Citrus Sinensis ID: 007741

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-
Protein Sequence
MASSIVEGAERDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL
Secondary Structure (PSIPRED)
cccHHHHccHHHHHHHHHcccccccccccccccHHHHHcccccHHHHHHHHHcccccccccccccHHHccccccccHHHHHHHcccHHHHHHHHcccccccHHHccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHccccccHHHHHHHHHHccHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcccHHHEEEEEHHHHHHHHHHHHHHEHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHccccccEEEEc
Coil and Loop (DISEMBL)
MASSIVEGAErdlekgiispqlsqksigessltpspspspssatapalvlsnsgkridqagKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDsqmvgnlsgaefdTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYstkegltrknrsgfdplhiAAVQGHHAIVQVLLdhdpslsqttgpsnatplvsaaTRGHTAVVNELLskdgglleisrSNGKNALHFAARQGHVDVVKALLskdpqlarrtdkkgqTALHMAVKGQSCEVVKLLLEADAAIVMlpdkfgntalhvATRKKRTEIVTELLslpdtnvnaltrDHKTALDiaeglpsseeASEIKDCLARCGAvranelnqprdELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAsiftvpggdddngkAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKReknarmrsgsnswypsdysnseiDRIYAL
Flexible Loop (DISEMBL)
massivegaerdlekgiispqlsqksIGESSLTPSPSPSPSSATAPALVLsnsgkridqagKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETAlftaadkghIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEllslpdtnvnaltRDHKTALDIAEGLPSSEEASEIKDCLARCGAVranelnqprdelrKTVTQIKKDvhtqleqtrrtnknvhnISKELRKLHREGINNATNSVTVVAVLFATVAFASIftvpggdddnGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLvrgetkaekRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTyyvvkskrvrsirkreknarmrsgsnswypsdysnseidriyal
Low Complexity Region (SEG)
MASSIVEGAERDLEKGIISPQLSQKSIGEssltpspspspssatapalvlsNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGInnatnsvtvvavlfatvafaSIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYvvkskrvrsirkrekNARMRSGSNSWYPSDYSNSEIDRIYAL
Disordered region (IsUnstruct)
**************************************************************************DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD************************HTAVVNELLSKDGGLLEISR*NGKNALHFAARQGHVDVVKALL****************ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH*TAL****************DCLARCGAV**********************************************LHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSK*************************************
Disordered Region (DISOPRED)
*ASSIVEGAERDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVH**********************LHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKR****************************EIDRIYAL
Disordered Region (DISEMBL)
********AERDLEKGIISPQLS**********************PALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL**************AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG*********IKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRV******************WYPSDYSNSEIDRIYAL
Disordered Region (DISPRO)
*******GAERDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIR********************SNSEIDRIYAL
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSIVEGAERDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	591	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	yes	no	0.991	0.993	0.820	0.0
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.818	0.909	0.424	1e-102
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.796	0.898	0.426	7e-99
Q9ULH0	1771	Kinase D-interacting subs	yes	no	0.387	0.129	0.339	6e-22
Q9EQG6	1762	Kinase D-interacting subs	yes	no	0.387	0.129	0.343	9e-22
Q7T163	1672	Kinase D-interacting subs	yes	no	0.407	0.144	0.335	2e-21
Q80YE7	1442	Death-associated protein	yes	no	0.372	0.152	0.337	3e-21
Q804S5	1030	E3 ubiquitin-protein liga	no	no	0.475	0.272	0.305	1e-20
P53355	1430	Death-associated protein	no	no	0.372	0.153	0.324	6e-20
A5PMU4	1280	Ankyrin repeat and steril	no	no	0.439	0.203	0.340	1e-19

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  974 bits (2518), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/592 (82%), Positives = 534/592 (90%), Gaps = 6/592 (1%)

Query: 2   ASSIVEGAERDLEKG-IISPQLSQKSIGESSLTPSPSPSPS-SATAPALVLSNSGKRIDQ 59
           ASS V+G ERD+EKG +I  Q S+       + PSP+PSPS +ATAPALVLSNSGKR+DQ
Sbjct: 3   ASSYVDG-ERDMEKGGMILLQSSENQ--NPMIDPSPTPSPSATATAPALVLSNSGKRMDQ 59

Query: 60  AGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRS 119
           AGKKKYVKQVTGRHNDTELHLAAQRGDL AV+QIL  I+SQM G LSG EFD EVAEIR+
Sbjct: 60  AGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRA 119

Query: 120 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 179
           S+VNEVNELGETALFTAADKGH++VV ELLKYS++E + +KNRSG+DPLHIAA+QGHHAI
Sbjct: 120 SIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAI 179

Query: 180 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 239
           V+VLLDHD +LSQT GPSNATPLVSAA RGHT VVN+LLSK G LLEISRSN KNALH A
Sbjct: 180 VEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLA 239

Query: 240 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 299
           ARQGHV+V+KALLSKDPQLARR DKKGQTALHMAVKGQS EVVKLLL+AD AIVM PDK 
Sbjct: 240 ARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKS 299

Query: 300 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR 359
            NTALHVATRKKR EIV  LLSLPDTN N LTRDHKTALDIAEGLP SEE+S IK+CLAR
Sbjct: 300 CNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLAR 359

Query: 360 CGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNAT 419
            GA+RANELNQPRDELR TVTQIK DVH QLEQT+RTNKNVHNISKELRKLHREGINNAT
Sbjct: 360 SGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNAT 419

