ~G~y~V~lde~H----~~~lL~~~~~PP  176 (193)
T PF04056_consen  153 GGTYGVILDEDH----FKELLMEHVPPP  176 (193)
T ss_pred             CCEEEEecCHHH----HHHHHHhhCCCC
Confidence            999998877654    445555555443

This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent

>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=98.59  E-value=1.4e-06  Score=88.67  Aligned_cols=159  Identities=23%  Similarity=0.309  Sum_probs=110.3

Q ss_pred             ccCceEEEEEeCCcCCC--c--chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718          323 VFRKDVVFLVDVSGSMQ--G--VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV  398 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~--g--~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~  398 (591)
                      .....+++++|||.||.  |  .++.+.--|+..++..--++|.+.+|.|+..++..       +.+.       +..+.
T Consensus       461 rt~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrGD~l~~i~Fgr~A~~v-------~v~e-------Lt~l~  526 (652)
T COG4867         461 RTQAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRGDALQIIAFGRYARTV-------TAAE-------LTGLA  526 (652)
T ss_pred             hcccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCCcceEEEeccchhccc-------CHHH-------HhcCC
Confidence            34567899999999996  3  35555555666677666679999999999987653       2111       23333


Q ss_pred             C--CCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCC-----------------hhhHHHHHHHHHhcCCCCCCeEE
Q 007718          399 A--GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGD-----------------ERGICNEIKSYLTNTRSISPRIC  459 (591)
Q Consensus       399 ~--~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~-----------------~~~i~~~v~~~~~~~~~~~~ri~  459 (591)
                      .  .-|||+..||..|-..+...++..++|+++|||+++.                 +..+...++.. .+....++.+.
T Consensus       527 ~v~eqgTNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~~-d~~~r~G~q~t  605 (652)
T COG4867         527 GVYEQGTNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRGF-DDMARLGAQVT  605 (652)
T ss_pred             CccccccchHHHHHHHHHHHHhCcccCceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHHH-HHHHhccceee
Confidence            2  3689999999999998887777788999999999851                 22233333332 23333456677


Q ss_pred             EEEcCCCCC-HHHHHHHHHhCCCEEEEcCCCCchHHHHH
Q 007718          460 TFGVGLYCN-HYFLQILAQIGRGYYDSAYDPGSVDYRIR  497 (591)
Q Consensus       460 t~GiG~~~~-~~lL~~LA~~~~G~~~~v~~~~~l~~~~~  497 (591)
                      +|-+|.+.. ..|++++|+..+|..++ .+.+.+-..+.
T Consensus       606 ~FrLg~DpgL~~Fv~qva~rv~G~vv~-pdldglGaaVv  643 (652)
T COG4867         606 IFRLGSDPGLARFIDQVARRVQGRVVV-PDLDGLGAAVV  643 (652)
T ss_pred             EEeecCCHhHHHHHHHHHHHhCCeEEe-cCcchhhHHHH
Confidence            777777544 46899999999999875 45555654443

>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function

Probab=98.57  E-value=3.6e-07  Score=81.27  Aligned_cols=96  Identities=19%  Similarity=0.270  Sum_probs=66.7

Q ss_pred             EEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCchHH
Q 007718          328 VVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILL  407 (591)
Q Consensus       328 ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~l~~  407 (591)
                      +++++|+||||....+.+.-..+..+++..  +.++.|+.|+...+.....    ..  .......+ .+..+|||++..
T Consensus         1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~----~~--~~~~~~~~-~~~GgGGTdf~p   71 (126)
T PF09967_consen    1 IVVAIDTSGSISDEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVF----RS--LEDELRDI-KLKGGGGTDFRP   71 (126)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEE----ec--cccccccc-ccCCCCCCcchH
Confidence            478999999998877776666677777777  4579999999997653211    11  11111111 456679999999


Q ss_pred             HHHHHHHhhhcCCCCccEEEEEecCCCCC
Q 007718          408 PLKQAIKLLSDTSESIPLIFLITDGTVGD  436 (591)
Q Consensus       408 aL~~a~~~l~~~~~~~~~IillTDG~~~~  436 (591)
                      +++.+.+.    ......+|++|||..+.
T Consensus        72 vf~~~~~~----~~~~~~vi~fTDg~~~~   96 (126)
T PF09967_consen   72 VFEYLEEN----RPRPSVVIYFTDGEGWP   96 (126)
T ss_pred             HHHHHHhc----CCCCCEEEEEeCCCCCC
Confidence            99887654    23456788999999743

>KOG3768 consensus DEAD box RNA helicase [General function prediction only]

Probab=98.55  E-value=6.5e-07  Score=94.41  Aligned_cols=175  Identities=19%  Similarity=0.262  Sum_probs=118.0

Q ss_pred             EEEEEeCCcCCCc------chHHHHHHHHHHHHHhcC-----CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhc
Q 007718          328 VVFLVDVSGSMQG------VLLEQTKNALSASLSKLN-----PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS  396 (591)
Q Consensus       328 ivfviD~SgSM~g------~~i~~ak~al~~~l~~L~-----~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~  396 (591)
                      +.|++|+||||..      +.++.||.|+..|++.-.     -+||+-+++|..-.+.....    -.++-.-.++-|++
T Consensus         4 ~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~----~~~~~a~~~~eik~   79 (888)
T KOG3768|consen    4 FLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVA----CEKLGAVVIEEIKK   79 (888)
T ss_pred             EEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhH----HhhcccHHHHHHHh
Confidence            6799999999985      478999999999997532     38999999999876543221    23334445677889


Q ss_pred             CCCC-CCCchHHHHHHHHHhhhcC----------CCC------ccEEEEEecCCC-CChhhHH-------------HHHH
Q 007718          397 LVAG-GGTNILLPLKQAIKLLSDT----------SES------IPLIFLITDGTV-GDERGIC-------------NEIK  445 (591)
Q Consensus       397 l~~~-GgT~l~~aL~~a~~~l~~~----------~~~------~~~IillTDG~~-~~~~~i~-------------~~v~  445 (591)
                      +++. |.+.+..++..|+++|.-.          .++      .-.||+||||.- +....+-             ..+.
T Consensus        80 l~a~~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTDG~r~s~~~GV~~e~~Lpl~~p~pGse~T  159 (888)
T KOG3768|consen   80 LHAPYGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITDGGRYSGVAGVPIEFRLPLDPPFPGSEMT  159 (888)
T ss_pred             hcCccchhhhhHHHHHHhhhhhhhhhhhcccccccccCccccCceEEEEEecCCccccccCCceeEEeccCCCCCccccc
Confidence            9998 5566777777799988532          122      238999999931 1000000             0000


Q ss_pred             HHHhcCCCCCCeEEEEEc---C-----------CCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccceEE
Q 007718          446 SYLTNTRSISPRICTFGV---G-----------LYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLT  509 (591)
Q Consensus       446 ~~~~~~~~~~~ri~t~Gi---G-----------~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p~~~  509 (591)
                      +   +.-...-|+|++-+   |           -..|..-++.|.+.+||+.+.+.+...+.+.++.++.+...-++-
T Consensus       160 k---epFRWDQrlftlVlRiPgt~~~~~~qlt~Vp~Dds~IermCevTGGRSysV~Spr~lnqciesLvqkvQ~gVvv  234 (888)
T KOG3768|consen  160 K---EPFRWDQRLFTLVLRIPGTPYPTISQLTAVPIDDSVIERMCEVTGGRSYSVVSPRQLNQCIESLVQKVQYGVVV  234 (888)
T ss_pred             c---ccchhhhhhheeeEecCCCCCccHhhhcCCCCCchhhHHhhhhcCCceeeeeCHHHHHHHHHHHHHhhccCeEE
Confidence            0   00012245666644   2           134566799999999999999999999999999999886654443

>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]

Probab=98.45  E-value=6.4e-07  Score=94.04  Aligned_cols=177  Identities=16%  Similarity=0.148  Sum_probs=120.0

Q ss_pred             cCceEEEEEeCCcCCCcchHHHH-------HHHHHHHHHhcC-CCCeEEEEEeCCceEee--ecCcccCCHHHHHHHHHH
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQT-------KNALSASLSKLN-PQDSFNIIAFNGETHLF--SSSMKLASQGTIINATQW  393 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~a-------k~al~~~l~~L~-~~d~f~Ii~F~~~~~~~--~~~~~~~~~~~~~~a~~~  393 (591)
                      ..--+.+++|+|.||.. +++..       ++|++.+-..+. -++.+.+..|.+....|  .+.....+.......-..
T Consensus       445 ~Dla~TLLvD~S~St~a-~mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDes~~~~~~~R  523 (637)
T COG4548         445 HDLAFTLLVDVSASTDA-KMDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDESMGETVGPR  523 (637)
T ss_pred             ccceeEEEeecccchHH-HhhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeeccccccccccchh
Confidence            34567899999999974 55554       444444433332 27888889998876543  122233333333333444


Q ss_pred             HhcCCCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh-----hHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007718          394 LSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-----GICNEIKSYLTNTRSISPRICTFGVGLYCN  468 (591)
Q Consensus       394 i~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-----~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~  468 (591)
                      |..++++-.|.++.||+.|.+.+...+.+.+.+|++|||++++-+     .-+..-++++....+.++.+|.+-+....-
T Consensus       524 ImALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~eaRk~Gi~VF~Vtld~ea~  603 (637)
T COG4548         524 IMALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEARKSGIEVFNVTLDREAI  603 (637)
T ss_pred             heecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCcccccccccccchhhHHHHHHHHHhcCceEEEEEecchhh
Confidence            667889999999999999999988888889999999999997422     112222344444445678999998876644


Q ss_pred             HHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhc
Q 007718          469 HYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAAS  504 (591)
Q Consensus       469 ~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~  504 (591)
                      .++   -+..+.+.|.+|.+...++..+-.+++++.
T Consensus       604 ~y~---p~~fgqngYa~V~~v~~LP~~L~~lyrkL~  636 (637)
T COG4548         604 SYL---PALFGQNGYAFVERVAQLPGALPPLYRKLL  636 (637)
T ss_pred             hhh---HHHhccCceEEccchhhcchhHHHHHHHhc
Confidence            332   234466677889999999999988887753

>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=98.37  E-value=1.3e-05  Score=85.85  Aligned_cols=169  Identities=24%  Similarity=0.285  Sum_probs=126.7

Q ss_pred             CccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhc-CCCC
Q 007718          322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS-LVAG  400 (591)
Q Consensus       322 ~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~-l~~~  400 (591)
                      ...+.+.++++|+|+||.+..+..++.+...++..+.+.+.+.++.|........+...   ..+...+...+.. +.+.
T Consensus        34 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~  110 (399)
T COG2304          34 LLVPANLTLAIDTSGSMTGALLELAKSAAIELVNGLNPGDLLSIVTFAGSADVLIPPTG---ATNKESITAAIDQSLQAG  110 (399)
T ss_pred             cccCcceEEEeccCCCccchhHHHHHHHHHHHhcccCCCCceEEEEecCCcceecCccc---ccCHHHHHHHHhhhhccc
Confidence            45688999999999999998899999999999999999999999999996555443322   2334444555665 7888


Q ss_pred             CCCchHHHHHHHHHhhhcC--CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHh
Q 007718          401 GGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQI  478 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~  478 (591)
                      |.|.+..++..+++.+...  .+....+.+.|||..+........+...........+.+.++|+|.+.|..++..++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i~~~~~g~~~~~n~~~~~~~~~~  190 (399)
T COG2304         111 GATAVEASLSLAVELAAKALPRGTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGIVLDTLGLGDDVNEDELTGIAAA  190 (399)
T ss_pred             cccHHHHHHHHHHHHhhhcCCccceeeEeeeccCccccCCCCHHHHHHHhcccccCceEEEEEecccccchhhhhhhhhc
Confidence            9999999999998887653  45567899999988753211112222222222234689999999999999999999999


Q ss_pred             CCCEEEEcCCCCchH
Q 007718          479 GRGYYDSAYDPGSVD  493 (591)
Q Consensus       479 ~~G~~~~v~~~~~l~  493 (591)
                      ..|...++.......
T Consensus       191 ~~g~l~~~~~~~~~~  205 (399)
T COG2304         191 ANGNLAFIYLSSLSE  205 (399)
T ss_pred             cCcccccccCccccc
Confidence            999888777665444

>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium

Probab=98.32  E-value=1.9e-05  Score=78.51  Aligned_cols=148  Identities=15%  Similarity=0.179  Sum_probs=104.2

Q ss_pred             CceEEEEEeCCcCCC---------------cchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEe---eecCc-------
Q 007718          325 RKDVVFLVDVSGSMQ---------------GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHL---FSSSM-------  379 (591)
Q Consensus       325 ~~~ivfviD~SgSM~---------------g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~---~~~~~-------  379 (591)
                      ..++++-||.|+|-.               ....++|.+++..++....++..|-++.|+.....   .....       
T Consensus        31 ~~nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~GFGa~~~~~~~v~~~f~~~~~~p  110 (254)
T cd01459          31 ESNLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSESP  110 (254)
T ss_pred             eeeEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEeecccCCCCCccccccCCCCCCC
Confidence            447788888888743               14677888888888899998899999999986421   11110       


Q ss_pred             ccCCHHHHHHH-HHHHhcCCCCCCCchHHHHHHHHHhhhcCCC--CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCC
Q 007718          380 KLASQGTIINA-TQWLSSLVAGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISP  456 (591)
Q Consensus       380 ~~~~~~~~~~a-~~~i~~l~~~GgT~l~~aL~~a~~~l~~~~~--~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~  456 (591)
                      ....-+.+.++ .+.+.+++..|.|++...|+.+.+.......  ..-+++++|||.+++..++.+.+.++-    ...+
T Consensus       111 ~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i~D~~~t~~aIv~AS----~~Pl  186 (254)
T cd01459         111 ECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEITDMNETIKAIVEAS----KYPL  186 (254)
T ss_pred             cccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCcccHHHHHHHHHHHh----cCCe
Confidence            00111233223 3455677778999999999999887654322  244689999999999888877776552    3458


Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 007718          457 RICTFGVGLYCNHYFLQILAQ  477 (591)
Q Consensus       457 ri~t~GiG~~~~~~lL~~LA~  477 (591)
                      .|..+|+|+. +...|+.|-.
T Consensus       187 SIiiVGVGd~-~F~~M~~LD~  206 (254)
T cd01459         187 SIVIVGVGDG-PFDAMERLDD  206 (254)
T ss_pred             EEEEEEeCCC-ChHHHHHhcC
Confidence            8999999976 8888888865

They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.

>cd01468 trunk_domain trunk domain

Probab=98.26  E-value=5.1e-05  Score=75.48  Aligned_cols=162  Identities=20%  Similarity=0.179  Sum_probs=105.6

Q ss_pred             cCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhcC--CCCeEEEEEeCCceEeeecC--c---------------ccC-
Q 007718          324 FRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSS--M---------------KLA-  382 (591)
Q Consensus       324 ~~~~ivfviD~SgS-M~g~~i~~ak~al~~~l~~L~--~~d~f~Ii~F~~~~~~~~~~--~---------------~~~-  382 (591)
                      .|.-++||||+|.. ....-++.+++++...|+.|+  ++.+|+||+|++..+.+.-.  .               .+. 
T Consensus         2 ~pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p~~   81 (239)
T cd01468           2 QPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLPLP   81 (239)
T ss_pred             CCCEEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCCCc
Confidence            35678999999974 555579999999999999999  89999999999876543210  0               000 


Q ss_pred             ---------CHHHHHHHHHHHhcCC-----CCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCCh-----------
Q 007718          383 ---------SQGTIINATQWLSSLV-----AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDE-----------  437 (591)
Q Consensus       383 ---------~~~~~~~a~~~i~~l~-----~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~-----------  437 (591)
                               ..+.+.++++.|....     ...+..++.||+.|..++.... ..-.|++++.|.++..           
T Consensus        82 ~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-~gGkI~~f~sg~pt~GpG~l~~~~~~~  160 (239)
T cd01468          82 DRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF-AGGRIIVFQGGLPTVGPGKLKSREDKE  160 (239)
T ss_pred             CceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC-CCceEEEEECCCCCCCCCccccCcccc
Confidence                     0133444444444332     2255789999999999987642 1346788888887511           


Q ss_pred             --------------hhHHHHHHHHHhcCCCCCCeEEEEEcC-CCCCHHHHHHHHHhCCCEEEEcCCC
Q 007718          438 --------------RGICNEIKSYLTNTRSISPRICTFGVG-LYCNHYFLQILAQIGRGYYDSAYDP  489 (591)
Q Consensus       438 --------------~~i~~~v~~~~~~~~~~~~ri~t~GiG-~~~~~~lL~~LA~~~~G~~~~v~~~  489 (591)
                                    ....+.+...+.+   .++.+..|..+ ..++-..|..|++.+||..++..+.
T Consensus       161 ~~~~~~e~~~~~~a~~fY~~la~~~~~---~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v~~y~~f  224 (239)
T cd01468         161 PIRSHDEAQLLKPATKFYKSLAKECVK---SGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYDSF  224 (239)
T ss_pred             cCCCccchhcccccHHHHHHHHHHHHH---cCeEEEEEeccccccCHHHhhhhhhcCCceEEEeCCC
Confidence                          0122222222222   23444444444 3568888999999999998887765

COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.

>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]

Probab=98.20  E-value=2.9e-05  Score=76.81  Aligned_cols=169  Identities=15%  Similarity=0.248  Sum_probs=117.1

Q ss_pred             cCceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCc-eEeeecCcccCCHHHHHHHHHHH
Q 007718          324 FRKDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKL---NPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWL  394 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g-----~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i  394 (591)
                      .=+.+++|||+|.+|..     +++....+.+..|+..+   +|-.+++||.-.+. +..+..  ...+   .+.-++.+
T Consensus        59 iiRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~--ltgn---p~~hI~aL  133 (378)
T KOG2807|consen   59 IIRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTD--LTGN---PRIHIHAL  133 (378)
T ss_pred             hheeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHH--hcCC---HHHHHHHH
Confidence            34789999999999985     35666666777777655   45578898887655 333321  1123   33334445


Q ss_pred             hcCC-CCCCCchHHHHHHHHHhhhcCCCCc-c-EEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHH
Q 007718          395 SSLV-AGGGTNILLPLKQAIKLLSDTSESI-P-LIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYF  471 (591)
Q Consensus       395 ~~l~-~~GgT~l~~aL~~a~~~l~~~~~~~-~-~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~l  471 (591)
                      ..+. ..|...|.+||+.|.+.+...++.. | ++|+++-=...|+.++.+.+.+....    ++|+..||+..  ....
T Consensus       134 ~~~~~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPgdi~~tI~~lk~~----kIRvsvIgLsa--Ev~i  207 (378)
T KOG2807|consen  134 KGLTECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPGDIYETIDKLKAY----KIRVSVIGLSA--EVFI  207 (378)
T ss_pred             hcccccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcccHHHHHHHHHhh----CeEEEEEeech--hHHH
Confidence            5555 6688899999999999998765443 4 44555544445778888887776543    59999999875  4567


Q ss_pred             HHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccce
Q 007718          472 LQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVF  507 (591)
Q Consensus       472 L~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p~  507 (591)
                      .+.|+.+|+|.|..+-|..    -++.++.+...|.
T Consensus       208 cK~l~kaT~G~Y~V~lDe~----HlkeLl~e~~~Pp  239 (378)
T KOG2807|consen  208 CKELCKATGGRYSVALDEG----HLKELLLEHTHPP  239 (378)
T ss_pred             HHHHHHhhCCeEEEEeCHH----HHHHHHHhcCCCC
Confidence            8999999999998887754    4456666665553

>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []

Probab=98.11  E-value=9.9e-05  Score=73.62  Aligned_cols=163  Identities=21%  Similarity=0.230  Sum_probs=99.5

Q ss_pred             CceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhcC--CCCeEEEEEeCCceEeeecC-----------------------
Q 007718          325 RKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSS-----------------------  378 (591)
Q Consensus       325 ~~~ivfviD~SgS-M~g~~i~~ak~al~~~l~~L~--~~d~f~Ii~F~~~~~~~~~~-----------------------  378 (591)
                      |-.++||||+|.. ....-++.++++++..|+.++  ++.+|+|++|++..+.+.-.                       
T Consensus         3 pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~~~   82 (243)
T PF04811_consen    3 PPVYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPLPD   82 (243)
T ss_dssp             --EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSSTSS
T ss_pred             CCEEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCCcc
Confidence            4569999999954 445688999999999999999  89999999999987654210                       


Q ss_pred             --cc--cCCHHHHHHHHHHHhcCCC-----CCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh-----------
Q 007718          379 --MK--LASQGTIINATQWLSSLVA-----GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-----------  438 (591)
Q Consensus       379 --~~--~~~~~~~~~a~~~i~~l~~-----~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-----------  438 (591)
                        ..  .-..+.+.++++.|..+..     ..+..++.||+.|..++..... .-.|++++-|.++...           
T Consensus        83 ~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~-gGkI~~F~s~~pt~G~Gg~l~~~~~~~  161 (243)
T PF04811_consen   83 GLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNT-GGKILVFTSGPPTYGPGGSLKKREDSS  161 (243)
T ss_dssp             SSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS--EEEEEEESS---SSSTTSS-SBTTSC
T ss_pred             cEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhcccc-CCEEEEEeccCCCCCCCceeccccccc
Confidence              11  1124567777777764322     2467899999999999873222 2356666666653111           


Q ss_pred             ----------------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCC
Q 007718          439 ----------------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPG  490 (591)
Q Consensus       439 ----------------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~  490 (591)
                                      +..+.+...+.+. +..+.+|.++. ..++-..|..|++.|||..++..+..
T Consensus       162 ~~~~~~~~~~~~~~~~~fY~~la~~~~~~-~isvDlf~~~~-~~~~l~tl~~l~~~TGG~l~~y~~f~  227 (243)
T PF04811_consen  162 HYDTEKEKALLLPPANEFYKKLAEECSKQ-GISVDLFVFSS-DYVDLATLGPLARYTGGSLYYYPNFN  227 (243)
T ss_dssp             CCCHCTTHHCHSHSSSHHHHHHHHHHHHC-TEEEEEEEECS-S--SHHHHTHHHHCTT-EEEEETTTT
T ss_pred             ccccccchhhhccccchHHHHHHHHHHhc-CCEEEEEeecC-CCCCcHhHHHHHHhCceeEEEeCCCC
Confidence                            1233333333221 23345555543 35688889999999999998887765

COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....

>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles

Probab=98.04  E-value=0.00029  Score=70.26  Aligned_cols=158  Identities=21%  Similarity=0.227  Sum_probs=101.0

Q ss_pred             CceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhcCCC---CeEEEEEeCCceEeee--cC---------------cccC-
Q 007718          325 RKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLNPQ---DSFNIIAFNGETHLFS--SS---------------MKLA-  382 (591)
Q Consensus       325 ~~~ivfviD~SgS-M~g~~i~~ak~al~~~l~~L~~~---d~f~Ii~F~~~~~~~~--~~---------------~~~~-  382 (591)
                      |--++||||+|-. ....-++.++++++..|+.++++   .+|+||+|++..+.+.  ..               ..+. 
T Consensus         3 pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P~~   82 (244)
T cd01479           3 PAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLPLP   82 (244)
T ss_pred             CCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCCCC
Confidence            5579999999864 33336899999999999999976   9999999999875431  10               0000 


Q ss_pred             ---------CHHHHHHHHHHHhcC---CCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh------------
Q 007718          383 ---------SQGTIINATQWLSSL---VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER------------  438 (591)
Q Consensus       383 ---------~~~~~~~a~~~i~~l---~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~------------  438 (591)
                               ..+.+..+++.|..+   ....++.++.||+.|..++....   -.|++++.|.++.+.            
T Consensus        83 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~G---GkIi~f~s~~pt~GpG~l~~~~~~~~~  159 (244)
T cd01479          83 DGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKETG---GKIIVFQSSLPTLGAGKLKSREDPKLL  159 (244)
T ss_pred             cceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhcC---CEEEEEeCCCCCcCCcccccCcccccc
Confidence                     113344444444322   12356789999999999997432   357778778764110            


Q ss_pred             -------------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcC
Q 007718          439 -------------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAY  487 (591)
Q Consensus       439 -------------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~  487 (591)
                                   ...+.+...+.+ .++.+.+|++. +..++-..|..|++.|||..++..
T Consensus       160 ~~~~e~~~~~p~~~fY~~la~~~~~-~~isvDlF~~~-~~~~dla~l~~l~~~TGG~v~~y~  219 (244)
T cd01479         160 STDKEKQLLQPQTDFYKKLALECVK-SQISVDLFLFS-NQYVDVATLGCLSRLTGGQVYYYP  219 (244)
T ss_pred             CchhhhhhcCcchHHHHHHHHHHHH-cCeEEEEEEcc-CcccChhhhhhhhhhcCceEEEEC
Confidence                         112222222222 23344455443 345788889999999999988776

The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24

>PRK05325 hypothetical protein; Provisional

Probab=97.96  E-value=0.00017  Score=75.54  Aligned_cols=162  Identities=15%  Similarity=0.146  Sum_probs=102.3

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCC-CeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCC
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQ-DSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGT  403 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~-d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT  403 (591)
                      ..=+++++|+||||....-+.||..-..+-.-|.-+ .++-++.-.++...+     .++.++      +. .....|||
T Consensus       222 ~AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y~~vEvvFI~H~t~Ak-----EVdEee------FF-~~~esGGT  289 (401)
T PRK05325        222 QAVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKYENVEVVFIRHHTEAK-----EVDEEE------FF-YSRESGGT  289 (401)
T ss_pred             cEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCcee-----EcCHHH------cc-ccCCCCCe
Confidence            345678999999999887788887644333333321 456666666655432     233322      11 34566999


Q ss_pred             chHHHHHHHHHhhhcC---CCCccEEEEEecCCCCC--hhhHHHHHHHHHhcCCCCCCeEEEEE-cCCCC--CHHHHHHH
Q 007718          404 NILLPLKQAIKLLSDT---SESIPLIFLITDGTVGD--ERGICNEIKSYLTNTRSISPRICTFG-VGLYC--NHYFLQIL  475 (591)
Q Consensus       404 ~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~~--~~~i~~~v~~~~~~~~~~~~ri~t~G-iG~~~--~~~lL~~L  475 (591)
                      -+..|++.+.+.+...   ....-.++-.|||.-++  .....+.+++.+..    .++.|+.+ |+...  +..+.+..
T Consensus       290 ~vSSA~~l~~eIi~~rYpp~~wNIY~f~aSDGDNw~~D~~~~~~ll~~~llp----~~~~f~Y~Ev~~~~~~~~~l~~~y  365 (401)
T PRK05325        290 IVSSAYKLALEIIEERYPPAEWNIYAFQASDGDNWSSDNPRCVELLREELLP----VCNYFAYIEVTPRAYRHQTLWREY  365 (401)
T ss_pred             EehHHHHHHHHHHHhhCCHhHCeeEEEEcccCCCcCCCCHHHHHHHHHHHHH----HhhheEEEEecCCCCCchHHHHHH
Confidence            9999999999998753   23455889999999753  34455666644421    14555553 44432  55666666


Q ss_pred             HHhCCC----EEEEcCCCCchHHHHHHHHHH
Q 007718          476 AQIGRG----YYDSAYDPGSVDYRIRRFFTA  502 (591)
Q Consensus       476 A~~~~G----~~~~v~~~~~l~~~~~~~~~~  502 (591)
                      ......    ....+.+.+++-..+..+|.+
T Consensus       366 ~~i~~~~~~f~~~~I~~~~dIyp~~r~lf~k  396 (401)
T PRK05325        366 ERLQDTFPNFAMQRIRDKEDIYPVFRELFKK  396 (401)
T ss_pred             HHhhccCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence            555443    345577888888888888754

>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

Probab=97.93  E-value=5.4e-05  Score=78.26  Aligned_cols=166  Identities=18%  Similarity=0.227  Sum_probs=100.6

Q ss_pred             ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCceE-------eeecCcccCCHHHHHHHHHHHh--
Q 007718          326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETH-------LFSSSMKLASQGTIINATQWLS--  395 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~f~Ii~F~~~~~-------~~~~~~~~~~~~~~~~a~~~i~--  395 (591)
                      .-|.+|||.||||.|.+|..|-.....+...|. .+..+-|..|-+.+.       .|...-.+.++.-+......+.  
T Consensus       414 tvVtlviDnSGSMrGRpItvAatcAdilArtLeRcgVk~eIlGFTT~awkGg~sre~wlk~Gkp~~pgrlndlrhiiyks  493 (620)
T COG4547         414 TVVTLVIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTKAWKGGQSRETWLKRGKPAFPGRLNDLRHIIYKS  493 (620)
T ss_pred             hhheeeeccCCCcCCcceehhHHHHHHHHHHHHHcCCceEEeeeeeccccCCccHHHHHhcCCCCCchhhhhHHHHHHhc
Confidence            346799999999999999988887777777774 477888888876431       2222222333322222222111  


Q ss_pred             ----------cCCC--C-C--CCch-HHHHHHHHHhhhcCCCCccEEEEEecCCCCCh-------hhHH----HHHHHHH
Q 007718          396 ----------SLVA--G-G--GTNI-LLPLKQAIKLLSDTSESIPLIFLITDGTVGDE-------RGIC----NEIKSYL  448 (591)
Q Consensus       396 ----------~l~~--~-G--gT~l-~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~-------~~i~----~~v~~~~  448 (591)
                                |+..  . |  .-|+ +++|-+|-+.+-.++...+++++||||.+-+.       .+.+    ..+.+.+
T Consensus       494 AdaPwrRARrnlGlmmreglLkeNiDGEal~wah~rl~gRpEqrkIlmmiSDGAPvddstlsvnpGnylerHLRaVieeI  573 (620)
T COG4547         494 ADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPEQRKILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEI  573 (620)
T ss_pred             cCCHHHHHHhhcchhhhcchhhccCChHHHHHHHHHHhcChhhceEEEEecCCCcccccccccCCchHHHHHHHHHHHHH
Confidence                      1111  1 1  1233 57888888888777777889999999998432       2222    2222333


Q ss_pred             hcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHH
Q 007718          449 TNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTA  502 (591)
Q Consensus       449 ~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~  502 (591)
                      ..  ...+.+.+||||.++..+.-+..        . +.+.+++...|...+..
T Consensus       574 Et--rSpveLlAIGighDvtRyYrrav--------t-iVdaeeL~gamteqLa~  616 (620)
T COG4547         574 ET--RSPVELLAIGIGHDVTRYYRRAV--------T-IVDAEELAGAMTEQLAA  616 (620)
T ss_pred             hc--CCchhheeeecccccchhhhhhe--------e-EecHHHhchHHHHHHHH
Confidence            22  23578999999999877664432        2 33456666555554443

>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles

Probab=97.90  E-value=0.0011  Score=66.87  Aligned_cols=162  Identities=17%  Similarity=0.093  Sum_probs=102.2

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeee--cC----------cccCC---------
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFS--SS----------MKLAS---------  383 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~--~~----------~~~~~---------  383 (591)
                      |--++||||+|-.  ...++.+|+++...|+.|+++.+|+||+|++.++.+.  ..          ...++         
T Consensus         3 pp~~vFviDvs~~--~~el~~l~~sl~~~L~~lP~~a~VGlITfd~~V~~~~L~~~~~~~~~vf~g~~~~~~~~~~~~l~   80 (267)
T cd01478           3 PPVFLFVVDTCMD--EEELDALKESLIMSLSLLPPNALVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQIQDMLG   80 (267)
T ss_pred             CCEEEEEEECccC--HHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCcCceeeeccCCccCCHHHHHHHhc
Confidence            4569999999774  5679999999999999999999999999999975432  10          00000         


Q ss_pred             -----------------------------------HHHHHHHHHHHhcC----C--CCCCCchHHHHHHHHHhhhcC-CC
Q 007718          384 -----------------------------------QGTIINATQWLSSL----V--AGGGTNILLPLKQAIKLLSDT-SE  421 (591)
Q Consensus       384 -----------------------------------~~~~~~a~~~i~~l----~--~~GgT~l~~aL~~a~~~l~~~-~~  421 (591)
                                                         ...+..+++.|...    .  .+....++.||+.|..++... +.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~~~~~~  160 (267)
T cd01478          81 LGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEACFPN  160 (267)
T ss_pred             cccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHHhhcCC
Confidence                                               12333333333321    1  124567899999999998732 11


Q ss_pred             CccEEEEEecCCCCChh------------------------------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHH
Q 007718          422 SIPLIFLITDGTVGDER------------------------------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYF  471 (591)
Q Consensus       422 ~~~~IillTDG~~~~~~------------------------------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~l  471 (591)
                      .--.|++++-|-++...                              +..+.+...+. ..+..+.+|+++. +.++-..
T Consensus       161 ~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~-~~~vsvDlF~~s~-d~vglae  238 (267)
T cd01478         161 TGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLA-ANGHAVDIFAGCL-DQVGLLE  238 (267)
T ss_pred             CCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHH-hCCeEEEEEeccc-cccCHHH
Confidence            22356777777653100                              01111111111 1235566776653 4578899


Q ss_pred             HHHHHHhCCCEEEEcCCCC
Q 007718          472 LQILAQIGRGYYDSAYDPG  490 (591)
Q Consensus       472 L~~LA~~~~G~~~~v~~~~  490 (591)
                      |..|++.|||..++..+..
T Consensus       239 m~~l~~~TGG~v~~~~~f~  257 (267)
T cd01478         239 MKVLVNSTGGHVVLSDSFT  257 (267)
T ss_pred             HHHHHHhcCcEEEEeCCcc
Confidence            9999999999988876654

The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24

>PLN00162 transport protein sec23; Provisional

Probab=97.75  E-value=0.0097  Score=68.81  Aligned_cols=176  Identities=17%  Similarity=0.103  Sum_probs=110.7

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeee--c----------CcccCCH------
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFS--S----------SMKLASQ------  384 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~--~----------~~~~~~~------  384 (591)
                      ..|--++||||+|-  ....++..|+++...|+.|+++.+|+||+|++.++.+.  .          +...++.      
T Consensus       122 ~~pp~fvFvID~s~--~~~~l~~lk~sl~~~L~~LP~~a~VGlITF~s~V~~~~L~~~~~~~~~Vf~g~k~~t~~~l~~~  199 (761)
T PLN00162        122 PSPPVFVFVVDTCM--IEEELGALKSALLQAIALLPENALVGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILEQ  199 (761)
T ss_pred             CCCcEEEEEEecch--hHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCCCcceEEecCCccCCHHHHHHH
Confidence            45678999999984  45678999999999999999999999999999875432  0          0001111      


Q ss_pred             --------------------------------------HHHHHHHHHHhcCC---C---CCCCchHHHHHHHHHhhhcC-
Q 007718          385 --------------------------------------GTIINATQWLSSLV---A---GGGTNILLPLKQAIKLLSDT-  419 (591)
Q Consensus       385 --------------------------------------~~~~~a~~~i~~l~---~---~GgT~l~~aL~~a~~~l~~~-  419 (591)
                                                            ..+..+++.|....   +   .....++.||+.|..++... 
T Consensus       200 l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~~  279 (761)
T PLN00162        200 LGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACV  279 (761)
T ss_pred             hccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhcc
Confidence                                                  23444444444332   1   13466899999999988632 


Q ss_pred             CCCccEEEEEecCCCCChh------------------------------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCH
Q 007718          420 SESIPLIFLITDGTVGDER------------------------------GICNEIKSYLTNTRSISPRICTFGVGLYCNH  469 (591)
Q Consensus       420 ~~~~~~IillTDG~~~~~~------------------------------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~  469 (591)
                      ++..-.|++++-|-++.+.                              ...+.+...+.+ .++.+.+|+++. +.++-
T Consensus       280 ~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~-~gisvDlF~~s~-dqvgl  357 (761)
T PLN00162        280 PGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVA-QGHVLDVFACSL-DQVGV  357 (761)
T ss_pred             CCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHH-cCceEEEEEccc-cccCH
Confidence            1222356666667654110                              011111111111 245566776654 45788


Q ss_pred             HHHHHHHHhCCCEEEEcCCCCc--hHHHHHHHHHH
Q 007718          470 YFLQILAQIGRGYYDSAYDPGS--VDYRIRRFFTA  502 (591)
Q Consensus       470 ~lL~~LA~~~~G~~~~v~~~~~--l~~~~~~~~~~  502 (591)
                      ..|+.+++.|||..+...+.+.  +.+.+.+++.+
T Consensus       358 aem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~~r  392 (761)
T PLN00162        358 AEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFER  392 (761)
T ss_pred             HHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHhcc
Confidence            8999999999999887666543  44445555553

>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56

Probab=97.71  E-value=0.00071  Score=71.55  Aligned_cols=162  Identities=16%  Similarity=0.164  Sum_probs=96.4

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCC-CeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCC
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQ-DSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGT  403 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~-d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT  403 (591)
                      ..=+++++|+||||...+-..||.....+..-|..+ .++-++...++...+     .++.++      +. ....+|||
T Consensus       246 ~AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y~~Ve~vfI~H~t~A~-----EVdEe~------FF-~~~esGGT  313 (421)
T PF04285_consen  246 NAVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKYENVEIVFIRHHTEAK-----EVDEEE------FF-HSRESGGT  313 (421)
T ss_pred             cEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceE-----EecHHH------hc-ccCCCCCe
Confidence            345678999999999877778887654443333321 234444444443321     123221      11 34566999


Q ss_pred             chHHHHHHHHHhhhcC---CCCccEEEEEecCCCC--ChhhHHHHHHHHHhcCCCCCCeEEEEE-cCCCCC---HHHHHH
Q 007718          404 NILLPLKQAIKLLSDT---SESIPLIFLITDGTVG--DERGICNEIKSYLTNTRSISPRICTFG-VGLYCN---HYFLQI  474 (591)
Q Consensus       404 ~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~--~~~~i~~~v~~~~~~~~~~~~ri~t~G-iG~~~~---~~lL~~  474 (591)
                      -+..|++.+.+++...   ....-.++-+|||.-+  |.....+.+.+.+..    .++.|+++ |+....   ...++.
T Consensus       314 ~vSSA~~l~~~ii~erypp~~wNiY~~~~SDGDN~~~D~~~~~~ll~~~llp----~~~~f~Y~Ei~~~~~~~~~~~~~~  389 (421)
T PF04285_consen  314 RVSSAYELALEIIEERYPPSDWNIYVFHASDGDNWSSDNERCVELLEEELLP----VCNYFGYGEITQPGRHSSWREYEE  389 (421)
T ss_pred             EehHHHHHHHHHHHhhCChhhceeeeEEcccCccccCCCHHHHHHHHHHHHH----hcCeEEEEEeccCccchHHHHHHH
Confidence            9999999999998753   2344588999999975  334455666633321    14555543 331212   234555


Q ss_pred             HHHhCCCE-EEEcCCCCchHHHHHHHHHH
Q 007718          475 LAQIGRGY-YDSAYDPGSVDYRIRRFFTA  502 (591)
Q Consensus       475 LA~~~~G~-~~~v~~~~~l~~~~~~~~~~  502 (591)
                      +.....-. ...|.+.+++...+..+|.+
T Consensus       390 ~~~~~~~f~~~~i~~~~di~~~~r~~f~~  418 (421)
T PF04285_consen  390 LKESHDNFAMVRIREKEDIYPVFRELFKK  418 (421)
T ss_pred             HhhcCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence            54443332 34577788888888888865

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].

>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length

Probab=97.67  E-value=0.0032  Score=60.09  Aligned_cols=175  Identities=18%  Similarity=0.175  Sum_probs=109.9

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHH------hcCC----CCeEEEEEeCCc--eEeeecCcccCCHHHHHHHHH
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLS------KLNP----QDSFNIIAFNGE--THLFSSSMKLASQGTIINATQ  392 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~------~L~~----~d~f~Ii~F~~~--~~~~~~~~~~~~~~~~~~a~~  392 (591)
                      ..++++.+|+|+||....+..-++.+...|.      .+..    .-.+.++.|++.  .....+=..-.+.++.+.+..
T Consensus         3 dlaLvLavDvS~SVD~~E~~lQ~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~a~A~   82 (205)
T PF06707_consen    3 DLALVLAVDVSGSVDADEYRLQREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAEAFAA   82 (205)
T ss_pred             cceeeeeeeccCCCCHHHHHHHHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHHHHHH
Confidence            4578999999999998777766666655442      2221    346777888873  333333334456778888877


Q ss_pred             HHhcCC--CCCCCchHHHHHHHHHhhhcCCC--CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007718          393 WLSSLV--AGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN  468 (591)
Q Consensus       393 ~i~~l~--~~GgT~l~~aL~~a~~~l~~~~~--~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~  468 (591)
                      .|....  ..++|.|..||..+..++.+.+.  ..+.|=+-.||..|.........+.....   .++.|..+.|+....
T Consensus        83 ~l~~~~r~~~~~Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~---~GitINgL~I~~~~~  159 (205)
T PF06707_consen   83 RLRAAPRRFGGRTAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVA---AGITINGLAILDDDP  159 (205)
T ss_pred             HHHhCCCCCCCCchHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCccHHHHHHHHH---CCeEEeeeEecCCCC
Confidence            787553  34779999999999999987543  34566677899987664444444544432   358888888875432


Q ss_pred             -------HHHHHHHHHhCCCEE-EEcCCCCchHHHHHH-HHHHh
Q 007718          469 -------HYFLQILAQIGRGYY-DSAYDPGSVDYRIRR-FFTAA  503 (591)
Q Consensus       469 -------~~lL~~LA~~~~G~~-~~v~~~~~l~~~~~~-~~~~~  503 (591)
                             .++-+.+- .|.|.| ..+.+.++..+.|.+ ++.++
T Consensus       160 ~~~~~L~~yy~~~VI-gGpgAFV~~a~~~~df~~AirrKL~rEi  202 (205)
T PF06707_consen  160 FGGADLDAYYRRCVI-GGPGAFVETARGFEDFAEAIRRKLIREI  202 (205)
T ss_pred             CccccHHHHHhhhcc-cCCCceEEEcCCHHHHHHHHHHHHHHHh
Confidence                   23323222 244433 445555666666544 44443

The function of this family is unknown.

>TIGR02877 spore_yhbH sporulation protein YhbH

Probab=97.65  E-value=0.0012  Score=68.22  Aligned_cols=159  Identities=14%  Similarity=0.135  Sum_probs=91.0

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCC-CeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCC
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQ-DSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG  402 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~-d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~Gg  402 (591)
                      ...=+++++|+||||....-..||..-..+-.-|.-+ .++-++.-.++...+     .++.++.      . .....||
T Consensus       201 s~AV~fc~MDvSGSM~~~~K~lak~ff~~ly~FL~~~Y~~VeivFI~H~t~Ak-----EVdEeeF------F-~~~EsGG  268 (371)
T TIGR02877       201 SNAVVIAMMDTSGSMGQFKKYIARSFFFWMVKFLRTKYENVEICFISHHTEAK-----EVTEEEF------F-HKGESGG  268 (371)
T ss_pred             CcEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCeeE-----EcCHHHh------c-ccCCCCC
Confidence            3445678999999999877777887644333333321 366666666665442     2343321      1 3455699


Q ss_pred             CchHHHHHHHHHhhhcC---CCCccEEEEEecCCCC--ChhhHHHHHHHHHhcCCCCCCeEEEEE-cCC-CCCHHHHHHH
Q 007718          403 TNILLPLKQAIKLLSDT---SESIPLIFLITDGTVG--DERGICNEIKSYLTNTRSISPRICTFG-VGL-YCNHYFLQIL  475 (591)
Q Consensus       403 T~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~--~~~~i~~~v~~~~~~~~~~~~ri~t~G-iG~-~~~~~lL~~L  475 (591)
                      |-+..|++.+.+.+...   ....-..+-.|||.-+  |.....+.+++.+..     ++.|+.| |+. .....+....
T Consensus       269 T~vSSA~~l~~eII~~rYpp~~wNIY~f~aSDGDNw~~D~~~c~~ll~~llp~-----~~~f~Y~Ei~~~~~~~~l~~~y  343 (371)
T TIGR02877       269 TYCSSGYKKALEIIDERYNPARYNIYAFHFSDGDNLTSDNERAVKLVRKLLEV-----CNLFGYGEIMPYGYSNTLKNKF  343 (371)
T ss_pred             eEehHHHHHHHHHHHhhCChhhCeeEEEEcccCCCccCCcHHHHHHHHHHHHh-----hheEEEEEecCCCCcchHHHHH
Confidence            99999999999998753   2334578999999975  334455666654321     3455543 333 2223333222


Q ss_pred             HH-hCCCE--EEEcCCCCchHHHHHHH
Q 007718          476 AQ-IGRGY--YDSAYDPGSVDYRIRRF  499 (591)
Q Consensus       476 A~-~~~G~--~~~v~~~~~l~~~~~~~  499 (591)
                      .. .....  ...+.+.+++-..+..+
T Consensus       344 ~~~i~~~~f~~~~I~~~~dIyp~~r~l  370 (371)
T TIGR02877       344 KNEIKDPNFVPLIIRDKEDLYPALKKF  370 (371)
T ss_pred             HhhhcCCCeEEEEeCCHHHHHHHHHHh
Confidence            22 11222  23455556665555544

This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.

>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.54  E-value=0.00043  Score=70.50  Aligned_cols=108  Identities=22%  Similarity=0.289  Sum_probs=67.0

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC--CC
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV--AG  400 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~--~~  400 (591)
                      ..+..+++++|+||||++-  ...---+...+.+..  .++.+..|++........+   ...+.+.|++.+..-.  .+
T Consensus       216 ~~~~~lvvL~DVSGSm~~y--s~~~L~l~hAl~q~~--~R~~~F~F~TRLt~vT~~l---~~rD~~~Al~~~~a~v~dw~  288 (395)
T COG3552         216 RRKPPLVVLCDVSGSMSGY--SRIFLHLLHALRQQR--SRVHVFLFGTRLTRVTHML---RERDLEDALRRLSAQVKDWD  288 (395)
T ss_pred             cCCCCeEEEEecccchhhh--HHHHHHHHHHHHhcc--cceeEEEeechHHHHHHHh---ccCCHHHHHHHHHhhccccc
Confidence            3567899999999999752  211112222233333  4566899999865543332   2445566666666333  24


Q ss_pred             CCCchHHHHHHHHHhhhcC-CCCccEEEEEecCCCCCh
Q 007718          401 GGTNILLPLKQAIKLLSDT-SESIPLIFLITDGTVGDE  437 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~~-~~~~~~IillTDG~~~~~  437 (591)
                      |||.|++++..-++..... -.....|+++|||-..+.
T Consensus       289 ggTrig~tl~aF~~~~~~~~L~~gA~VlilsDg~drd~  326 (395)
T COG3552         289 GGTRIGNTLAAFLRRWHGNVLSGGAVVLILSDGLDRDD  326 (395)
T ss_pred             CCcchhHHHHHHHccccccccCCceEEEEEecccccCC
Confidence            9999999987655542221 123358999999998654

>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins

Probab=97.48  E-value=0.00052  Score=74.71  Aligned_cols=104  Identities=19%  Similarity=0.276  Sum_probs=78.0

Q ss_pred             ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCC-eEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCc
Q 007718          326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQD-SFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN  404 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d-~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~  404 (591)
                      .+.+.|.|+||||.|.+++.+. +|..++..+..+. +=.+|+|+++.+..     ..+..++.+-++++.++..++.||
T Consensus       341 ~n~iav~DvSGSM~~~pm~vai-aLgll~ae~~~~pf~~~~ITFs~~P~~~-----~i~g~~l~ekv~~~~~~~wg~nTn  414 (534)
T PF11443_consen  341 ENCIAVCDVSGSMSGPPMDVAI-ALGLLIAELNKGPFKGRFITFSENPQLH-----KIKGDTLREKVRFIRRMDWGMNTN  414 (534)
T ss_pred             cceEEEEecCCccCccHHHHHH-HHHHHHHHhcccccCCeEEeecCCceEE-----EecCCCHHHHHHHHHhCCcccCCc
Confidence            6899999999999999887665 4556667765432 22489999997764     234447888888899999999999


Q ss_pred             hHHHHHHHHHhhhcC----CCCccEEEEEecCCCC
Q 007718          405 ILLPLKQAIKLLSDT----SESIPLIFLITDGTVG  435 (591)
Q Consensus       405 l~~aL~~a~~~l~~~----~~~~~~IillTDG~~~  435 (591)
                      +..+++..+......    .+=++.+|++||=+.+
T Consensus       415 ~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD  449 (534)
T PF11443_consen  415 FQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEFD  449 (534)
T ss_pred             HHHHHHHHHHHHHHcCCChHHCCceEEEEeccccc
Confidence            999998888765443    1235689999987754

>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.0051  Score=68.55  Aligned_cols=178  Identities=19%  Similarity=0.186  Sum_probs=112.6

Q ss_pred             EEEEEecCCCCCCCccCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhcC--CCCeEEEEEeCCceEeeecC-------
Q 007718          309 FCLYLFPGKSQSRKVFRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSS-------  378 (591)
Q Consensus       309 f~~~~~P~~~~~~~~~~~~ivfviD~SgS-M~g~~i~~ak~al~~~l~~L~--~~d~f~Ii~F~~~~~~~~~~-------  378 (591)
                      +.=++.|.+-.-+.+.|.-++||+|+|-| |+..-++.+++++..-|+.|+  ++.+|++++|++..+.+.-.       
T Consensus       278 ~vE~iAP~eYmlR~P~Pavy~FliDVS~~a~ksG~L~~~~~slL~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp~  357 (887)
T KOG1985|consen  278 VVEFIAPSEYMLRPPQPAVYVFLIDVSISAIKSGYLETVARSLLENLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQPQ  357 (887)
T ss_pred             eEEEecCcccccCCCCCceEEEEEEeehHhhhhhHHHHHHHHHHHhhhcCCCCCcceEEEEEeeceeeEEecCCCcCCCc
Confidence            44467788776677888999999999965 554578999999999999998  78899999999986543210       


Q ss_pred             ------------------cc--cCCHHHHHHHHHHHhcCCC---CCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCC
Q 007718          379 ------------------MK--LASQGTIINATQWLSSLVA---GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG  435 (591)
Q Consensus       379 ------------------~~--~~~~~~~~~a~~~i~~l~~---~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~  435 (591)
                                        ++  ....++++.+++.+..+-.   .-+..++.||+.|+.++....|  + |+++.-+.++
T Consensus       358 mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~~GG--r-i~vf~s~lPn  434 (887)
T KOG1985|consen  358 MMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGSTGG--R-ISVFQSTLPN  434 (887)
T ss_pred             eeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhhcCC--e-EEEEeccCCC
Confidence                              00  0112445555555554322   2566899999999999876433  3 4444444443


Q ss_pred             Ch---------------hhH-------HHHHHHHHhcCCCCCCeEEEEEcC-CCCCHHHHHHHHHhCCCEEEEcCCC
Q 007718          436 DE---------------RGI-------CNEIKSYLTNTRSISPRICTFGVG-LYCNHYFLQILAQIGRGYYDSAYDP  489 (591)
Q Consensus       436 ~~---------------~~i-------~~~v~~~~~~~~~~~~ri~t~GiG-~~~~~~lL~~LA~~~~G~~~~v~~~  489 (591)
                      -+               .+.       ...-|+......+.++.|--|-+. .+.|-.-|..|++.+||..++....
T Consensus       435 lG~G~L~~rEdp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~f  511 (887)
T KOG1985|consen  435 LGAGKLKPREDPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPSF  511 (887)
T ss_pred             CCccccccccccccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCceeEEccCC
Confidence            10               000       011233322222333443333333 4567788999999999987765443

>PTZ00395 Sec24-related protein; Provisional

Probab=97.46  E-value=0.03  Score=65.91  Aligned_cols=225  Identities=17%  Similarity=0.115  Sum_probs=131.7

Q ss_pred             CccCceEEEEEeCCc-CCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCceEeee--cC-------------------
Q 007718          322 KVFRKDVVFLVDVSG-SMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETHLFS--SS-------------------  378 (591)
Q Consensus       322 ~~~~~~ivfviD~Sg-SM~g~~i~~ak~al~~~l~~L~-~~d~f~Ii~F~~~~~~~~--~~-------------------  378 (591)
                      ++.|-.++||||+|- |+...-+..+-++++..|+.++ ++.+|+||+|++..+-|.  +.                   
T Consensus       949 ~p~PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQM 1028 (1560)
T PTZ00395        949 NMLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVKCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQV 1028 (1560)
T ss_pred             CCCCCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCCCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCceE
Confidence            456778999999995 5555567888889999998886 578999999999864221  10                   


Q ss_pred             ---------cccC-----------CHHHHHHHHHHHhcCC---CCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCC
Q 007718          379 ---------MKLA-----------SQGTIINATQWLSSLV---AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG  435 (591)
Q Consensus       379 ---------~~~~-----------~~~~~~~a~~~i~~l~---~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~  435 (591)
                               .++.           ..+.++.+++.|..+-   ...+..++.||+.|+.++....+.-++++|.+ ..++
T Consensus      1029 LVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~GGGGKIiVF~S-SLPn 1107 (1560)
T PTZ00395       1029 IVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERNGLGSICMFYT-TTPN 1107 (1560)
T ss_pred             EeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcCCCceEEEEEc-CCCC
Confidence                     0111           1234555555555432   23567899999999999976443334555554 4442


Q ss_pred             Ch--------------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCC--CHHHHHHHHHhCCCEEEEcCCCC---
Q 007718          436 DE--------------------RGICNEIKSYLTNTRSISPRICTFGVGLYC--NHYFLQILAQIGRGYYDSAYDPG---  490 (591)
Q Consensus       436 ~~--------------------~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~--~~~lL~~LA~~~~G~~~~v~~~~---  490 (591)
                      ..                    ....+.+...+.+ ..+.+.+|.+.- .++  +-..|-.|++.|||..++.....   
T Consensus      1108 iGpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~ECsk-~qISVDLFLfSs-qYvDVDVATLg~Lsr~TGGqlyyYPnFna~r 1185 (1560)
T PTZ00395       1108 CGIGAIKELKKDLQENFLEVKQKIFYDSLLLDLYA-FNISVDIFIISS-NNVRVCVPSLQYVAQNTGGKILFVENFLWQK 1185 (1560)
T ss_pred             CCCCcccccccccccccccccchHHHHHHHHHHHh-cCCceEEEEccC-cccccccccccchhcccceeEEEeCCCcccc
Confidence            10                    1112222222222 234556666532 223  34568899999999987765542   


Q ss_pred             chHHHHHHHHHHhcc-ceEE--eEEEEecCCCcceeeeC-------------CCCCCcCCCCeEEEEEEEeCCCC
Q 007718          491 SVDYRIRRFFTAASS-VFLT--NMTLETSKHLNSLELFP-------------SHIPDFCLECPLIVSGRYSGNFG  549 (591)
Q Consensus       491 ~l~~~~~~~~~~~~~-p~~~--~v~l~~~~~~~~~~v~P-------------~~i~~l~~g~~l~v~g~~~~~~~  549 (591)
                      +-.....++...+.. +..-  -++++...++.....+.             -.+|.+-.++.+.+.-++.++..
T Consensus      1186 D~~KL~~DL~r~LTre~iGyEAVMRVRCS~GLrVs~fyG~GnnF~s~rStDLLaLP~Id~DqSfaVeLk~DEkL~ 1260 (1560)
T PTZ00395       1186 DYKEIYMNIMDTLTSEDIAYCCELKLRYSHHMSVKKLFCCNNNFNSIISVDTIKIPKIRHDQTFAFLLNYSDISE 1260 (1560)
T ss_pred             cHHHHHHHHHHHhhccceeeEEEEEEECCCCeEEEEEeccCCccccccccccccccccCCCceEEEEEEeccccC
Confidence            122233344444443 3332  34555545543333331             23677778888888888876543

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.40  E-value=0.0033  Score=67.70  Aligned_cols=150  Identities=17%  Similarity=0.218  Sum_probs=105.2

Q ss_pred             cCceEEEEEeCCcCCCc---------------chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceE------e-e----ec
Q 007718          324 FRKDVVFLVDVSGSMQG---------------VLLEQTKNALSASLSKLNPQDSFNIIAFNGETH------L-F----SS  377 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g---------------~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~------~-~----~~  377 (591)
                      ...++++-||-+.|-..               ...++|..++-..|+...++.+|--..||....      . |    .+
T Consensus       284 ~~lnf~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~  363 (529)
T KOG1327|consen  284 EQLNFTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNP  363 (529)
T ss_pred             ceeeeEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhcccCCCCccccccccccCCCCcccccceeecCCC
Confidence            45778888888888432               467888888888888888899999999998821      1 1    00


Q ss_pred             Cccc-CCHHHHHHH-HHHHhcCCCCCCCchHHHHHHHHHhhhcCC---CCccEEEEEecCCCCChhhHHHHHHHHHhcCC
Q 007718          378 SMKL-ASQGTIINA-TQWLSSLVAGGGTNILLPLKQAIKLLSDTS---ESIPLIFLITDGTVGDERGICNEIKSYLTNTR  452 (591)
Q Consensus       378 ~~~~-~~~~~~~~a-~~~i~~l~~~GgT~l~~aL~~a~~~l~~~~---~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~  452 (591)
                      .-.. ..-+.+-+| .+.+.+++..|.|++..-|..+.+...+..   ...-+++++|||.+++..++.+.+-++    .
T Consensus       364 ~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~qY~VLlIitDG~vTdm~~T~~AIV~A----S  439 (529)
T KOG1327|consen  364 EDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAGQYHVLLIITDGVVTDMKETRDAIVSA----S  439 (529)
T ss_pred             CCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCCcceEEEEEEeCCccccHHHHHHHHHhh----c
Confidence            0000 112233333 344557788899999999999988876543   333478999999999987776665544    3


Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHh
Q 007718          453 SISPRICTFGVGLYCNHYFLQILAQI  478 (591)
Q Consensus       453 ~~~~ri~t~GiG~~~~~~lL~~LA~~  478 (591)
                      .....|.-+|+|+. +...|+.|-..
T Consensus       440 ~lPlSIIiVGVGd~-df~~M~~lD~d  464 (529)
T KOG1327|consen  440 DLPLSIIIVGVGDA-DFDMMRELDGD  464 (529)
T ss_pred             cCCeEEEEEEeCCC-CHHHHHHhhcC
Confidence            45688999999954 88888888544

>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region)

Probab=97.34  E-value=0.011  Score=62.19  Aligned_cols=187  Identities=16%  Similarity=0.128  Sum_probs=107.2

Q ss_pred             eEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEe-ee-------
Q 007718          308 IFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHL-FS-------  376 (591)
Q Consensus       308 ~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~-~~-------  376 (591)
                      .|.+.+.+.     +..|.|++||+|.|+||.. .++.+|+....+.+.|   ..+-|+++-+|-+.... +.       
T Consensus        87 ~f~~~~~~a-----~~yPvDLYyLMDlS~SM~d-dl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l  160 (423)
T smart00187       87 NFTLTVRQA-----EDYPVDLYYLMDLSYSMKD-DLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKL  160 (423)
T ss_pred             EEEEEEEec-----ccCccceEEEEeCCccHHH-HHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHh
Confidence            455555443     3468999999999999974 7888888777666554   56788998888775310 00       


Q ss_pred             --c---------------CcccCCHHHHHHHHHHHhcCCCCCCCch----HHHHHHHH---HhhhcCCCCccEEEEEecC
Q 007718          377 --S---------------SMKLASQGTIINATQWLSSLVAGGGTNI----LLPLKQAI---KLLSDTSESIPLIFLITDG  432 (591)
Q Consensus       377 --~---------------~~~~~~~~~~~~a~~~i~~l~~~GgT~l----~~aL~~a~---~~l~~~~~~~~~IillTDG  432 (591)
                        |               ...+.| ++..+..+.+++...+|+-+-    ..||-.|.   +.+.=+++..+.+||.||+
T Consensus       161 ~~PC~~~~~~c~p~f~f~~~L~LT-~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa  239 (423)
T smart00187      161 ENPCPNYNLTCEPPYGFKHVLSLT-DDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDA  239 (423)
T ss_pred             cCCCcCCCCCcCCCcceeeeccCC-CCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCC
Confidence              0               001222 355666666776666655442    23333332   1111124567899999998


Q ss_pred             CCC---C----------------------------hhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCC
Q 007718          433 TVG---D----------------------------ERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRG  481 (591)
Q Consensus       433 ~~~---~----------------------------~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G  481 (591)
                      ...   |                            .-..+..+.+.+.+..  -..||++- ..  ...+.+.|+..=.|
T Consensus       240 ~fH~AGDGkLaGIv~PNDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~n--I~~IFAVT-~~--~~~~Y~~Ls~lipg  314 (423)
T smart00187      240 GFHFAGDGKLAGIVQPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENN--INPIFAVT-KK--QVSLYKELSALIPG  314 (423)
T ss_pred             CccccCCcceeeEecCCCCcceeCCCCCcCccCcCCCCCHHHHHHHHHhcC--ceEEEEEc-cc--chhHHHHHHHhcCc
Confidence            753   0                            0012344454444321  14577762 12  23355777766666


Q ss_pred             EEEEc--CCCCchHHHHHHHHHHhccc
Q 007718          482 YYDSA--YDPGSVDYRIRRFFTAASSV  506 (591)
Q Consensus       482 ~~~~v--~~~~~l~~~~~~~~~~~~~p  506 (591)
                      ...-+  .|.+.+-+.+.+.+.++.+.
T Consensus       315 s~vg~Ls~DSsNIv~LI~~aY~~i~S~  341 (423)
T smart00187      315 SSVGVLSEDSSNVVELIKDAYNKISSR  341 (423)
T ss_pred             ceeeecccCcchHHHHHHHHHHhhceE
Confidence            55432  45566777777777776543

Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).

>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway

Probab=97.25  E-value=0.0014  Score=64.44  Aligned_cols=107  Identities=21%  Similarity=0.294  Sum_probs=62.2

Q ss_pred             EEEEEeCCcCCCc------chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEee-------------ecCcccCCHH
Q 007718          328 VVFLVDVSGSMQG------VLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLF-------------SSSMKLASQG  385 (591)
Q Consensus       328 ivfviD~SgSM~g------~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~-------------~~~~~~~~~~  385 (591)
                      ++|+||+|.||..      ..++.+.+++..++.+.   .+.|.++|+.||++...-             .+ +...+.+
T Consensus         2 ~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~-l~~~~~~   80 (224)
T PF03731_consen    2 TVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQP-LDPPSAE   80 (224)
T ss_dssp             EEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEE-CC--BHH
T ss_pred             EEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeec-CCccCHH
Confidence            7999999999983      25888888888877654   457999999999774321             11 1222333


Q ss_pred             HHHHHHHHHhc-------CCCCCCCchHHHHHHHHHhhhc--C--CCCccEEEEEecCCCC
Q 007718          386 TIINATQWLSS-------LVAGGGTNILLPLKQAIKLLSD--T--SESIPLIFLITDGTVG  435 (591)
Q Consensus       386 ~~~~a~~~i~~-------l~~~GgT~l~~aL~~a~~~l~~--~--~~~~~~IillTDG~~~  435 (591)
                      .+....+.+..       .......++..||-.|..++..  .  +-..+.|+|+||+..-
T Consensus        81 ~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p  141 (224)
T PF03731_consen   81 RLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGP  141 (224)
T ss_dssp             HHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SST
T ss_pred             HHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCC
Confidence            44333322222       1122445799999999998874  2  2345789999998753

This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.

>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines

Probab=97.18  E-value=0.0056  Score=55.73  Aligned_cols=120  Identities=16%  Similarity=0.198  Sum_probs=85.3

Q ss_pred             chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceE---ee---ecCc------ccCCHH-HHHHHHHHHhcCCCCCCCchHH
Q 007718          341 VLLEQTKNALSASLSKLNPQDSFNIIAFNGETH---LF---SSSM------KLASQG-TIINATQWLSSLVAGGGTNILL  407 (591)
Q Consensus       341 ~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~---~~---~~~~------~~~~~~-~~~~a~~~i~~l~~~GgT~l~~  407 (591)
                      ...++|-.++..+|.....+..|.+..||....   ..   ++..      .-..-+ -++.-.+.+.+++..|-|++..
T Consensus        11 N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GPT~fap   90 (146)
T PF07002_consen   11 NPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGPTNFAP   90 (146)
T ss_pred             CHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCCccHHH
Confidence            467889999999999998888999999997632   11   1110      001122 2333345566788889999999


Q ss_pred             HHHHHHHhhhc---CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcC
Q 007718          408 PLKQAIKLLSD---TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVG  464 (591)
Q Consensus       408 aL~~a~~~l~~---~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG  464 (591)
                      -|+.|.+....   ....--+++++|||..+|..+..+.+.+.-    ...+.|..+|+|
T Consensus        91 iI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D~~~T~~aIv~AS----~~PlSIIiVGVG  146 (146)
T PF07002_consen   91 IINHAAKIAKQSNQNGQQYFILLILTDGQITDMEETIDAIVEAS----KLPLSIIIVGVG  146 (146)
T ss_pred             HHHHHHHHHhhhccCCceEEEEEEecccccccHHHHHHHHHHHc----cCCeEEEEEEeC
Confidence            99999988763   223334789999999999888877766552    345789999987

Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].

>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.07  Score=50.56  Aligned_cols=134  Identities=16%  Similarity=0.194  Sum_probs=89.5

Q ss_pred             ceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHh-c--CCCCeEEEEEeCC-ceEeeecCcccCCHHHHHHHHHHHhc
Q 007718          326 KDVVFLVDVSGSMQG-----VLLEQTKNALSASLSK-L--NPQDSFNIIAFNG-ETHLFSSSMKLASQGTIINATQWLSS  396 (591)
Q Consensus       326 ~~ivfviD~SgSM~g-----~~i~~ak~al~~~l~~-L--~~~d~f~Ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~  396 (591)
                      -..+++||.|--|..     ++++.-|+++..+... +  +|...++|++..+ .++.+....     ...-..+..+..
T Consensus         4 Eatmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T-----~d~gkils~lh~   78 (259)
T KOG2884|consen    4 EATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLT-----SDRGKILSKLHG   78 (259)
T ss_pred             ceEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeecc-----ccchHHHHHhcC
Confidence            347899999988863     5889999999887643 4  3567999999988 667665432     123345677889


Q ss_pred             CCCCCCCchHHHHHHHHHhhhcCCCC---ccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007718          397 LVAGGGTNILLPLKQAIKLLSDTSES---IPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN  468 (591)
Q Consensus       397 l~~~GgT~l~~aL~~a~~~l~~~~~~---~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~  468 (591)
                      ++..|+-++..+|+.|.-.|..+.+.   .|.|+|+..-....+.+.....++...    .++.|-.|-+|...+
T Consensus        79 i~~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk----~~Vaidii~FGE~~~  149 (259)
T KOG2884|consen   79 IQPHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKK----NKVAIDIINFGEAEN  149 (259)
T ss_pred             CCcCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHh----cCeeEEEEEeccccc
Confidence            99999999999999887777665332   345555532222344555555555433    236666666775443

>TIGR00627 tfb4 transcription factor tfb4

Probab=96.76  E-value=0.05  Score=54.88  Aligned_cols=167  Identities=14%  Similarity=0.147  Sum_probs=97.7

Q ss_pred             ceEEEEEeCCcCCCc--------chHHHHHHHHHHHHH---hcCCCCeEEEEEeCCce-EeeecCcc-------------
Q 007718          326 KDVVFLVDVSGSMQG--------VLLEQTKNALSASLS---KLNPQDSFNIIAFNGET-HLFSSSMK-------------  380 (591)
Q Consensus       326 ~~ivfviD~SgSM~g--------~~i~~ak~al~~~l~---~L~~~d~f~Ii~F~~~~-~~~~~~~~-------------  380 (591)
                      .-+++|||++.--+|        ..+..+-+++..|++   .+....++.||+..+.. +.+.+...             
T Consensus         3 slL~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~   82 (279)
T TIGR00627         3 SLLVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKR   82 (279)
T ss_pred             cEEEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCcccccccccccccc
Confidence            347889999876552        245555566655654   24567799999886553 33323210             


Q ss_pred             ----------cCCHHHHHHHHHHHhcCC----CCCCCchHHHHHHHHHhhhcC-------CCCccEEEEEecCCCCChhh
Q 007718          381 ----------LASQGTIINATQWLSSLV----AGGGTNILLPLKQAIKLLSDT-------SESIPLIFLITDGTVGDERG  439 (591)
Q Consensus       381 ----------~~~~~~~~~a~~~i~~l~----~~GgT~l~~aL~~a~~~l~~~-------~~~~~~IillTDG~~~~~~~  439 (591)
                                ..+..-+++..+.++...    ..+.|.|..||..|+-.++..       ..-..+|++++-+. +...+
T Consensus        83 ~~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~-~~~~q  161 (279)
T TIGR00627        83 LRELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITP-DMALQ  161 (279)
T ss_pred             ccchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCC-CchHH
Confidence                      000011222223333211    225677899999998887542       12234676666543 33333


Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHH
Q 007718          440 ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDY  494 (591)
Q Consensus       440 i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~  494 (591)
                      ....+ +.+....+.+++|.+++++...+..+|++++..|||.|..+.+.+.+.+
T Consensus       162 Yi~~m-n~Ifaaqk~~I~Idv~~L~~e~~~~~lqQa~~~TgG~Y~~~~~~~~L~q  215 (279)
T TIGR00627       162 YIPLM-NCIFSAQKQNIPIDVVSIGGDFTSGFLQQAADITGGSYLHVKKPQGLLQ  215 (279)
T ss_pred             HHHHH-HHHHHHHHcCceEEEEEeCCccccHHHHHHHHHhCCEEeccCCHhHHHH
Confidence            33222 2222223456999999998765688999999999999998887665443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]

Probab=96.69  E-value=0.023  Score=56.27  Aligned_cols=170  Identities=16%  Similarity=0.180  Sum_probs=104.0

Q ss_pred             CceEEEEEeCCcCCCcchHHHHH-----HHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhc
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTK-----NALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS  396 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak-----~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~  396 (591)
                      =+.+++++|+|.+|....+.-.+     +-+..++-.+   +|-.+++|+...+....+... ...   |.+.-+..+.+
T Consensus        87 iRhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a~~~s~-~~g---npq~hi~~lkS  162 (421)
T COG5151          87 IRHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCAKYTSS-MDG---NPQAHIGQLKS  162 (421)
T ss_pred             hheeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHHHHhhh-cCC---CHHHHHHHhhc
Confidence            47899999999999864332222     2222222222   345678888877664332222 223   33444555554


Q ss_pred             CC-CCCCCchHHHHHHHHHhhhcC-CCCcc-EEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718          397 LV-AGGGTNILLPLKQAIKLLSDT-SESIP-LIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ  473 (591)
Q Consensus       397 l~-~~GgT~l~~aL~~a~~~l~~~-~~~~~-~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~  473 (591)
                      +. ..|.-.|..||+.|...+... ....| ++|++..=...|+..+.+.+.+.+..    .+|+..+|+...  -.+.+
T Consensus       163 ~rd~~gnfSLqNaLEmar~~l~~~~~H~trEvLiifgS~st~DPgdi~~tid~Lv~~----~IrV~~igL~ae--vaicK  236 (421)
T COG5151         163 KRDCSGNFSLQNALEMARIELMKNTMHGTREVLIIFGSTSTRDPGDIAETIDKLVAY----NIRVHFIGLCAE--VAICK  236 (421)
T ss_pred             ccccCCChhHHhHHHHhhhhhcccccccceEEEEEEeecccCCCccHHHHHHHHHhh----ceEEEEEeehhH--HHHHH
Confidence            44 458888999999985444433 22234 34444333345777787777776543    489999988654  46788


Q ss_pred             HHHHhC----CCEEEEcCCCCchHHHHHHHHHHhccceE
Q 007718          474 ILAQIG----RGYYDSAYDPGSVDYRIRRFFTAASSVFL  508 (591)
Q Consensus       474 ~LA~~~----~G~~~~v~~~~~l~~~~~~~~~~~~~p~~  508 (591)
                      .|..++    .|.|..+-+..    -+..++.++..|.-
T Consensus       237 eickaTn~~~e~~y~v~vde~----Hl~el~~E~~~P~~  271 (421)
T COG5151         237 EICKATNSSTEGRYYVPVDEG----HLSELMRELSHPTD  271 (421)
T ss_pred             HHHhhcCcCcCceeEeeecHH----HHHHHHHhcCCCCC
Confidence            888887    78887766643    45567777766643

>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.64  E-value=0.18  Score=56.90  Aligned_cols=224  Identities=15%  Similarity=0.159  Sum_probs=129.7

Q ss_pred             ccCceEEEEEeCCc--CCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecC-------------------
Q 007718          323 VFRKDVVFLVDVSG--SMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSS-------------------  378 (591)
Q Consensus       323 ~~~~~ivfviD~Sg--SM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~-------------------  378 (591)
                      ..|-.++|+||+|-  .|.| -...+-++++.+|..|+   ++.+++|++|+...+.|-..                   
T Consensus       415 p~ppafvFmIDVSy~Ai~~G-~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvfv  493 (1007)
T KOG1984|consen  415 PKPPAFVFMIDVSYNAISNG-AVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVFV  493 (1007)
T ss_pred             CCCceEEEEEEeehhhhhcc-hHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeeccccccc
Confidence            45778999999984  4555 45667788888888876   47899999999986533210                   


Q ss_pred             ------ccc--CCHHHHHHHHHHHhcCCCC-CC--CchHHHHHHHHHhhhcCCCCccEEEEE------------------
Q 007718          379 ------MKL--ASQGTIINATQWLSSLVAG-GG--TNILLPLKQAIKLLSDTSESIPLIFLI------------------  429 (591)
Q Consensus       379 ------~~~--~~~~~~~~a~~~i~~l~~~-Gg--T~l~~aL~~a~~~l~~~~~~~~~Iill------------------  429 (591)
                            .+.  .+..-++.+++.|..+-.+ +-  |-+..+|+.|+..+...+ .-+.+++.                  
T Consensus       494 Pf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~-gGKl~vF~s~Lpt~g~g~kl~~r~D~  572 (1007)
T KOG1984|consen  494 PFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAAD-GGKLFVFHSVLPTAGAGGKLSNRDDR  572 (1007)
T ss_pred             ccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccC-CceEEEEecccccccCcccccccchh
Confidence                  011  1123455566666655544 33  457899999998887643 22333332                  


Q ss_pred             ----ecCCCC---ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCch---HHHHHHH
Q 007718          430 ----TDGTVG---DERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSV---DYRIRRF  499 (591)
Q Consensus       430 ----TDG~~~---~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l---~~~~~~~  499 (591)
                          ||++-+   -.......+.+...+. +..+.+|.+-- ..+|...|-.+.+.+||..+..+.....   ...+.++
T Consensus       573 ~l~~t~kek~l~~pq~~~y~~LA~e~v~~-g~svDlF~t~~-ayvDvAtlg~v~~~TgG~vy~Y~~F~a~~D~~rl~nDL  650 (1007)
T KOG1984|consen  573 RLIGTDKEKNLLQPQDKTYTTLAKEFVES-GCSVDLFLTPN-AYVDVATLGVVPALTGGQVYKYYPFQALTDGPRLLNDL  650 (1007)
T ss_pred             hhhcccchhhccCcchhHHHHHHHHHHHh-CceEEEEEccc-ceeeeeeecccccccCceeEEecchhhcccHHHHHHHH
Confidence                222211   0112233333332221 34566666522 2346666777788999998776654322   3445556


Q ss_pred             HHHhccceEEeEEEEe--cCCCcceeee-------C--CCCCCcCCCCeEEEEEEEeCCCCc
Q 007718          500 FTAASSVFLTNMTLET--SKHLNSLELF-------P--SHIPDFCLECPLIVSGRYSGNFGD  550 (591)
Q Consensus       500 ~~~~~~p~~~~v~l~~--~~~~~~~~v~-------P--~~i~~l~~g~~l~v~g~~~~~~~~  550 (591)
                      ...+..+.--++.++.  ..++...+-+       |  -.++.|=.+..+.|--++.++.++
T Consensus       651 ~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkLq~  712 (1007)
T KOG1984|consen  651 VRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKLQD  712 (1007)
T ss_pred             HHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEEEEeccccccC
Confidence            6666666555554443  2333222222       2  235666778888888888776543

>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70)

Probab=96.46  E-value=0.05  Score=61.13  Aligned_cols=109  Identities=19%  Similarity=0.305  Sum_probs=72.5

Q ss_pred             CceEEEEEeCCcCCCc--------chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceE----------eeecCcccCC
Q 007718          325 RKDVVFLVDVSGSMQG--------VLLEQTKNALSASLSKL---NPQDSFNIIAFNGETH----------LFSSSMKLAS  383 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g--------~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~----------~~~~~~~~~~  383 (591)
                      .--|+|+||+|.||..        +++..+.+++..++++.   .++|.++|+.||++..          .+.+ +...+
T Consensus        10 keailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~-L~~p~   88 (584)
T TIGR00578        10 RDSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQE-LDNPG   88 (584)
T ss_pred             eeEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEee-CCCCC
Confidence            3468999999999984        46778888888888764   5789999999998632          1222 22334


Q ss_pred             HHHHHHHHHHHhc-----C--CCC-CC-CchHHHHHHHHHhhhcC--CCCccEEEEEecCCC
Q 007718          384 QGTIINATQWLSS-----L--VAG-GG-TNILLPLKQAIKLLSDT--SESIPLIFLITDGTV  434 (591)
Q Consensus       384 ~~~~~~a~~~i~~-----l--~~~-Gg-T~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~  434 (591)
                      .+.+.+..+.+..     +  ..+ +. ..+..+|-.+.+++...  +-..+.|+++||-..
T Consensus        89 a~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~  150 (584)
T TIGR00578        89 AKRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDN  150 (584)
T ss_pred             HHHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCC
Confidence            4554443332221     0  011 11 26799999999998753  224578999999864

Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.