Query: 420 NSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQ 479
           NSVTVVAVLFATVAFA+IFTVPGGD+++G AVVV RASFKIFFIFNA+ALFTSLAVVVVQ
Sbjct: 420 NSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQ 479

Query: 480 ITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIM 539
           ITLVRGETKAEKRVVEVINKLMWLAS+CTSVAF+ASSYIVVGR++EWAA LVTVVGG+IM
Sbjct: 480 ITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELVTVVGGVIM 539

Query: 540 AGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL 591
           AGVLGTMTYYVVKSKR RS+RK+ K+AR RSGSNSW+ SD+SNSE+D I+A+
Sbjct: 540 AGVLGTMTYYVVKSKRTRSMRKKVKSAR-RSGSNSWHHSDFSNSEVDPIFAI 590

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/513 (42%), Positives = 317/513 (61%), Gaps = 29/513 (5%)

Query: 100 QMVGNLSGAEFDTE------VAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYST 153
           Q+V NL+G E   E      VAE+ S      N+ GETA++ +A +   ++   L+++S+
Sbjct: 28  QLVDNLTGDELIDESSPCSAVAELMSVQ----NDAGETAVYISAAENLEDIFRYLIRFSS 83

Query: 154 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAV 213
            E +  +++S  +  H+AA +GH  IV+ LL   P L +    SN +PL +AA + H  +
Sbjct: 84  LETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEI 143

Query: 214 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 273
           VN +L  D     I R NGK +LH A R G + +VKAL+ KD  +    DKKGQTALHMA
Sbjct: 144 VNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMA 203

Query: 274 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRD 333
           VKG+S EVV+ +L+AD  I+   D+ GNTALH+ATRK R +I + LL+     VNA+   
Sbjct: 204 VKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQ 263

Query: 334 HKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDE---LRKTVTQIKKDVHTQL 390
            +TA+D+A+ L  SE A EI + L   GA     + +  DE   L++ V+ IK +V +QL
Sbjct: 264 KETAMDLADKLQYSESALEINEALVEAGAKHGRFIGRE-DEARALKRAVSDIKHEVQSQL 322

Query: 391 EQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGG----DDD 446
            Q  +TN+ V  I+KELRKLHRE + N TNS+TVVAVLFA++AF +IF +PG        
Sbjct: 323 LQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSH 382

Query: 447 NGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASV 506
            G+A +  R  F++F + NA +LF SLAVVVVQITLV  +T+A+K+VV V+NKLMW A  
Sbjct: 383 VGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAACA 442

Query: 507 CTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNA 566
           CT  AF+A ++ VVG+ + W AI +T++G  I+ G L +M Y+V + +R RS    ++  
Sbjct: 443 CTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFVFR-QRFRSGNDSQR-- 499

Query: 567 RMRSGSNSW-------YPSDYSN-SEIDRIYAL 591
           R+R GS+         + SD+ + S+ ++I AL
Sbjct: 500 RIRRGSSKSFSWSYSHHVSDFEDESDFEKIIAL 532

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  361 bits (927), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 219/513 (42%), Positives = 311/513 (60%), Gaps = 42/513 (8%)

Query: 62  KKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSV 121
           KK   KQ+T R +DT LH A + G    +         +M+G   G E    +AE     
Sbjct: 5   KKTMTKQMTARRDDTPLHTAVREGKTDLL--------LEMIGEHDGVELKELLAE----- 51

Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
               N+ GETAL+ AA+ G+ ++V  L+K+S       K ++GFD  HIAA  G+  ++ 
Sbjct: 52  ---QNQSGETALYVAAEYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLD 108

Query: 182 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
           VL++ +P LS T   S  T L +AA++GH  +V  LL K   L  I+RSNGK ALH AAR
Sbjct: 109 VLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAAR 168

Query: 242 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 301
            GH  +VK L+ K   +  R DKKGQTALHMAVKGQ+ E+V +L+EAD +++   D  GN
Sbjct: 169 NGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGN 228

Query: 302 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE--GLPSSEEASEIKDCLAR 359
           T LH+A RK R EIV  +L   + +  A+ +  +TALDIAE  GL       EI   L +
Sbjct: 229 TPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGL------HEIVPLLQK 282

Query: 360 CG-----AVRANELNQPRD---ELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLH 411
            G     +++  E  +P     +L++TV++I  +VHTQLEQT RT + +  I+K + K+H
Sbjct: 283 IGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMH 342

Query: 412 REGINNATNSVTVVAVLFATVAFASIFTVPGGDDDN----------GKAVVVRRASFKIF 461
            EG+NNA NS T+VA+L ATVAFA+IF VPG   D+          G+A    R  F IF
Sbjct: 343 TEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIF 402

Query: 462 FIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVG 521
            +F++ ALF SLAVVVVQ ++V  E +A+K+++ +INKLMW+A +  SVAF++ S++VVG
Sbjct: 403 VVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVG 462

Query: 522 RRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSK 554
            + +  A+ VT +G LIM   LGTM Y+V+ ++
Sbjct: 463 EKEKPLAVGVTAIGALIMVSTLGTMCYWVIANR 495

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ULH0|KDIS_HUMAN Kinase D-interacting substrate of 220 kDa OS=Homo sapiens GN=KIDINS220 PE=1 SV=3

 Score =  106 bits (264), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/268 (33%), Positives = 141/268 (52%), Gaps = 39/268 (14%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFT 135
           T L +AA++G+L  VK+++           +GA  + E  +              TAL +
Sbjct: 40  TPLMIAAEQGNLEIVKELIK----------NGANCNLEDLD------------NWTALIS 77