>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=96.34  E-value=0.3  Score=49.45  Aligned_cols=166  Identities=17%  Similarity=0.169  Sum_probs=98.2

Q ss_pred             eEEEEEeCCcCCCc-----chHHHHHHHHHHHHHh---cCCCCeEEEEEeCCce-EeeecCcc----------cCC----
Q 007718          327 DVVFLVDVSGSMQG-----VLLEQTKNALSASLSK---LNPQDSFNIIAFNGET-HLFSSSMK----------LAS----  383 (591)
Q Consensus       327 ~ivfviD~SgSM~g-----~~i~~ak~al~~~l~~---L~~~d~f~Ii~F~~~~-~~~~~~~~----------~~~----  383 (591)
                      =+++|+|++..-++     ..+..+-+++..|++.   +....++.||+.+... +.+.|...          ..+    
T Consensus         3 LLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~~   82 (276)
T PF03850_consen    3 LLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSDS   82 (276)
T ss_pred             EEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCccccccccc
Confidence            47899999876654     2466666666666653   4567799999887664 33333322          000    


Q ss_pred             ---------HHH-HHHHHHHHhcCCCC----CCCchHHHHHHHHHhhhcC----C----CCccEEEEEecCCCCChhhHH
Q 007718          384 ---------QGT-IINATQWLSSLVAG----GGTNILLPLKQAIKLLSDT----S----ESIPLIFLITDGTVGDERGIC  441 (591)
Q Consensus       384 ---------~~~-~~~a~~~i~~l~~~----GgT~l~~aL~~a~~~l~~~----~----~~~~~IillTDG~~~~~~~i~  441 (591)
                               ++. .+++.+.+++....    ..+.|..||..|+-.+++.    .    .-..+|+++.-|.++...+.+
T Consensus        83 ~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QYi  162 (276)
T PF03850_consen   83 NKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQYI  162 (276)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHHH
Confidence                     011 12222223322221    1268899999888776543    1    122355553444444444444


Q ss_pred             HHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHH
Q 007718          442 NEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDY  494 (591)
Q Consensus       442 ~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~  494 (591)
                      ..+.-. =.+++.++.|-++-+|. .+..+|++.+..|+|.|..+...+.+-+
T Consensus       163 ~~MN~i-FaAqk~~v~IDv~~L~~-~~s~fLqQa~d~T~G~y~~~~~~~~l~q  213 (276)
T PF03850_consen  163 PLMNCI-FAAQKQKVPIDVCKLGG-KDSTFLQQASDITGGIYLKVSKPEGLLQ  213 (276)
T ss_pred             HHHHHH-HHHhcCCceeEEEEecC-CchHHHHHHHHHhCceeeccCccccHHH
Confidence            444322 22234568888888887 4788999999999999999888765543

The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex

>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.16  Score=46.94  Aligned_cols=141  Identities=21%  Similarity=0.237  Sum_probs=96.2

Q ss_pred             ceEEEEEeCCcCCC-c----chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCce-EeeecCcccCCHHHHHHHHHHHhc
Q 007718          326 KDVVFLVDVSGSMQ-G----VLLEQTKNALSASLSKL---NPQDSFNIIAFNGET-HLFSSSMKLASQGTIINATQWLSS  396 (591)
Q Consensus       326 ~~ivfviD~SgSM~-g----~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~-~~~~~~~~~~~~~~~~~a~~~i~~  396 (591)
                      -..+++||.|--|. |    ++++.-|+++..+++.-   .+...++++...... ..++..     ....-..+.++..
T Consensus         4 EatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~-----T~~~gkilt~lhd   78 (243)
T COG5148           4 EATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTP-----TKQRGKILTFLHD   78 (243)
T ss_pred             ceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccc-----hhhhhHHHHHhcc
Confidence            45789999987655 3    58999999999888653   346789999887653 333221     2344556777889


Q ss_pred             CCCCCCCchHHHHHHHHHhhhcCCC---CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718          397 LVAGGGTNILLPLKQAIKLLSDTSE---SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ  473 (591)
Q Consensus       397 l~~~GgT~l~~aL~~a~~~l~~~~~---~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~  473 (591)
                      ++-.||.++..+|+.|.-.+..+.+   +.+.+.|+..-...++.+.+..+++...+    ++-|-.+-+|...|...|.
T Consensus        79 ~~~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~esedeLirlak~lkkn----nVAidii~fGE~~n~~~l~  154 (243)
T COG5148          79 IRLHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKN----NVAIDIIFFGEAANMAGLF  154 (243)
T ss_pred             ccccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccccHHHHHHHHHHHHhc----CeeEEEEehhhhhhhhHHH
Confidence            9999999999999998877766532   23455555444445667777776666433    3667777788776765544


Q ss_pred             HH
Q 007718          474 IL  475 (591)
Q Consensus       474 ~L  475 (591)
                      ..
T Consensus       155 ef  156 (243)
T COG5148         155 EF  156 (243)
T ss_pred             HH
Confidence            33

>COG2718 Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.047  Score=56.13  Aligned_cols=161  Identities=17%  Similarity=0.174  Sum_probs=89.1

Q ss_pred             ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC-CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCc
Q 007718          326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN  404 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~-~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~  404 (591)
                      .-++-++|+||||....-..||..-..+---|.- =+++-|+...+....+     .++..+      +. ..+..|||-
T Consensus       247 AVmfclMDvSGSM~~~~KdlAkrFF~lL~~FL~~kYenveivfIrHht~A~-----EVdE~d------FF-~~~esGGTi  314 (423)
T COG2718         247 AVMFCLMDVSGSMDQSEKDLAKRFFFLLYLFLRRKYENVEIVFIRHHTEAK-----EVDETD------FF-YSQESGGTI  314 (423)
T ss_pred             eEEEEEEecCCCcchHHHHHHHHHHHHHHHHHhcccceeEEEEEeecCcce-----ecchhh------ce-eecCCCCeE
Confidence            3455678999999877777777764332222331 2355566665554332     122211      11 235569999


Q ss_pred             hHHHHHHHHHhhhcC---CCCccEEEEEecCCCC--ChhhHHHHHHHHHhcCCCCCCeEEEEE-cCCCCCHHHH--HHHH
Q 007718          405 ILLPLKQAIKLLSDT---SESIPLIFLITDGTVG--DERGICNEIKSYLTNTRSISPRICTFG-VGLYCNHYFL--QILA  476 (591)
Q Consensus       405 l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~--~~~~i~~~v~~~~~~~~~~~~ri~t~G-iG~~~~~~lL--~~LA  476 (591)
                      +..||+.+.+.+...   .......+-.|||.-+  |.......+.+.+-.    .++.|+.+ |-..-.+..|  +.+-
T Consensus       315 vSSAl~~m~evi~ErYp~aeWNIY~fqaSDGDN~~dDserc~~ll~~~im~----~~~~y~Y~Eitq~~~H~t~~y~~~~  390 (423)
T COG2718         315 VSSALKLMLEVIKERYPPAEWNIYAFQASDGDNWADDSERCVELLAKKLMP----VVQYYGYIEITQRRTHQTLEYEALQ  390 (423)
T ss_pred             eHHHHHHHHHHHHhhCChhheeeeeeeecCCccccCCCHHHHHHHHHHHHH----hhhheEEEeeeecccchhhhhhhhh
Confidence            999999999998763   2334578999999864  334444555533321    12333332 1111112222  2221


Q ss_pred             HhCCC-EEEEcCCCCchHHHHHHHHHH
Q 007718          477 QIGRG-YYDSAYDPGSVDYRIRRFFTA  502 (591)
Q Consensus       477 ~~~~G-~~~~v~~~~~l~~~~~~~~~~  502 (591)
                      ....- ....+.+.+++-..|..+|.+
T Consensus       391 ~~~dnFa~~~I~~~~Diypvfr~lf~k  417 (423)
T COG2718         391 GVFDNFAMQTIREPDDIYPVFRELFSK  417 (423)
T ss_pred             ccCcchheeeecCHHHHHHHHHHHHhc
Confidence            11111 234567778888888888875

>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

Probab=95.87  E-value=0.56  Score=52.51  Aligned_cols=173  Identities=20%  Similarity=0.216  Sum_probs=100.1

Q ss_pred             EEecCCCCCCCccCceEEEEEeCCc-CCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCc--------
Q 007718          312 YLFPGKSQSRKVFRKDVVFLVDVSG-SMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSM--------  379 (591)
Q Consensus       312 ~~~P~~~~~~~~~~~~ivfviD~Sg-SM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~--------  379 (591)
                      ++.|+.-......|-.+||+||+|- ||...-...+-+++...+..++   ++.+++|+.|++....|....        
T Consensus       263 f~ap~~Y~~~~p~P~~yvFlIDVS~~a~~~g~~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~~~~~~~  342 (861)
T COG5028         263 FLAPKEYSLRQPPPPVYVFLIDVSFEAIKNGLVKAAIRAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDLDEQMLI  342 (861)
T ss_pred             EecccceeeccCCCCEEEEEEEeehHhhhcchHHHHHHHHHhhccCCCCCCCcceEEEEEEcceeeEEecCCCCccceee
Confidence            5567665444556889999999994 4443355556666666666553   578999999999876543111        


Q ss_pred             --------ccCC-----------HHHHHHHHHHHhcCCCC-CCC--chHHHHHHHHHhhhcCCCCccEEEEE-e-----c
Q 007718          380 --------KLAS-----------QGTIINATQWLSSLVAG-GGT--NILLPLKQAIKLLSDTSESIPLIFLI-T-----D  431 (591)
Q Consensus       380 --------~~~~-----------~~~~~~a~~~i~~l~~~-GgT--~l~~aL~~a~~~l~~~~~~~~~Iill-T-----D  431 (591)
                              .+..           ..+++.+++.+..+-.+ +.+  .++.||+.|..++.. .+.. .|.++ |     -
T Consensus       343 vsdld~pFlPf~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~-~GGk-ii~~~stlPn~G~  420 (861)
T COG5028         343 VSDLDEPFLPFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGG-TGGK-IIVFLSTLPNMGI  420 (861)
T ss_pred             ecccccccccCCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhc-cCce-EEEEeecCCCccc
Confidence                    0011           12233455556655444 443  589999998887754 3443 44444 4     2


Q ss_pred             CCCC-----------ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCC
Q 007718          432 GTVG-----------DERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYD  488 (591)
Q Consensus       432 G~~~-----------~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~  488 (591)
                      |...           ......+.+..+..+. ++.+.+|...- .+.+...|-.+++.++|..++...
T Consensus       421 Gkl~~r~d~e~~ll~c~d~fYk~~a~e~~k~-gIsvd~Flt~~-~yidvaTls~l~~~T~G~~~~Yp~  486 (861)
T COG5028         421 GKLQLREDKESSLLSCKDSFYKEFAIECSKV-GISVDLFLTSE-DYIDVATLSHLCRYTGGQTYFYPN  486 (861)
T ss_pred             ccccccccchhhhccccchHHHHHHHHHHHh-cceEEEEeccc-cccchhhhcchhhccCcceEEcCC
Confidence            3332           1111223333332221 34455555433 234777888999999999776544

>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells

Probab=95.82  E-value=0.096  Score=50.87  Aligned_cols=110  Identities=19%  Similarity=0.317  Sum_probs=72.3

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHH-HHHHHHhcC-------------CCCeEEEEEeCCceEeeecCcc--cCCHHH
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNA-LSASLSKLN-------------PQDSFNIIAFNGETHLFSSSMK--LASQGT  386 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~a-l~~~l~~L~-------------~~d~f~Ii~F~~~~~~~~~~~~--~~~~~~  386 (591)
                      ...+++|||||.+..|.. -|+..|.- +.-+++.+.             ....+++|.|++.... .....  ..-..+
T Consensus        11 ~~~~~vVfvvEgTAalgp-y~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~-~~~~v~~~g~T~~   88 (226)
T PF11265_consen   11 PPQAQVVFVVEGTAALGP-YWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCY-PEPIVQRSGPTSS   88 (226)
T ss_pred             CccceEEEEEecchhhhh-hHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCC-cccceeccCCcCC
Confidence            457899999999999964 56666543 444555553             2357899999876321 11111  112346


Q ss_pred             HHHHHHHHhcCCCC-CC----CchHHHHHHHHHhhhcC---------CCCccEEEEEecCCC
Q 007718          387 IINATQWLSSLVAG-GG----TNILLPLKQAIKLLSDT---------SESIPLIFLITDGTV  434 (591)
Q Consensus       387 ~~~a~~~i~~l~~~-Gg----T~l~~aL~~a~~~l~~~---------~~~~~~IillTDG~~  434 (591)
                      ....++||++++.. ||    +.+.+||..|+.++...         ....+..||++--.+
T Consensus        89 ~~~fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP  150 (226)
T PF11265_consen   89 PQKFLQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPP  150 (226)
T ss_pred             HHHHHHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCC
Confidence            67789999988765 33    34789999999988631         123578888887665

Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].

>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.74  E-value=0.04  Score=55.00  Aligned_cols=93  Identities=20%  Similarity=0.284  Sum_probs=58.8

Q ss_pred             eEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHh-cCCCCCCCch
Q 007718          327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAGGGTNI  405 (591)
Q Consensus       327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~-~l~~~GgT~l  405 (591)
                      .++.++|+||||....+.++..-+..++  -.++.+..++.-+..+.....    +..      =+++. .+..+|||++
T Consensus       263 ~i~vaVDtSGS~~d~ei~a~~~Ei~~Il--~~~~~eltli~~D~~v~~~~~----~r~------g~~~~~~~~ggG~Tdf  330 (396)
T COG3864         263 KIVVAVDTSGSMTDAEIDAAMTEIFDIL--KNKNYELTLIECDNIVRRMYR----VRK------GRDMKKKLDGGGGTDF  330 (396)
T ss_pred             heEEEEecCCCccHHHHHHHHHHHHHHH--hCCCcEEEEEEecchhhhhhc----cCC------cccCCcccCCCCCccc
Confidence            4889999999998766666665555555  234677888877777643211    111      12233 3455578999


Q ss_pred             HHHHHHHHHhhhcCCCCccEEEEEecCCCCC
Q 007718          406 LLPLKQAIKLLSDTSESIPLIFLITDGTVGD  436 (591)
Q Consensus       406 ~~aL~~a~~~l~~~~~~~~~IillTDG~~~~  436 (591)
                      ..+++    .+.+. ......|++|||.-+.
T Consensus       331 ~Pvfe----ylek~-~~~~~lIyfTDG~gd~  356 (396)
T COG3864         331 SPVFE----YLEKN-RMECFLIYFTDGMGDQ  356 (396)
T ss_pred             cHHHH----HHHhh-cccceEEEEccCCCCc
Confidence            87765    33332 2236899999999543

>PF14415 DUF4424: Domain of unknown function (DUF4424)

Probab=95.40  E-value=0.6  Score=46.55  Aligned_cols=47  Identities=15%  Similarity=0.273  Sum_probs=39.4

Q ss_pred             EEEEEEEEEecccCCCceeeEEEEeecCC--------Ce----------eEEEEEEEECCEEEEEEEE
Q 007718          101 FVAFNGSWRVHCIMAGRQCDCTIAVPLGE--------RG----------SLLGVEVEIDGRSYQSKLI  150 (591)
Q Consensus       101 ~v~~~q~f~n~~~~~~~~~e~~y~fPL~~--------~a----------~V~~f~~~i~gk~i~~~v~  150 (591)
                      +|+|..+|.|   ++++.++....||||+        .+          .|.+|.+.||||.+..++.
T Consensus         2 ~I~V~Y~F~N---~t~~dv~~~VaFPlP~i~~~~~~d~~~~~p~~~~~n~i~~Fk~~VdGk~v~~q~~   66 (253)
T PF14415_consen    2 RIRVRYVFRN---PTDQDVTVTVAFPLPDISGSPENDFAIAIPDNDSDNFIKDFKTTVDGKPVKPQVH   66 (253)
T ss_pred             EEEEEEEEeC---CCCCcEEEEEEEeCCCCCCCccccccccccccCCcCccceEEEEECCEEcCceeE
Confidence            4788999999   6889999999999993        11          4666999999999988883

>KOG4465 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.37  E-value=0.1  Score=53.01  Aligned_cols=135  Identities=20%  Similarity=0.197  Sum_probs=82.0

Q ss_pred             CCccCceEEEEEeCCcCCCc----chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhc
Q 007718          321 RKVFRKDVVFLVDVSGSMQG----VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS  396 (591)
Q Consensus       321 ~~~~~~~ivfviD~SgSM~g----~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~  396 (591)
                      .++..+.+.+.+|+|+||..    +.+..-..|....+-.+......-.++|.++-... |..   .+-.+.+...++++
T Consensus       423 a~ptgkr~~laldvs~sm~~rv~~s~ln~reaaa~m~linlhnead~~~vaf~d~lte~-pft---kd~kigqv~~~~nn  498 (598)
T KOG4465|consen  423 AEPTGKRFCLALDVSASMNQRVLGSILNAREAAAAMCLINLHNEADSRCVAFCDELTEC-PFT---KDMKIGQVLDAMNN  498 (598)
T ss_pred             CCCCCceEEEEEecchhhhhhhhccccchHHHHhhhheeeeccccceeEEEeccccccC-CCc---ccccHHHHHHHHhc
Confidence            34567899999999999984    33333223333344455555556788998885432 222   23345566666776


Q ss_pred             CCCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcC
Q 007718          397 LVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVG  464 (591)
Q Consensus       397 l~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~-~~~~i~~~v~~~~~~~~~~~~ri~t~GiG  464 (591)
                      +.+ |||+-+-++-+|-+.    .-...+.|++||.... ++-.....+++......-+...+...|.-
T Consensus       499 i~~-g~tdcglpm~wa~en----nlk~dvfii~tdndt~ageihp~~aik~yrea~~i~dakliv~amq  562 (598)
T KOG4465|consen  499 IDA-GGTDCGLPMIWAQEN----NLKADVFIIFTDNDTFAGEIHPAEAIKEYREAMDIHDAKLIVCAMQ  562 (598)
T ss_pred             CCC-CCCccCCceeehhhc----CCCccEEEEEecCcccccccCHHHHHHHHHHhcCCCcceEEEEEee
Confidence            654 778877777666442    2234578899998864 33344556666654443344666666653

>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]

Probab=94.55  E-value=0.31  Score=52.63  Aligned_cols=104  Identities=21%  Similarity=0.282  Sum_probs=71.5

Q ss_pred             CceEEEEEeCCcCCCc-----chHHHHHHHHHHH-HHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718          325 RKDVVFLVDVSGSMQG-----VLLEQTKNALSAS-LSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV  398 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g-----~~i~~ak~al~~~-l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~  398 (591)
                      ..++++++|+|.||..     .+++.+..++..+ ...+..+|++++..|++....+.+.  ....+.+...++.+..+.
T Consensus       224 ~~~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~gd~vg~~~~~~~~~~~~~p--~~G~~~l~~~l~~l~~~~  301 (416)
T COG1721         224 GRTVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKNGDRVGLLIFGGGGPKWIPP--SRGRRHLARILKALALLR  301 (416)
T ss_pred             CceEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCeeEEEEECCCcceeeCC--CcchHHHHHHHHHhhccC
Confidence            6899999999999994     5888888776655 4567789999999999876544332  245677777878787777


Q ss_pred             CCCC-CchHHHHHHHHHhhhcCCCCccEEEEEecCCC
Q 007718          399 AGGG-TNILLPLKQAIKLLSDTSESIPLIFLITDGTV  434 (591)
Q Consensus       399 ~~Gg-T~l~~aL~~a~~~l~~~~~~~~~IillTDG~~  434 (591)
                      ..+. |+...+... ...+   +...+.++++||=..
T Consensus       302 ~~~~~~~~~~~~~~-~~~l---~~~~~~~~~~~~l~~  334 (416)
T COG1721         302 PAPEETDYIRRVSK-LDFL---PPRRPLVILITDLAR  334 (416)
T ss_pred             CCCcchhHHHHhhh-hhcc---CcccceEEEeehhhc
Confidence            7744 444444322 2222   234456777777664

>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.03  E-value=10  Score=42.46  Aligned_cols=174  Identities=21%  Similarity=0.203  Sum_probs=103.4

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeee------------cCcccCCHHHHHHH-
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFS------------SSMKLASQGTIINA-  390 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~------------~~~~~~~~~~~~~a-  390 (591)
                      .|-=++||+|+-  |..+.+..+|+++...++.|+++..+++|+|+..++...            .....++.+.+.+. 
T Consensus       120 ~ppvf~fVvDtc--~~eeeL~~LkssL~~~l~lLP~~alvGlItfg~~v~v~el~~~~~sk~~VF~G~ke~s~~q~~~~L  197 (745)
T KOG1986|consen  120 SPPVFVFVVDTC--MDEEELQALKSSLKQSLSLLPENALVGLITFGTMVQVHELGFEECSKSYVFSGNKEYSAKQLLDLL  197 (745)
T ss_pred             CCceEEEEEeec--cChHHHHHHHHHHHHHHhhCCCcceEEEEEecceEEEEEcCCCcccceeEEeccccccHHHHHHHh
Confidence            355689999985  445789999999999999999999999999999865421            11122222222211 


Q ss_pred             ------------------------------HHHHhcCCC------CCC---CchHHHHHHHHHhhhcC-CCCccEEEEEe
Q 007718          391 ------------------------------TQWLSSLVA------GGG---TNILLPLKQAIKLLSDT-SESIPLIFLIT  430 (591)
Q Consensus       391 ------------------------------~~~i~~l~~------~Gg---T~l~~aL~~a~~~l~~~-~~~~~~IillT  430 (591)
                                                    .+.++.++.      .|.   -..+.||..|..++... ++....|++++
T Consensus       198 ~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c~p~~g~rIv~f~  277 (745)
T KOG1986|consen  198 GLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRPLRCTGVALSIASGLLEGCFPNTGARIVLFA  277 (745)
T ss_pred             cCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCcccchhHHHHHHHHHhcccCCCCcceEEEec
Confidence                                          111222221      111   22456777777776543 34456788888


Q ss_pred             cCCCCC---------------------h------h---hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCC
Q 007718          431 DGTVGD---------------------E------R---GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGR  480 (591)
Q Consensus       431 DG~~~~---------------------~------~---~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~  480 (591)
                      -|--+.                     .      .   ...+.+.+.+.+ .++-+.||+-++-. +--..|+.+++.+|
T Consensus       278 gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa~KfY~~La~r~~~-~ghvlDifa~~lDQ-vGi~EMk~l~~~TG  355 (745)
T KOG1986|consen  278 GGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKAIKFYEKLAERLAN-QGHVLDIFAAALDQ-VGILEMKPLVESTG  355 (745)
T ss_pred             cCCCCcCCceecchhhcCCCcCcccccCcchHHHHHHHHHHHHHHHHHHh-CCceEeeeeeeccc-cchHHHHHHhhcCC
Confidence            883210                     0      0   111222222222 34557788876633 34567999999999


Q ss_pred             CEEEEcCCCC--chHHHHHHHHH
Q 007718          481 GYYDSAYDPG--SVDYRIRRFFT  501 (591)
Q Consensus       481 G~~~~v~~~~--~l~~~~~~~~~  501 (591)
                      |....-.+.+  -....+++++.
T Consensus       356 G~lvl~dsF~~s~Fk~sfqR~f~  378 (745)
T KOG1986|consen  356 GVLVLGDSFNTSIFKQSFQRIFT  378 (745)
T ss_pred             cEEEEecccchHHHHHHHHHHhc
Confidence            9987655543  33455555555

>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]

Probab=92.12  E-value=12  Score=36.07  Aligned_cols=147  Identities=12%  Similarity=0.106  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHh-c--CCCCeEEEEE-eCCceEeeecCccc---------------------CCHHHHHHHHHHHhcC
Q 007718          343 LEQTKNALSASLSK-L--NPQDSFNIIA-FNGETHLFSSSMKL---------------------ASQGTIINATQWLSSL  397 (591)
Q Consensus       343 i~~ak~al~~~l~~-L--~~~d~f~Ii~-F~~~~~~~~~~~~~---------------------~~~~~~~~a~~~i~~l  397 (591)
                      ....-+.+.-+|+. |  ..+.|+.+++ ++...+.+.+...+                     .++..+.+..+.++.-
T Consensus        43 ~~kvl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~sd~yrrfr~vde~~i~eiyrl~e~~  122 (296)
T COG5242          43 RDKVLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRNSDMYRRFRNVDETDITEIYRLIEHP  122 (296)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhhhhcccCccchhhhhhhcccchHHHHHHHHHHhCc
Confidence            44455555555542 2  3467888765 44445444443221                     2222344444444432


Q ss_pred             CCC-CCCchHHHHHHHHHhhhcCCCC---ccEEEEEec-CCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHH
Q 007718          398 VAG-GGTNILLPLKQAIKLLSDTSES---IPLIFLITD-GTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFL  472 (591)
Q Consensus       398 ~~~-GgT~l~~aL~~a~~~l~~~~~~---~~~IillTD-G~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL  472 (591)
                      ... -.+++..|+..++....+....   ..+|+++|= |... ..+.+..+.-. =.+...+++|..+.|+.+  ..+|
T Consensus       123 ~k~sqr~~v~gams~glay~n~~~~e~slkSriliftlsG~d~-~~qYip~mnCi-F~Aqk~~ipI~v~~i~g~--s~fl  198 (296)
T COG5242         123 HKNSQRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLSGRDR-KDQYIPYMNCI-FAAQKFGIPISVFSIFGN--SKFL  198 (296)
T ss_pred             ccccceeehhhhhhhhHHHHhhhcccccccceEEEEEecCchh-hhhhchhhhhe-eehhhcCCceEEEEecCc--cHHH
Confidence            222 4578888888888877654322   124444443 6321 11112222111 112234577888888764  6789


Q ss_pred             HHHHHhCCCEEEEcCCCCchH
Q 007718          473 QILAQIGRGYYDSAYDPGSVD  493 (591)
Q Consensus       473 ~~LA~~~~G~~~~v~~~~~l~  493 (591)
                      .+-+.++||.|..+.+.+.+-
T Consensus       199 ~Q~~daTgG~Yl~ve~~eGll  219 (296)
T COG5242         199 LQCCDATGGDYLTVEDTEGLL  219 (296)
T ss_pred             HHHhhccCCeeEeecCchhHH
Confidence            999999999999998876543

>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]

Probab=91.12  E-value=0.64  Score=50.07  Aligned_cols=188  Identities=17%  Similarity=0.178  Sum_probs=98.1

Q ss_pred             eEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHH---HHHHHHHhcCCCCeEEEEEeCCceEe-ee-------
Q 007718          308 IFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKN---ALSASLSKLNPQDSFNIIAFNGETHL-FS-------  376 (591)
Q Consensus       308 ~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak~---al~~~l~~L~~~d~f~Ii~F~~~~~~-~~-------  376 (591)
                      .|.+.+.|..     -.|.|+.+|+|.|+||.. .++..|.   .|..-++.+..+-|+++-+|-+.... |.       
T Consensus        90 ~f~v~~~~a~-----~yPvDLYyLmDlS~Sm~d-dl~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~l  163 (426)
T PF00362_consen   90 TFNVTVRPAE-----DYPVDLYYLMDLSYSMKD-DLENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEKL  163 (426)
T ss_dssp             EEEEEEEBSS-----S--EEEEEEEE-SGGGHH-HHHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHCH
T ss_pred             EEEEEEeecc-----ccceeEEEEeechhhhhh-hHHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhhh
Confidence            4666666654     468999999999999975 5666654   34445666777889999999776421 10       


Q ss_pred             --cC---------------cccCCHHHHHHHHHHHhcCCCCCCCch----HHHHHHHH---HhhhcCCCCccEEEEEecC
Q 007718          377 --SS---------------MKLASQGTIINATQWLSSLVAGGGTNI----LLPLKQAI---KLLSDTSESIPLIFLITDG  432 (591)
Q Consensus       377 --~~---------------~~~~~~~~~~~a~~~i~~l~~~GgT~l----~~aL~~a~---~~l~~~~~~~~~IillTDG  432 (591)
                        +.               ....+ ++..+..+.+++..-.|+-+-    ..||-.|.   +.+.=+.+..+.+++.||+
T Consensus       164 ~~pc~~~~~~c~~~~~f~~~l~Lt-~~~~~F~~~v~~~~is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~~TD~  242 (426)
T PF00362_consen  164 KNPCPSKNPNCQPPFSFRHVLSLT-DDITEFNEEVNKQKISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVFSTDA  242 (426)
T ss_dssp             HSTSCCTTS--B---SEEEEEEEE-S-HHHHHHHHHTS--B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEEEESS
T ss_pred             cCcccccCCCCCCCeeeEEeeccc-chHHHHHHhhhhccccCCCCCCccccchheeeeecccccCcccCceEEEEEEcCC
Confidence              00               00111 355566666665544333221    22332222   1111124567899999998


Q ss_pred             CCCC--------------------hh-----------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCC
Q 007718          433 TVGD--------------------ER-----------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRG  481 (591)
Q Consensus       433 ~~~~--------------------~~-----------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G  481 (591)
                      ...-                    ..           .....+.+.+.+.  .-..||++.-.   -....+.|+..=.|
T Consensus       243 ~fH~agDg~l~gi~~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~--~i~~IFAVt~~---~~~~Y~~L~~~i~~  317 (426)
T PF00362_consen  243 GFHFAGDGKLAGIVKPNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSEN--NINPIFAVTKD---VYSIYEELSNLIPG  317 (426)
T ss_dssp             -B--TTGGGGGT--S---SS--BSTTSBBGGGGCS----HHHHHHHHHHT--TEEEEEEEEGG---GHHHHHHHHHHSTT
T ss_pred             ccccccccccceeeecCCCceEECCCCcccccccccCCCHHHHHHHHHHc--CCEEEEEEchh---hhhHHHHHhhcCCC
Confidence            7420                    00           1234455554432  12457776322   23355777777666


Q ss_pred             EEEEc--CCCCchHHHHHHHHHHhccce
Q 007718          482 YYDSA--YDPGSVDYRIRRFFTAASSVF  507 (591)
Q Consensus       482 ~~~~v--~~~~~l~~~~~~~~~~~~~p~  507 (591)
                      ...-.  .+.+.+-+.+...+.++.+.+
T Consensus       318 s~vg~L~~dSsNIv~LI~~aY~~i~s~V  345 (426)
T PF00362_consen  318 SSVGELSSDSSNIVQLIKEAYNKISSKV  345 (426)
T ss_dssp             EEEEEESTTSHTHHHHHHHHHHHHCTEE
T ss_pred             ceecccccCchhHHHHHHHHHHHHhheE
Confidence            65433  333457777777777776543

The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....