Query: 136 AADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQT 193
           A+ +GH+ +V ELLK      L  ++  G+  L  A  +G   +V++LL H  +PS+   
Sbjct: 78  ASKEGHVHIVEELLKCGVN--LEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSV--- 132

Query: 194 TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 253
           TG  +  P++ AA RGH  +V+ LL ++G  +  S   G   L +AAR+GH++ VK LL+
Sbjct: 133 TGLYSVYPIIWAAGRGHADIVH-LLLQNGAKVNCSDKYGTTPLVWAARKGHLECVKHLLA 191

Query: 254 KDPQLARRTDKKG---QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 310
               +    D++G    TAL +AVKG   + VK +L+ +   V L DK GNTAL +A+++
Sbjct: 192 ----MGADVDQEGANSMTALIVAVKGGYTQSVKEILKRNPN-VNLTDKDGNTALMIASKE 246

Query: 311 KRTEIVTELLSLPDTNVNALTRDHKTAL 338
             TEIV +LL    T VN   R   T L
Sbjct: 247 GHTEIVQDLLDA-GTYVNIPDRSGDTVL 273

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration (By similarity). Modulates stress-induced apoptosis of melanoma cells via regulation of the MEK/ERK signaling pathway.

Homo sapiens (taxid: 9606)

>sp|Q9EQG6|KDIS_RAT Kinase D-interacting substrate of 220 kDa OS=Rattus norvegicus GN=Kidins220 PE=1 SV=2

 Score =  105 bits (263), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 141/268 (52%), Gaps = 39/268 (14%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFT 135
           T L LAA++G++  VK++L           +GA  + E  +              TAL +
Sbjct: 40  TPLMLAAEQGNVEIVKELLK----------NGANCNLEDLD------------NWTALIS 77

Query: 136 AADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQT 193
           A+ +GHI +V ELLK  +   L  ++  G+  L  A  +G   +V++LL H  +PS+   
Sbjct: 78  ASKEGHIHIVEELLK--SGASLEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSV--- 132

Query: 194 TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 253
           TG  +  P++ AA RGH  +V+ LL ++G  +  S   G   L +AAR+GH++ VK LL+
Sbjct: 133 TGLYSVYPIIWAAGRGHADIVH-LLLQNGAKVNCSDKYGTTPLVWAARKGHLECVKHLLA 191

Query: 254 KDPQLARRTDKKG---QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 310
               +    D++G    TAL +AVKG   + VK +L+ +   V L DK GNTAL +A+++
Sbjct: 192 ----MGADVDQEGANSMTALIVAVKGGYTQSVKEILKRNPN-VNLTDKDGNTALMIASKE 246

Query: 311 KRTEIVTELLSLPDTNVNALTRDHKTAL 338
              EIV +LL    T VN   R   T L
Sbjct: 247 GHIEIVQDLLDA-GTYVNIPDRSGDTVL 273

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration.

Rattus norvegicus (taxid: 10116)

>sp|Q7T163|KDIS_DANRE Kinase D-interacting substrate of 220 kDa OS=Danio rerio GN=kidins220 PE=2 SV=2

 Score =  104 bits (260), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 141/277 (50%), Gaps = 36/277 (12%)

Query: 67  KQVTGRHND--TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNE 124
           K+V GR ++  T L LA+++G L  V++++                       R + VN 
Sbjct: 29  KEVDGRSDNGQTPLMLASEQGSLEIVQELIR----------------------RGANVNL 66

Query: 125 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
            +    +AL +AA +GH+EVV ELL+ S    +  ++  G+  L  A+ +G   +  VLL
Sbjct: 67  DDVDCWSALISAAKEGHVEVVKELLENSAY--IEHRDMGGWTALTWASYKGRVEVATVLL 124

Query: 185 DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 244
           ++  + + T    +  P++ AA RGH  +V +LL + G  +  S   G   L +AAR+GH
Sbjct: 125 ENGANPNTTGQQYSVYPIIWAAGRGHAEIV-KLLLEHGAKVNCSDKYGTTPLIWAARKGH 183

Query: 245 VDVVKALLSKDPQLARRTDKKG---QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 301
            D V  LL     +    D++G    TAL +AVKG   EVVK LL+ +  + M  DK GN
Sbjct: 184 YDCVMHLLENGADV----DQEGANSMTALIVAVKGGYTEVVKELLKRNPNVNMT-DKDGN 238

Query: 302 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 338
           TAL +A ++  TEIV +LL    T VN   R   T L
Sbjct: 239 TALMIAAKEGYTEIVQDLLD-AGTYVNIPDRSGDTVL 274

Downstream target for both neurotrophin and ephrin receptors.

Danio rerio (taxid: 7955)

>sp|Q80YE7|DAPK1_MOUSE Death-associated protein kinase 1 OS=Mus musculus GN=Dapk1 PE=1 SV=3

 Score =  103 bits (258), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 188
           GETAL  AA  GH +VV  L  + +      K      PLH AA  G++++ + L +   
Sbjct: 445 GETALHVAARYGHADVVQLLCSFGSNPDFQDKEEE--TPLHCAAWHGYYSVAKALCEVGC 502

Query: 189 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 248
           +++        TPL++A+ RG+  +V E L++ G  L  S  +G  ALH A R+  ++V+
Sbjct: 503 NVN-IKNREGETPLLTASARGYHDIV-ECLAEHGADLNASDKDGHIALHLAVRRCQMEVI 560

Query: 249 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 308
           K LL          D+ G T LH+A K  S  +V  L EA   +  + +K+G T LH+A 
Sbjct: 561 KTLLGHG-SFVDFQDRHGNTPLHVACKDGSAPIVVALCEASCNLD-ISNKYGRTPLHLAA 618

Query: 309 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR 359
                ++V   L L   NV ALT D KTA D+A+    +E+   +   LAR
Sbjct: 619 NNGILDVV-RYLCLMGANVEALTSDGKTAEDLAK----AEQHEHVAGLLAR 664

Calcium/calmodulin-dependent serine/threonine kinase involved in multiple cellular signaling pathways that trigger cell survival, apoptosis, and autophagy. Regulates both type I apoptotic and type II autophagic cell deaths signal, depending on the cellular setting. The former is caspase-dependent, while the latter is caspase-independent and is characterized by the accumulation of autophagic vesicles. Phosphorylates PIN1 resulting in inhibition of its catalytic activity, nuclear localization, and cellular function. Phosphorylates TPM1, enhancing stress fiber formation in endothelial cells. Phosphorylates STX1A and significantly decreases its binding to STXBP1. Phosphorylates PRKD1 and regulates JNK signaling by binding and activating PRKD1 under oxidative stress. Phosphorylates BECN1, reducing its interaction with BCL2 and BCL2L1 and promoting the induction of autophagy. Phosphorylates TSC2, disrupting the TSC1-TSC2 complex and stimulating mTORC1 activity in a growth factor-dependent pathway. Phosphorylates RPS6, MYL9 and DAPK3 (By similarity). Acts as a signaling amplifier of NMDA receptors at extrasynaptic sites for mediating brain damage in stroke. Cerebral ischemia recruits DAPK1 into the NMDA receptor complex and it phosphorylates GRINB at Ser-1303 inducing injurious Ca(2+) influx through NMDA receptor channels, resulting in an irreversible neuronal death.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1

 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 159/344 (46%), Gaps = 63/344 (18%)

Query: 30  SSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGA 89
           +S T +P+     A A + V + SG+R+ Q  KK +  Q +G  N+ EL  AA  GDL  
Sbjct: 388 TSWTYNPAAVTKVAPAGSAVTNASGERLSQLLKKLFETQESGDINE-ELVKAAANGDLAK 446

Query: 90  VKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELL 149
           V+ IL   D  + G  +G                       TA+  A+  GH++V+  LL
Sbjct: 447 VEDILKRPDVDVNGQCAG----------------------HTAMQAASQNGHVDVLKLLL 484

Query: 150 KYST------KEG-------------------------LTRKNRSGFDPLHIAAVQGHHA 178
           K+S       K+G                         L  +N+    PLHIA  +GH  
Sbjct: 485 KHSVDLEAEDKDGDRAVHHASFGDEGSVIEVLHRGGADLNARNKRRQTPLHIAVNKGHLQ 544

Query: 179 IVQVLLDHD--PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL 236
           +V+ LLD    PSL  + G    TPL  A ++    +++ LL   G  + I+ +NG NAL
Sbjct: 545 VVKTLLDFGCHPSLQDSEGD---TPLHDAISKKRDDMLSVLLEA-GADVTITNNNGFNAL 600

Query: 237 HFAARQGHVDVVKALLSKDPQLARRTDKK--GQTALHMAVKGQSCEVVKLLLEADAAIVM 294
           H AA +G+   ++ LLSK P+     +KK  G TALH+A      EV +LL+    A + 
Sbjct: 601 HHAALRGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLD 660

Query: 295 LPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 338
           + +    TALH+A  ++ T+IV  LL   +  ++   +D  T L
Sbjct: 661 VQNVNQQTALHLAVERQHTQIV-RLLVRAEAKLDVQDKDGDTPL 703

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. It thereby participates in many processes regulated by the Notch signaling pathway, such as midline cell fate specification prior to germ layer formation, patterning of sensory cell differentiation in the ear, neurogenesis of the hindbrain and commitment to a secretory fate in the intestine. Essential for early embryonic development.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P53355|DAPK1_HUMAN Death-associated protein kinase 1 OS=Homo sapiens GN=DAPK1 PE=1 SV=6

 Score = 99.4 bits (246), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 188
           GE AL  AA  GH +V   L  + +   +  K      PLH AA  G++++ + L +   
Sbjct: 445 GEMALHVAARYGHADVAQLLCSFGSNPNIQDKEEE--TPLHCAAWHGYYSVAKALCEAGC 502

Query: 189 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 248
           +++        TPL++A+ RG+  +V E L++ G  L     +G  ALH A R+  ++V+
Sbjct: 503 NVN-IKNREGETPLLTASARGYHDIV-ECLAEHGADLNACDKDGHIALHLAVRRCQMEVI 560

Query: 249 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 308
           K LLS+        D+ G T LH+A K  +  +V  L EA+  +  + +K+G T LH+A 
Sbjct: 561 KTLLSQG-CFVDYQDRHGNTPLHVACKDGNMPIVVALCEANCNLD-ISNKYGRTPLHLAA 618

Query: 309 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR 359
                ++V   L L   +V ALT D KTA D+A     SE+   +   LAR
Sbjct: 619 NNGILDVV-RYLCLMGASVEALTTDGKTAEDLAR----SEQHEHVAGLLAR 664