>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]

Probab=83.82  E-value=45  Score=33.27  Aligned_cols=165  Identities=16%  Similarity=0.132  Sum_probs=88.5

Q ss_pred             cCceEEEEEeCCcCCCc--------chHHHHHHHHHHHHHh-c--CCCCeEEEEEeCCceEe-eecCc------------
Q 007718          324 FRKDVVFLVDVSGSMQG--------VLLEQTKNALSASLSK-L--NPQDSFNIIAFNGETHL-FSSSM------------  379 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g--------~~i~~ak~al~~~l~~-L--~~~d~f~Ii~F~~~~~~-~~~~~------------  379 (591)
                      .|.-++++||.+.--+|        ..+...-+++..+++. |  ..+.++.+++..++... +.++.            
T Consensus        22 ~~slL~vlId~~p~~Wg~~as~~~~~ti~kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~  101 (314)
T KOG2487|consen   22 NPSLLVVLIDANPCSWGMLASAENWETISKVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD  101 (314)
T ss_pred             CceeEEEEEecCcchhhhhhhhcCceeHHHHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence            45668899999873222        2455566666666643 3  34679999998655321 11100            


Q ss_pred             ------------ccCCHHHHHHHHHHHhc-CCCC-C-CCchHHHHHHHHHhhhcCC------CCccEEEEEecCCCCChh
Q 007718          380 ------------KLASQGTIINATQWLSS-LVAG-G-GTNILLPLKQAIKLLSDTS------ESIPLIFLITDGTVGDER  438 (591)
Q Consensus       380 ------------~~~~~~~~~~a~~~i~~-l~~~-G-gT~l~~aL~~a~~~l~~~~------~~~~~IillTDG~~~~~~  438 (591)
                                  ...++.-+++..+.+.. ...+ | .|-+..|+..++.......      .-..+|+++|=+.....+
T Consensus       102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~L~yi~~~~ke~~~~~lkSRilV~t~t~d~~~q  181 (314)
T KOG2487|consen  102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDALGYINRLHKEEASEKLKSRILVFTLTRDRALQ  181 (314)
T ss_pred             chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhccchHhhhhhhhhhhhhhceEEEEEechHHHhh
Confidence                        01111112222222321 1111 2 4556666666655443211      113467777776532111


Q ss_pred             hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCch
Q 007718          439 GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSV  492 (591)
Q Consensus       439 ~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l  492 (591)
                       ....+.- +=.+...+++|-++.+|++  ..+|++-+..+||.|..+...+.+
T Consensus       182 -yi~~MNc-iFaAqKq~I~Idv~~l~~~--s~~LqQa~D~TGG~YL~v~~~~gL  231 (314)
T KOG2487|consen  182 -YIPYMNC-IFAAQKQNIPIDVVSLGGD--SGFLQQACDITGGDYLHVEKPDGL  231 (314)
T ss_pred             -hhhHHHH-HHHHHhcCceeEEEEecCC--chHHHHHHhhcCCeeEecCCcchH
Confidence             1111111 1111234588888888875  679999999999999998877644

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=80.91  E-value=18  Score=45.19  Aligned_cols=120  Identities=19%  Similarity=0.193  Sum_probs=73.4

Q ss_pred             ceEEEEEeCCcCCCcch-HHHHHHHHHH---HHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC-
Q 007718          326 KDVVFLVDVSGSMQGVL-LEQTKNALSA---SLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG-  400 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~~-i~~ak~al~~---~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~-  400 (591)
                      -.+++-+|-|.||..++ -..|-+.+..   .|..|.-+ .++|+.||...+.+.+.-.+.+.+.-.++..|.   .-. 
T Consensus      4393 yqvmisiddsksmses~~~~la~etl~lvtkals~le~g-~iav~kfge~~~~lh~fdkqfs~esg~~~f~~f---~feq 4468 (4600)
T COG5271        4393 YQVMISIDDSKSMSESGSTVLALETLALVTKALSLLEVG-QIAVMKFGEQPELLHPFDKQFSSESGVQMFSHF---TFEQ 4468 (4600)
T ss_pred             eEEEEEecccccccccCceeeehHHHHHHHHHHHHHhhc-cEEEEecCCChhhhCchhhhhcchHHHHHHHhh---chhc
Confidence            36788999999998532 2223333333   34445444 889999999988766655555555554454443   333 


Q ss_pred             CCCchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHh
Q 007718          401 GGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLT  449 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~i~~~v~~~~~  449 (591)
                      ..||..+-..+.+..+...     .+....=|+++||.-.+.+.+...++++..
T Consensus      4469 s~tnv~~l~~~s~k~f~~a~t~~h~d~~qleiiisdgicedhdsi~kllrra~e 4522 (4600)
T COG5271        4469 SNTNVLALADASMKCFNYANTASHHDIRQLEIIISDGICEDHDSIRKLLRRAQE 4522 (4600)
T ss_pred             ccccHHHHHHHHHHHHHHhhhhcccchheeEEEeecCcccchHHHHHHHHHhhh
Confidence            6777654443334333221     122334589999998888888777776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	591
4fx5_A	464	VON willebrand factor type A; structural genomics,	8e-45
2x31_A	189	Magnesium-chelatase 60 kDa subunit; ligase, bacter	2e-18
3rag_A	242	Uncharacterized protein; structural genomics, PSI-	4e-11
3ibs_A	218	Conserved hypothetical protein BATB; structural ge	8e-11
1shu_X	182	Anthrax toxin receptor 2; alpha/beta rossmann fold	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
2nvo_A	535	RO sixty-related protein, RSR; alpha helical repea	1e-06
1q0p_A	223	Complement factor B; VON willebrand factor, MAC-1,	6e-05
1yvr_A	538	RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein,	6e-04

>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Length = 464

 Score =  164 bits (416), Expect = 8e-45
 Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 8/194 (4%)

Query: 326 KDVVFLVDVSGSMQ--GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHL---FSSSMK 380
              V ++D SGSM      +   K A   ++  L     F ++A      +       + 
Sbjct: 78  NVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLL 137

Query: 381 LASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGI 440
            A   +   A + +  L A GGT +   L QA ++      +I    L+TDG    E   
Sbjct: 138 RADYQSRAAAKEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESE--- 194

Query: 441 CNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFF 500
                +    +   +      G+G       L+ +A    G      DP ++    R   
Sbjct: 195 TPADLARAIQSSIGNFTADCRGIGEDWEPKELRKIADALLGTVGIIRDPATLAEDFREMT 254

Query: 501 TAASSVFLTNMTLE 514
             +    + ++ L 
Sbjct: 255 AKSMGKEVADVALR 268

>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Length = 189

 Score = 83.0 bits (205), Expect = 2e-18
 Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 13/168 (7%)

Query: 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGETHLFSSSMKLAS 383
            + ++F VD SGS     L + K A+   L +    +D  ++I F G     ++ + L  
Sbjct: 5   DRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGT----AAQVLLQP 60

Query: 384 QGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSD--TSESIPLIFLITDGTVGDERGIC 441
             ++    + L  L  GGGT +   ++ A+       +    P I L+TDG         
Sbjct: 61  SRSLTQTKRQLQGLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGT 120

Query: 442 NEIKSYLTNTRSISPRICTFGVGLYC------NHYFLQILAQIGRGYY 483
              +        ++  I   G+           +  L  LA+    +Y
Sbjct: 121 ANRELAGEQATKVARAIRASGMPAVIIDTAMRPNPALVDLARTMDAHY 168

>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Length = 242

 Score = 62.5 bits (151), Expect = 4e-11
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNA---LSASLSKLNPQDSFNIIAFNGETHLFSSSMKLAS 383
            +V  +D S SM+  +    + A   L+ SL   +   + ++IAF G+     ++  +  
Sbjct: 136 HLVVCLDTSASMRDKI-PTVREAVRDLALSLKVRSGPLAVSVIAFPGKGE--EATRLVQP 192

Query: 384 QGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIP 424
             + +N     + LVA GGT     +  A  LL   + ++ 
Sbjct: 193 FSSEVNVAALEAELVARGGTPTGPAIDHAADLLLSHARNVD 233

>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Length = 218

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 24/159 (15%)

Query: 318 SQSRKVFRK--DVVFLVDVSGSM--QGVL---LEQTKNALSASLSKLNPQDSFNIIAFNG 370
           + S  V RK  +V+  +D+S SM  Q V    LE+ K  +S  + +L   D   +I F G
Sbjct: 2   NASNAVKRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDEL-DNDKVGMIVFAG 60

Query: 371 ETHLFS--SSMKLASQGTIINATQWLS-SLVAGGGTNILLPLKQAIKLLSDTSESIPLIF 427
           +       +S       +     + +S SL++  GT I   +  A +  +        I 
Sbjct: 61  DAFTQLPITS----DYISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAII 116

Query: 428 LITDG--TVGDERGICNEIKSYLTNTRSISPRICTFGVG 464
           +ITDG    G                  I  ++   GVG
Sbjct: 117 VITDGENHEGGAVEAAKAAAEK-----GI--QVSVLGVG 148

>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Length = 182

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 21/177 (11%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNGETHLFSSSMKLAS-Q 384
           D+ F++D SGS+    +E   N +     +  +P+   + I F+ +  +    + L   +
Sbjct: 8   DLYFVLDKSGSVANNWIE-IYNFVQQLAERFVSPEMRLSFIVFSSQATI---ILPLTGDR 63

Query: 385 GTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIP--LIFLITDGTVGDERGICN 442
           G I    + L  +   G T I   LK A + +          +I  +TDG    +  + +
Sbjct: 64  GKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGK--LDGLVPS 121

Query: 443 EIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRF 499
             +     +RS+   +   GV      +    L +I       A     V      F
Sbjct: 122 YAEKEAKISRSLGASVYCVGVL----DFEQAQLERI-------ADSKEQVFPVKGGF 167

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 4e-09
 Identities = 87/613 (14%), Positives = 174/613 (28%), Gaps = 200/613 (32%)

Query: 37  TRQP----ESYLPEAVMVYAVVGEPQIVDNPDVPSYQPYVH-----GKCQPPALIPLH-M 86
            RQP      Y+ +   +Y    + Q+    +V   QPY+       + +P   + +  +
Sbjct: 102 QRQPSMMTRMYIEQRDRLY---NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 87  HGV---EMEVDCCLDTAFV---AFNGSW-------RVHCIMAGRQCDCTIAVP----LGE 129
            G     + +D CL         F   W           ++   Q       P      +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 130 RGSLLGVEVE---------IDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQ---IYT 177
             S + + +          +  + Y++ L+ L + +  +                  + T
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-------NAFNLSCKILLT 271

Query: 178 LRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTFPAYVIPLGRKIPKSEKIILNVNS 237
            R        T  +    +  ++ +      S+  T               E        
Sbjct: 272 TR----FKQVTDFLSAATTTHISLDH----HSMTLT-------------PDE-------- 302

Query: 238 GVSEQIVGKCSSHPLKELSREVGK---LSFSYEAE-----VKRWSNSDF----KFSYTVA 285
              + ++ K      ++L REV        S  AE     +  W N       K +  + 
Sbjct: 303 --VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 286 STDLFGGVLLQSPSLHDFDQRQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQ 345
           S+     + +  P+    + R++F   L         VF         +           
Sbjct: 361 SS-----LNVLEPA----EYRKMF-DRLS--------VFPPS----AHIP--------TI 390

Query: 346 TKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNI 405
               LS     +   D   ++             KL              SLV       
Sbjct: 391 L---LSLIWFDVIKSDVMVVVN------------KLHK-----------YSLVE------ 418

Query: 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEI-------KSYLTNTRSISPR- 457
               KQ      +++ SIP I+L     + +E  +   I       K++ ++        
Sbjct: 419 ----KQP----KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 458 --ICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYR-----IRRFFTAASSVFLTN 510
               +  +G +  H     L  I      + +    +D+R     IR   TA ++     
Sbjct: 471 QYFYSH-IG-H--H-----LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 511 MTLET--------SKHLNSLELFPSHIPDFCLEC-PLIVSGRYSGNFGDSVQVSGTMADT 561
            TL+           +    E   + I DF  +    ++  +Y+    D +++   MA+ 
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT----DLLRI-ALMAED 576

Query: 562 SNFIIELKAQNAK 574
                E   Q  +
Sbjct: 577 EAIFEEAHKQVQR 589

>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} Length = 535

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 17/150 (11%)

Query: 324 FRKDVVFLVDVSGSMQGVLLEQTKN------ALSASLSKLNPQDSFNIIAFNGETHLFSS 377
                +  +DVSGSM    +           A + SL  L  +     + F  +      
Sbjct: 361 ANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFR---- 416

Query: 378 SMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDG-TVGD 436
            + +  + T+ +A Q   S+ + GGT+   P+  A +   D         + TD  T   
Sbjct: 417 PLGITPRDTLESAMQKAQSV-SFGGTDCAQPILWAAQERLDVD----TFVVYTDNETWAG 471

Query: 437 ERGICNEIKSYLTNTRSISPRICTFGVGLY 466
           +      +  Y       +P++   G+   
Sbjct: 472 QVHPTVALDQYAQK-MGRAPKLIVVGLTAT 500

>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Length = 223

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 29/190 (15%)

Query: 316 GKSQSRKVFRK-----DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQD---SFNIIA 367
           G+ Q RK+        ++  ++D S S+        K +L   + K+        + ++ 
Sbjct: 1   GEQQKRKIVLDPSGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVT 60

Query: 368 FNGE--THLFSSSMKLASQGTIINATQWLS--SLVAGGGTNILLPLKQAIKLLSDTSESI 423
           +       +  S    ++   +      ++        GTN    L+    ++S   +  
Sbjct: 61  YATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVP 120

Query: 424 P--------LIFLITDG---TVGDERGICNEIKSYLTNTRSISP------RICTFGVGLY 466
           P        +I L+TDG     GD   + +EI+  L   +           +  FGVG  
Sbjct: 121 PEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPL 180

Query: 467 CNHYFLQILA 476
            N   +  LA
Sbjct: 181 VNQVNINALA 190

>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Length = 538

 Score = 41.8 bits (97), Expect = 6e-04
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 14/134 (10%)

Query: 319 QSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSAS----LSKLNPQDSFNIIAFNGETHL 374
           +  +   K  +  +DVS SM   +L    NA   +    +     +   +++AF+ E   
Sbjct: 362 KLVEPTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEML- 420

Query: 375 FSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTV 434
                 +     +    + +S +   G T+  LP+  A K    T+ +  +  + TD   
Sbjct: 421 ---PCPITVNMLLHEVVEKMSDI-TMGSTDCALPMLWAQK----TNTAADIFIVFTDCET 472

Query: 435 -GDERGICNEIKSY 447
             ++      +K Y
Sbjct: 473 NVEDVHPATALKQY 486

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	591
4fx5_A	464	VON willebrand factor type A; structural genomics,	99.92
1ijb_A	202	VON willebrand factor; dinucleotide-binding fold,	99.87
1q0p_A	223	Complement factor B; VON willebrand factor, MAC-1,	99.86
3ibs_A	218	Conserved hypothetical protein BATB; structural ge	99.85
4hqo_A	266	Sporozoite surface protein 2; malaria, gliding mot	99.84
3zqk_A	199	VON willebrand factor; blood clotting, adamts-13,	99.84
1mf7_A	194	Integrin alpha M; cell adhesion; 1.25A {Homo sapie	99.82
4hqf_A	281	Thrombospondin-related anonymous protein, trap; ma	99.82
1shu_X	182	Anthrax toxin receptor 2; alpha/beta rossmann fold	99.82
2b2x_A	223	Integrin alpha-1; computational design, antibody-a	99.82
1n3y_A	198	Integrin alpha-X; alpha/beta rossmann fold, cell a	99.81
1pt6_A	213	Integrin alpha-1; cell adhesion; 1.87A {Homo sapie	99.81
3n2n_F	185	Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho	99.8
1atz_A	189	VON willebrand factor; collagen-binding, hemostasi	99.8
1v7p_C	200	Integrin alpha-2; snake venom, C-type lectin, anta	99.8
1mjn_A	179	Integrin alpha-L; rossmann fold, immune system; 1.	99.79
2xgg_A	178	Microneme protein 2; A/I domain, cell adhesion, hy	99.77
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	99.77
2x31_A	189	Magnesium-chelatase 60 kDa subunit; ligase, bacter	99.77
3hrz_D	741	Complement factor B; serine protease, glycosilated	99.75
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	99.75
3k6s_A	1095	Integrin alpha-X; cell receptor, adhesion molecule	99.62
2x5n_A	192	SPRPN10, 26S proteasome regulatory subunit RPN10;	99.57
4b4t_W	268	RPN10, 26S proteasome regulatory subunit RPN10; hy	99.56
2ww8_A	893	RRGA, cell WALL surface anchor family protein; IGG	99.44
1yvr_A	538	RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein,	99.29
1jey_B	565	KU80; double-strand DNA break repair, non-homologo	99.2
2nvo_A	535	RO sixty-related protein, RSR; alpha helical repea	99.06
3rag_A	242	Uncharacterized protein; structural genomics, PSI-	98.96
1jey_A	609	KU70; double-strand DNA break repair, non-homologo	98.83
2nut_A	769	Protein transport protein SEC23A; human copii SEC2	98.21
3rag_A	242	Uncharacterized protein; structural genomics, PSI-	98.19
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	98.18
1m2o_A	768	SEC23, protein transport protein SEC23, SEC23P; zi	98.05
2iue_A	212	Pactolus I-domain; membrane protein, CD, ITC, limb	98.01
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	98.0
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	97.91
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	97.73
3t3p_B	472	Integrin beta-3; integrin, cell adhesion, blood cl	97.56
3efo_B	770	SEC24 related gene family, member D; copii, coat p	97.53
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	97.47
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	97.41
3vi3_B	454	Integrin beta-1; beta propeller fold, rossman fold	97.3
3v4v_B	503	Integrin beta-7; cell adhesion, madcam-1, membrane	96.82
4g2a_A	322	Hypothetical protein; two domains protein, yarhg d	96.32

>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}

Probab=99.92  E-value=4e-24  Score=230.50  Aligned_cols=190  Identities=19%  Similarity=0.151  Sum_probs=166.7

Q ss_pred             ccCceEEEEEeCCcCCC--cchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecC---cccCCHHHHHHHHHHHhcC
Q 007718          323 VFRKDVVFLVDVSGSMQ--GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSS---MKLASQGTIINATQWLSSL  397 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~--g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~---~~~~~~~~~~~a~~~i~~l  397 (591)
                      ..+.+++||||+||||.  +.+++.+|+++..+++.|+++++|+|+.|++++..+.+.   +..++..+...+.++|+++
T Consensus        75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~~L  154 (464)
T 4fx5_A           75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVGRL  154 (464)
T ss_dssp             -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHHTC
T ss_pred             CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHHcC
Confidence            46799999999999999  999999999999999999999999999999999887664   4566889999999999999


Q ss_pred             CCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 007718          398 VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA  476 (591)
Q Consensus       398 ~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA  476 (591)
                      .++|||+++.||+.|++.+...++..+.|||||||.+++.. .......+..    ..+++||+||+|.+.|..+|+.||
T Consensus       155 ~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~~~~l~~~~~a~----~~~i~i~tiGiG~~~d~~~L~~IA  230 (464)
T 4fx5_A          155 HANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESETPADLARAIQSS----IGNFTADCRGIGEDWEPKELRKIA  230 (464)
T ss_dssp             CCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSCHHHHHHHHHHH----TTTCEEEEEEESSSSCHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCccCHHHHHHHH
Confidence            99999999999999999998766667899999999987432 1222222221    245999999999999999999999


Q ss_pred             HhCCCEEEEcCCCCchHHHHHHHHHHhccceEEeEEEEec
Q 007718          477 QIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETS  516 (591)
Q Consensus       477 ~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p~~~~v~l~~~  516 (591)
                      +.++|.|+++.+.+++...+.+++..+.++.++|+++.+.
T Consensus       231 ~~tgG~~~~v~d~~~L~~~f~~i~~~~~s~~~~dv~l~l~  270 (464)
T 4fx5_A          231 DALLGTVGIIRDPATLAEDFREMTAKSMGKEVADVALRLW  270 (464)
T ss_dssp             HHTTCCEEEESSGGGHHHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred             HhCCCEEEEcCCHHHHHHHHHHHHHHhhchheeeeEEEEE
Confidence            9999999999999999999999999999999999998864

>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C

Probab=99.87  E-value=1e-20  Score=182.07  Aligned_cols=175  Identities=11%  Similarity=0.119  Sum_probs=136.9

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG  400 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~  400 (591)
                      .+.+++||||.||||.+.+++.+|+++..+++.|.   +++||+|+.|++++....+.....+.+   .+.+.|+++...
T Consensus        12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~---~~~~~i~~l~~~   88 (202)
T 1ijb_A           12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPS---ELRRIASQVKYA   88 (202)
T ss_dssp             SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHH---HHHHHHHTCCCC
T ss_pred             CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCCCHH---HHHHHHHhCcCC
Confidence            37999999999999999999999999999999997   578999999999988766543333444   445557777765


Q ss_pred             -C-CCchHHHHHHHHHhh-hc--CCCCccEEEEEecCCCCCh--hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718          401 -G-GTNILLPLKQAIKLL-SD--TSESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ  473 (591)
Q Consensus       401 -G-gT~l~~aL~~a~~~l-~~--~~~~~~~IillTDG~~~~~--~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~  473 (591)
                       | +|+++.||+.|.+.+ ..  +++..+.|||+|||..++.  ..+.+.++....    .+++||+||+|.+.|...|+
T Consensus        89 gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~~----~gi~i~~igvG~~~~~~~L~  164 (202)
T 1ijb_A           89 GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKK----KKVIVIPVGIGPHANLKQIR  164 (202)
T ss_dssp             CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHH----TTEEEEEEEESTTSCHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccchHHHHHHHHHHHH----CCCEEEEEecCCcCCHHHHH
Confidence             3 499999999998654 32  2345679999999998753  234443333322    35999999999999999999


Q ss_pred             HHHHhC-CCEEEEcCCCCchHHHHHHHHHHhcc
Q 007718          474 ILAQIG-RGYYDSAYDPGSVDYRIRRFFTAASS  505 (591)
Q Consensus       474 ~LA~~~-~G~~~~v~~~~~l~~~~~~~~~~~~~  505 (591)
                      .||..+ +|.++.+.+.+++...+.++.+.++.
T Consensus       165 ~iA~~~~~~~~~~~~~~~~L~~~~~~i~~~iC~  197 (202)
T 1ijb_A          165 LIEKQAPENKAFVLSSVDELEQQRDEIVSYLCD  197 (202)
T ss_dssp             HHHHHCTTCCCEEESSGGGHHHHHHHHHHHHHH
T ss_pred             HHhCCCCcccEEEeCCHHHHHHHHHHHHHHhhc
Confidence            999975 67888899999999888888887653

>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1

Probab=99.86  E-value=3.8e-21  Score=187.34  Aligned_cols=180  Identities=18%  Similarity=0.226  Sum_probs=127.8

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA  399 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~  399 (591)
                      ..+.+++||||+||||.+.+++.+|+++..+++.|   +++++|+|+.|++.+....+...+. ..+...+.+.|+++.+
T Consensus        13 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~   91 (223)
T 1q0p_A           13 SGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEAD-SSNADWVTKQLNEINY   91 (223)
T ss_dssp             --CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGG-GGCHHHHHHHHHTCCT
T ss_pred             CCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCC-CCCHHHHHHHHHhccc
Confidence            35789999999999999999999999999998765   4578999999999988765432222 2234455566666664


Q ss_pred             -----CCCCchHHHHHHHHHhhhcCC--------CCccEEEEEecCCCC---ChhhHHHHHHHHH------hcCCCCCCe
Q 007718          400 -----GGGTNILLPLKQAIKLLSDTS--------ESIPLIFLITDGTVG---DERGICNEIKSYL------TNTRSISPR  457 (591)
Q Consensus       400 -----~GgT~l~~aL~~a~~~l~~~~--------~~~~~IillTDG~~~---~~~~i~~~v~~~~------~~~~~~~~r  457 (591)
                           +|+|++..||+.|.+.+....        +..+.|||+|||..+   +.....+.+++..      ......+++
T Consensus        92 ~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  171 (223)
T 1q0p_A           92 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLD  171 (223)
T ss_dssp             TSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEE
T ss_pred             ccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCcE
Confidence                 699999999999999887432        355689999999987   3444455555442      223345689


Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC--EEEEcCCCCchHHHHHHHHHHh
Q 007718          458 ICTFGVGLYCNHYFLQILAQIGRG--YYDSAYDPGSVDYRIRRFFTAA  503 (591)
Q Consensus       458 i~t~GiG~~~~~~lL~~LA~~~~G--~~~~v~~~~~l~~~~~~~~~~~  503 (591)
                      ||+||+|...+...|+.||..++|  .++.+.+.+++...+.+++++.
T Consensus       172 i~~igvG~~~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~~~i~~~s  219 (223)
T 1q0p_A          172 VYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDES  219 (223)
T ss_dssp             EEEEECSSCCCHHHHHHHSCCCTTCCCEEETTC---------------
T ss_pred             EEEEEecCcCCHHHHHHHhcCCCCCceEEEcCCHHHHHHHHHHHhccc
Confidence            999999999999999999999999  8999999888988877777653

>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=2.1e-20  Score=181.66  Aligned_cols=175  Identities=22%  Similarity=0.276  Sum_probs=135.7

Q ss_pred             CccCceEEEEEeCCcCCCcc-----hHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhc
Q 007718          322 KVFRKDVVFLVDVSGSMQGV-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS  396 (591)
Q Consensus       322 ~~~~~~ivfviD~SgSM~g~-----~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~  396 (591)
                      +..+.+++||||+||||.+.     +++.+|+++..++..++ +++|+|+.|++++..+.+..  .+.+.+..+++.+..
T Consensus         8 ~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~~--~~~~~~~~~l~~l~~   84 (218)
T 3ibs_A            8 KRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPIT--SDYISAKMFLESISP   84 (218)
T ss_dssp             --CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEEE--SCHHHHHHHHHTCCG
T ss_pred             ccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCCC--CCHHHHHHHHHhcCc
Confidence            35688999999999999975     89999999999999997 89999999999988776532  345555555444432


Q ss_pred             -CCCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCC----------
Q 007718          397 -LVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGL----------  465 (591)
Q Consensus       397 -l~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~----------  465 (591)
                       ....|+|++..||+.|.+.+...+...+.|||+|||..+.. ...+.++.. .   ..+++||+||+|.          
T Consensus        85 ~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-~~~~~~~~~-~---~~~i~v~~igig~~~~~~~~~~g  159 (218)
T 3ibs_A           85 SLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-GAVEAAKAA-A---EKGIQVSVLGVGMPEGAPIPVEG  159 (218)
T ss_dssp             GGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-CHHHHHHHH-H---TTTEEEEEEEESCTTCEECBCTT
T ss_pred             ccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-cHHHHHHHH-H---hcCCEEEEEEecCCCCCcccccC
Confidence             22369999999999999988765567789999999998765 333333332 2   2469999999997          


Q ss_pred             ---------------CCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhc
Q 007718          466 ---------------YCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAAS  504 (591)
Q Consensus       466 ---------------~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~  504 (591)
                                     ..|..+|+.||+.++|.|+++.+..+....+.+.+.++.
T Consensus       160 ~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~i~~l~  213 (218)
T 3ibs_A          160 TNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISKMA  213 (218)
T ss_dssp             SSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHHH
T ss_pred             CCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHHHHHHHHhh
Confidence                           678999999999999999999986666666666666554

>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*

Probab=99.84  E-value=2.4e-20  Score=187.28  Aligned_cols=176  Identities=20%  Similarity=0.195  Sum_probs=136.3

Q ss_pred             cCceEEEEEeCCcCCCcchH-HHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcC--
Q 007718          324 FRKDVVFLVDVSGSMQGVLL-EQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSL--  397 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i-~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l--  397 (591)
                      .+.|++||||.||||.+..+ +.+|+++..+++.|.   ++++|+|+.|++.+..+.+... .+..+...+.+.|+++  
T Consensus        17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~-~~~~~~~~~~~~i~~l~~   95 (266)
T 4hqo_A           17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGS-GQSIDKRQALSKVTELRK   95 (266)
T ss_dssp             CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTS-HHHHCHHHHHHHHHHHHH
T ss_pred             CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCC-CCccCHHHHHHHHHHhhh
Confidence            46899999999999998888 599999999999997   6899999999999987765322 2222345555666666  


Q ss_pred             --CCCCCCchHHHHHHHHHhhhcC---CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHH
Q 007718          398 --VAGGGTNILLPLKQAIKLLSDT---SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFL  472 (591)
Q Consensus       398 --~~~GgT~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL  472 (591)
                        .++|+|++..||+.|.+++...   ++..+.|||||||.+++...+.+.++....    .+++||+||+|.+.+..+|
T Consensus        96 ~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~~----~gi~i~~iGiG~~~~~~~L  171 (266)
T 4hqo_A           96 TYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQ----RNVRLAVIGIGQGINHQFN  171 (266)
T ss_dssp             HCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSCHHHHHHHHHHHHH----TTCEEEEEECSSSCCHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCCchHHHHHHHHHHH----CCCEEEEEecCcccCHHHH
Confidence              5789999999999999888653   345679999999999876666555554432    3599999999999999999


Q ss_pred             HHHHHhC--C--CEEEEcCCCCchHHHHHHHHHHhc
Q 007718          473 QILAQIG--R--GYYDSAYDPGSVDYRIRRFFTAAS  504 (591)
Q Consensus       473 ~~LA~~~--~--G~~~~v~~~~~l~~~~~~~~~~~~  504 (591)
                      +.||..+  +  +.++++.+.+++.+.+.++.+++.
T Consensus       172 ~~iA~~~~~~g~~~~~~~~d~~~L~~i~~~l~~~iC  207 (266)
T 4hqo_A          172 RLIAGCRPREPNCKFYSYADWNEAVALIKPFIAKVC  207 (266)
T ss_dssp             HHHHTCCTTCSSCTTEECSCHHHHHHHHHHHHCCCE
T ss_pred             HHhhCCCCCCCCCCeEEecCHHHHHHHHHHHHhhhc
Confidence            9999875  2  367777777666655555555444

>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*

Probab=99.84  E-value=6.6e-20  Score=175.92  Aligned_cols=167  Identities=14%  Similarity=0.135  Sum_probs=132.6

Q ss_pred             CccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718          322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV  398 (591)
Q Consensus       322 ~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~  398 (591)
                      ...+.|++||||.||||.+.+++.+|+++..+++.|   ++++||+|+.|++++....+.....+.+   .+.+.|+++.
T Consensus        18 ~~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~---~~~~~i~~l~   94 (199)
T 3zqk_A           18 NSMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSKG---DILQRLREIR   94 (199)
T ss_dssp             -CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSCCCHH---HHHHHHHHCC
T ss_pred             CCCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCcCCHH---HHHHHHHhCc
Confidence            356899999999999999999999999999999999   4789999999999998877654333444   4455566677


Q ss_pred             CC-C-CCchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHH
Q 007718          399 AG-G-GTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYF  471 (591)
Q Consensus       399 ~~-G-gT~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~l  471 (591)
                      .. | +|+++.||+.|.+.+..     +++..+.|||+|||...+.-.      +     ...+++||+||+|.+.|..+
T Consensus        95 ~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~------~-----~~~~v~v~~iGiG~~~~~~~  163 (199)
T 3zqk_A           95 YQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK------R-----LPGDIQVVPIGVGPNANVQE  163 (199)
T ss_dssp             CCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC------C-----CCTTEEEEEEEESTTCCHHH
T ss_pred             CCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH------H-----HhCCCEEEEEEcCCCCCHHH
Confidence            65 4 59999999999885422     134457999999999765321      0     02469999999999999999


Q ss_pred             HHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhc
Q 007718          472 LQILAQIGRGYYDSAYDPGSVDYRIRRFFTAAS  504 (591)
Q Consensus       472 L~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~  504 (591)
                      |+.||. +++ ++++.+.+++...+.+++.+++
T Consensus       164 L~~iA~-~~~-~~~~~~~~~L~~~~~~l~~~~c  194 (199)
T 3zqk_A          164 LERIGW-PNA-PILIQDFETLPREAPDLVLQRC  194 (199)
T ss_dssp             HHHHHT-TSC-CEEESCTTTHHHHHHHHHHHHH
T ss_pred             HHHHhC-CCc-eEEeCCHHHHHHHHHHHHHhhc
Confidence            999998 444 4588999999999999888775

>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G

Probab=99.82  E-value=2.3e-20  Score=178.17  Aligned_cols=175  Identities=17%  Similarity=0.173  Sum_probs=135.4

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-CC
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GG  401 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~G  401 (591)
                      .+.+++||||.||||.+.+++.+|+++..+++.|. ++++|+|+.|++++....+...   ..+...+.+.|+++.. +|
T Consensus         4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~~---~~~~~~~~~~i~~l~~~~g   80 (194)
T 1mf7_A            4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKE---FQNNPNPRSLVKPITQLLG   80 (194)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHHH---HHHSCCHHHHHTTCCCCCS
T ss_pred             CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecCC---cCCHHHHHHHHHhCcCCCC
Confidence            46899999999999999899999999999999995 5789999999999887654321   1233445666788875 69


Q ss_pred             CCchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC----HHH
Q 007718          402 GTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLYCN----HYF  471 (591)
Q Consensus       402 gT~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~-~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~----~~l  471 (591)
                      +|++..||+.|.+.+..     +++..+.|||+|||.++ +.....+.++.. .   ..+++||+||+|...+    ...
T Consensus        81 ~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~~~-~---~~gi~v~~igvG~~~~~~~~~~~  156 (194)
T 1mf7_A           81 RTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEA-D---REGVIRYVIGVGDAFRSEKSRQE  156 (194)
T ss_dssp             CBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHH-H---HTTEEEEEEEESGGGCSHHHHHH
T ss_pred             CchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHHHH-H---HCCCEEEEEEecccccccccHHH
Confidence            99999999999975432     13346789999999987 443222222222 1   1358999999999876    789


Q ss_pred             HHHHHHhC-CCEEEEcCCCCchHHHHHHHHHHhcc
Q 007718          472 LQILAQIG-RGYYDSAYDPGSVDYRIRRFFTAASS  505 (591)
Q Consensus       472 L~~LA~~~-~G~~~~v~~~~~l~~~~~~~~~~~~~  505 (591)
                      |+.||..+ +|.++.+.+.+++...+.++.++++.
T Consensus       157 L~~iA~~~~~~~~~~~~~~~~l~~~~~~i~~~ic~  191 (194)
T 1mf7_A          157 LNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC  191 (194)
T ss_dssp             HHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHT
T ss_pred             HHHHhCCCCcccEEEeCCHHHHHHHHHHHHHHHhh
Confidence            99999986 57888899999999888888877754

>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A

Probab=99.82  E-value=2.2e-19  Score=181.74  Aligned_cols=179  Identities=19%  Similarity=0.162  Sum_probs=141.1

Q ss_pred             cCceEEEEEeCCcCCCcchH-HHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeeecCccc--CCHHHHHHHHHHHh-c
Q 007718          324 FRKDVVFLVDVSGSMQGVLL-EQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKL--ASQGTIINATQWLS-S  396 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i-~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~-~  396 (591)
                      .+.|++||||.||||.+..+ +.+|+++..+++.|..   +++|+|+.|++++....+....  .+.+.+..+++.+. .
T Consensus        20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~~i~~l~~~   99 (281)
T 4hqf_A           20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLST   99 (281)
T ss_dssp             SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSCSSCHHHHHHHHHHHHHT
T ss_pred             CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccCccCHHHHHHHHHHHhhc
Confidence            57899999999999998777 8999999999999986   7899999999999776553322  23555555555554 2


Q ss_pred             CCCCCCCchHHHHHHHHHhhhcC---CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718          397 LVAGGGTNILLPLKQAIKLLSDT---SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ  473 (591)
Q Consensus       397 l~~~GgT~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~  473 (591)
                      ...+|+|++..||+.|.+.+...   ++..+.|||||||..++...+.+.++....    .+++||+||+|.+.+..+|+
T Consensus       100 ~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~~~~~~~~~~l~~----~gv~i~~igiG~~~~~~~L~  175 (281)
T 4hqf_A          100 NLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSIQDSLKESRKLSD----RGVKIAVFGIGQGINVAFNR  175 (281)
T ss_dssp             TGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCHHHHHHHHHHHHH----TTCEEEEEEESSSCCHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCcHHHHHHHHHHHH----CCCEEEEEeCCCccCHHHHH
Confidence            34579999999999998887653   235679999999999876555555554432    35999999999999999999


Q ss_pred             HHHHhC--CC--EEEEcCCCCchHHHHHHHHHHhccc
Q 007718          474 ILAQIG--RG--YYDSAYDPGSVDYRIRRFFTAASSV  506 (591)
Q Consensus       474 ~LA~~~--~G--~~~~v~~~~~l~~~~~~~~~~~~~p  506 (591)
                      .||...  +|  .++.+.+.+++...+..+..++...
T Consensus       176 ~iA~~~~~~g~~~~~~~~~~~~L~~~~~~l~~~iC~~  212 (281)
T 4hqf_A          176 FLVGCHPSDGKCNLYADSAWENVKNVIGPFMKAVCVE  212 (281)
T ss_dssp             HHTTSCSSSSCCTTEEEECGGGHHHHHHHHHHHHHHH
T ss_pred             hhhCCCCCCCCCceEEecchhhhhcccCCcccccCCC
Confidence            999874  44  7788889899988888888777654

>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*

Probab=99.82  E-value=2.4e-19  Score=168.94  Aligned_cols=173  Identities=17%  Similarity=0.202  Sum_probs=130.2

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHh-cCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCC
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG  402 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~-L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~Gg  402 (591)
                      .+.+++||+|+||||.+..+. .+++++.++.. +.++++|+|+.|+++.....+..  .+.+.+..+++.+..+.++|+
T Consensus         5 ~~~dvv~vlD~SgSM~~~~~~-~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~g~   81 (182)
T 1shu_X            5 RAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLT--GDRGKISKGLEDLKRVSPVGE   81 (182)
T ss_dssp             SCEEEEEEEECSGGGGGGHHH-HHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE--CCHHHHHHHHHHHHTCCCCSC
T ss_pred             CceeEEEEEECCCCcccCHHH-HHHHHHHHHHHhcCCCceEEEEEeCCCceEEECCC--CCHHHHHHHHHhcccCCCCCC
Confidence            578999999999999986553 34445555444 45789999999999988766532  567788888888887778899


Q ss_pred             CchHHHHHHHHHhhhcC--CCCccEEEEEecCCCCChhh-HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007718          403 TNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERG-ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG  479 (591)
Q Consensus       403 T~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~~-i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~  479 (591)
                      |++..||+.|.+.+...  ++..+.|||+|||..++... ......+.+.   ..+++||+||+| ..+...|+.||..+
T Consensus        82 T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~---~~~i~i~~igvg-~~~~~~L~~ia~~~  157 (182)
T 1shu_X           82 TYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISR---SLGASVYCVGVL-DFEQAQLERIADSK  157 (182)
T ss_dssp             CCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHH---HTTCEEEEEECS-SCCHHHHHHHSSSG
T ss_pred             chHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHH---hCCCEEEEEeCC-cCCHHHHHHHhCCC
Confidence            99999999999988654  35668999999999875431 1122222222   235999999999 56899999999999


Q ss_pred             CCEEEEcCCCCchHHHHHHHHHHh
Q 007718          480 RGYYDSAYDPGSVDYRIRRFFTAA  503 (591)
Q Consensus       480 ~G~~~~v~~~~~l~~~~~~~~~~~  503 (591)
                      +|.|+...+.+++...+.++.+++
T Consensus       158 ~~~~~~~~~~~~L~~~~~~i~~~i  181 (182)
T 1shu_X          158 EQVFPVKGGFQALKGIINSILAQS  181 (182)
T ss_dssp             GGEEESSSTTHHHHHHHHHHHHTB
T ss_pred             CceEEccCCHHHHHHHHHHHHhcc
Confidence            887776557777877777666543

>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1

Probab=99.82  E-value=1.1e-19  Score=177.61  Aligned_cols=173  Identities=14%  Similarity=0.091  Sum_probs=135.7

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG  400 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~  400 (591)
                      .+.+++||||.||||.  .++.+|+++..+++.|.   ++++|+|+.|++++....+...   ..+...+.+.|+++...
T Consensus        21 ~~~div~vlD~SgSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~---~~~~~~~~~~i~~l~~~   95 (223)
T 2b2x_A           21 TQLDIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNK---YSSTEEVLVAANKIVQR   95 (223)
T ss_dssp             -CEEEEEEEECSTTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTT---CCSHHHHHHHHTTCCCC
T ss_pred             CcceEEEEEECCCChh--hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCC---CCCHHHHHHHHHhhhcc
Confidence            4789999999999998  48999999999999885   6899999999999887765422   23445566677887765


Q ss_pred             C--CCchHHHHHHHHHhh-h----cCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC-----
Q 007718          401 G--GTNILLPLKQAIKLL-S----DTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN-----  468 (591)
Q Consensus       401 G--gT~l~~aL~~a~~~l-~----~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~-----  468 (591)
                      |  +|++..||+.|.+.+ .    ..++..+.|||+|||..++.....+.++.. .   ..+++||+||+|...|     
T Consensus        96 gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~-~---~~gi~v~~igvG~~~~~~~~~  171 (223)
T 2b2x_A           96 GGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQDC-E---DENIQRFSIAILGHYNRGNLS  171 (223)
T ss_dssp             CCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGGGHHHHHHHH-H---TTTEEEEEEEECGGGC---CC
T ss_pred             CCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHH-H---HCCCEEEEEEecCcccccccc
Confidence            4  499999999999873 3    124556799999999998765444433333 2   2469999999998766     