Isoform 2 cannot induce apoptosis but can induce membrane blebbing.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 145/279 (51%), Gaps = 19/279 (6%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGA-EFDTEVAEIRSSVVNEVNELGETAL 133
           + EL  AA+ G++G V+++L G    ++G+ SG+      ++  R   VN V+  G T L
Sbjct: 4   EQELLEAARTGNVGLVEKLLSG-KKGLLGSGSGSIPLPGLLSMWRGLNVNCVDGSGYTPL 62

Query: 134 FTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT 193
             A+  GH +VV +LL++     ++  +  G  PLH+AA +G   IVQ+L+ H PS S+ 
Sbjct: 63  HHASLNGHRDVVLKLLQFEASTNVS--DSKGCFPLHLAAWRGDVDIVQILIHHGPSHSRV 120

Query: 194 TGPS--NATPLVSAATRGHTAVVNELLSKDGGLLEISRSN--GKNALHFAARQGHVDVVK 249
              +    T L  AA  GH+ VV  LL +   L + S  N  G+  L  AA  G + VV+
Sbjct: 121 NEQNLEKETALHCAAQYGHSEVVRVLLQE---LTDPSMRNSRGETPLDLAALYGRLQVVR 177

Query: 250 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR 309
            LL+  P L     +K  T LH+A +      V++LLEAD  +    +K   +ALH A  
Sbjct: 178 MLLTAHPNLMSCNTRK-HTPLHLAARNGHYATVQVLLEADMDVNTQTEK--GSALHEAAL 234

Query: 310 KKRTEIVTELLSLPDTNVNALTRD--HKTALDIAEGLPS 346
             + ++V  LL   D+ ++A  RD   +TALDI    PS
Sbjct: 235 FGKMDVVQLLL---DSGIDANIRDCQGRTALDILREHPS 270

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	591
224100903	588	predicted protein [Populus trichocarpa]	0.993	0.998	0.846	0.0
255571695	570	ankyrin repeat-containing protein, putat	0.918	0.952	0.900	0.0
15230470	590	ankyrin repeats-containing protein [Arab	0.991	0.993	0.820	0.0
15795155	1100	ankyrin-like protein [Arabidopsis thalia	0.991	0.532	0.787	0.0
449464198	590	PREDICTED: ankyrin repeat-containing pro	0.989	0.991	0.815	0.0
225448809	589	PREDICTED: ankyrin repeat-containing pro	0.993	0.996	0.802	0.0
356576855	585	PREDICTED: ankyrin repeat-containing pro	0.920	0.929	0.830	0.0
128168562	596	IGN1 [Lotus japonicus] gi|128168568|dbj|	0.959	0.951	0.782	0.0
225439834	638	PREDICTED: ankyrin repeat-containing pro	0.986	0.913	0.746	0.0
356536512	592	PREDICTED: ankyrin repeat-containing pro	0.920	0.918	0.821	0.0

>gi|224100903|ref|XP_002312060.1| predicted protein [Populus trichocarpa] gi|222851880|gb|EEE89427.1| predicted protein [Populus trichocarpa]

 Score =  998 bits (2579), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/592 (84%), Positives = 542/592 (91%), Gaps = 5/592 (0%)

Query: 1   MASSIVEGAERDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQA 60
           MAS + EG+ERDLEKG++ PQL+Q  + + S         S++TAPALVLSNSGKRIDQA
Sbjct: 1   MASPMEEGSERDLEKGLVQPQLNQNPLTDPS---PTPSPSSTSTAPALVLSNSGKRIDQA 57

Query: 61  GKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSS 120
           GKKKYVKQVTGRHNDTELHLAAQRG+L  V+ IL  I+SQMVG LSGA+FDTEVAEIR+S
Sbjct: 58  GKKKYVKQVTGRHNDTELHLAAQRGNLADVQHILNDINSQMVGTLSGADFDTEVAEIRAS 117

Query: 121 VVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIV 180
           VVNEVNELGETALFTAADKGH+EVV ELLKYS KE LTRKNRSG+DPLHIAAVQGHHAIV
Sbjct: 118 VVNEVNELGETALFTAADKGHLEVVKELLKYSNKECLTRKNRSGYDPLHIAAVQGHHAIV 177

Query: 181 QVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 240
           QVLLDHDPSLSQT GPSNATPLVSAATRGHTAVV ELLSKDG LLEISRSNGKNALH AA
Sbjct: 178 QVLLDHDPSLSQTHGPSNATPLVSAATRGHTAVVIELLSKDGSLLEISRSNGKNALHLAA 237

Query: 241 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG 300
           RQGHVD+VKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL+ADAAIVMLPDKFG
Sbjct: 238 RQGHVDIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLDADAAIVMLPDKFG 297

Query: 301 NTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARC 360
           NTALHVATRKKR EIV ELL LPDTNVNALTRDHKTALDIAE L  SEE+S+IK+CL R 
Sbjct: 298 NTALHVATRKKRAEIVNELLLLPDTNVNALTRDHKTALDIAEELVLSEESSDIKECLYRY 357

Query: 361 GAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATN 420
           GA+RANELNQPRDELRKTVTQIK DVHTQLEQTRRTNKNVHNISKELRKLHREGINNATN
Sbjct: 358 GALRANELNQPRDELRKTVTQIKNDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATN 417

Query: 421 SVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQI 480
           SVTVVAVLFATVAFA+IFTVPGGD ++G AVVV   SFKIFFIFNAIALFTSLAVVVVQI
Sbjct: 418 SVTVVAVLFATVAFAAIFTVPGGDLNSGMAVVVSHTSFKIFFIFNAIALFTSLAVVVVQI 477