Q ss_pred             ----HHHHHHHHHh-CCCEEEEcCCCCchHHHHHHHHHHhcc
Q 007718          469 ----HYFLQILAQI-GRGYYDSAYDPGSVDYRIRRFFTAASS  505 (591)
Q Consensus       469 ----~~lL~~LA~~-~~G~~~~v~~~~~l~~~~~~~~~~~~~  505 (591)
                          ...|+.||.. ++|.|+.+.+.+++...+..+.++++.
T Consensus       172 ~~~~~~~L~~iA~~p~~g~~~~~~~~~~L~~i~~~i~~~ic~  213 (223)
T 2b2x_A          172 TEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFA  213 (223)
T ss_dssp             CHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC-
T ss_pred             chhHHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhhcC
Confidence                4789999998 889999999999999888877777654

>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1

Probab=99.81  E-value=5.1e-20  Score=176.09  Aligned_cols=176  Identities=19%  Similarity=0.180  Sum_probs=135.6

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc-CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC-CC
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AG  400 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L-~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-~~  400 (591)
                      ..+.+++||||+||||.+..++.++++++.+++.| +++++|+|+.|++.+....+..   +..+...+.+.|+.+. .+
T Consensus         7 ~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~---~~~~~~~~~~~i~~l~~~~   83 (198)
T 1n3y_A            7 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE---EFRRSSNPLSLLASVHQLQ   83 (198)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHH---HHHHCSSGGGGGTTCCCCC
T ss_pred             CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecC---ccCCHHHHHHHHhcCcCCC
Confidence            35789999999999999888999999999999999 6899999999999987665431   1223334555677766 46


Q ss_pred             CCCchHHHHHHHHHhh-hc----CCCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC----CHH
Q 007718          401 GGTNILLPLKQAIKLL-SD----TSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLYC----NHY  470 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l-~~----~~~~~~~IillTDG~~~-~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~----~~~  470 (591)
                      |+|++..||+.|.+.+ ..    .++..+.|||+|||.++ +.....+.++.. .   ..+++||+||+|...    +..
T Consensus        84 g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~-~---~~gi~i~~igvG~~~~~~~~~~  159 (198)
T 1n3y_A           84 GFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMA-D---AAGIIRYAIGVGLAFQNRNSWK  159 (198)
T ss_dssp             SCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHH-H---HTTCEEEEEEESGGGGSSTTHH
T ss_pred             CCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHH-H---HCCCEEEEEEccccccccccHH
Confidence            9999999999999544 32    13456799999999987 433333333322 2   235899999999887    689


Q ss_pred             HHHHHHHhCCCEE-EEcCCCCchHHHHHHHHHHhcc
Q 007718          471 FLQILAQIGRGYY-DSAYDPGSVDYRIRRFFTAASS  505 (591)
Q Consensus       471 lL~~LA~~~~G~~-~~v~~~~~l~~~~~~~~~~~~~  505 (591)
                      .|+.||..++|.| +.+.+.+++...+.++.++++.
T Consensus       160 ~L~~iA~~~~g~~~~~~~~~~~l~~~~~~i~~~ic~  195 (198)
T 1n3y_A          160 ELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA  195 (198)
T ss_dssp             HHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHT
T ss_pred             HHHHHHcCCCcccEEEeCCHHHHHHHHHHHHhheec
Confidence            9999999999986 7788888898888888877653

>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A

Probab=99.81  E-value=1.7e-19  Score=174.80  Aligned_cols=174  Identities=14%  Similarity=0.097  Sum_probs=134.8

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG  400 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~  400 (591)
                      .+.+++||||.||||.  .++.+|+++..+++.|.   ++++|+|+.|++++....+...   ..+...+.+.|+++.+.
T Consensus         6 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~---~~~~~~~~~~i~~l~~~   80 (213)
T 1pt6_A            6 TQLDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNK---YSSTEEVLVAAKKIVQR   80 (213)
T ss_dssp             -CEEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTT---CSSHHHHHHHHHTCCCC
T ss_pred             CCccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEeccc---cCCHHHHHHHHHhccCC
Confidence            3689999999999997  58999999999999885   6899999999999987766422   23445566667777765


Q ss_pred             -C-CCchHHHHHHHHHhh-h----cCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC-----
Q 007718          401 -G-GTNILLPLKQAIKLL-S----DTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN-----  468 (591)
Q Consensus       401 -G-gT~l~~aL~~a~~~l-~----~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~-----  468 (591)
                       | +|++..||+.|.+.+ .    ..++..+.|||+|||..++.....+.++.. .+   .+++||+||+|...|     
T Consensus        81 ~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~-~~---~gi~i~~igig~~~~~~~~~  156 (213)
T 1pt6_A           81 GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQDC-ED---ENIQRFSIAILGSYNRGNLS  156 (213)
T ss_dssp             CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHHHH-HH---TTEEEEEEEECHHHHHTTCC
T ss_pred             CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHH-HH---CCCEEEEEEecccccccccc
Confidence             4 489999999999874 3    124567799999999998765443333332 22   358999999997644     


Q ss_pred             ----HHHHHHHHHh-CCCEEEEcCCCCchHHHHHHHHHHhccc
Q 007718          469 ----HYFLQILAQI-GRGYYDSAYDPGSVDYRIRRFFTAASSV  506 (591)
Q Consensus       469 ----~~lL~~LA~~-~~G~~~~v~~~~~l~~~~~~~~~~~~~p  506 (591)
                          ...|+.||.. ++|.++.+.+.+++...+..+.++++..
T Consensus       157 ~~~~~~~L~~iA~~~~~g~~~~~~~~~~l~~i~~~l~~~i~~~  199 (213)
T 1pt6_A          157 TEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFAL  199 (213)
T ss_dssp             CHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC-
T ss_pred             chhhHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhheec
Confidence                4789999998 6899999999999998888888877644

>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1

Probab=99.80  E-value=2.6e-19  Score=169.14  Aligned_cols=172  Identities=17%  Similarity=0.161  Sum_probs=131.0

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc-CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCC
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGG  401 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L-~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~G  401 (591)
                      ..+.|++||||.||||.+ .+...+++++.++..+ .++++|+|+.|++++....+..  .+.+.+..+++.+..+.++|
T Consensus         5 ~~~~div~vlD~SgSM~~-~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~--~~~~~~~~~i~~l~~~~~~g   81 (185)
T 3n2n_F            5 YGGFDLYFILDKSGSVLH-HWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLT--EDREQIRQGLEELQKVLPGG   81 (185)
T ss_dssp             BSEEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE--CCHHHHHHHHHHHHTCCCCS
T ss_pred             CCCeeEEEEEeCCCChhh-hHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccC--CCHHHHHHHHHHHhhhcCCC
Confidence            357899999999999987 5777888888777664 5689999999999998776543  37788888888887777789


Q ss_pred             CCchHHHHHHHHHhhhc----CCCCccEEEEEecCCCCChhh--HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHH
Q 007718          402 GTNILLPLKQAIKLLSD----TSESIPLIFLITDGTVGDERG--ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQIL  475 (591)
Q Consensus       402 gT~l~~aL~~a~~~l~~----~~~~~~~IillTDG~~~~~~~--i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~L  475 (591)
                      +|++..||+.|.+.+..    .....+.|||+|||.+++...  .....+.. .   ..+++||+||+| +.+...|+.|
T Consensus        82 ~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~-~---~~gi~i~~igvg-~~~~~~L~~i  156 (185)
T 3n2n_F           82 DTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRS-R---DLGAIVYAVGVK-DFNETQLARI  156 (185)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHHHH-H---HTTEEEEEEECS-SCCHHHHTTT
T ss_pred             CccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHHHH-H---HCCCEEEEEEec-cCCHHHHHHH
Confidence            99999999999997732    123567999999999875432  12222222 2   235999999999 7799999999


Q ss_pred             HHhCCCEEEEcCC-CCchHHHHHHHHHHh
Q 007718          476 AQIGRGYYDSAYD-PGSVDYRIRRFFTAA  503 (591)
Q Consensus       476 A~~~~G~~~~v~~-~~~l~~~~~~~~~~~  503 (591)
                      |..+ |.++.+.+ .+++...+.++.+++
T Consensus       157 A~~~-~~~~~~~~~~~~L~~~~~~i~~~i  184 (185)
T 3n2n_F          157 ADSK-DHVFPVNDGFQALQGIIHSILKKS  184 (185)
T ss_dssp             SSSG-GGEEEHHHHHHHHHHHHHHHHHTB
T ss_pred             hCCC-CCeEEeccHHHHHHHHHHHHHHhc
Confidence            9765 66666776 677777666666554

>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A

Probab=99.80  E-value=1.1e-18  Score=165.74  Aligned_cols=163  Identities=15%  Similarity=0.157  Sum_probs=124.9

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-  399 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-  399 (591)
                      .+.+++||+|+||||.+.+++.+|+++..+++.+..   +++|+|+.|++++....+.....+.+.+   .+.++.+.. 
T Consensus         4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~---~~~i~~l~~~   80 (189)
T 1atz_A            4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHL---LSLVDVMQRE   80 (189)
T ss_dssp             CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHH---HHHHHTCCCC
T ss_pred             CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCCCCHHHH---HHHHHhCcCC
Confidence            468999999999999999999999999999999863   4799999999999876664333444444   455666765 


Q ss_pred             CCCCchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHH
Q 007718          400 GGGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQI  474 (591)
Q Consensus       400 ~GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~  474 (591)
                      +|+|++..||+.|.+.+...     ++..+.+|++|||..++.  ..+.++.. .+   .+++||+||+|...|...|+.
T Consensus        81 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~--~~~~~~~~-~~---~gi~v~~igvG~~~~~~~L~~  154 (189)
T 1atz_A           81 GGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS--VDAAADAA-RS---NRVTVFPIGIGDRYDAAQLRI  154 (189)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC--CHHHHHHH-HH---TTEEEEEEEESSSSCHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch--HHHHHHHH-HH---CCCEEEEEEcCCcCCHHHHHH
Confidence            69999999999999987542     234456888999987643  22222222 21   359999999999999999999


Q ss_pred             HHHhCCC-EEEEcCCCCchHHH
Q 007718          475 LAQIGRG-YYDSAYDPGSVDYR  495 (591)
Q Consensus       475 LA~~~~G-~~~~v~~~~~l~~~  495 (591)
                      ||..++| +++.+.+.+++...
T Consensus       155 iA~~~~~~~~~~~~~~~~~~~l  176 (189)
T 1atz_A          155 LAGPAGDSNVVKLQRIEDLPTM  176 (189)
T ss_dssp             HTGGGGGGGCEEESSTTHHHHH
T ss_pred             HHCCCcccCEEEecChhhHHHH
Confidence            9999876 45667777777654

>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A

Probab=99.80  E-value=7.9e-19  Score=168.39  Aligned_cols=172  Identities=17%  Similarity=0.095  Sum_probs=133.1

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC-
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG-  400 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~-  400 (591)
                      +.+++||||.||||.  .++.+|+++..+++.+.   ++++|+|+.|++++....+....   .+...+.+.|+++.+. 
T Consensus         6 ~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~~---~~~~~~~~~i~~l~~~~   80 (200)
T 1v7p_C            6 LIDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTY---KTKEEMIVATSQTSQYG   80 (200)
T ss_dssp             CEEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTC---SSHHHHHHHHHHCCCCC
T ss_pred             cccEEEEEECCCCcc--cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCCc---CCHHHHHHHHHhhhccC
Confidence            689999999999997  49999999999999996   68999999999999876654322   2445566667778765 


Q ss_pred             C-CCchHHHHHHHHHh-hhc----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcC-----CCCC-
Q 007718          401 G-GTNILLPLKQAIKL-LSD----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVG-----LYCN-  468 (591)
Q Consensus       401 G-gT~l~~aL~~a~~~-l~~----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG-----~~~~-  468 (591)
                      | +|++..||+.|.+. +..    +++..+.|||+|||..++.....+.++.. .+   .+++||+||+|     ...+ 
T Consensus        81 G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~-~~---~gi~i~~igvg~~~~~~~~~~  156 (200)
T 1v7p_C           81 GDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQC-NH---DNILRFGIAVLGYLNRNALDT  156 (200)
T ss_dssp             CSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHH-HH---TTEEEEEEEECHHHHHTTCCC
T ss_pred             CCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHHH-HH---CCCEEEEEEecccccccccch
Confidence            4 69999999999986 432    13456789999999998765443333333 22   35999999994     4555 


Q ss_pred             ---HHHHHHHHHhCCCEE-EEcCCCCchHHHHHHHHHHhcc
Q 007718          469 ---HYFLQILAQIGRGYY-DSAYDPGSVDYRIRRFFTAASS  505 (591)
Q Consensus       469 ---~~lL~~LA~~~~G~~-~~v~~~~~l~~~~~~~~~~~~~  505 (591)
                         ...|+.||..++|.| +.+.+.+++...+..+.++++.
T Consensus       157 ~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~i~~~i~~~ic~  197 (200)
T 1v7p_C          157 KNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFS  197 (200)
T ss_dssp             HHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHhCCccHhcEEEcCCHHHHHHHHHHHHhhhcC
Confidence               567999999998865 6688889999888888877753

>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...

Probab=99.79  E-value=6.4e-20  Score=172.96  Aligned_cols=165  Identities=14%  Similarity=0.078  Sum_probs=124.8

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC-CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-CCC
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GGG  402 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~-~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~Gg  402 (591)
                      |.|++||+|.||||.+.+++.+|+++..+++.|.+ +++|+|+.|++++....+.....+.+++..++   +.+.. .|+
T Consensus         2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~~---~~i~~~~g~   78 (179)
T 1mjn_A            2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALL---KHVKHMLLL   78 (179)
T ss_dssp             CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHHHHHHCCHHHHH---TTCCCCCBC
T ss_pred             CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCcccCCHHHHHHHH---HhcccCCCC
Confidence            57999999999999998999999999999999965 56999999999988765532222223444554   44443 499


Q ss_pred             CchHHHHHHHHH-hhhc----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC----HHHHH
Q 007718          403 TNILLPLKQAIK-LLSD----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----HYFLQ  473 (591)
Q Consensus       403 T~l~~aL~~a~~-~l~~----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~----~~lL~  473 (591)
                      |+++.||+.|.+ ++..    +++..+.+||+|||..++.....       .   ..+++||+||+|...+    ...|+
T Consensus        79 T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~~~-------~---~~~i~i~~igvG~~~~~~~~~~~L~  148 (179)
T 1mjn_A           79 TNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNID-------A---AKDIIRYIIGIGKHFQTKESQETLH  148 (179)
T ss_dssp             CCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCCG-------G---GTTSEEEEEEESGGGCSHHHHHTTG
T ss_pred             ChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcchH-------H---HCCCEEEEEEccccccccccHHHHH
Confidence            999999999996 4432    13456799999999987654321       1   2359999999998877    37899


Q ss_pred             HHHHhCCCE-EEEcCCCCchHHHHHHHHHH
Q 007718          474 ILAQIGRGY-YDSAYDPGSVDYRIRRFFTA  502 (591)
Q Consensus       474 ~LA~~~~G~-~~~v~~~~~l~~~~~~~~~~  502 (591)
                      .||..++|. ++.+.+.+++...+.++.++
T Consensus       149 ~iA~~~~~~~~~~~~~~~~L~~i~~~i~~~  178 (179)
T 1mjn_A          149 KFASKPASEFVKILDTFEKLKDLCTELQKK  178 (179)
T ss_dssp             GGSCSCHHHHEEEESSGGGSCCHHHHHHHH
T ss_pred             HHhCCccHhcEEEeCCHHHHHHHHHHHHhh
Confidence            999988874 57788888887766666554

>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}

Probab=99.77  E-value=4.6e-18  Score=160.02  Aligned_cols=145  Identities=19%  Similarity=0.200  Sum_probs=104.0

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC-CC
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AG  400 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-~~  400 (591)
                      +.+++||||.||||.+.+++.+|+++..+++.|.   ++++|+|+.|++++....+..... ..+.+.+.+.|+++. .+
T Consensus        17 ~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~~-~~~~~~~~~~i~~l~~~~   95 (178)
T 2xgg_A           17 QLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPN-AVDKQLAAHAVLDMPYKK   95 (178)
T ss_dssp             CEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSGG-GSCHHHHHHHHHHCCCCC
T ss_pred             CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCCC-ccCHHHHHHHHHhCCCCC
Confidence            7999999999999999999999999999999986   358999999999988766543222 114455566677777 56


Q ss_pred             CCCchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHH
Q 007718          401 GGTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQI  474 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~  474 (591)
                      |+|++..||+.|.+.+..     .++..+.|||+|||.+++...+.+.++.. .+   .+++||+||+|..+|..+|+.
T Consensus        96 g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~~l-~~---~gi~v~~igvG~~~~~~~l~~  170 (178)
T 2xgg_A           96 GSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAKEI-RE---LGGIVTVLAVGHYVAAALVPR  170 (178)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHHHH-HH---TTCEEEEEECC----------
T ss_pred             CCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHHHH-HH---CCCEEEEEEcCCcCCHHHHhc
Confidence            999999999999997532     13456799999999988654343333333 22   359999999999999988774

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=99.77  E-value=9e-19  Score=192.13  Aligned_cols=178  Identities=19%  Similarity=0.196  Sum_probs=138.2

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA  399 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~  399 (591)
                      ..+.|++||||.||||.+.+++.+|+++..+++.|   +++++|+|+.|++++....+... ....+.+.+.+.|+++.+
T Consensus         7 ~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~-~~~~~~~~~~~~l~~l~~   85 (509)
T 2odp_A            7 SGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLN-DNSRDMTEVISSLENANY   85 (509)
T ss_dssp             SSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTS-GGGGCHHHHHHHHHTCCG
T ss_pred             CCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccC-CCCCCHHHHHHHHHhccc
Confidence            35789999999999999999999999999999988   78999999999999988665422 222345566666777766


Q ss_pred             C-----CCCchHHHHHHHHHhhhcC-----------CCCccEEEEEecCCCCCh---hhHHHHHHHHHhc--CCCCCCeE
Q 007718          400 G-----GGTNILLPLKQAIKLLSDT-----------SESIPLIFLITDGTVGDE---RGICNEIKSYLTN--TRSISPRI  458 (591)
Q Consensus       400 ~-----GgT~l~~aL~~a~~~l~~~-----------~~~~~~IillTDG~~~~~---~~i~~~v~~~~~~--~~~~~~ri  458 (591)
                      .     |||++..||+.|.+++...           .+..+.|||+|||..++.   ....+.+++.+..  ....+++|
T Consensus        86 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i  165 (509)
T 2odp_A           86 KDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDI  165 (509)
T ss_dssp             GGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEE
T ss_pred             ccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceEE
Confidence            5     9999999999999988431           124578999999998753   3344455543321  11345899


Q ss_pred             EEEEcCCC-CCHHHHHHHHHhCCCE--EEEcCCCCchHHHHHHHHH
Q 007718          459 CTFGVGLY-CNHYFLQILAQIGRGY--YDSAYDPGSVDYRIRRFFT  501 (591)
Q Consensus       459 ~t~GiG~~-~~~~lL~~LA~~~~G~--~~~v~~~~~l~~~~~~~~~  501 (591)
                      |+||+|.. .+...|+.||..++|.  ++.+.+.+++...+.+++.
T Consensus       166 ~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i~~  211 (509)
T 2odp_A          166 YAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLD  211 (509)
T ss_dssp             EEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEE
T ss_pred             EEEEcCCCcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhhhc
Confidence            99999998 9999999999999998  8888888777766666544

>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}

Probab=99.77  E-value=4.6e-21  Score=182.20  Aligned_cols=173  Identities=20%  Similarity=0.241  Sum_probs=126.5

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc-CCCCeEEEEEeCC-ceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNG-ETHLFSSSMKLASQGTIINATQWLSSLVAG  400 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L-~~~d~f~Ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~  400 (591)
                      ..+.+++||||+||||.|.+++.+|+++..++..+ .++++|+|+.|++ ....+.+.    + .+...+.++|+.+.++
T Consensus         3 ~~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~----~-~~~~~~~~~i~~l~~~   77 (189)
T 2x31_A            3 MSDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQP----S-RSLTQTKRQLQGLPGG   77 (189)
T ss_dssp             SSCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTT----C-SCHHHHHHHHHHCCCC
T ss_pred             CCCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCC----C-CCHHHHHHHHhcCCCC
Confidence            46889999999999999999999999999999888 8899999999997 45544332    1 1456677788899999


Q ss_pred             CCCchHHHHHHHHHhhhcCC--CCccEEEEEecCCCCChhhH-------HHHHHHHHhcCCCCCCeEEEEEcCCCCCHHH
Q 007718          401 GGTNILLPLKQAIKLLSDTS--ESIPLIFLITDGTVGDERGI-------CNEIKSYLTNTRSISPRICTFGVGLYCNHYF  471 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~~~--~~~~~IillTDG~~~~~~~i-------~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~l  471 (591)
                      |+|++..||+.|++.+....  +..+.|||+|||.+++...-       .+.+.+.+......++++|+||+|.. +..+
T Consensus        78 g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~-~~~~  156 (189)
T 2x31_A           78 GGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMR-PNPA  156 (189)
T ss_dssp             BCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHS-SCSS
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCC-CHHH
Confidence            99999999999999887542  34679999999998753210       00000111111223588999999987 7778


Q ss_pred             HHHHHHhCCCEEEEcCCCCchHHHHHHHHHHh
Q 007718          472 LQILAQIGRGYYDSAYDPGSVDYRIRRFFTAA  503 (591)
Q Consensus       472 L~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~  503 (591)
                      |+.||+.++|.|+++.+  .-.+.+.+++..+
T Consensus       157 L~~iA~~~~G~~~~~~~--~~~~~~~~~~~~~  186 (189)
T 2x31_A          157 LVDLARTMDAHYIALPR--ATAHKMADVLGAA  186 (189)
T ss_dssp             SCSTTTEEEESSTTTHH--HHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCeEEECCC--cchHHHHHHHHHh
Confidence            99999999999877632  2234455555543

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=99.75  E-value=4.5e-18  Score=194.99  Aligned_cols=188  Identities=19%  Similarity=0.236  Sum_probs=146.7

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC-
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-  398 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-  398 (591)
                      ..+.|++||||.||||.+.+++.+|+++..+++.|.   .++||+|+.|++++....+... .+..+.+.+.+.|+++. 
T Consensus       241 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~-~~~~~~~~~~~~i~~l~~  319 (741)
T 3hrz_D          241 SGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSE-ADSSNADWVTKQLNEINY  319 (741)
T ss_dssp             TCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTS-GGGGCHHHHHHHHTTCCG
T ss_pred             CCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecc-cCCcCHHHHHHHHHhccc
Confidence            457899999999999999999999999999998875   4689999999999887765432 33345566777788887 


Q ss_pred             ----CCCCCchHHHHHHHHHhhhcC--------CCCccEEEEEecCCCCCh---hhHHHHHHHHH------hcCCCCCCe
Q 007718          399 ----AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVGDE---RGICNEIKSYL------TNTRSISPR  457 (591)
Q Consensus       399 ----~~GgT~l~~aL~~a~~~l~~~--------~~~~~~IillTDG~~~~~---~~i~~~v~~~~------~~~~~~~~r  457 (591)
                          .+|||++..||+.|++.+...        .+..+.|||||||+.+..   ....+.++...      ......+++
T Consensus       320 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi~  399 (741)
T 3hrz_D          320 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLD  399 (741)
T ss_dssp             GGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEE
T ss_pred             ccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCee
Confidence                689999999999999988321        123468999999988743   33334444321      122345689


Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCE--EEEcCCCCchHHHHHHHHHHhccceEEeE
Q 007718          458 ICTFGVGLYCNHYFLQILAQIGRGY--YDSAYDPGSVDYRIRRFFTAASSVFLTNM  511 (591)
Q Consensus       458 i~t~GiG~~~~~~lL~~LA~~~~G~--~~~v~~~~~l~~~~~~~~~~~~~p~~~~v  511 (591)
                      ||+||+|.+.|...|+.||+.++|.  ++.+.+.++|.+.+.++++++....+..+
T Consensus       400 i~~igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~l~~~~~~~~~CG~  455 (741)
T 3hrz_D          400 VYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCGM  455 (741)
T ss_dssp             EEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHSCTTSTTC
T ss_pred             EEEEeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHHhhccccccccccc
Confidence            9999999999999999999999995  88888889999999999988765544443

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=99.75  E-value=4.7e-18  Score=185.80  Aligned_cols=180  Identities=18%  Similarity=0.226  Sum_probs=136.2

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC---
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV---  398 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~---  398 (591)
                      |.|++||||.||||.+.+++.+|+++..+++.|   +.+++|+|+.|++++....+...+ ...+.+.+.+.|+++.   
T Consensus         1 ~~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~   79 (497)
T 1rrk_A            1 SMNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEA-DSSNADWVTKQLNEINYED   79 (497)
T ss_dssp             CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSG-GGGCHHHHHHHHHHCCGGG
T ss_pred             CeeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccccc-cccCHHHHHHHHHhCcCcc
Confidence            468999999999999999999999999999875   457999999999998776532212 1123344455556555   


Q ss_pred             --CCCCCchHHHHHHHHHhhhcC--------CCCccEEEEEecCCCCCh---hhHHHHHHHHHh------cCCCCCCeEE
Q 007718          399 --AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVGDE---RGICNEIKSYLT------NTRSISPRIC  459 (591)
Q Consensus       399 --~~GgT~l~~aL~~a~~~l~~~--------~~~~~~IillTDG~~~~~---~~i~~~v~~~~~------~~~~~~~ri~  459 (591)
                        .+|+|++..||+.|.+.+...        ++..+.|||+|||..+..   ....+.+++...      .....+++||
T Consensus        80 ~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  159 (497)
T 1rrk_A           80 HKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVY  159 (497)
T ss_dssp             SCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEE
T ss_pred             ccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCeeEE
Confidence              458999999999999998432        235679999999998743   334444443311      1122368999


Q ss_pred             EEEcCCCCCHHHHHHHHHhCCC--EEEEcCCCCchHHHHHHHHHHhcc
Q 007718          460 TFGVGLYCNHYFLQILAQIGRG--YYDSAYDPGSVDYRIRRFFTAASS  505 (591)
Q Consensus       460 t~GiG~~~~~~lL~~LA~~~~G--~~~~v~~~~~l~~~~~~~~~~~~~  505 (591)
                      +||+|...+...|+.||+.++|  .++.+.+.+++.+.+.++++....
T Consensus       160 ~igvG~~~~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~~i~~~~~  207 (497)
T 1rrk_A          160 VFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQS  207 (497)
T ss_dssp             EEECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGGGG
T ss_pred             EecCCCccCHHHHHHHhcCCCCcceEEEeCCHHHHhhhhhhcccCCCC
Confidence            9999999999999999999999  899999888888888877766543

>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*

Probab=99.62  E-value=2e-16  Score=186.34  Aligned_cols=176  Identities=18%  Similarity=0.162  Sum_probs=134.0

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCC-CeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC-CC
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQ-DSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AG  400 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~-d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-~~  400 (591)
                      ..+.||+||||.||||.+.+++.+|+++..+++.|.+. +||+|+.|++++....+.....+.+++   .+.++++. .+
T Consensus       128 ~~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~~~~~~~l---~~ai~~i~~~g  204 (1095)
T 3k6s_A          128 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNP---LSLLASVHQLQ  204 (1095)
T ss_dssp             CCCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHHHHSCSCG---GGGTTTCCCCC
T ss_pred             CCCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCcccCCHHHH---HHHHhhhhccc
Confidence            34789999999999999999999999999999999864 899999999999887654332233333   34456654 35


Q ss_pred             CCCchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC----CCHH
Q 007718          401 GGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLY----CNHY  470 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~-~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~----~~~~  470 (591)
                      |+|++..||+.|++.+...     ++..+.||++|||+.+ +.....+.++....    .+++||+||+|..    .+..
T Consensus       205 G~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r~----~GI~i~aIGVG~~~~~~~d~~  280 (1095)
T 3k6s_A          205 GFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADA----AGIIRYAIGVGLAFQNRNSWK  280 (1095)
T ss_dssp             SCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHHH----HCEEECCEEBSSGGGSTTSSH
T ss_pred             CCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHHH----CCCEEEEEecccccccccCHH
Confidence            9999999999998865321     3445799999999995 43333333333222    2589999999987    6889


Q ss_pred             HHHHHHHhCCC-EEEEcCCCCchHHHHHHHHHHhcc
Q 007718          471 FLQILAQIGRG-YYDSAYDPGSVDYRIRRFFTAASS  505 (591)
Q Consensus       471 lL~~LA~~~~G-~~~~v~~~~~l~~~~~~~~~~~~~  505 (591)
                      .|+.||..++| +++.+.+.+++.+.+.++.+++..
T Consensus       281 eL~~IAs~p~g~~vf~v~d~~~L~~i~~~L~~~Ic~  316 (1095)
T 3k6s_A          281 ELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA  316 (1095)
T ss_dssp             HHHTTSCSSTTTSCCCBSCSGGGGSSTTTHHHHHHT
T ss_pred             HHHHHHcCCCCceEEEcCCHHHHHHHHHHhhhhhhc
Confidence            99999999877 677788888888777777777653

>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}

Probab=99.57  E-value=1.2e-13  Score=131.12  Aligned_cols=155  Identities=14%  Similarity=0.128  Sum_probs=111.5

Q ss_pred             ceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHh---cCCCCeEEEEEeCCc-eEeeecCcccCCHHHHHHHHHHHhc
Q 007718          326 KDVVFLVDVSGSMQG-----VLLEQTKNALSASLSK---LNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSS  396 (591)
Q Consensus       326 ~~ivfviD~SgSM~g-----~~i~~ak~al~~~l~~---L~~~d~f~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~  396 (591)
                      ..++|+||.|+||..     ++++.+|+++..++..   .+++|+++|++|+++ +....+..  .+   .......|++
T Consensus         3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT--~d---~~~i~~~L~~   77 (192)
T 2x5n_A            3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLT--RD---YGKFLSAMHD   77 (192)
T ss_dssp             EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEE--SC---HHHHHHHHTT
T ss_pred             eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCC--CC---HHHHHHHHHc
Confidence            468999999999973     5899999999887764   367899999999984 77665432  23   4455666788


Q ss_pred             CCCCCCCchHHHHHHHHHhhhcCC---CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC-CHHHH
Q 007718          397 LVAGGGTNILLPLKQAIKLLSDTS---ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC-NHYFL  472 (591)
Q Consensus       397 l~~~GgT~l~~aL~~a~~~l~~~~---~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~-~~~lL  472 (591)
                      +.+.|+|++..||..|.+.+.+..   ...|.|+|++|+...++.+..+.++....    .+++|+++|+|... |.. |
T Consensus        78 l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~----~gi~v~~Ig~G~~~~~~~-l  152 (192)
T 2x5n_A           78 LPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKK----NNVAIDIIHIGELQNESA-L  152 (192)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHH----TTEEEEEEEESCC---CH-H
T ss_pred             CCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHH----CCCEEEEEEeCCCCccHH-H
Confidence            889999999999999999987643   12344667766664445555444444322    35999999999764 446 9


Q ss_pred             HHHHHhC----CCEEEEcCCCC
Q 007718          473 QILAQIG----RGYYDSAYDPG  490 (591)
Q Consensus       473 ~~LA~~~----~G~~~~v~~~~  490 (591)
                      +.+|+.+    +++|..+.+..
T Consensus       153 ~~la~~~n~~~~s~~~~~~~~~  174 (192)
T 2x5n_A          153 QHFIDAANSSDSCHLVSIPPSP  174 (192)
T ss_dssp             HHHHHHHCSTTCCEEEEECCCS
T ss_pred             HHHHHhccCCCceEEEEecCcc
Confidence            9999993    34566565554

>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.56  E-value=4.8e-14  Score=139.42  Aligned_cols=146  Identities=15%  Similarity=0.136  Sum_probs=112.7

Q ss_pred             eEEEEEeCCcCCCc-----chHHHHHHHHHHHHH---hcCCCCeEEEEEeCCce-EeeecCcccCCHHHHHHHHHHHhcC
Q 007718          327 DVVFLVDVSGSMQG-----VLLEQTKNALSASLS---KLNPQDSFNIIAFNGET-HLFSSSMKLASQGTIINATQWLSSL  397 (591)
Q Consensus       327 ~ivfviD~SgSM~g-----~~i~~ak~al~~~l~---~L~~~d~f~Ii~F~~~~-~~~~~~~~~~~~~~~~~a~~~i~~l  397 (591)
                      .+|||||+|+||..     ++++.+|+|+..+++   +++|.++++|++|.+.. ..+.+.  ..+   ...++..|+.+
T Consensus         5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~pl--T~D---~~~il~aL~~l   79 (268)
T 4b4t_W            5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTF--TAE---FGKILAGLHDT   79 (268)
T ss_dssp             EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEE--ESC---HHHHHHHHTTC
T ss_pred             eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCC--cch---HHHHHHHhhhc
Confidence            37999999999974     589999999999887   45789999999997764 454432  223   44566678899


Q ss_pred             CCCCCCchHHHHHHHHHhhhcC--CCCccEEEEEecCCCCC-hhhHHHHHHHHHhcCCCCCCeEEEEEcCC-CCCHHHHH
Q 007718          398 VAGGGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGD-ERGICNEIKSYLTNTRSISPRICTFGVGL-YCNHYFLQ  473 (591)
Q Consensus       398 ~~~GgT~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~-~~~i~~~v~~~~~~~~~~~~ri~t~GiG~-~~~~~lL~  473 (591)
                      +++|+|++..+|+.|+..+...  +.....||++|||..++ +..+.+.+++...+    +++|++||+|. ..|...|+
T Consensus        80 ~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~----gI~v~vIgFG~~~~n~~kLe  155 (268)
T 4b4t_W           80 QIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKN----NVAVDIINFGEIEQNTELLD  155 (268)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHH----TEEEEEEEESSCCSSCCHHH
T ss_pred             CcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEEeCCCccchHHHH
Confidence            9999999999999999998764  34456899999997654 44555555555433    49999999995 56778999


Q ss_pred             HHHHhCCC
Q 007718          474 ILAQIGRG  481 (591)
Q Consensus       474 ~LA~~~~G  481 (591)
                      .+++..+|
T Consensus       156 ~l~~~~Ng  163 (268)
T 4b4t_W          156 EFIAAVNN  163 (268)
T ss_dssp             HHHHHHCS
T ss_pred             HHHHHhcC
Confidence            99888765

>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}

Probab=99.44  E-value=4.4e-13  Score=153.80  Aligned_cols=114  Identities=22%  Similarity=0.292  Sum_probs=87.4

Q ss_pred             CccCceEEEEEeCCcCCCcc------hHHHHHHHHHHHHHhcC--CCCeEEEEEeCCceEe-----e----ec-------
Q 007718          322 KVFRKDVVFLVDVSGSMQGV------LLEQTKNALSASLSKLN--PQDSFNIIAFNGETHL-----F----SS-------  377 (591)
Q Consensus       322 ~~~~~~ivfviD~SgSM~g~------~i~~ak~al~~~l~~L~--~~d~f~Ii~F~~~~~~-----~----~~-------  377 (591)
                      ...+.+++||||.||||.+.      +++.+|+++..+++.|.  ++|||+||.|++++..     +    ..       
T Consensus       221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n  300 (893)
T 2ww8_A          221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLN  300 (893)
T ss_dssp             TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEEC
T ss_pred             cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccccccccccccccc
Confidence            45789999999999999986      47889999999998774  5899999999986532     0    00       


Q ss_pred             ---------------------CcccCCHHHHHHHHHHHhc----------CCCCCCCchHHHHHHHHHhhhc-C-CCCcc
Q 007718          378 ---------------------SMKLASQGTIINATQWLSS----------LVAGGGTNILLPLKQAIKLLSD-T-SESIP  424 (591)
Q Consensus       378 ---------------------~~~~~~~~~~~~a~~~i~~----------l~~~GgT~l~~aL~~a~~~l~~-~-~~~~~  424 (591)
                                           .....+.+++..+.+.|.+          +.+.|||++..||..|++++.. . +...+
T Consensus       301 ~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~k  380 (893)
T 2ww8_A          301 DSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQK  380 (893)
T ss_dssp             CCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEE
T ss_pred             cccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCe
Confidence                                 0001245566666677764          4457999999999999999963 2 36678


Q ss_pred             EEEEEecCCCC
Q 007718          425 LIFLITDGTVG  435 (591)
Q Consensus       425 ~IillTDG~~~  435 (591)
                      .|||||||.++
T Consensus       381 vIILLTDG~pt  391 (893)
T 2ww8_A          381 VIFHITDGVPT  391 (893)
T ss_dssp             EEEEEESSCCS
T ss_pred             EEEEEcCCCCC
Confidence            99999999986

>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A

Probab=99.29  E-value=9.4e-12  Score=136.85  Aligned_cols=134  Identities=18%  Similarity=0.220  Sum_probs=91.3

Q ss_pred             ccCceEEEEEeCCcCCCc----chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718          323 VFRKDVVFLVDVSGSMQG----VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV  398 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g----~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~  398 (591)
                      ..+.+++|+||+||||.+    .++...+.|+...+..+.++|+++|+.|++..... +.  . ...++..+++.+..+ 
T Consensus       366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~~~-~~--t-~~~~l~~~l~~l~~~-  440 (538)
T 1yvr_A          366 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPC-PI--T-VNMLLHEVVEKMSDI-  440 (538)
T ss_dssp             CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEECC-SC--C-TTSCHHHHHHHHTTC-
T ss_pred             CCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCceEc-CC--C-CcccHHHHHHHHhcC-
Confidence            457899999999999985    24555333344444555678999999999854332 11  1 122377888888765 


Q ss_pred             CCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCCC
Q 007718          399 AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLY  466 (591)
Q Consensus       399 ~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-~i~~~v~~~~~~~~~~~~ri~t~GiG~~  466 (591)
                      ++|||++..+|..|.+.    ....+.|||+|||..+... ...+.+++..... +..+++|+||+|+.
T Consensus       441 ~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~-~~~v~l~~igig~~  504 (538)
T 1yvr_A          441 TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVEDVHPATALKQYREKM-GIPAKLIVCAMTSN  504 (538)
T ss_dssp             CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHH-TCCCEEEEEECSSS
T ss_pred             CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEEecCC
Confidence            67999999999999876    2345799999999986532 2333333322221 23588899999974

>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*

Probab=99.20  E-value=9.1e-11  Score=129.63  Aligned_cols=154  Identities=15%  Similarity=0.138  Sum_probs=109.5

Q ss_pred             ceEEEEEeCCcCCCc------chHHHHHHHHHHHHHh---cCCCCeEEEEEeCCceEe--------------eecCcccC
Q 007718          326 KDVVFLVDVSGSMQG------VLLEQTKNALSASLSK---LNPQDSFNIIAFNGETHL--------------FSSSMKLA  382 (591)
Q Consensus       326 ~~ivfviD~SgSM~g------~~i~~ak~al~~~l~~---L~~~d~f~Ii~F~~~~~~--------------~~~~~~~~  382 (591)
                      ..++|+||+|+||..      ++++.+++++..++++   .+++|+++|+.|+++...              +.+ +...
T Consensus         8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~-l~~~   86 (565)
T 1jey_B            8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRH-LMLP   86 (565)
T ss_dssp             EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEE-EECC
T ss_pred             eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeec-CCCC
Confidence            579999999999964      5899999999999984   688999999999987521              111 1123


Q ss_pred             CHHHHHHHHHHHhc-CCCC-CCCchHHHHHHHHHhhhcC--CC--CccEEEEEecCCCCCh-hhHHHHHHHHHhcCCCCC
Q 007718          383 SQGTIINATQWLSS-LVAG-GGTNILLPLKQAIKLLSDT--SE--SIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSIS  455 (591)
Q Consensus       383 ~~~~~~~a~~~i~~-l~~~-GgT~l~~aL~~a~~~l~~~--~~--~~~~IillTDG~~~~~-~~i~~~v~~~~~~~~~~~  455 (591)
                      +.+.+    +.|+. +..+ ++|++..||..|..++...  ..  ..+.|||+|||..+.. ......++.. .+   .+
T Consensus        87 ~~~~l----~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l-~~---~g  158 (565)
T 1jey_B           87 DFDLL----EDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSL-KK---CD  158 (565)
T ss_dssp             CHHHH----HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHH-HH---TT
T ss_pred             CHHHH----HHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHH-Hh---cC
Confidence            33333    33554 6666 7999999999999998764  21  3579999999987532 2333333333 22   35


Q ss_pred             CeEE-EEEcCCC--------------------------------CCHHHHHHHHHhCCC-----EEEEcCC
Q 007718          456 PRIC-TFGVGLY--------------------------------CNHYFLQILAQIGRG-----YYDSAYD  488 (591)
Q Consensus       456 ~ri~-t~GiG~~--------------------------------~~~~lL~~LA~~~~G-----~~~~v~~  488 (591)
                      ++|+ ++|+|.+                                .|..+|+.||+.++|     .++.+.+
T Consensus       159 I~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~  229 (565)
T 1jey_B          159 ISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSE  229 (565)
T ss_dssp             EEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHH
T ss_pred             cEEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHH
Confidence            8999 8888743                                124569999999999     7877654

>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}

Probab=99.06  E-value=3.6e-10  Score=123.79  Aligned_cols=151  Identities=19%  Similarity=0.192  Sum_probs=96.5

Q ss_pred             ccCceEEEEEeCCcCCCc-c-----hHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhc
Q 007718          323 VFRKDVVFLVDVSGSMQG-V-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS  396 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g-~-----~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~  396 (591)
                      ..+.++++++|+||||.+ .     ++..+..|+...+-.+..+|+++|+.|++..... +.   ...+.+.++++.+..
T Consensus       360 ~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~~~-~~---~~~~~l~~~l~~l~~  435 (535)
T 2nvo_A          360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRPL-GI---TPRDTLESAMQKAQS  435 (535)
T ss_dssp             CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEEEC-CC---CTTCCHHHHHHHTCC
T ss_pred             CCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcceEc-CC---CcchhHHHHHHHHhh
Confidence            356899999999999986 2     2333333333334445668899999999965432 11   112455566666654


Q ss_pred             CCCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCCC---------
Q 007718          397 LVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLY---------  466 (591)
Q Consensus       397 l~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-~i~~~v~~~~~~~~~~~~ri~t~GiG~~---------  466 (591)
                      . ..|||++..+|+.+.+.    ......||++|||+.+... ...+.++..... ...+++++++|+|..         
T Consensus       436 ~-~~ggTdi~~~l~~a~~~----~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~-~~~~~klv~i~l~~~~~~~~~~~~  509 (535)
T 2nvo_A          436 V-SFGGTDCAQPILWAAQE----RLDVDTFVVYTDNETWAGQVHPTVALDQYAQK-MGRAPKLIVVGLTATEFSIADPQR  509 (535)
T ss_dssp             S-SBCCCCTTHHHHHHHHT----TCCCSEEEEEESSCCCCCSSCHHHHHHHHHHH-HSCCCEEEEEETTCSCCCCSCTTC
T ss_pred             C-CCCCccHHHHHHHHHHh----cCCCCEEEEEeCCCccCCCCCHHHHHHHHHHh-hCCCCeEEEEeccCCCcccCCCCC
Confidence            3 26999999999887654    2345789999999876432 233333333222 123599999999864         


Q ss_pred             --------CCHHHHHHHHHhCCCEE
Q 007718          467 --------CNHYFLQILAQIGRGYY  483 (591)
Q Consensus       467 --------~~~~lL~~LA~~~~G~~  483 (591)
                              .|...|+.||+.++|.|
T Consensus       510 ~~~~~i~g~se~~l~~Ia~~~~G~~  534 (535)
T 2nvo_A          510 RDMLDVVGFDAAAPNVMTAFARGEV  534 (535)
T ss_dssp             SSEEEEEECCTTHHHHHHHHHTTCC
T ss_pred             CCceeeeCCCHHHHHHHHHHhCCCc
Confidence                    23345666666666654

>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}

Probab=98.96  E-value=4.6e-10  Score=108.26  Aligned_cols=92  Identities=24%  Similarity=0.258  Sum_probs=70.5

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG  400 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~  400 (591)
                      .+.+++||||+||||.+ +++.+|+++..++.++.   ..++|+||+|+++.........+.+...  .+...+..+.++
T Consensus       133 ~~~~vvfLVDtSgSM~~-kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~--~~~~~l~~L~ag  209 (242)
T 3rag_A          133 VALHLVVCLDTSASMRD-KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV--NVAALEAELVAR  209 (242)
T ss_dssp             SCEEEEEEEECSGGGTT-THHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC--CHHHHHHHCCCC
T ss_pred             CCCCEEEEEECcccHHH-HHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH--HHHHHHhhCCCC
Confidence            67899999999999984 99999999999998875   4789999999997521110010112211  345567788999


Q ss_pred             CCCchHHHHHHHHHhhhc
Q 007718          401 GGTNILLPLKQAIKLLSD  418 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~  418 (591)
                      |+|.++.||..|++++.+
T Consensus       210 G~Tplg~AL~~A~~~~~~  227 (242)
T 3rag_A          210 GGTPTGPAIDHAADLLLS  227 (242)
T ss_dssp             SCCCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHH
Confidence            999999999999998853

>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B

Probab=98.83  E-value=2.6e-08  Score=110.78  Aligned_cols=136  Identities=15%  Similarity=0.164  Sum_probs=93.3

Q ss_pred             eEEEEEeCCcCCCc-------chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceE----------eeecCcccCCHHH
Q 007718          327 DVVFLVDVSGSMQG-------VLLEQTKNALSASLSKL---NPQDSFNIIAFNGETH----------LFSSSMKLASQGT  386 (591)
Q Consensus       327 ~ivfviD~SgSM~g-------~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~----------~~~~~~~~~~~~~  386 (591)
                      .++|+||+|+||..       ++++.+++++..++++.   +++|+++||.|+++..          .+.+ +...+.+.
T Consensus        37 ~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~-L~~~~~~~  115 (609)
T 1jey_A           37 SLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQE-LDNPGAKR  115 (609)
T ss_dssp             EEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEE-EECCCHHH
T ss_pred             EEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEec-CCCCCHHH
Confidence            49999999999964       37999999999999863   6789999999999872          2222 22344444


Q ss_pred             HHHHHHHHh--------c-CCCCCCCchHHHHHHHHHhhhcCCC--CccEEEEEecCCCCChhh-----HHHHHHHHHhc
Q 007718          387 IINATQWLS--------S-LVAGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDERG-----ICNEIKSYLTN  450 (591)
Q Consensus       387 ~~~a~~~i~--------~-l~~~GgT~l~~aL~~a~~~l~~~~~--~~~~IillTDG~~~~~~~-----i~~~v~~~~~~  450 (591)
                      +....+.++        . +....+|++..||..|.+++.....  ..+.|||||||.......     ....+.+.+. 
T Consensus       116 ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l~-  194 (609)
T 1jey_A          116 ILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLR-  194 (609)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHHHH-
Confidence            443332221        0 1224689999999999999976422  368999999998753321     1222222222 


Q ss_pred             CCCCCCeEEEEEcCCC
Q 007718          451 TRSISPRICTFGVGLY  466 (591)
Q Consensus       451 ~~~~~~ri~t~GiG~~  466 (591)
                        ..+++|++||+|..
T Consensus       195 --~~gI~i~~igig~~  208 (609)
T 1jey_A          195 --DTGIFLDLMHLKKP  208 (609)
T ss_dssp             --HHTEEEEEEEBCCT
T ss_pred             --hcCcEEEEEecCCC
Confidence              23599999999965

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A

Probab=98.21  E-value=8.9e-05  Score=84.27  Aligned_cols=164  Identities=16%  Similarity=0.115  Sum_probs=106.2

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeee--cCc---------------------
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFS--SSM---------------------  379 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~--~~~---------------------  379 (591)
                      ..|--++||||+|.+.  ..++.++++++..|+.|+++.+|+||+|++.++.+.  ...                     
T Consensus       130 p~pp~~vFvIDvS~~a--~~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~m  207 (769)
T 2nut_A          130 QMPLIFLYVVDTCMED--EDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEM  207 (769)
T ss_dssp             CCCCEEEEEEECCSCH--HHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHH
T ss_pred             CCCCEEEEEEECCccH--HHHHHHHHHHHHHHHhCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHH
Confidence            3566799999999984  578999999999999999999999999999876532  100                     


Q ss_pred             ccCC--------------------------HHHHHHHHHHHhcCCC---------CCCCchHHHHHHHHHhhhcC-CCCc
Q 007718          380 KLAS--------------------------QGTIINATQWLSSLVA---------GGGTNILLPLKQAIKLLSDT-SESI  423 (591)
Q Consensus       380 ~~~~--------------------------~~~~~~a~~~i~~l~~---------~GgT~l~~aL~~a~~~l~~~-~~~~  423 (591)
                      ...+                          .+......+.|+++..         .+.+.++.||+.|..++... ++.-
T Consensus       208 l~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~G  287 (769)
T 2nut_A          208 LGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTG  287 (769)
T ss_dssp             HC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred             hCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCC
Confidence            1011                          0111112233444433         46789999999999999732 1122


Q ss_pred             cEEEEEecCCCCCh---------h-----------h----------HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718          424 PLIFLITDGTVGDE---------R-----------G----------ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ  473 (591)
Q Consensus       424 ~~IillTDG~~~~~---------~-----------~----------i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~  473 (591)
                      -.|++++.|.++.+         .           +          ..+.+...+.+ .++.+.+|+++. ..++-..|.
T Consensus       288 GrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~-~gi~VDlF~~~~-~~vdla~l~  365 (769)
T 2nut_A          288 ARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAAT-TGHVIDIYACAL-DQTGLLEMK  365 (769)
T ss_dssp             CEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHH-HTCEEEEEEECS-SCCCHHHHT
T ss_pred             cEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHH-CCeEEEEEeccC-CccChHHHH
Confidence            36778888876410         0           0          01112222221 134455666553 457889999


Q ss_pred             HHHHhCCCEEEEcCCCC
Q 007718          474 ILAQIGRGYYDSAYDPG  490 (591)
Q Consensus       474 ~LA~~~~G~~~~v~~~~  490 (591)
                      .|++.|||..++..+..
T Consensus       366 ~l~~~TGG~~~~~~~F~  382 (769)
T 2nut_A          366 CCPNLTGGYMVMGDSFN  382 (769)
T ss_dssp             HHHHHSSCCEEEESCSS
T ss_pred             HHhhcCCceEEEcCCCc
Confidence            99999999998877654

>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}

Probab=98.19  E-value=5e-06  Score=80.18  Aligned_cols=78  Identities=13%  Similarity=0.077  Sum_probs=56.7

Q ss_pred             CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC-----CCHHHHHHHHHhCCCEEEEcCCCCchHHH
Q 007718          421 ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY-----CNHYFLQILAQIGRGYYDSAYDPGSVDYR  495 (591)
Q Consensus       421 ~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~-----~~~~lL~~LA~~~~G~~~~v~~~~~l~~~  495 (591)
                      +..+.|||+|||+.+.+...++..+.. .+   .+++||+||+|+.     .+...|+.||..|||.|+.++. +++.+.
T Consensus         8 ~~~k~iillTDG~~~~g~~p~~aa~~a-~~---~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~-~~l~~~   82 (242)
T 3rag_A            8 ATIRQILVITDGCSNIGPDPVEAARRA-HR---HGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP-ADISAT   82 (242)
T ss_dssp             CCEEEEEEEESSCCCSSSCHHHHHHHH-HH---TTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG-GGHHHH
T ss_pred             CCccEEEEEccCCCCCCCCHHHHHHHH-HH---CCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH-HHHHHH
Confidence            567899999999987555555444433 22   3599999999753     2357899999999999999855 777766


Q ss_pred             HHHHHHHh
Q 007718          496 IRRFFTAA  503 (591)
Q Consensus       496 ~~~~~~~~  503 (591)
                      ++.+..+.
T Consensus        83 ~~~~t~~~   90 (242)
T 3rag_A           83 AQMMTHQT   90 (242)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A

Probab=98.18  E-value=4.5e-05  Score=87.16  Aligned_cols=222  Identities=14%  Similarity=0.105  Sum_probs=136.4

Q ss_pred             CccCceEEEEEeCCcCCCc-chHHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeee--cCcc---------------
Q 007718          322 KVFRKDVVFLVDVSGSMQG-VLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFS--SSMK---------------  380 (591)
Q Consensus       322 ~~~~~~ivfviD~SgSM~g-~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~--~~~~---------------  380 (591)
                      ...|--++||||+|.++-. .-++.+++++...|+.|++   +.+|+||+|++..+.+.  ....               
T Consensus       184 ~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~  263 (810)
T 1pcx_A          184 QPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIA  263 (810)
T ss_dssp             CCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCC
T ss_pred             CCCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhcccc
Confidence            3456789999999988632 2478899999999999986   68999999999976541  1000               


Q ss_pred             -----------------cCCHHHHHHHHHHHhcCC---CCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh--
Q 007718          381 -----------------LASQGTIINATQWLSSLV---AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER--  438 (591)
Q Consensus       381 -----------------~~~~~~~~~a~~~i~~l~---~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~--  438 (591)
                                       .-....+..+++.|..+-   ..+.+.++.||+.|..++... +  -.|+++++|.++.+.  
T Consensus       264 dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~-G--GrI~~F~sg~pt~GpG~  340 (810)
T 1pcx_A          264 DLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV-G--GKIIVVSGTLPNLGIGK  340 (810)
T ss_dssp             CTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT-C--EEEEEEESSCCCSSTTC
T ss_pred             ccccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhc-C--CEEEEEecCCCCCCCCc
Confidence                             011345566666666432   247889999999999998753 2  368889998765210  


Q ss_pred             ------------------------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCch--
Q 007718          439 ------------------------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSV--  492 (591)
Q Consensus       439 ------------------------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l--  492 (591)
                                              ...+.+...+.+ .++.+.+|+++ ++.++-..|..+++.|||..++..+...-  
T Consensus       341 l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~-~gi~VDlF~~s-~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~  418 (810)
T 1pcx_A          341 LQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSK-VQITVDLFLAS-EDYMDVASLSNLSRFTAGQTHFYPGFSGKNP  418 (810)
T ss_dssp             CCC--------------------CCHHHHHHHHHHH-TTEEEEEEEEE-SSCCCHHHHHHHHHTTTCCEEEEETCCTTSH
T ss_pred             ccccccccccCcccchhhhcccchHHHHHHHHHHHH-CCeEEEEEEcc-CCccChHHHHHHHhcCCcEEEEcCCCcchhh
Confidence                                    001122221111 23556777766 45678999999999999998877655321  


Q ss_pred             HH--HHHH-HHHHhccceEEeE--EEEecCCCcceeeeCC---------CCCCcCCCCeEEEEEEEeCCC
Q 007718          493 DY--RIRR-FFTAASSVFLTNM--TLETSKHLNSLELFPS---------HIPDFCLECPLIVSGRYSGNF  548 (591)
Q Consensus       493 ~~--~~~~-~~~~~~~p~~~~v--~l~~~~~~~~~~v~P~---------~i~~l~~g~~l~v~g~~~~~~  548 (591)
                      .+  ++.+ +...+..+..-+.  ++....++.....+..         .++.+-.++.+.+.-.+.++.
T Consensus       419 ~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~~l  488 (810)
T 1pcx_A          419 NDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESI  488 (810)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEEEEEEECTTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCC
T ss_pred             HHHHHHHHHHHHHhhhhcceeEEEEEEcCCCeEEEEeecCccccCcCceEeecCCCCCEEEEEEEeccCC
Confidence            11  2322 2222223333333  3333333322222211         245667777888887777654

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*

Probab=98.05  E-value=0.00082  Score=76.42  Aligned_cols=164  Identities=17%  Similarity=0.097  Sum_probs=106.7

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCc------------ccCCH------
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSM------------KLASQ------  384 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~------------~~~~~------  384 (591)
                      ..|--++||||+|.+.  ..++.+++++...|+.|+++.+|+||+|++..+.+.-..            ..++.      
T Consensus       119 ~~pp~~vFvIDvs~~~--~~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~  196 (768)
T 1m2o_A          119 TVPPIFFFVVDLTSET--ENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEM  196 (768)
T ss_dssp             CSCCEEEEEEECCSCH--HHHHHHHHHHHHHHHTSCTTCEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHH
T ss_pred             CCCCEEEEEEECCcCH--HHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHH
Confidence            3567799999999886  468999999999999999999999999999876532110            00000      


Q ss_pred             ------------------------------------HHHHHHHHHHhcCCC---------CCCCchHHHHHHHHHhhhcC
Q 007718          385 ------------------------------------GTIINATQWLSSLVA---------GGGTNILLPLKQAIKLLSDT  419 (591)
Q Consensus       385 ------------------------------------~~~~~a~~~i~~l~~---------~GgT~l~~aL~~a~~~l~~~  419 (591)
                                                          +......+.|+++..         .+.+.++.||+.|..++...
T Consensus       197 l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~  276 (768)
T 1m2o_A          197 LTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGC  276 (768)
T ss_dssp             HHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHH
T ss_pred             HhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhc
Confidence                                                011112233444433         35568999999999998732


Q ss_pred             -CCCccEEEEEecCCCCCh---------h-------h--------------HHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007718          420 -SESIPLIFLITDGTVGDE---------R-------G--------------ICNEIKSYLTNTRSISPRICTFGVGLYCN  468 (591)
Q Consensus       420 -~~~~~~IillTDG~~~~~---------~-------~--------------i~~~v~~~~~~~~~~~~ri~t~GiG~~~~  468 (591)
                       ++..-.|++++.|-++.+         .       +              ..+.+...+.+ .++.+.+|+++ .+.++
T Consensus       277 ~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~-~gi~VDlF~~~-~~~~d  354 (768)
T 1m2o_A          277 YKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAA-NGHTVDIFAGC-YDQIG  354 (768)
T ss_dssp             CTTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHH-HTCEEEEEEEC-SSCCS
T ss_pred             cCCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHH-CCeEEEEEEcc-CCccC
Confidence             122246888888876410         0       0              01111111111 23556677765 45678


Q ss_pred             HHHHHHHHHhCCCEEEEcCCCC
Q 007718          469 HYFLQILAQIGRGYYDSAYDPG  490 (591)
Q Consensus       469 ~~lL~~LA~~~~G~~~~v~~~~  490 (591)
                      -..|..+++.|||..++..+..
T Consensus       355 la~l~~l~~~TGG~v~~y~~f~  376 (768)
T 1m2o_A          355 MSEMKQLTDSTGGVLLLTDAFS  376 (768)
T ss_dssp             HHHHHHHHHHHTCCEEEESCTT
T ss_pred             hHHHhhHhhcCCceEEEcCCCc
Confidence            8999999999999988876654

>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}

Probab=98.01  E-value=2.1e-05  Score=74.67  Aligned_cols=107  Identities=19%  Similarity=0.139  Sum_probs=72.3

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG  400 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~  400 (591)
                      .|.|++||+|.|+||.. .++.+|+.+..+.+.|   ..+-||++.+|.+....  . ..+. .++..+..+.|+++...
T Consensus         2 ~pvDl~fl~D~S~SM~~-di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~--~-~l~l-T~d~~~F~~~v~~~~vs   76 (212)
T 2iue_A            2 NSVDLYFLMGLSGSAQG-HLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQ--H-ILKL-TADSSQFQRELRKQLVS   76 (212)
T ss_dssp             CCEEEEEEEECCGGGTT-THHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEE--E-EEEE-ESCHHHHHHHHHTCCCC
T ss_pred             CceEEEEEEeCCCcchh-HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcce--e-cCCc-CCCHHHHHHHHhhcccc
Confidence            37899999999999975 6899999888776655   55789999999887321  1 1111 23455666777888777


Q ss_pred             CCCc----hHHHHHHHHH---hhhcCCCCccEEEEEecCCCCC
Q 007718          401 GGTN----ILLPLKQAIK---LLSDTSESIPLIFLITDGTVGD  436 (591)
Q Consensus       401 GgT~----l~~aL~~a~~---~l~~~~~~~~~IillTDG~~~~  436 (591)
                      ||-+    -..||..|+.   .+.=++ ..|.+||+||+.+..
T Consensus        77 g~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~  118 (212)
T 2iue_A           77 GKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHL  118 (212)
T ss_dssp             CCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCC
T ss_pred             CCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccc
Confidence            6432    2345555542   111123 678999999998753

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1

Probab=98.00  E-value=0.00034  Score=80.63  Aligned_cols=174  Identities=17%  Similarity=0.149  Sum_probs=114.3

Q ss_pred             EEecCCCCCCCccCceEEEEEeCCcCCCc-chHHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeee--cC-------
Q 007718          312 YLFPGKSQSRKVFRKDVVFLVDVSGSMQG-VLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFS--SS-------  378 (591)
Q Consensus       312 ~~~P~~~~~~~~~~~~ivfviD~SgSM~g-~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~--~~-------  378 (591)
                      ++.|.........|--++||||+|.+.-. .-++.+++++...|+.|++   +.+|+||+|++..+.+.  ..       
T Consensus       290 yi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~  369 (926)
T 1m2v_B          290 YMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEES  369 (926)
T ss_dssp             EECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC-------
T ss_pred             EEcChhhccCCCCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCccc
Confidence            34444322233456789999999987632 2478899999999999986   57999999999876541  10       


Q ss_pred             -----------------------cc--cCCHHHHHHHHHHHhcCC---CCCCCchHHHHHHHHHhhhcCCCCccEEEEEe
Q 007718          379 -----------------------MK--LASQGTIINATQWLSSLV---AGGGTNILLPLKQAIKLLSDTSESIPLIFLIT  430 (591)
Q Consensus       379 -----------------------~~--~~~~~~~~~a~~~i~~l~---~~GgT~l~~aL~~a~~~l~~~~~~~~~IillT  430 (591)
                                             ++  .-..+.+..+++.|..+-   ....+.++.||+.|..++... +  -.|++++
T Consensus       370 ~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~-G--GrI~~F~  446 (926)
T 1m2v_B          370 ADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV-G--GKIIVVS  446 (926)
T ss_dssp             --CCEEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT-C--EEEEEEE
T ss_pred             ccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhh-C--CEEEEEe
Confidence                                   00  012456666666666432   247788999999999998753 2  3678888


Q ss_pred             cCCCCCh-----------------h---------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEE
Q 007718          431 DGTVGDE-----------------R---------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYD  484 (591)
Q Consensus       431 DG~~~~~-----------------~---------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~  484 (591)
                      .|.++.+                 +         ...+.+...+.+ .++.+.+|+++ .+.++-..|..|++.|||..+
T Consensus       447 sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~-~gisVDlF~~s-~~~vdla~l~~l~~~TGG~v~  524 (926)
T 1m2v_B          447 GTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSK-VQITVDLFLAS-EDYMDVASLSNLSRFTAGQTH  524 (926)
T ss_dssp             SSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHH-HTEEEEEEEEE-SSCCCHHHHHHHHHTTTCCEE
T ss_pred             cCCCCCCCCcccccccccccCcccchhhhccchHHHHHHHHHHHHH-cCeEEEEEEcc-CCCcChHHHHHHHhcCCceEE
Confidence            8776410                 0         011222222211 13557778776 456799999999999999988


Q ss_pred             EcCCCC
Q 007718          485 SAYDPG  490 (591)
Q Consensus       485 ~v~~~~  490 (591)
                      +..+..
T Consensus       525 ~y~~F~  530 (926)
T 1m2v_B          525 FYPGFS  530 (926)
T ss_dssp             EEESCC
T ss_pred             EcCCCc
Confidence            776543

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=97.91  E-value=0.00018  Score=80.39  Aligned_cols=188  Identities=13%  Similarity=0.064  Sum_probs=113.1

Q ss_pred             ceEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHh---cCCCCeEEEEEeCCceEe-ee---c-C
Q 007718          307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK---LNPQDSFNIIAFNGETHL-FS---S-S  378 (591)
Q Consensus       307 ~~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~---L~~~d~f~Ii~F~~~~~~-~~---~-~  378 (591)
                      ..|.+.+.+..     ..|.|++||+|.|+||. ..|+.+|+....+++.   +..+-||++.+|.+.... +.   + .
T Consensus        98 ~~f~~~~~~~~-----~~pvDly~LmD~S~SM~-ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~  171 (690)
T 3fcs_B           98 KNFSIQVRQVE-----DYPVDIYYLMDLSYSMK-DDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPE  171 (690)
T ss_dssp             EEEEEEEECCB-----TCCEEEEEEEECSGGGH-HHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTT
T ss_pred             EEEEEEEeccC-----CCCccEEEEecCCcchH-HHHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhh
Confidence            35666666543     35799999999999997 4788888777666544   456789999999885421 00   0 0


Q ss_pred             ---------------------cccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHH---HhhhcCCCCccEEEEEe
Q 007718          379 ---------------------MKLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAI---KLLSDTSESIPLIFLIT  430 (591)
Q Consensus       379 ---------------------~~~~~~~~~~~a~~~i~~l~~~GgT~----l~~aL~~a~---~~l~~~~~~~~~IillT  430 (591)
                                           ..+. .++..+..+.|+.+...|+-+    -.+||..|+   +.+.=+++..|.|||+|
T Consensus       172 ~~~~pc~~~~~~c~~~f~f~~~l~l-t~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~T  250 (690)
T 3fcs_B          172 ALENPCYDMKTTCLPMFGYKHVLTL-TDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTT  250 (690)
T ss_dssp             TTTCTTSSSSSCCCCCCSEEEEEEE-ESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEE
T ss_pred             hccCCCcCCCCCCCCCccceeeccc-CCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEEC
Confidence                                 0011 245667777888877776633    245555554   22222345678999999


Q ss_pred             cCCCCC---h------------------------h----hHHHHHHHHHhcCCCCCC-eEEEEEcCCCCCHHHHHHHHHh
Q 007718          431 DGTVGD---E------------------------R----GICNEIKSYLTNTRSISP-RICTFGVGLYCNHYFLQILAQI  478 (591)
Q Consensus       431 DG~~~~---~------------------------~----~i~~~v~~~~~~~~~~~~-ri~t~GiG~~~~~~lL~~LA~~  478 (591)
                      |.....   .                        .    ..+..+.+.+.+.   ++ .||++-- .  ...+.+.|+..
T Consensus       251 Da~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~---~i~~ifavt~-~--~~~~y~~l~~~  324 (690)
T 3fcs_B          251 DAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQK---NINLIFAVTE-N--VVNLYQNYSEL  324 (690)
T ss_dssp             SSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHT---TCEEEEEEEG-G--GHHHHHHHHHH
T ss_pred             CCccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHc---CCeEEEEEeC-C--chhhHHHHHhh
Confidence            987541   0                        0    0134444444432   24 4666632 2  33455666655


Q ss_pred             CCCE-EEEc-CCCCchHHHHHHHHHHhccce
Q 007718          479 GRGY-YDSA-YDPGSVDYRIRRFFTAASSVF  507 (591)
Q Consensus       479 ~~G~-~~~v-~~~~~l~~~~~~~~~~~~~p~  507 (591)
                      -.|. ...+ .+...+.+.+...+.++.+.+
T Consensus       325 i~~s~v~~l~~dSsni~~li~~~y~~i~s~v  355 (690)
T 3fcs_B          325 IPGTTVGVLSMDSSNVLQLIVDAYGKIRSKV  355 (690)
T ss_dssp             STTCEEEEECTTCTTHHHHHHHHHHHHTTCE
T ss_pred             cCCceeeeeccccHHHHHHHHHHHHhhhcce
Confidence            5444 3333 445668888888888877544

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B

Probab=97.73  E-value=0.0031  Score=71.34  Aligned_cols=164  Identities=14%  Similarity=0.157  Sum_probs=108.3

Q ss_pred             CccCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhcCCCC--eEEEEEeCCceEeee--cC------------------
Q 007718          322 KVFRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLNPQD--SFNIIAFNGETHLFS--SS------------------  378 (591)
Q Consensus       322 ~~~~~~ivfviD~SgS-M~g~~i~~ak~al~~~l~~L~~~d--~f~Ii~F~~~~~~~~--~~------------------  378 (591)
                      .+.|--++||||+|-. +...-++.+++++...|+.|+++.  +|++|+|++..+.+.  +.                  
T Consensus       157 ~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P  236 (751)
T 3eh1_A          157 PPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLP  236 (751)
T ss_dssp             SCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSC
T ss_pred             CCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCCC
Confidence            3467789999999853 333468889999999999998755  899999999865321  00                  


Q ss_pred             -----cc--cCCHHHHHHHHHHHhcCCCC---CCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCCh-----------
Q 007718          379 -----MK--LASQGTIINATQWLSSLVAG---GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDE-----------  437 (591)
Q Consensus       379 -----~~--~~~~~~~~~a~~~i~~l~~~---GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~-----------  437 (591)
                           ++  .-....+..+++.|..+-..   ..+.++.||+.|..++... +  -.|++++.|-++.+           
T Consensus       237 ~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~-G--GrI~~F~sg~pt~GpG~l~~r~~~~  313 (751)
T 3eh1_A          237 TPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT-G--GRVSVFQTQLPSLGAGLLQSREDPN  313 (751)
T ss_dssp             CGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTT-C--EEEEEEECSCCCSSTTCCCCCCCSC
T ss_pred             ChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcC-C--CEEEEEecCCCCCCCCccccccccc
Confidence                 01  12245666777666644332   4577999999999998652 2  35677777765411           


Q ss_pred             --------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCC
Q 007718          438 --------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPG  490 (591)
Q Consensus       438 --------------~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~  490 (591)
                                    ....+.+.....+ .++.+.+|.++ .+.++-..|..+++.|||..++..+..
T Consensus       314 ~~~~~ke~~~~~~a~~fY~~la~~~~~-~~i~VDlF~~s-~~~~dlatl~~l~~~TGG~v~~y~~F~  378 (751)
T 3eh1_A          314 QRSSTKVVQHLGPATDFYKKLALDCSG-QQTAVDLFLLS-SQYSDLASLACMSKYSAGCIYYYPSFH  378 (751)
T ss_dssp             GGGGSSSCTTCSCSCSHHHHHHHHHHH-TTEEEEEEECC-SSCCCHHHHTHHHHTTTCCEEECTTCB
T ss_pred             cCCCchhhhhhcchHHHHHHHHHHHHh-cCceEEEEEcc-CcccChHhHHHHHhhcCceEEEeCCcc
Confidence                          0112333332222 23445666654 356788999999999999998876543

>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*

Probab=97.56  E-value=0.0015  Score=68.99  Aligned_cols=189  Identities=13%  Similarity=0.057  Sum_probs=113.8

Q ss_pred             ceEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEe-ee------
Q 007718          307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHL-FS------  376 (591)
Q Consensus       307 ~~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~-~~------  376 (591)
                      ..|.+.+.+..     ..|.|++||+|.|+||. ..++.+|+....+++.|.   .+-|+++.+|-+.... |.      
T Consensus        98 ~~f~v~~~~~~-----~ypvDLy~LmDlS~SM~-ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~  171 (472)
T 3t3p_B           98 KNFSIQVRQVE-----DYPVDIYYLMDLSYSMK-DDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPE  171 (472)
T ss_dssp             EEEEEEEECCS-----SCCEEEEEEEECSGGGH-HHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHH
T ss_pred             EEEEEEeecCC-----CCCceEEEEEccCcchH-HHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhh
Confidence            34666666543     36899999999999997 478888888877766554   5779999999886310 00      


Q ss_pred             ----cC---------------cccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHH---HhhhcCCCCccEEEEEe
Q 007718          377 ----SS---------------MKLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAI---KLLSDTSESIPLIFLIT  430 (591)
Q Consensus       377 ----~~---------------~~~~~~~~~~~a~~~i~~l~~~GgT~----l~~aL~~a~---~~l~~~~~~~~~IillT  430 (591)
                          |.               ..+. .++..+..+.|++....|+-+    -.+||..|+   +.+.=+.+..+.+||+|
T Consensus       172 ~l~nPc~~~~~~c~p~f~fr~~l~L-T~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~T  250 (472)
T 3t3p_B          172 ALENPCYDMKTTCLPMFGYKHVLTL-TDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTT  250 (472)
T ss_dssp             HHHCTTTTTTSCCCCCCSEEEEEEE-ESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEE
T ss_pred             hhcCCCcccccCCCCCcceeEeecc-CCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEEC
Confidence                00               0111 235666777788777776643    244554444   22221235678999999


Q ss_pred             cCCCCC--------------------hh-----------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007718          431 DGTVGD--------------------ER-----------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG  479 (591)
Q Consensus       431 DG~~~~--------------------~~-----------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~  479 (591)
                      |.-..-                    ..           ..+..+.+.+.+.+  -..||++--   ......+.|+..-
T Consensus       251 Da~~H~agDgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~n--I~~IFAVt~---~~~~~Y~~L~~~i  325 (472)
T 3t3p_B          251 DAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKN--INLIFAVTE---NVVNLYQNYSELI  325 (472)
T ss_dssp             SSCBCCTTGGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTT--CEEEEEECG---GGHHHHHHHHHTS
T ss_pred             CCCcCcCCCccccceecCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcC--ccEEEEEec---cchhHHHHHHHhC
Confidence            987430                    00           01344444444321  245777722   2344567777766


Q ss_pred             CCEEE-Ec-CCCCchHHHHHHHHHHhccce
Q 007718          480 RGYYD-SA-YDPGSVDYRIRRFFTAASSVF  507 (591)
Q Consensus       480 ~G~~~-~v-~~~~~l~~~~~~~~~~~~~p~  507 (591)
                      .|... .+ .+.+.+-+.+...+.++.+.+
T Consensus       326 p~s~vg~L~~dSsNiv~LI~~aY~~i~s~V  355 (472)
T 3t3p_B          326 PGTTVGVLSMDSSNVLQLIVDAYGKIRSKV  355 (472)
T ss_dssp             TTCEEEECCTTSTTHHHHHHHHHHHHTTCE
T ss_pred             CCceeeeccccchhHHHHHHHHHHHhheEE
Confidence            55443 33 445678888888888887654

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B

Probab=97.53  E-value=0.0088  Score=67.84  Aligned_cols=224  Identities=13%  Similarity=0.154  Sum_probs=133.1

Q ss_pred             CccCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhcCCC-------CeEEEEEeCCceEeee-----------------
Q 007718          322 KVFRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLNPQ-------DSFNIIAFNGETHLFS-----------------  376 (591)
Q Consensus       322 ~~~~~~ivfviD~SgS-M~g~~i~~ak~al~~~l~~L~~~-------d~f~Ii~F~~~~~~~~-----------------  376 (591)
                      .+.|--++||||+|-. ....-++.++++++..|+.|+++       .+|++|+|++..+.+.                 
T Consensus       174 ~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~  253 (770)
T 3efo_B          174 PPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVG  253 (770)
T ss_dssp             CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred             CCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccc
Confidence            3456789999999864 44447899999999999999875       6999999999865321                 