Query: 481 TLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMA 540
           TLVRGETKAE+RVVEVINKLMWLASVCTSVAF+AS+YIVVGR HEWAA+L+T+VGG+IM 
Sbjct: 478 TLVRGETKAERRVVEVINKLMWLASVCTSVAFMASAYIVVGRTHEWAAVLITIVGGVIMT 537

Query: 541 GVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNS-WYPSDYSNSEIDRIYAL 591
            VLGTMTYYVVKSKR+RS+RKR+K++R RSGSNS  + S++SNSE+DRIYAL
Sbjct: 538 AVLGTMTYYVVKSKRIRSMRKRDKHSR-RSGSNSGHHNSEFSNSEVDRIYAL 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571695|ref|XP_002526791.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223533867|gb|EEF35597.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  996 bits (2575), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/544 (90%), Positives = 514/544 (94%), Gaps = 1/544 (0%)

Query: 48  LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSG 107
           LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQ+GDL AVKQIL  I+SQ+VG LSG
Sbjct: 28  LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQQGDLAAVKQILNDINSQLVGTLSG 87

Query: 108 AEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDP 167
            EFD EV EIR+SVVNEVNELGETALFTAADKGH+EVV ELLKYS+KE +TRKNRS FD 
Sbjct: 88  EEFDAEVVEIRASVVNEVNELGETALFTAADKGHLEVVKELLKYSSKECITRKNRSNFDA 147

Query: 168 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 227
           LHIAA+QGHH IVQVLLDHDPSLS+T GPSNATPLVSAATRGHTAVVNELLSKDG LLEI
Sbjct: 148 LHIAAMQGHHGIVQVLLDHDPSLSRTYGPSNATPLVSAATRGHTAVVNELLSKDGSLLEI 207

Query: 228 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 287
           SRSNGKNALH AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE
Sbjct: 208 SRSNGKNALHLAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 267

Query: 288 ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS 347
           ADAAIVMLPDKFG TALHVATRKKR EIV ELL LPDTNVNALTR+HKTALDIAE L  S
Sbjct: 268 ADAAIVMLPDKFGYTALHVATRKKRVEIVNELLLLPDTNVNALTREHKTALDIAEELTLS 327

Query: 348 EEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKEL 407
           EE+SEIK+CL R GAVRANELNQPRDELRKTVTQIKKDVHTQLEQTR+TNKNVHNISKEL
Sbjct: 328 EESSEIKECLCRYGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRKTNKNVHNISKEL 387

Query: 408 RKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAI 467
           RKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGDD+NG AVVV  ASFKIFFIFNAI
Sbjct: 388 RKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDDNNGIAVVVGHASFKIFFIFNAI 447

Query: 468 ALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWA 527
           ALFTSLAVVVVQITLVRGETKAE+RVVEVINKLMWLASVCTSVAFIASSYIVVGR+HEWA
Sbjct: 448 ALFTSLAVVVVQITLVRGETKAERRVVEVINKLMWLASVCTSVAFIASSYIVVGRKHEWA 507

Query: 528 AILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDR 587
           A+LVTVVGG+IMAGVLGTMTYYVVKSKR+RS+RKREK+AR RSGSNSW  SD+SNSE+DR
Sbjct: 508 AVLVTVVGGVIMAGVLGTMTYYVVKSKRIRSMRKREKSAR-RSGSNSWQHSDFSNSEVDR 566

Query: 588 IYAL 591
           IYAL
Sbjct: 567 IYAL 570

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230470|ref|NP_187842.1| ankyrin repeats-containing protein [Arabidopsis thaliana] gi|75308849|sp|Q9C7A2.1|Y3236_ARATH RecName: Full=Ankyrin repeat-containing protein At3g12360 gi|12321945|gb|AAG51002.1|AC069474_1 ankyrin-like protein; 93648-91299 [Arabidopsis thaliana] gi|332641667|gb|AEE75188.1| ankyrin repeats-containing protein [Arabidopsis thaliana]

 Score =  974 bits (2518), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/592 (82%), Positives = 534/592 (90%), Gaps = 6/592 (1%)

Query: 2   ASSIVEGAERDLEKG-IISPQLSQKSIGESSLTPSPSPSPS-SATAPALVLSNSGKRIDQ 59
           ASS V+G ERD+EKG +I  Q S+       + PSP+PSPS +ATAPALVLSNSGKR+DQ
Sbjct: 3   ASSYVDG-ERDMEKGGMILLQSSENQ--NPMIDPSPTPSPSATATAPALVLSNSGKRMDQ 59

Query: 60  AGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRS 119
           AGKKKYVKQVTGRHNDTELHLAAQRGDL AV+QIL  I+SQM G LSG EFD EVAEIR+
Sbjct: 60  AGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRA 119

Query: 120 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 179
           S+VNEVNELGETALFTAADKGH++VV ELLKYS++E + +KNRSG+DPLHIAA+QGHHAI
Sbjct: 120 SIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAI 179

Query: 180 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 239
           V+VLLDHD +LSQT GPSNATPLVSAA RGHT VVN+LLSK G LLEISRSN KNALH A
Sbjct: 180 VEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLA 239

Query: 240 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 299
           ARQGHV+V+KALLSKDPQLARR DKKGQTALHMAVKGQS EVVKLLL+AD AIVM PDK 
Sbjct: 240 ARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKS 299

Query: 300 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR 359
            NTALHVATRKKR EIV  LLSLPDTN N LTRDHKTALDIAEGLP SEE+S IK+CLAR
Sbjct: 300 CNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLAR 359

Query: 360 CGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNAT 419
            GA+RANELNQPRDELR TVTQIK DVH QLEQT+RTNKNVHNISKELRKLHREGINNAT
Sbjct: 360 SGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNAT 419

Query: 420 NSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQ 479
           NSVTVVAVLFATVAFA+IFTVPGGD+++G AVVV RASFKIFFIFNA+ALFTSLAVVVVQ
Sbjct: 420 NSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQ 479

Query: 480 ITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIM 539
           ITLVRGETKAEKRVVEVINKLMWLAS+CTSVAF+ASSYIVVGR++EWAA LVTVVGG+IM
Sbjct: 480 ITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELVTVVGGVIM 539

Query: 540 AGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL 591
           AGVLGTMTYYVVKSKR RS+RK+ K+AR RSGSNSW+ SD+SNSE+D I+A+
Sbjct: 540 AGVLGTMTYYVVKSKRTRSMRKKVKSAR-RSGSNSWHHSDFSNSEVDPIFAI 590

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15795155|dbj|BAB03143.1| ankyrin-like protein [Arabidopsis thaliana]

 Score =  949 bits (2452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/617 (78%), Positives = 534/617 (86%), Gaps = 31/617 (5%)

Query: 2    ASSIVEGAERDLEKG-IISPQLSQKSIGESSLTPSPSPSPS-SATAPALVLSNSGKRIDQ 59
            ASS V+G ERD+EKG +I  Q S+       + PSP+PSPS +ATAPALVLSNSGKR+DQ
Sbjct: 488  ASSYVDG-ERDMEKGGMILLQSSENQ--NPMIDPSPTPSPSATATAPALVLSNSGKRMDQ 544

Query: 60   AGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRS 119
            AGKKKYVKQVTGRHNDTELHLAAQRGDL AV+QIL  I+SQM G LSG EFD EVAEIR+
Sbjct: 545  AGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRA 604

Query: 120  SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 179
            S+VNEVNELGETALFTAADKGH++VV ELLKYS++E + +KNRSG+DPLHIAA+QGHHAI
Sbjct: 605  SIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAI 664

Query: 180  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 239
            V+VLLDHD +LSQT GPSNATPLVSAA RGHT VVN+LLSK G LLEISRSN KNALH A
Sbjct: 665  VEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLA 724

Query: 240  ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 299
            ARQGHV+V+KALLSKDPQLARR DKKGQTALHMAVKGQS EVVKLLL+AD AIVM PDK 
Sbjct: 725  ARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKS 784

Query: 300  GNTALHVATRKKRTE-------------------------IVTELLSLPDTNVNALTRDH 334
             NTALHVATRKKR E                         IV  LLSLPDTN N LTRDH
Sbjct: 785  CNTALHVATRKKRAEVCITLIVWFILRFLIGSSHFGIYLQIVELLLSLPDTNANTLTRDH 844

Query: 335  KTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTR 394
            KTALDIAEGLP SEE+S IK+CLAR GA+RANELNQPRDELR TVTQIK DVH QLEQT+
Sbjct: 845  KTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTK 904

Query: 395  RTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVR 454
            RTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGD+++G AVVV 
Sbjct: 905  RTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVG 964

Query: 455  RASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIA 514
            RASFKIFFIFNA+ALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLAS+CTSVAF+A
Sbjct: 965  RASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLA 1024

Query: 515  SSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNS 574
            SSYIVVGR++EWAA LVTVVGG+IMAGVLGTMTYYVVKSKR RS+RK+ K+AR RSGSNS
Sbjct: 1025 SSYIVVGRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKRTRSMRKKVKSAR-RSGSNS 1083

Query: 575  WYPSDYSNSEIDRIYAL 591
            W+ SD+SNSE+D I+A+
Sbjct: 1084 WHHSDFSNSEVDPIFAI 1100

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464198|ref|XP_004149816.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis sativus] gi|449518239|ref|XP_004166150.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis sativus]

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/590 (81%), Positives = 520/590 (88%), Gaps = 5/590 (0%)

Query: 2   ASSIVEGAERDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQAG 61
           A  +V+GA  DLEKGI+S   +Q  + E           S+ATAPALVLSNSGKR+DQAG
Sbjct: 6   AQVLVDGAG-DLEKGILSLSSNQNPLAE---LSPSPSPSSTATAPALVLSNSGKRMDQAG 61

Query: 62  KKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSV 121
           KKKYVKQVTGRHNDTELHLAAQRGDL AVKQIL  IDSQMV NLSGA+FD EVAE+RS V
Sbjct: 62  KKKYVKQVTGRHNDTELHLAAQRGDLAAVKQILDDIDSQMVRNLSGADFDAEVAEVRSLV 121

Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           VNEVNELGETALFTAA++GHIEVV ELLKYS KE LT KNRS FDPLHIAA QGHHAIVQ
Sbjct: 122 VNEVNELGETALFTAAERGHIEVVKELLKYSNKETLTTKNRSAFDPLHIAASQGHHAIVQ 181

Query: 182 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
           VLL+H+PSLSQT GPSNATPL++AA RGHTAVV ELL+KD  LLEI RSNGKNALHFA R
Sbjct: 182 VLLEHEPSLSQTFGPSNATPLITAAARGHTAVVEELLNKDRNLLEICRSNGKNALHFAVR 241