Q ss_pred             ----c----Cccc--CCHHHHHHHHHHHhcC---CCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCC-C-h----
Q 007718          377 ----S----SMKL--ASQGTIINATQWLSSL---VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG-D-E----  437 (591)
Q Consensus       377 ----~----~~~~--~~~~~~~~a~~~i~~l---~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~-~-~----  437 (591)
                          |    .+++  -....+..+++.|..+   ....+|.++.||+.|+..+...... -.|++++.|.++ . .    
T Consensus       254 d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~G-GkI~~F~s~lP~t~GpG~l~  332 (770)
T 3efo_B          254 EVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCP-GKLFIFHSSLPTAEAPGKLK  332 (770)
T ss_dssp             SCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCC-EEEEEEECSCCCSSSTTCCC
T ss_pred             cccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCCCC-cEEEEEecCCCCcCCCcccc
Confidence                0    0011  1235566666666533   2346788999999999888642222 256666666443 1 0    


Q ss_pred             --------------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCc--hHHH
Q 007718          438 --------------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGS--VDYR  495 (591)
Q Consensus       438 --------------------~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~--l~~~  495 (591)
                                          ....+.+.....+ .++.+.+|+++ ...++-..|..+++.|||..++..+...  -.++
T Consensus       333 ~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~-~~i~VDlF~~s-~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~~  410 (770)
T 3efo_B          333 NRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVA-HGCSVTLFLFP-SQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQ  410 (770)
T ss_dssp             CCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHH-TTEEEEEEECC-SSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHH
T ss_pred             ccccccccCCcchhhhhcchHHHHHHHHHHHHH-cCeEEEEEEec-CCccChHHHHHHHhhcCceEEEecCCcchhHHHH
Confidence                                0122333332222 23456676654 3567889999999999999988776542  2334


Q ss_pred             HHHHHHHh-ccceEEeE--EEEecCCCcceeeeCC---------CCCCcCCCCeEEEEEEEeCCC
Q 007718          496 IRRFFTAA-SSVFLTNM--TLETSKHLNSLELFPS---------HIPDFCLECPLIVSGRYSGNF  548 (591)
Q Consensus       496 ~~~~~~~~-~~p~~~~v--~l~~~~~~~~~~v~P~---------~i~~l~~g~~l~v~g~~~~~~  548 (591)
                      +.+.+.+. ..+..-+.  ++...+++.....+..         .++.+-..+.+.+.-++.++.
T Consensus       411 f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l  475 (770)
T 3efo_B          411 FLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKL  475 (770)
T ss_dssp             HHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSCC
T ss_pred             HHHHHHHhhhhceeeeEEEEEEecCCeEEEEeECCeeCCCCCceEecccCcCceEEEEEEecCCC
Confidence            44444433 23443333  3333344322222211         234455566777776666543

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}

Probab=97.47  E-value=0.011  Score=67.12  Aligned_cols=224  Identities=13%  Similarity=0.136  Sum_probs=132.6

Q ss_pred             CccCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhcCCC-------CeEEEEEeCCceEeee-----------------
Q 007718          322 KVFRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLNPQ-------DSFNIIAFNGETHLFS-----------------  376 (591)
Q Consensus       322 ~~~~~~ivfviD~SgS-M~g~~i~~ak~al~~~l~~L~~~-------d~f~Ii~F~~~~~~~~-----------------  376 (591)
                      .+.|--++||||+|-. ....-++.++++++..|+.|+++       .+|++|+|++..+.+.                 
T Consensus       170 ~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~  249 (766)
T 3eh2_A          170 FPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVA  249 (766)
T ss_dssp             CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred             CCCCCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChh
Confidence            3456789999999853 33346889999999999999864       6899999999865321                 


Q ss_pred             ----c----Cccc--CCHHHHHHHHHHHhcC---CCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCC--Ch----
Q 007718          377 ----S----SMKL--ASQGTIINATQWLSSL---VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG--DE----  437 (591)
Q Consensus       377 ----~----~~~~--~~~~~~~~a~~~i~~l---~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~--~~----  437 (591)
                          |    .+++  -....+..+++.|..+   ....+|.++.||+.|+..+...... -.|++++.|.++  +.    
T Consensus       250 d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~G-GkI~~F~s~lP~t~GpG~l~  328 (766)
T 3eh2_A          250 DMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECA-GKLFLFHTSLPIAEAPGKLK  328 (766)
T ss_dssp             TCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTCC-EEEEEEECSCCCSSSTTCCC
T ss_pred             hhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccCCCC-cEEEEEecCCCCcCCCcccc
Confidence                0    0111  1245666666666533   2346788999999999988643222 356666666443  10    


Q ss_pred             --------------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCch--HHH
Q 007718          438 --------------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSV--DYR  495 (591)
Q Consensus       438 --------------------~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l--~~~  495 (591)
                                          ....+.+...+.+ .++.+.+|+++ ...++-..|..+++.|||..++..+...-  .++
T Consensus       329 ~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~-~~i~VDlF~~s-~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~  406 (766)
T 3eh2_A          329 NRDDRKLINTDKEKTLFQPQTGAYQTLAKECVA-QGCCVDLFLFP-NQYVDVATLSVVPQLTGGSVYKYASFQVENDQER  406 (766)
T ss_dssp             CCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHH-HTEEEEEEECC-SSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHH
T ss_pred             cccccccCCCcchhhhccchHHHHHHHHHHHHh-CCeEEEEEEec-CCCcChHHHHHHHhhcCceEEEeCCCcchhHHHH
Confidence                                0112333322222 13456677654 35678899999999999999887765421  233


Q ss_pred             HHHHHHHh-ccceEEeE--EEEecCCCcceeeeCC---------CCCCcCCCCeEEEEEEEeCCC
Q 007718          496 IRRFFTAA-SSVFLTNM--TLETSKHLNSLELFPS---------HIPDFCLECPLIVSGRYSGNF  548 (591)
Q Consensus       496 ~~~~~~~~-~~p~~~~v--~l~~~~~~~~~~v~P~---------~i~~l~~g~~l~v~g~~~~~~  548 (591)
                      +.+.+.+. ..+..-+.  ++...+++.....+..         .++.+-.++.+.+.-++.++.
T Consensus       407 f~~dl~~~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l  471 (766)
T 3eh2_A          407 FLSDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRL  471 (766)
T ss_dssp             HHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEEESCBCSSSSCEEEEEEETTCCEEEEEEESSCC
T ss_pred             HHHHHHHHhhhcceeeEEEEEEecCCeEEEEeECCeecCCCCceeeccCCCCceEEEEEEecCCC
Confidence            44434333 23443343  3333344332222211         233444566666666666543

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=97.41  E-value=0.00064  Score=75.71  Aligned_cols=188  Identities=16%  Similarity=0.109  Sum_probs=106.8

Q ss_pred             ceEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHH---HhcCCCCeEEEEEeCCceEe-ee------
Q 007718          307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASL---SKLNPQDSFNIIAFNGETHL-FS------  376 (591)
Q Consensus       307 ~~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l---~~L~~~d~f~Ii~F~~~~~~-~~------  376 (591)
                      ..|.+.+.+..     ..|.|++||+|.|+||. ..|+.+|+....++   +.+..+-||++.+|.+.... +.      
T Consensus        91 ~~f~~~~~~~~-----~ypvDly~LmD~S~SM~-ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~  164 (687)
T 3k6s_B           91 AAFNVTFRRAK-----GYPIDLYYLMDLSYSML-DDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDK  164 (687)
T ss_dssp             EEEEEEECCCC-----CCCCEEEEEEECSSTTH-HHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTT
T ss_pred             eEEEEEEeccC-----CCceeEEEEEcCCcchH-HHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchh
Confidence            35666666543     35799999999999997 47777777665554   45567889999999885311 00      


Q ss_pred             ---cC---------------cccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHH---HhhhcCCCCccEEEEEec
Q 007718          377 ---SS---------------MKLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAI---KLLSDTSESIPLIFLITD  431 (591)
Q Consensus       377 ---~~---------------~~~~~~~~~~~a~~~i~~l~~~GgT~----l~~aL~~a~---~~l~~~~~~~~~IillTD  431 (591)
                         |.               .... .++..+..+.|+.....|+-+    -.+||..|+   +.+.=+. ..|.|||+||
T Consensus       165 ~~~Pc~~~~~~c~~~f~f~~~l~l-t~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rllV~~TD  242 (687)
T 3k6s_B          165 LRNPCPNKEKECQPPFAFRHVLKL-TNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLLVFATD  242 (687)
T ss_dssp             TTCCCCSCCCCCCCCCSCEEEEEE-ESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEEEEECS
T ss_pred             ccCCCCCCCCCcCCcccceeeccc-CCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEEEEECC
Confidence               00               0011 234566677788777776533    244444443   2222123 6789999999


Q ss_pred             CCCCC---h-----------------------hh----HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC-C
Q 007718          432 GTVGD---E-----------------------RG----ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG-R  480 (591)
Q Consensus       432 G~~~~---~-----------------------~~----i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~-~  480 (591)
                      .....   .                       ..    .+..+.+.+.+.+  -..||++- ..  .....+.|+..- +
T Consensus       243 a~~H~agDg~l~gi~~pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~--I~~ifavt-~~--~~~~y~~l~~~i~~  317 (687)
T 3k6s_B          243 DGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENN--IQPIFAVT-SR--MVKTYEKLTEIIPK  317 (687)
T ss_dssp             SCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTT--CBCCEEEC-GG--GHHHHHHHHHHSSS
T ss_pred             CccccCCCccccceecCCCCccccCCCccccccccCCCCHHHHHHHHHHcC--CeEEEEEe-cc--chhhHHHHHhhcCC
Confidence            87541   0                       00    0223333333221  13466662 22  334556666554 4


Q ss_pred             CEEEEcC-CCCchHHHHHHHHHHhccce
Q 007718          481 GYYDSAY-DPGSVDYRIRRFFTAASSVF  507 (591)
Q Consensus       481 G~~~~v~-~~~~l~~~~~~~~~~~~~p~  507 (591)
                      +....+. +...+.+.+...+.++.+.+
T Consensus       318 s~v~~L~~dSsni~~li~~ay~~i~s~v  345 (687)
T 3k6s_B          318 SAVGELSEDSSNVVQLIKNAYNKLSSRV  345 (687)
T ss_dssp             CCEEECCTTCCSCGGGTTTHHHHHSSCC
T ss_pred             ceeeeeccccHHHHHHHHHHHHhhhcee
Confidence            4443333 34457677777777776543

>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*

Probab=97.30  E-value=0.0086  Score=62.69  Aligned_cols=187  Identities=14%  Similarity=0.071  Sum_probs=112.1

Q ss_pred             eEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEe-ee-------
Q 007718          308 IFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHL-FS-------  376 (591)
Q Consensus       308 ~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~-~~-------  376 (591)
                      .|.+.+.+..     ..|.|++||+|.|+||.. .++..|+....+++.|.   .+-|+++.+|-+.... +.       
T Consensus       110 ~f~v~~~~~~-----~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~  183 (454)
T 3vi3_B          110 TFTLKFKRAE-----DYPIDLYYLMDLSYSMKD-DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKL  183 (454)
T ss_dssp             CEEEEEECCS-----CCCEEEEEEEECSGGGHH-HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTT
T ss_pred             EEEEEEecCC-----CCceeEEEEecCCcchhh-HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHh
Confidence            4666555543     368999999999999974 78888888777776654   5779999999875210 00       


Q ss_pred             --cC--------------cccCCHHHHHHHHHHHhcCCCCCCCch----HHHHHHHHH---hhhcCCCCccEEEEEecCC
Q 007718          377 --SS--------------MKLASQGTIINATQWLSSLVAGGGTNI----LLPLKQAIK---LLSDTSESIPLIFLITDGT  433 (591)
Q Consensus       377 --~~--------------~~~~~~~~~~~a~~~i~~l~~~GgT~l----~~aL~~a~~---~l~~~~~~~~~IillTDG~  433 (591)
                        |.              .... .++..+..++|++....|+-+.    .+||..|.-   .+.=+. ..+.+||+||..
T Consensus       184 ~nPC~~~~~c~~~f~fr~~l~L-T~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~-a~rllV~~TDa~  261 (454)
T 3vi3_B          184 RNPCTSEQNCTTPFSYKNVLSL-TNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVFSTDAG  261 (454)
T ss_dssp             TCCSCSSSCCCCCCSEEEEEEE-ESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESSC
T ss_pred             cCCCcCccCCCCCcceeeeeec-CCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCcc-ceEEEEEECCCC
Confidence              00              0111 1456677888888888766432    344443331   111123 667999999987


Q ss_pred             CCC---h---------------------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEE
Q 007718          434 VGD---E---------------------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY  483 (591)
Q Consensus       434 ~~~---~---------------------------~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~  483 (591)
                      ..-   .                           -..+..+.+.+.+.+  -..||++-=   ......+.|+..=.|..
T Consensus       262 fH~agDgkL~GIv~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~n--I~~IFAVt~---~~~~~Y~~L~~~ip~s~  336 (454)
T 3vi3_B          262 FHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENN--IQTIFAVTE---EFQPVYKELKNLIPKSA  336 (454)
T ss_dssp             BCCTTTTGGGTCCSCCCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTT--EEEEEEEEG---GGHHHHHHHHHHSTTEE
T ss_pred             cCcCCCccccceecCCCCccEeCCCcccccccCCCCCHHHHHHHHHhcC--CcEEEEEcC---ccchHHHHHHHhCCCce
Confidence            531   0                           001344444444321  134777732   13345677777765554


Q ss_pred             EE-c-CCCCchHHHHHHHHHHhccce
Q 007718          484 DS-A-YDPGSVDYRIRRFFTAASSVF  507 (591)
Q Consensus       484 ~~-v-~~~~~l~~~~~~~~~~~~~p~  507 (591)
                      .- + .+.+.+-+.+...+.++.+.+
T Consensus       337 vg~Ls~dSsNiv~LI~~aY~~i~S~V  362 (454)
T 3vi3_B          337 VGTLSANSSNVIQLIIDAYNSLSSEV  362 (454)
T ss_dssp             EEEECTTCTTHHHHHHHHHHHHHTCE
T ss_pred             eeEccccchhHHHHHHHHHHHhheEE
Confidence            33 2 445667778888888877554

>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*

Probab=96.82  E-value=0.0048  Score=65.31  Aligned_cols=188  Identities=17%  Similarity=0.134  Sum_probs=110.4

Q ss_pred             ceEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEe-ee------
Q 007718          307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHL-FS------  376 (591)
Q Consensus       307 ~~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~-~~------  376 (591)
                      ..|.+.+.+..     ..|.|++||+|.|+||. ..++.+|+....+++.|   ..+-|+++.+|-+.... +.      
T Consensus       119 ~~f~v~~~~~~-----~yPVDLyyLmDlS~SM~-ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~  192 (503)
T 3v4v_B          119 QQLQVRFLRAE-----GYPVDLYYLMDLSYSMK-DDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSK  192 (503)
T ss_dssp             EEEEEEEECCS-----SCCEEEEEEEECSGGGH-HHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHH
T ss_pred             EEEEEEEEccC-----CCceeEEEEEecCcchh-hHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHH
Confidence            35666666543     36899999999999997 47888888877776655   45779999999875210 00      


Q ss_pred             ---cC---------------cccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHH---HhhhcCCCCccEEEEEec
Q 007718          377 ---SS---------------MKLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAI---KLLSDTSESIPLIFLITD  431 (591)
Q Consensus       377 ---~~---------------~~~~~~~~~~~a~~~i~~l~~~GgT~----l~~aL~~a~---~~l~~~~~~~~~IillTD  431 (591)
                         |.               ..+. .++..+..+.|++....|+-+    -.+||..|+   +.+.= ....|.+||+||
T Consensus       193 l~~PC~~~~~~c~p~f~fr~~l~L-T~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgW-R~a~rllV~~TD  270 (503)
T 3v4v_B          193 LRHPCPTRLERCQSPFSFHHVLSL-TGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGW-RNVSRLLVFTSD  270 (503)
T ss_dssp             HHCCSSCSSSCCCCCCSEEEEEEE-ESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTC-CSSEEEEEEEES
T ss_pred             hcCCCcCCCCCCCCCcceEEEEEe-cCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCC-CcceEEEEEECC
Confidence               00               0111 135566777788777776643    234444443   12211 125679999999


Q ss_pred             CCCCC--------------------hh-----------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCC
Q 007718          432 GTVGD--------------------ER-----------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGR  480 (591)
Q Consensus       432 G~~~~--------------------~~-----------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~  480 (591)
                      ....-                    ..           ..+..+.+.+.+.+  -..||++-  . ......+.|+..=.
T Consensus       271 A~fH~agDgkLaGIv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~enn--I~~IFAVt--~-~~~~~Y~~L~~~ip  345 (503)
T 3v4v_B          271 DTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAAN--IQPIFAVT--S-AALPVYQELSKLIP  345 (503)
T ss_dssp             SCBCCTTGGGTTTCCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHT--EEEEEEEC--S-SSHHHHHHHHTTST
T ss_pred             CCcCcCCCccccceecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcC--CeEEEEEc--c-cchhHHHHHHHhCC
Confidence            87430                    00           01233333333221  13476662  2 23456677776655


Q ss_pred             CEE-EEc-CCCCchHHHHHHHHHHhccce
Q 007718          481 GYY-DSA-YDPGSVDYRIRRFFTAASSVF  507 (591)
Q Consensus       481 G~~-~~v-~~~~~l~~~~~~~~~~~~~p~  507 (591)
                      |.. -.+ .+.+.+-+.+...+.++.+.+
T Consensus       346 ~s~vg~Ls~dSsNiv~LI~~aY~~i~S~V  374 (503)
T 3v4v_B          346 KSAVGELSEDSSNVVQLIMDAYNSLSSTV  374 (503)
T ss_dssp             TCEEEECCTTSCTHHHHHHHHHHHHHTCE
T ss_pred             CceeeEccccchhHHHHHHHHHHHhheEE
Confidence            543 333 344667778888888877654

>4g2a_A Hypothetical protein; two domains protein, yarhg domain (PFAM13308), DUF4424 (PF14 structural genomics; HET: MSE; 2.33A {Legionella pneumophila subsp}

Probab=96.32  E-value=0.12  Score=51.38  Aligned_cols=111  Identities=12%  Similarity=0.169  Sum_probs=76.8

Q ss_pred             CCccccccceeEEEE-----EEEE-------eeeEEEEEEEEEEecccCCCceeeEEEEeecCCC---------------
Q 007718           78 PPALIPLHMHGVEME-----VDCC-------LDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGER---------------  130 (591)
Q Consensus        78 ~~~~~pL~~~~v~v~-----V~~~-------~~~a~v~~~q~f~n~~~~~~~~~e~~y~fPL~~~---------------  130 (591)
                      +..++||+...|.+.     |+..       -..+.|+|.-+|.|   ++.......+.||+|..               
T Consensus        10 g~~~iP~~~s~Ism~kE~i~ik~~~~~~~~~~~~~~V~v~f~F~N---p~~~~ktI~vgFP~p~~~~~~~~~~~~~~~~~   86 (322)
T 4g2a_A           10 GSLPIPVSQPHIKMVSELIRISGKNLNEPQMNGSWHYNCNFTFKN---TLNKEVTISMAFPFPINDGNSEIALPAGQQTN   86 (322)
T ss_dssp             EECCEESSCCSEEEEEEEEEEEEESTTCTTCCCEEEEEEEEEEEE---CSSSCEEEEEEEEECBCCSSSEECCCTTCCCC
T ss_pred             CCeeeeeccCceeEEEEEEEEEeccccccccccceEEEEEEEEeC---CCCCcEEEEEEecCCCccCCcccccccccCCC
Confidence            345778887666554     3211       12477999999999   67788889899998832               


Q ss_pred             ---eeEEEEEEEECCEEEEEEEEehHhhhhhhhhccccCCccceecCceEEEcCCCCCCCEEEEEEEEEEeeecc
Q 007718          131 ---GSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIYTLRIPQVDGGSTLSIKVNWSQKLTYE  202 (591)
Q Consensus       131 ---a~V~~f~~~i~gk~i~~~v~~k~~a~~~~~~~~~~~~~~ll~~~~F~~~v~~i~~g~~v~I~i~y~q~L~~~  202 (591)
                         ..+.+|...||||.+..++.....-.          +.+.--.+.|.... ..++|+++.|+-+|.-.+...
T Consensus        87 ~~~~~i~dFkt~VNGk~V~~~~~~~a~~~----------~k~v~~~~~Y~f~~-~F~~G~~~~V~HsY~~~~s~~  150 (322)
T 4g2a_A           87 VGQALVYDFLVTVNDKQVSAQRGNIAPDQ----------NKGLYYEDAYFWKT-TFPPLATVNIHHDYSTGATYD  150 (322)
T ss_dssp             TTCBSCEEEEEEETTEEECCEEEECCCBG----------GGTBCCSEEEEEEE-EECTTCEEEEEEEEEEECEEE
T ss_pred             CCCcceeeEEEEECCEEcccchhhcCccc----------cCCcccceeEEEee-ecCCCCeeEEEEEEEecCcCC
Confidence               23889999999999988875433211          11111234565555 689999999999998777655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	591
d1q0pa_	209	c.62.1.1 (A:) Complement factor B domain {Human (H	4e-11
d1shux_	181	c.62.1.1 (X:) Capillary morphogenesis protein 2 do	4e-10
d1jeya2	220	c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain	4e-09
d1yvra2	174	c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprot	4e-08
d1n3ya_	189	c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo	2e-07
d1mf7a_	194	c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, M	2e-07
d1atza_	184	c.62.1.1 (A:) von Willebrand factor A3 domain, vWA	2e-07
d1ijba_	202	c.62.1.1 (A:) von Willebrand factor A1 domain, vWA	4e-07
d1pt6a_	192	c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo s	5e-05
d1mjna_	179	c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte funct	2e-04
d1jeyb2	236	c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain	2e-04
d1tyeb2	248	c.62.1.1 (B:107-354) Integrin beta A domain {Human	0.004

>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 4e-11
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 26/180 (14%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQD---SFNIIAFNGETHLFSSSMKLAS 383
           ++  ++D S S+        K +L   + K+        + ++ +     ++   +  A 
Sbjct: 3   NIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIW-VKVSEAD 61

Query: 384 QGTIINATQWLSSLV-----AGGGTNILLPLKQAIKLLSDTSESIP--------LIFLIT 430
                  T+ L+ +         GTN    L+    ++S   +  P        +I L+T
Sbjct: 62  SSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMT 121

Query: 431 DGTV---GDERGICNEIKSYLT------NTRSISPRICTFGVGLYCNHYFLQILAQIGRG 481
           DG     GD   + +EI+  L       N R     +  FGVG   N   +  LA     
Sbjct: 122 DGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDN 181

>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 181

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Capillary morphogenesis protein 2 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 4e-10
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 7/159 (4%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGT 386
           D+ F++D SGS+    +E        +   ++P+   + I F+ +  +         +G 
Sbjct: 7   DLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATII--LPLTGDRGK 64

Query: 387 IINATQWLSSLVAGGGTNILLPLKQAIKL--LSDTSESIPLIFLITDGTVGDERGICNEI 444
           I    + L  +   G T I   LK A +    +   ++  +I  +TDG +     + +  
Sbjct: 65  ISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDG--LVPSYA 122

Query: 445 KSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483
           +     +RS+   +   GV  +     L+ +A      +
Sbjct: 123 EKEAKISRSLGASVYCVGVLDF-EQAQLERIADSKEQVF 160

>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 220

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku70 subunit N-terminal domain
domain: Ku70 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 4e-09
 Identities = 23/172 (13%), Positives = 50/172 (29%), Gaps = 32/172 (18%)

Query: 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL----------NPQDSFNIIAFNGE--- 371
           R  ++FLVD S +M     E        S+  +          + +D   ++ +  E   
Sbjct: 2   RDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDK 61

Query: 372 -----THLFSSSMKLASQGTIIN----------ATQWLSSLVAGGGTNILLPLKQAIKLL 416
                 +++            I             ++   +  G   ++   L     L 
Sbjct: 62  NSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLF 121

Query: 417 SDTSE--SIPLIFLITDG--TVGDERGICNEIKSYLTNTRSISPRICTFGVG 464
           SD     S   I L T+     G++    +  ++   + R     +    + 
Sbjct: 122 SDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLK 173

>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 174

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: RoRNP C-terminal domain-like
domain: 60-kda SS-A/Ro ribonucleoprotein, RoRNP
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 51.0 bits (121), Expect = 4e-08
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 326 KDVVFLVDVSGSMQ----GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKL 381
           K  +  +DVS SM     G +L  +  A +  +     +   +++AF+ E      ++ +
Sbjct: 6   KRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPCPITVNM 65

Query: 382 ASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDG-TVGDERGI 440
                +   +         G T+  LP+  A K  +          + TD  T  ++   
Sbjct: 66  LLHEVVEKMSDI-----TMGSTDCALPMLWAQKTNTAADI----FIVFTDCETNVEDVHP 116

Query: 441 CNEIKSYLTNTRSISPRICTFGVGLY 466
              +K Y      I  ++    +   
Sbjct: 117 ATALKQYREK-MGIPAKLIVCAMTSN 141

>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha-x beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 12/159 (7%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQG 385
           D+VFL+D SGS+         N + A +S+       F+++ F+ +     +  +     
Sbjct: 4   DIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSS 63

Query: 386 TIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTS-----ESIPLIFLITDGTVGDERGI 440
             ++    +  L     T     ++  +  L   S     ++  ++ +ITDG    +   
Sbjct: 64  NPLSLLASVHQLQGFTYTAT--AIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS-- 119

Query: 441 CNEIKSYLTNTRSISPRICTFGVGLYC-NHYFLQILAQI 478
             + K  +    +        GVGL   N    + L  I
Sbjct: 120 -LDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDI 157

>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 24/157 (15%), Positives = 58/157 (36%), Gaps = 8/157 (5%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDS-FNIIAFNGETHLFSSSMKLASQG 385
           D+ FL+D SGS+      + K  +S  + +L    + F+++ ++ E  +  +  +  +  
Sbjct: 7   DIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNP 66

Query: 386 TIINATQ--WLSSLVAGGGTNILLPLKQAIKLLSDTSES-IPLIFLITDGTVGDERGICN 442
              +  +            T I   +++   + +   ++   ++ +ITDG    +     
Sbjct: 67  NPRSLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYE 126

Query: 443 EIKSYLTNTRSISPRICTFGVG-LYCNHYFLQILAQI 478
           ++                 GVG  + +    Q L  I
Sbjct: 127 DVIPEA---DREGVIRYVIGVGDAFRSEKSRQELNTI 160

>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: von Willebrand factor A3 domain, vWA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 12/163 (7%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLAS 383
           DV+ L+D S S      ++ K+   A +SK N        +++ +   T +      +  
Sbjct: 4   DVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPE 63

Query: 384 QGTIINATQ--WLSSLVAGGGTNILLPLKQAI-KLLSDTSESIPLIFLITDGTVGDERGI 440
           +  +++           +  G  +   ++    ++      +   + ++      D    
Sbjct: 64  KAHLLSLVDVMQREGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVD---- 119

Query: 441 CNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483
              + +     RS    +   G+G   +   L+ILA       
Sbjct: 120 --SVDAAADAARSNRVTVFPIGIGDRYDAAQLRILAGPAGDSN 160

>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 202

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: von Willebrand factor A1 domain, vWA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 4e-07
 Identities = 16/161 (9%), Positives = 48/161 (29%), Gaps = 5/161 (3%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLAS 383
           D+VFL+D S  +     E  K  +   + +L          ++ ++  +H +        
Sbjct: 15  DLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKR 74

Query: 384 QGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSE-SIPLIFLITDGTVGDERGICN 442
              +      +         +    LK  +  +    +        +      + + +  
Sbjct: 75  PSELRRIASQVKYAG-SQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSR 133

Query: 443 EIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483
               Y+   +     +   G+G + N   ++++ +      
Sbjct: 134 NFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENK 174

>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha1-beta1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 5e-05
 Identities = 20/154 (12%), Positives = 44/154 (28%), Gaps = 13/154 (8%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNG----ETHLFSSSM 379
           D+V ++D S S+     +     L+  L +++    Q    I+ +      E +L   S 
Sbjct: 3   DIVIVLDGSNSIYP--WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSS 60

Query: 380 KLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERG 439
                       Q                 +   +          ++ ++TDG   D   
Sbjct: 61  TEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHR 120

Query: 440 ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473
           +   I+         + +  +  +    N   L 
Sbjct: 121 LKKVIQDC----EDENIQRFSIAILGSYNRGNLS 150

>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 179

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 16/121 (13%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDS-FNIIAFNG----ETHLFSSSMKL 381
           D+VFL D S S+Q    ++  + +   + K +     F  + F+     E        + 
Sbjct: 4   DLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRK 63

Query: 382 ASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESI-----PLIFLITDGTVGD 436
                + +             TN    +      +             ++ +ITDG   D
Sbjct: 64  DPDALLKHVKHM------LLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATD 117

Query: 437 E 437
            
Sbjct: 118 S 118

>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku80 subunit N-terminal domain
domain: Ku80 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 23/211 (10%), Positives = 51/211 (24%), Gaps = 30/211 (14%)

Query: 325 RKDVVFLVDVSGSMQGVL------LEQTKNALSASLSKL---NPQDSFNIIAFNGE---- 371
           +  VV  +DV  +M   +       EQ K  ++  + +      +D   ++ F  +    
Sbjct: 2   KAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDN 61

Query: 372 -----------THLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTS 420
                      T      +        I +     S  A     +++ +           
Sbjct: 62  PLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKK 121

Query: 421 ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGR 480
                I + TD +    +   + I   L         +  F      +          G 
Sbjct: 122 FEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDI---SLQFFLPF---SLGKEDGSGDRGD 175

Query: 481 GYYDSAYDPGSVDYRIRRFFTAASSVFLTNM 511
           G +       S   +            +  +
Sbjct: 176 GPFRLGGHGPSFPLKGITEQQKEGLEIVKMV 206

>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin beta A domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 327 DVVFLVDVSGSMQGVLLEQTKNA---LSASLSKLNPQDSFNIIAF 368
           D+ +L+D+S SM+   L   +N    L+  + KL         AF
Sbjct: 7   DIYYLMDLSYSMKDD-LWSIQNLGTKLATQMRKLTSNLRIGFGAF 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	591
d1q0pa_	209	Complement factor B domain {Human (Homo sapiens) [	99.78
d1shux_	181	Capillary morphogenesis protein 2 domain {Human (H	99.76
d1atza_	184	von Willebrand factor A3 domain, vWA3 {Human (Homo	99.72
d1ijba_	202	von Willebrand factor A1 domain, vWA1 {Human (Homo	99.71
d1n3ya_	189	Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI	99.7
d1mf7a_	194	Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub	99.66
d1v7pc_	193	Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId	99.66
d1pt6a_	192	Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId	99.62
d1mjna_	179	Integrin CD11a/CD18 (Leukocyte function associated	99.6
d1jeya2	220	Ku70 subunit N-terminal domain {Human (Homo sapien	99.44
d1yvra2	174	60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c	99.4
d1jeyb2	236	Ku80 subunit N-terminal domain {Human (Homo sapien	99.33
d1tyeb2	248	Integrin beta A domain {Human (Homo sapiens) [TaxI	98.99
d1pd0a3	252	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	98.26
d2qtva3	271	Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T	98.19

>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1e-18  Score=166.20  Aligned_cols=179  Identities=16%  Similarity=0.211  Sum_probs=119.6

Q ss_pred             ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCc--ccCCHHHHHHHHHHHhc--CC
Q 007718          326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSM--KLASQGTIINATQWLSS--LV  398 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~--~~~~~~~~~~a~~~i~~--l~  398 (591)
                      -|++||||.||||.+.+++.+|+++..+++.|.   .++||+|+.|++++..+.+..  ...+...+..+++.+..  ..
T Consensus         2 lDivfvlD~SgSm~~~~~~~~k~~~~~li~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~l~~~i~~i~~~~~~   81 (209)
T d1q0pa_           2 MNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHK   81 (209)
T ss_dssp             EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTTSCS
T ss_pred             cCEEEEEeCCCCCChHHHHHHHHHHHHHHHhcccCCCCcEEEEEEecCceeEEecCccchhhHHHHHHHHHHHhhhcccc
Confidence            489999999999999999999999999998874   578999999999988765532  12333444444333321  13


Q ss_pred             CCCCCchHHHHHHHHHhhhcCC--------CCccEEEEEecCCCCChh---hHHHHHHHHHh------cCCCCCCeEEEE
Q 007718          399 AGGGTNILLPLKQAIKLLSDTS--------ESIPLIFLITDGTVGDER---GICNEIKSYLT------NTRSISPRICTF  461 (591)
Q Consensus       399 ~~GgT~l~~aL~~a~~~l~~~~--------~~~~~IillTDG~~~~~~---~i~~~v~~~~~------~~~~~~~ri~t~  461 (591)
                      .+|+|++..||+.+.+.+....        +..+.|||+|||.++...   ...+.++....      .....++.+|++
T Consensus        82 ~~g~t~~~~al~~a~~~~~~~~~~~~~~~~~~~kvvvl~TDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~v  161 (209)
T d1q0pa_          82 LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVF  161 (209)
T ss_dssp             CTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHhhhccCccccCCCceEEEEEcCCCccCCCChHHHHHHHHHhhhhHHHHHHHHhcCCceEEe
Confidence            5689999999999999885431        223589999999987543   33334333321      112345789999


Q ss_pred             EcCCCCCHHHHHHHHHhCCCE--EEEcCCCCchHHHHHHHHHHhc
Q 007718          462 GVGLYCNHYFLQILAQIGRGY--YDSAYDPGSVDYRIRRFFTAAS  504 (591)
Q Consensus       462 GiG~~~~~~lL~~LA~~~~G~--~~~v~~~~~l~~~~~~~~~~~~  504 (591)
                      |+|.+.+...|+.||..++|.  ++.+.+.+++.+.+.+++.+..
T Consensus       162 gvg~~~~~~~L~~iAs~~~~~~~~f~~~~~~~L~~~~~~ii~~~~  206 (209)
T d1q0pa_         162 GVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQ  206 (209)
T ss_dssp             ECSSCCCHHHHHHHSCCCTTCCCEEETTC----------------
T ss_pred             cCCccCCHHHHHHHHcCCCCCeeEEEeCCHHHHHHHHHHHHHhhc
Confidence            999999999999999987664  7778888888887777776543

>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Capillary morphogenesis protein 2 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.8e-18  Score=157.46  Aligned_cols=173  Identities=17%  Similarity=0.177  Sum_probs=132.0

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCC
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG  402 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~Gg  402 (591)
                      .|.|++||||.||||.+ .+...|+++..+++.+. +++|++|+.|++.++.+.+.  ..+.+.+.++++.++.+.+.|+
T Consensus         4 ~~~Div~llD~S~Sm~~-~~~~~k~~~~~~~~~~~~~~~rvglv~fs~~~~~~~~l--~~~~~~~~~~l~~l~~~~~~g~   80 (181)
T d1shux_           4 RAFDLYFVLDKSGSVAN-NWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPL--TGDRGKISKGLEDLKRVSPVGE   80 (181)
T ss_dssp             SCEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEE--ECCHHHHHHHHHHHHTCCCCSC
T ss_pred             CceEEEEEEeCCCCccc-CHHHHHHHHHHHHHHhcCCCCEEEEEEeecceEEEEEe--cCCHHHHHHHhhhcccccCCCc
Confidence            46899999999999986 57778999999998875 47899999999999887654  2366778888888888888999


Q ss_pred             CchHHHHHHHHHhhhcC--CCCccEEEEEecCCCCChhh-HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007718          403 TNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERG-ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG  479 (591)
Q Consensus       403 T~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~~-i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~  479 (591)
                      |++..||+.+.+.+...  .+..+.||++|||.+++... ......+.+.   ..++++|++|+|+ .+...|+.||...
T Consensus        81 t~~~~al~~~~~~~~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~k---~~gv~v~~vgig~-~~~~~L~~ia~~~  156 (181)
T d1shux_          81 TYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISR---SLGASVYCVGVLD-FEQAQLERIADSK  156 (181)
T ss_dssp             CCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHH---HTTCEEEEEECSS-CCHHHHHHHSSSG
T ss_pred             chHHHHHHHHHHHhhhcccCCCceEEEEecCCCCCCCccHHHHHHHHHHH---HCCCEEEEEEeCc-cCHHHHHHHhCCC
Confidence            99999999999987643  45567899999999875432 2222233322   2359999999996 5999999999877


Q ss_pred             CCEEEEcCCCCchHHHHHHHHHHh
Q 007718          480 RGYYDSAYDPGSVDYRIRRFFTAA  503 (591)
Q Consensus       480 ~G~~~~v~~~~~l~~~~~~~~~~~  503 (591)
                      ++.|....+.+++...+..+.+++
T Consensus       157 ~~~~~~~~~~~~L~~~~~~i~~~i  180 (181)
T d1shux_         157 EQVFPVKGGFQALKGIINSILAQS  180 (181)
T ss_dssp             GGEEESSSTTHHHHHHHHHHHHTB
T ss_pred             CceEEecCCHHHHHHHHHHHHhhh
Confidence            665544334466766666665543

>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: von Willebrand factor A3 domain, vWA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1e-16  Score=149.33  Aligned_cols=161  Identities=15%  Similarity=0.142  Sum_probs=123.6

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC-
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG-  400 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~-  400 (591)
                      |.|++|++|.|+||....++.+|+++..+++.+.   .+.|++++.|+++.....+.....+.+   ++.+.|+++... 
T Consensus         2 PlDivfliD~S~s~~~~~f~~~k~~v~~~i~~~~i~~~~~rv~vv~f~~~~~~~~~l~~~~~~~---~l~~~i~~l~~~g   78 (184)
T d1atza_           2 PLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKA---HLLSLVDVMQREG   78 (184)
T ss_dssp             CEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHH---HHHHHHHTCCCCC
T ss_pred             ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEEeccceeeccccccccHH---HHHHHHHhhhhcc
Confidence            7899999999999999999999999999999984   356999999999988766543334444   455556777654 


Q ss_pred             CCCchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHH
Q 007718          401 GGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQIL  475 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~L  475 (591)
                      |+|++..||+.+.+.+...     ++..+.+||+|||..++...  +..+ .+.+   .++.+|++|+|.+.|...|+.|
T Consensus        79 g~t~~~~al~~~~~~~~~~~~g~R~~~~kvvvlltdg~~~d~~~--~~a~-~lk~---~gi~v~~igiG~~~~~~~L~~i  152 (184)
T d1atza_          79 GPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDSVD--AAAD-AARS---NRVTVFPIGIGDRYDAAQLRIL  152 (184)
T ss_dssp             CCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSCCH--HHHH-HHHH---TTEEEEEEEESSSSCHHHHHHH
T ss_pred             cccchhhhhhHHHHHhhhhhcCCCCCCceEEEEEEecCccchhh--HHHH-HHHH---cCcEEEEEEeCCcCCHHHHHHH
Confidence            7899999999999877542     34567899999999875422  2222 2222   3599999999999999999999


Q ss_pred             HHhCCC-EEEEcCCCCchHH
Q 007718          476 AQIGRG-YYDSAYDPGSVDY  494 (591)
Q Consensus       476 A~~~~G-~~~~v~~~~~l~~  494 (591)
                      |..+.+ ..+.+.+.+++..
T Consensus       153 as~~~~~~~~~~~~~~~L~~  172 (184)
T d1atza_         153 AGPAGDSNVVKLQRIEDLPT  172 (184)
T ss_dssp             TGGGGGGGCEEESSTTHHHH
T ss_pred             hCCCCcccEEEeCCHHHHHH
Confidence            986654 4566788888864

>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: von Willebrand factor A1 domain, vWA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.5e-16  Score=147.16  Aligned_cols=175  Identities=11%  Similarity=0.105  Sum_probs=134.0

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG  400 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~  400 (591)
                      .+.|++||+|.|+||....++.+|+++..+++.|   +.+.|++++.|++.++...+.....+.+.+.++   ++++...
T Consensus        12 ~~~Dl~fvlD~S~S~~~~~f~~~k~fv~~~i~~l~~~~~~~rvavv~y~~~~~~~~~l~~~~~~~~l~~~---i~~l~~~   88 (202)
T d1ijba_          12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRI---ASQVKYA   88 (202)
T ss_dssp             SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHH---HHTCCCC
T ss_pred             CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEecceeeecCCcccchHHHHHHH---HHhhhhh
Confidence            4689999999999999889999999999999999   346799999999998876655444455555444   6666654


Q ss_pred             --CCCchHHHHHHHHHhhhcC---CCCccEEEEEecCCCCCh--hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718          401 --GGTNILLPLKQAIKLLSDT---SESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ  473 (591)
Q Consensus       401 --GgT~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~~~--~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~  473 (591)
                        ++|++..+|+.+...+...   ++..+.+|++|||..+..  ..+.+.++...    ..++.||++|+|...+...|+
T Consensus        89 ~g~~~~~~~al~~~~~~~~~~~~r~~~~k~vivitdg~~~~~~~~~~~~~~~~l~----~~gv~i~~Vgig~~~~~~~L~  164 (202)
T d1ijba_          89 GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLK----KKKVIVIPVGIGPHANLKQIR  164 (202)
T ss_dssp             CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHH----HTTEEEEEEEESTTSCHHHHH
T ss_pred             hhccccHHHHHHHHHHHhhhhccCCCCcceEEEecccCCCcccchHHHHHHHHHH----HcCCeEEEEEeCCcCCHHHHH
Confidence              3488999999988766543   345568899999987543  23444433332    235899999999999999999


Q ss_pred             HHHHhCCC-EEEEcCCCCchHHHHHHHHHHhcc
Q 007718          474 ILAQIGRG-YYDSAYDPGSVDYRIRRFFTAASS  505 (591)
Q Consensus       474 ~LA~~~~G-~~~~v~~~~~l~~~~~~~~~~~~~  505 (591)
                      .||..+.+ .++.+.+.++++..+.++.+.++.
T Consensus       165 ~ia~~~~~~~~~~~~~~~~L~~~~~~i~~~iC~  197 (202)
T d1ijba_         165 LIEKQAPENKAFVLSSVDELEQQRDEIVSYLCD  197 (202)
T ss_dssp             HHHHHCTTCCCEEESSGGGHHHHHHHHHHHHHH
T ss_pred             HHhcCCCcCcEEEeCCHHHHHHHHHHHHHHHcC
Confidence            99988754 566678888898888888887753

>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha-x beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.4e-17  Score=153.33  Aligned_cols=175  Identities=17%  Similarity=0.170  Sum_probs=128.4

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC-CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-CCC
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GGG  402 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~-~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~Gg  402 (591)
                      +.|++||||.|+||...++..+|+++..+++.|.+ +.||+|+.|++.+..+.+...   ..+..+..+.++.+.. +|+
T Consensus         2 e~DivfvlD~S~Sm~~~~~~~~k~~~~~~i~~l~~~~~rv~vv~fs~~~~~~~~l~~---~~~~~~~~~~i~~~~~~~g~   78 (189)
T d1n3ya_           2 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEE---FRRSSNPLSLLASVHQLQGF   78 (189)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHHH---HHHCSSGGGGGTTCCCCCSC
T ss_pred             CccEEEEEeCCCCCChHHHHHHHHHHHHHHHHhCCCCCEEEEEEeeccceeeccccc---cccHHHHHHHHHhhhhhhhh
Confidence            46999999999999998999999999999999975 568999999999987654321   1233344555666664 489


Q ss_pred             CchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC----CCHHHHH
Q 007718          403 TNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY----CNHYFLQ  473 (591)
Q Consensus       403 T~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~----~~~~lL~  473 (591)
                      |++..||..+.+.+..     +++..+.+||+|||.+++.......+.+.+.+   .++.+|+||+|..    .+...|+
T Consensus        79 t~~~~al~~a~~~~f~~~~~~r~~~~kvivllTDG~~~~~~~~~~~~~~~~~~---~gv~i~~Vgig~~~~~~~~~~~L~  155 (189)
T d1n3ya_          79 TYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADA---AGIIRYAIGVGLAFQNRNSWKELN  155 (189)
T ss_dssp             BCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHH---TTCEEEEEEESGGGGSSTTHHHHH
T ss_pred             chHHHHHHHHHHHHhhhhcCCCCCCceEEEEEecCCCCCCcccHHHHHHHHHH---CCCceEEEeccccccccccHHHHH
Confidence            9999999999876432     13445689999999987543322333333322   3589999999953    4566799


Q ss_pred             HHHHhCC-CEEEEcCCCCchHHHHHHHHHHhcc
Q 007718          474 ILAQIGR-GYYDSAYDPGSVDYRIRRFFTAASS  505 (591)
Q Consensus       474 ~LA~~~~-G~~~~v~~~~~l~~~~~~~~~~~~~  505 (591)
                      .||..+. ++++.+.+.+.+.+.+.++.++++.
T Consensus       156 ~ias~~~~~~~~~~~~~~~l~~i~~~i~~~ic~  188 (189)
T d1n3ya_         156 DIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA  188 (189)
T ss_dssp             HHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHT
T ss_pred             HHhcCCCcceEEEeCCHHHHHHHHHHHHHhccc
Confidence            9988754 4566778878888877787777653

>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.4e-17  Score=152.57  Aligned_cols=175  Identities=15%  Similarity=0.153  Sum_probs=127.9

Q ss_pred             ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCC-CeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-C
Q 007718          323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQ-DSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-G  400 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~-d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~  400 (591)
                      ..|.|++|+||.|+||.+..++.+|+++..+++.|.++ .||+|+.|++.++...+..   +..+..+..+.|+++.. +
T Consensus         3 ~~~~DivfvlD~S~s~~~~~~~~~k~f~~~iv~~l~~~~~rv~vv~fs~~~~~~~~l~---~~~~~~~~~~~i~~i~~~~   79 (194)
T d1mf7a_           3 QEDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFK---EFQNNPNPRSLVKPITQLL   79 (194)
T ss_dssp             CCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHH---HHHHSCCHHHHHTTCCCCC
T ss_pred             CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCcCCceEEEEEEeccceeEEecc---ccCCHHHHHHHHhhhhhhh
Confidence            45789999999999999889999999999999999765 5999999999988654421   22344456677888876 4


Q ss_pred             CCCchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCCCC----CHH
Q 007718          401 GGTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLYC----NHY  470 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~-~i~~~v~~~~~~~~~~~~ri~t~GiG~~~----~~~  470 (591)
                      |+|++..||+.+.+.+..     .++..+.+||+|||.+++.. ...+.++.. .+   .++++|++|+|...    +..
T Consensus        80 ~~t~~~~al~~~~~~~~~~~~~~~~~~~kvvvliTDG~~~~~~~~~~~~~~~~-~~---~gv~i~~VGi~~~~~~~~~~~  155 (194)
T d1mf7a_          80 GRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEA-DR---EGVIRYVIGVGDAFRSEKSRQ  155 (194)
T ss_dssp             SCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHH-HH---TTEEEEEEEESGGGCSHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhhhccCCCCCceEEEEEecCCCCCCchhHHHHHHHH-HH---cCCeeEEEecCCcccccccHH
Confidence            889999999999887632     13445789999999976433 222222222 21   25899999999653    345


Q ss_pred             HHHHHHHhCCC-EEEEcCCCCchHHHHHHHHHHhc
Q 007718          471 FLQILAQIGRG-YYDSAYDPGSVDYRIRRFFTAAS  504 (591)
Q Consensus       471 lL~~LA~~~~G-~~~~v~~~~~l~~~~~~~~~~~~  504 (591)
                      .|+.||....+ .++.+.+.+.+...+.++.+++.
T Consensus       156 ~L~~ias~~~~~~~~~~~~~~~L~~~~~~l~~~i~  190 (194)
T d1mf7a_         156 ELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIF  190 (194)
T ss_dssp             HHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEeCCHHHHHHHHHHHHHHhc
Confidence            58888866544 45567887788777777776653

>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha2-beta1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.8e-16  Score=145.30  Aligned_cols=171  Identities=18%  Similarity=0.145  Sum_probs=124.9

Q ss_pred             ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC--C
Q 007718          326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA--G  400 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~--~  400 (591)
                      .|++|++|.|+||.  .++.+|++++.+++.+.   .+.||+|+.|++.+....+.....+.+.+..+   +..+..  +
T Consensus         2 ~DivfvlD~S~Sv~--~f~~~k~f~~~ii~~~~i~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~---i~~~~~~~g   76 (193)
T d1v7pc_           2 IDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVA---TSQTSQYGG   76 (193)
T ss_dssp             EEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTCSSHHHHHHH---HHHCCCCCC
T ss_pred             EEEEEEEECCCCCc--cHHHHHHHHHHHHHHcccCCCccEEEEEEeecceeeeecccchhhHHHHHHH---HHhhhhhcc
Confidence            38999999999995  69999999999999984   46799999999999876664444455554444   555543  3


Q ss_pred             CCCchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC-------
Q 007718          401 GGTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN-------  468 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~-------  468 (591)
                      |+|++..||+.+.+.+..     +++..+.+|++|||.+++.........+. .   ..++.+|++|+|...+       
T Consensus        77 ~~t~~~~AL~~a~~~~f~~~~~~R~~~~kvvVllTDG~s~d~~~~~~~~~~~-~---~~gv~v~~Igvg~~~~~~~~~~~  152 (193)
T d1v7pc_          77 DLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQC-N---HDNILRFGIAVLGYLNRNALDTK  152 (193)
T ss_dssp             SCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHH-H---HTTEEEEEEEECHHHHHTTCCCH
T ss_pred             CccchHHHHHHHHHhccccccCCCCCCceEEEEEecCCcCCCccHHHHHHHH-H---hCCCEEEEEEeCCcccccccccc
Confidence            679999999999997632     23445789999999988776544433333 2   2358999999985422       


Q ss_pred             --HHHHHHHHHhCCCE-EEEcCCCCchHHHHHHHHHHhcc
Q 007718          469 --HYFLQILAQIGRGY-YDSAYDPGSVDYRIRRFFTAASS  505 (591)
Q Consensus       469 --~~lL~~LA~~~~G~-~~~v~~~~~l~~~~~~~~~~~~~  505 (591)
                        ...|+.||..+.+. ++.+.+...+.+...++.+++++
T Consensus       153 ~~~~~L~~Ias~p~~~~~f~v~d~~~L~~i~~~l~~~Ic~  192 (193)
T d1v7pc_         153 NLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFS  192 (193)
T ss_dssp             HHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHhcCCCcceEEEcCCHHHHHHHHHHHHhhccc
Confidence              34588888876555 45578888888877777777654

>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha1-beta1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.4e-15  Score=142.42  Aligned_cols=169  Identities=14%  Similarity=0.077  Sum_probs=122.4

Q ss_pred             ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC--
Q 007718          326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG--  400 (591)
Q Consensus       326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~--  400 (591)
                      .|++||+|.|+||.  .++.+|+++..+++.+.   .+.||+|+.|++++....+.....+   ..++...++++...  
T Consensus         2 ~DivfvlD~S~S~~--~~~~~k~f~~~~i~~~~i~~~~~rv~vv~fs~~~~~~~~l~~~~~---~~~~~~~i~~~~~~~g   76 (192)
T d1pt6a_           2 LDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSS---TEEVLVAAKKIVQRGG   76 (192)
T ss_dssp             EEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTTCSS---HHHHHHHHHTCCCCCC
T ss_pred             eEEEEEEECCCCCC--CHHHHHHHHHHHHHHhccCCCCcEEEEEEEeccEEEEEeCCcchh---hHHHHHHHhhhhhhhh
Confidence            58999999999996  59999999999999984   3569999999999887665433333   34555667777654  


Q ss_pred             CCCchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC-------
Q 007718          401 GGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN-------  468 (591)
Q Consensus       401 GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~-------  468 (591)
                      ++|+...||+.+...+...     ++..+.+||+|||.++++..+.+.++... +   .++++|++|+|...+       
T Consensus        77 ~~~~~~~al~~~~~~~~~~~~g~R~~~~kviillTDG~~~d~~~~~~~a~~lk-~---~gi~v~~igvg~~~~~~~~~~~  152 (192)
T d1pt6a_          77 RQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQDCE-D---ENIQRFSIAILGSYNRGNLSTE  152 (192)
T ss_dssp             SSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHHHHH-H---TTEEEEEEEECHHHHHTTCCCH
T ss_pred             hccchHHHHHHHHHhhhccccCCCCCcceEEEEEecCCCCcchhhHHHHHHHH-H---CCCeEEEEEEeccccccccccc
Confidence            3578888999888755321     34456899999999887765554444332 2   358999999996543       


Q ss_pred             --HHHHHHHHHhCCC-EEEEcCCCCchHHHHHHHHHHh
Q 007718          469 --HYFLQILAQIGRG-YYDSAYDPGSVDYRIRRFFTAA  503 (591)
Q Consensus       469 --~~lL~~LA~~~~G-~~~~v~~~~~l~~~~~~~~~~~  503 (591)
                        ...|+.||....+ +++.+.+.+.+...+..+.+++
T Consensus       153 ~~~~~L~~IAs~p~~~~~f~v~d~~~L~~i~~~i~~~I  190 (192)
T d1pt6a_         153 KFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERI  190 (192)
T ss_dssp             HHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHH
T ss_pred             ccHHHHHHHhcCCCcccEEEcCCHHHHHHHHHHHHHHh
Confidence              3458888876444 4567888888877666666554

>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.7e-16  Score=144.14  Aligned_cols=165  Identities=15%  Similarity=0.080  Sum_probs=122.2

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCC-CeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-CCC
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQ-DSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GGG  402 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~-d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~Gg  402 (591)
                      |.|++||+|.|+||....++.+|+++..+++.+.++ .|++|+.|++++.......   +..+.+++.+.|+++.. +|+
T Consensus         2 ~~DivfllD~S~Si~~~~f~~~k~f~~~~i~~i~~~~~rvgvv~fs~~~~~~~~l~---~~~~~~~~~~~i~~i~~~~g~   78 (179)
T d1mjna_           2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFS---DYVKRKDPDALLKHVKHMLLL   78 (179)
T ss_dssp             CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHH---HHHHHCCHHHHHTTCCCCCBC
T ss_pred             CeEEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeeeeeEEechh---hccchHHHHHHHhhhhcccCc
Confidence            579999999999999889999999999999999765 4899999999988754432   22345556667888775 588


Q ss_pred             CchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC----HHHHH
Q 007718          403 TNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----HYFLQ  473 (591)
Q Consensus       403 T~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~----~~lL~  473 (591)
                      |++..||+.+...+..     +++..+.+|++|||..++.....          ...++.+|++|+|...+    ...|+
T Consensus        79 t~~~~AL~~~~~~~f~~~~g~R~~~~kvvvllTDG~s~d~~~~~----------~~~~i~~~~igvg~~~~~~~~~~~L~  148 (179)
T d1mjna_          79 TNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNID----------AAKDIIRYIIGIGKHFQTKESQETLH  148 (179)
T ss_dssp             CCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCCG----------GGTTSEEEEEEESGGGCSHHHHHTTG
T ss_pred             chHHHHHHHHHHHHhchhcCCCCCCCeEEEEEECCCCcccchHH----------HHhcCccceEEecccccchhhHHHHH
Confidence            9999999999875422     23446788999999987654321          12358999999997654    34578


Q ss_pred             HHHHhCCC-EEEEcCCCCchHHHHHHHHHH
Q 007718          474 ILAQIGRG-YYDSAYDPGSVDYRIRRFFTA  502 (591)
Q Consensus       474 ~LA~~~~G-~~~~v~~~~~l~~~~~~~~~~  502 (591)
                      .||....+ +++.+.+.+++...+.++.++
T Consensus       149 ~ias~p~~~~~~~~~~~~~L~~i~~~l~~~  178 (179)
T d1mjna_         149 KFASKPASEFVKILDTFEKLKDLCTELQKK  178 (179)
T ss_dssp             GGSCSCHHHHEEEESSGGGSCCHHHHHHHH
T ss_pred             HHhCCCccceEEEcCCHHHHHHHHHHHHhh
Confidence            88765443 456677777777666666554

>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku70 subunit N-terminal domain
domain: Ku70 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.2e-13  Score=129.73  Aligned_cols=172  Identities=13%  Similarity=0.131  Sum_probs=102.5

Q ss_pred             eEEEEEeCCcCCC-------cchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEe----------eecCcccCCHHH
Q 007718          327 DVVFLVDVSGSMQ-------GVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHL----------FSSSMKLASQGT  386 (591)
Q Consensus       327 ~ivfviD~SgSM~-------g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~----------~~~~~~~~~~~~  386 (591)
                      .++||||+|+||.       .++++.+++++..++..+   +++|+|+|+.|+++...          +.+ ....+...
T Consensus         4 aivf~ID~S~SM~~~d~~~~~s~~~~~~~~~~~~~~~~i~~~~~d~vglv~f~t~~~~~~~~~~~~~~~~~-l~~~~~~~   82 (220)
T d1jeya2           4 SLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQE-LDNPGAKR   82 (220)
T ss_dssp             EEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEE-EECCCHHH
T ss_pred             EEEEEEECCcccCccccCCCCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEEeccccccCCCcccchhhhhc-ccCchHHH
Confidence            3999999999994       357899999999998876   78999999999988642          111 11222232


Q ss_pred             HHHHHH---------HHhcCCCCCCCchHHHHHHHHHhhhcC--CCCccEEEEEecCCCCChhh--HHHHHHHHHhcCCC
Q 007718          387 IINATQ---------WLSSLVAGGGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERG--ICNEIKSYLTNTRS  453 (591)
Q Consensus       387 ~~~a~~---------~i~~l~~~GgT~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~~--i~~~v~~~~~~~~~  453 (591)
                      +.....         ........|+|++..||..|.+++...  +...+.|||+|||..+....  ....+...+.....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~al~~a~~~~~~~~~~~~~k~IiliTDg~~~~~~~~~~~~~~~~~a~~~~~  162 (220)
T d1jeya2          83 ILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRD  162 (220)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhhhhhhhhhcccCCCCccHHHHHHHHHHHHHhcccccCCcEEEEEecCCCCCCCcchhhHHHHHHHHHHhh
Confidence            222211         112234669999999999999998763  23357999999998653211  11111111111112


Q ss_pred             CCCeEEEEEcCCCCC-------HHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHH
Q 007718          454 ISPRICTFGVGLYCN-------HYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFT  501 (591)
Q Consensus       454 ~~~ri~t~GiG~~~~-------~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~  501 (591)
                      .++.|++||+|...+       ..++...+....+.+  ..+.+.+++.+.++..
T Consensus       163 ~gv~i~~i~ig~~~~~d~~~f~~~~l~~~~~~~~~~~--~~~~~~l~~l~~~i~~  215 (220)
T d1jeya2         163 TGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVH--FEESSKLEDLLRKVRA  215 (220)
T ss_dssp             HTEEEEEEEBCCTTCCCTTTTGGGTCC--------CC--CCCBCSHHHHHHHHHH
T ss_pred             hcceEEEEEeCCCCCcchhhhHHHHHhhcccccCccc--cCchhhHHHHHHHHHH
Confidence            358999999986432       122333333333443  3455667765555543

>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: RoRNP C-terminal domain-like
domain: 60-kda SS-A/Ro ribonucleoprotein, RoRNP
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.40  E-value=4.2e-13  Score=123.22  Aligned_cols=133  Identities=18%  Similarity=0.238  Sum_probs=92.7

Q ss_pred             ccCceEEEEEeCCcCCCc----chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718          323 VFRKDVVFLVDVSGSMQG----VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV  398 (591)
Q Consensus       323 ~~~~~ivfviD~SgSM~g----~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~  398 (591)
                      +..++++|+||+||||.+    .++..++.++...+..+.++++++++.|+++...+.    .....++.++.+.+... 
T Consensus         3 P~g~~~vl~iD~SGSM~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vv~F~~~~~~~~----~~~~~~~~~~~~~~~~~-   77 (174)
T d1yvra2           3 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPCP----ITVNMLLHEVVEKMSDI-   77 (174)
T ss_dssp             CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEECCS----CCTTSCHHHHHHHHTTC-
T ss_pred             CCCCeEEEEEECccccCCcccCccHHHHHHHHHHHHHhhccCCcEEEEEecCCccccc----cCccchHHHHHHHhhcc-
Confidence            346789999999999963    466777777777777788889999999999875432    12334566777766643 


Q ss_pred             CCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCC
Q 007718          399 AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGL  465 (591)
Q Consensus       399 ~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-~i~~~v~~~~~~~~~~~~ri~t~GiG~  465 (591)
                      ..|||++..+|+.+.+.    ....+.||++|||+.+... ...+.++....+ ....++++.++++.
T Consensus        78 ~~ggT~i~~al~~a~~~----~~~~~~ivllTDg~~~~g~~~~~~~l~~y~~~-~~~~~~~~~i~l~~  140 (174)
T d1yvra2          78 TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVEDVHPATALKQYREK-MGIPAKLIVCAMTS  140 (174)
T ss_dssp             CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHH-HTCCCEEEEEECSS
T ss_pred             ccccccHHHHHHHHHhh----hccCCEEEEEeCCCccCCCCCHHHHHHHHHHH-cCCCcEEEEEECcC
Confidence            46889999999988764    2345689999999976432 222222322221 13458899998864

>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku80 subunit N-terminal domain
domain: Ku80 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.9e-12  Score=123.01  Aligned_cols=134  Identities=16%  Similarity=0.122  Sum_probs=91.3

Q ss_pred             eEEEEEeCCcCCCc------chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeeecC-------------cccCCH
Q 007718          327 DVVFLVDVSGSMQG------VLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSS-------------MKLASQ  384 (591)
Q Consensus       327 ~ivfviD~SgSM~g------~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~-------------~~~~~~  384 (591)
                      .++||||+|+||..      ++++.||+++..+++++   +++|+|+|+.|+++.....+.             ......
T Consensus         4 aiv~~lD~S~SM~~~~~~~~srl~~ak~~~~~~v~~~~~~~~~d~vglV~f~~~~t~~~~~~~~~~~~i~~~~~~~~~~~   83 (236)
T d1jeyb2           4 AVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDF   83 (236)
T ss_dssp             EEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCH
T ss_pred             eEEEEEECChhhccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCCcccccccccccceEEEEeccccchh
Confidence            58999999999975      37999999999999887   689999999999986422111             111222


Q ss_pred             HHHHHHHHHHhcCC-CCCCCchHHHHHHHHHhhhc----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEE
Q 007718          385 GTIINATQWLSSLV-AGGGTNILLPLKQAIKLLSD----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRIC  459 (591)
Q Consensus       385 ~~~~~a~~~i~~l~-~~GgT~l~~aL~~a~~~l~~----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~  459 (591)
                      ...   ........ ..+.|++..+|..|++.+..    .+...+.|||+|||..+......+.+.+.+.+   .+++|+
T Consensus        84 ~~~---~~~~~~~~~~~~~~~~~~al~~a~~~~~~~~~~~~~~~r~IiL~TDG~~~~~~~~~~~~a~~l~~---~~I~i~  157 (236)
T d1jeyb2          84 DLL---EDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKK---CDISLQ  157 (236)
T ss_dssp             HHH---HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHH---TTEEEE
T ss_pred             hHH---HHHhhhccccccccchhHHHHHHHHHHHHhhhcccccccEEEEEecCCCCcChHHHHHHHHHHHH---cCCEEE
Confidence            222   11122222 34678889999998887753    23456799999999875443333334444333   359999


Q ss_pred             EEEcCCC
Q 007718          460 TFGVGLY  466 (591)
Q Consensus       460 t~GiG~~  466 (591)
                      +||+|..
T Consensus       158 ~ig~g~~  164 (236)
T d1jeyb2         158 FFLPFSL  164 (236)
T ss_dssp             EEESSCC
T ss_pred             EEecCCc
Confidence            9999865

>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin beta A domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3.7e-09  Score=101.85  Aligned_cols=173  Identities=13%  Similarity=0.049  Sum_probs=110.1

Q ss_pred             cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeee-----------cC-----------
Q 007718          324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFS-----------SS-----------  378 (591)
Q Consensus       324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~-----------~~-----------  378 (591)
                      -|.|++||+|+||||.. .|+.+|+++..+++.+   .++.||+++.|.+....-.           ++           
T Consensus         4 yPvDl~Fv~D~TgSM~~-~i~~vk~~i~~i~~~l~~~~~~~r~g~~~f~D~~~~p~~~~~~~~~~~~p~~~~~~~~~~~f   82 (248)
T d1tyeb2           4 YPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMF   82 (248)
T ss_dssp             CCEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSGGGGTCGGGGGTSCCCCCC
T ss_pred             CCeeEEEEEECCcCHHH-HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEecccCccccccchhhccCccccccccccccc
Confidence            58999999999999974 8999999998887655   5678999999988632100           00           


Q ss_pred             ----cccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHHH---hhhcCCCCccEEEEEecCCCCChh---------
Q 007718          379 ----MKLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAIK---LLSDTSESIPLIFLITDGTVGDER---------  438 (591)
Q Consensus       379 ----~~~~~~~~~~~a~~~i~~l~~~GgT~----l~~aL~~a~~---~l~~~~~~~~~IillTDG~~~~~~---------  438 (591)
                          .... ..+..++.++|+++.+.||.+    ...||..+..   .+.-+++..|.|||+||+-+....         
T Consensus        83 ~~~~~~~~-t~d~~~f~~~l~~~~~~GggD~pE~~~~Al~~a~~~~~~i~Wr~~a~r~viliTDA~~H~~~d~~l~g~~~  161 (248)
T d1tyeb2          83 GYKHVLTL-TDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQ  161 (248)
T ss_dssp             SEEEEEEE-ESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCTTSEEEEEEEESSCBCCTTGGGGGTCCS
T ss_pred             cceecCCC-CCCHHHHHHHHhheecccCCCCcchHHHHHHHHHHHhhhCCCCCCccEEEEEECCCCcccccccccccccc
Confidence                0000 135677788899999987766    4566666552   222234667899999998654100         


Q ss_pred             ----------------------hHHHHHHHHHhcCCCCCCe-EEEEEcCCCCCHHHHHHHHHhCCCEEEEcC--CCCchH
Q 007718          439 ----------------------GICNEIKSYLTNTRSISPR-ICTFGVGLYCNHYFLQILAQIGRGYYDSAY--DPGSVD  493 (591)
Q Consensus       439 ----------------------~i~~~v~~~~~~~~~~~~r-i~t~GiG~~~~~~lL~~LA~~~~G~~~~v~--~~~~l~  493 (591)
                                            ..+..+++.+.+.   ++. +|++  - .....+.+.|++..+|.+..+.  +.+.+.
T Consensus       162 ~~d~~~~~~~~~~~~~~~~~dyps~~ql~~~l~~~---~i~~ifav--t-~~~~~~Y~~l~~~~~g~~~~~l~~dssNi~  235 (248)
T d1tyeb2         162 PNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQK---NINLIFAV--T-ENVVNLYQNYSELIPGTTVGVLSMDSSNVL  235 (248)
T ss_dssp             CCCCCCCBCTTSBBGGGGTSCCCCHHHHHHHHHHT---TEEEEEEE--C-GGGHHHHHHHHHTSTTCEEEECSSCCHHHH
T ss_pred             cCCCccccCCCCcccccccccCCCHHHHHHHHHHh---CcEEEEEE--C-chhhHHHHHHHHhcCCcEEEEecccchhHH
Confidence                                  0133444444332   233 3433  2 2245678999999999877653  334455


Q ss_pred             HHHHHHHHHhc
Q 007718          494 YRIRRFFTAAS  504 (591)
Q Consensus       494 ~~~~~~~~~~~  504 (591)
                      +.+.+.++++.
T Consensus       236 ~lI~~~y~~i~  246 (248)
T d1tyeb2         236 QLIVDAYGKIR  246 (248)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHHh
Confidence            55555555544

>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=4.1e-06  Score=80.24  Aligned_cols=161  Identities=17%  Similarity=0.133  Sum_probs=106.1

Q ss_pred             CceEEEEEeCCc-CCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecC----------------------
Q 007718          325 RKDVVFLVDVSG-SMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSS----------------------  378 (591)
Q Consensus       325 ~~~ivfviD~Sg-SM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~----------------------  378 (591)
                      |--++||||+|. |....-++.+++++...|+.++   ++.+|+||+|++....+.-.                      
T Consensus         3 Pp~~vFvID~s~~a~~~g~l~~~~~si~~~l~~l~~~~~~~~VgiItf~~~V~~y~l~~~~~~~~~~~~~~~~~~~~dl~   82 (252)
T d1pd0a3           3 PATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLE   82 (252)
T ss_dssp             CCBEEEEEECSHHHHHHTHHHHHHHHHHTTTTTSCCTTSCCEECEEEESSSEEEEECCCGGGC-------CEEECCCCTT
T ss_pred             CCEEEEEEECCHHHhhhhHHHHHHHHHHHHHHhCcCCCCCcEEEEEEECCEEEEEEccCCccccccccccccccchhhhh
Confidence            456999999983 4443467888999988888886   67899999999987654100                      


Q ss_pred             --c----------ccCCHHHHHHHHHHHhcC---CCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh-----
Q 007718          379 --M----------KLASQGTIINATQWLSSL---VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-----  438 (591)
Q Consensus       379 --~----------~~~~~~~~~~a~~~i~~l---~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-----  438 (591)
                        .          .....+.+..+++.|...   ...+++.++.||+.|..++...   .-.|+++++|.++...     
T Consensus        83 ~~~~p~~~~~lv~~~e~~~~i~~~L~~l~~~~~~~~~~~~~~G~Al~~a~~~l~~~---gGkI~~f~sg~pt~GpG~l~~  159 (252)
T d1pd0a3          83 EPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV---GGKIIVVSGTLPNLGIGKLQR  159 (252)
T ss_dssp             CC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT---CEEEEEEESSCCCSSTTCCCC
T ss_pred             hccCCCCccceeeHHHHHHHHHHHHHhChhhcccCCCCcccHHHHHHHHHHHHhcC---CCEEEEEecCCCCCCCccccc
Confidence              0          011233455555555432   2337789999999999998653   2368899999875210     


Q ss_pred             ---------------------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCC
Q 007718          439 ---------------------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPG  490 (591)
Q Consensus       439 ---------------------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~  490 (591)
                                           +..+.+...+.+ .+..+.+|+++. +.++-..|..|++.|||..++..+.+
T Consensus       160 r~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~-~~isvdlF~~~~-~~~dl~~l~~l~~~TGG~~~~y~~f~  230 (252)
T d1pd0a3         160 RNESGVVNTSKETAQLLSCQDSFYKNFTIDCSK-VQITVDLFLASE-DYMDVASLSNLSRFTAGQTHFYPGFS  230 (252)
T ss_dssp             --------------------CCHHHHHHHHHTT-TTEEEEEEEEES-BCCCHHHHHHHHHTTTCCEEEEETCC
T ss_pred             ccccccccCcccchhcccchHHHHHHHHHHHHH-CCEEEEEEeccc-cccCcHHHhhHhhcCCceEEEeCCCC
Confidence                                 112223222221 234456666653 45788899999999999988766643

>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=1.1e-05  Score=78.03  Aligned_cols=162  Identities=17%  Similarity=0.048  Sum_probs=104.2

Q ss_pred             CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecC------------cccC----------
Q 007718          325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSS------------MKLA----------  382 (591)
Q Consensus       325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~------------~~~~----------  382 (591)
                      |--++||||+|.+  ...++..|+++...++.|+++.+|+||+|++..+.+.-.            ...+          
T Consensus         2 Pp~yvFvIDvs~~--a~~~~~l~~~l~~~l~~lp~~~~VgiITfd~~v~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~~~   79 (271)
T d2qtva3           2 PPIFFFVVDLTSE--TENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLT   79 (271)
T ss_dssp             CCEEEEEEECCSC--HHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEECSCSSCCEEEEEESSSCCCHHHHHHHHH
T ss_pred             CCEEEEEEECCcc--HHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCcCccceeccCccccCHHHHHHHhh
Confidence            4468999999754  567889999999999999999999999999987654210            0001          


Q ss_pred             -----------------------------------CHHHHHHHHHHHhcC------CCCCCCchHHHHHHHHHhhhcC-C
Q 007718          383 -----------------------------------SQGTIINATQWLSSL------VAGGGTNILLPLKQAIKLLSDT-S  420 (591)
Q Consensus       383 -----------------------------------~~~~~~~a~~~i~~l------~~~GgT~l~~aL~~a~~~l~~~-~  420 (591)
                                                         ..+.+..+++.|...      ....++.++.||..|..++... .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~  159 (271)
T d2qtva3          80 GQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYK  159 (271)
T ss_dssp             CCC-----------------CCTTCGGGGSEEHHHHHHHHHHHHHHCCCCCCCCCTTBCCCCCHHHHHHHHHHHHHHHCT
T ss_pred             ccccccccccccccccccccccCCccccccccHHHHHHHHHHHHHHhccCcccCCCCCCcccchHHHHHHHHHHHHhhcc
Confidence                                               123344444444321      1124567899999999998632 1


Q ss_pred             CCccEEEEEecCCCCCh------------------------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHH
Q 007718          421 ESIPLIFLITDGTVGDE------------------------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHY  470 (591)
Q Consensus       421 ~~~~~IillTDG~~~~~------------------------------~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~  470 (591)
                      +..-.|++++.|-++..                              ....+.+...+.+ .+..+.+|.+. .+.++-.
T Consensus       160 ~~gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~-~~isvDlF~~s-~~~~dl~  237 (271)
T d2qtva3         160 NIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAA-NGHTVDIFAGC-YDQIGMS  237 (271)
T ss_dssp             TSCEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHH-HTEEEEEEEEC-SSCCSHH
T ss_pred             CCCcEEEEEeCCCCCCCCccccccccccccCCccchhhhhhhhhhhHHHHHHHHHHHHHH-CCeEEEEEEec-CccCChH
Confidence            22346788888876410                              0011222222211 23445666653 3467889


Q ss_pred             HHHHHHHhCCCEEEEcCCCC
Q 007718          471 FLQILAQIGRGYYDSAYDPG  490 (591)
Q Consensus       471 lL~~LA~~~~G~~~~v~~~~  490 (591)
                      .|..|++.|||..++..+.+
T Consensus       238 ~l~~l~~~TGG~v~~~~~F~  257 (271)
T d2qtva3         238 EMKQLTDSTGGVLLLTDAFS  257 (271)
T ss_dssp             HHTHHHHTTTCCEEEESCTT
T ss_pred             HHHhHHhhCCceEEEeCCcC
Confidence            99999999999988877764