Query: 242 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 301
            GH ++VK LLSKDP LAR+ DKKGQTALHMAVKGQS +VVKLLLEAD AIVMLPDKFGN
Sbjct: 242 PGHTEIVKLLLSKDPHLARKNDKKGQTALHMAVKGQSRDVVKLLLEADPAIVMLPDKFGN 301

Query: 302 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG 361
           TALHVATRKKR EIV ELL LPDTNVNAL+RDHKTA DIAE LP SEE+SEIKD L+R G
Sbjct: 302 TALHVATRKKRVEIVQELLLLPDTNVNALSRDHKTAFDIAEELPLSEESSEIKDSLSRYG 361

Query: 362 AVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNS 421
           AVRANELNQPRDELR TVTQIKKDVHTQLEQTR+TNKNVHNISKELRKLHREGINNATNS
Sbjct: 362 AVRANELNQPRDELRNTVTQIKKDVHTQLEQTRKTNKNVHNISKELRKLHREGINNATNS 421

Query: 422 VTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQIT 481
           VTVVAVLFATVAFA+IFTVPGGD D G AVVV   SFKIFFIFNAIALFTSLAVVVVQIT
Sbjct: 422 VTVVAVLFATVAFAAIFTVPGGDTDQGTAVVVGTISFKIFFIFNAIALFTSLAVVVVQIT 481

Query: 482 LVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAG 541
           LVRGETKAE+RVVE+INKLMWLASVCTSVAF+ASSYIVVG ++ WAA ++TVVGG+IMAG
Sbjct: 482 LVRGETKAERRVVEIINKLMWLASVCTSVAFMASSYIVVGHKYRWAAAVITVVGGVIMAG 541

Query: 542 VLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL 591
           VLGTMTYYVVKSK  RS+RK+EK+ R RSGSNSW+ SD+SNSE+DRIYAL
Sbjct: 542 VLGTMTYYVVKSKSRRSVRKKEKSNR-RSGSNSWHHSDFSNSEVDRIYAL 590

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448809|ref|XP_002282204.1| PREDICTED: ankyrin repeat-containing protein At3g12360 [Vitis vinifera] gi|297736432|emb|CBI25303.3| unnamed protein product [Vitis vinifera]

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/593 (80%), Positives = 524/593 (88%), Gaps = 6/593 (1%)

Query: 1   MASSIV--EGAERDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRID 58
           MAS +   E  ERDLEKG+++P  +Q      +         S+A+APALVLS+S KRID
Sbjct: 1   MASPVTVKEEMERDLEKGLVTPAPNQNP---LAEPSPSPSPSSTASAPALVLSSSSKRID 57

Query: 59  QAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIR 118
           QAGKKKYVKQVTGRHNDTELHLAAQRGDL AVKQIL  I SQ+   +SGAEF+ EVAE+R
Sbjct: 58  QAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVKQILDDIHSQIGDTMSGAEFEAEVAEVR 117

Query: 119 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA 178
           + +VNEVNELGETALFTAA+KGHI+VV ELLKYS +E ++RKNRS F PLHIAA QGHHA
Sbjct: 118 TLMVNEVNELGETALFTAAEKGHIDVVKELLKYSNRESISRKNRSQFGPLHIAAAQGHHA 177

Query: 179 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 238
           IVQVLLD+DP LS+T GPSNATPLVSAA+RGHTAVV ELLSKD GLLEI++SNGKNALH 
Sbjct: 178 IVQVLLDYDPELSKTIGPSNATPLVSAASRGHTAVVIELLSKDCGLLEIAKSNGKNALHL 237

Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AARQGHVD+V+ALL KDPQLARRTDKKGQTALHMAVKG SCEVVKLLL ADAAIVMLPDK
Sbjct: 238 AARQGHVDIVEALLEKDPQLARRTDKKGQTALHMAVKGVSCEVVKLLLNADAAIVMLPDK 297

Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 358
            GNTALHVATRKKR EIV ELL LPD NVNAL RDHKT+LDIAE L  SEEASEIKDCL 
Sbjct: 298 QGNTALHVATRKKRAEIVNELLRLPDANVNALNRDHKTSLDIAEDLSHSEEASEIKDCLI 357

Query: 359 RCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNA 418
           R GA++ANELNQPRDELR TVTQIK+DVHTQLEQTRRTNKNVHNISKELRKLHREGINNA
Sbjct: 358 RYGAIKANELNQPRDELRNTVTQIKRDVHTQLEQTRRTNKNVHNISKELRKLHREGINNA 417

Query: 419 TNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVV 478
           TNSVTVVAVLFATVAFA+IFTVPGGD+ +G  VVV+ ASFKIFFIFNA+ALFTSLAVVVV
Sbjct: 418 TNSVTVVAVLFATVAFAAIFTVPGGDNPDGTGVVVKSASFKIFFIFNALALFTSLAVVVV 477

Query: 479 QITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLI 538
           QITLVRGETKAE+ VV VINKLMWLASVCTSVAFIASSYIVVGR +EWAAI VTVVGG+I
Sbjct: 478 QITLVRGETKAERNVVVVINKLMWLASVCTSVAFIASSYIVVGRHNEWAAIFVTVVGGVI 537

Query: 539 MAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL 591
           MAGVLGTMTYYVVKSKR+RS+R+++KNAR RSGSNSW+ S++S+SEIDRIYAL
Sbjct: 538 MAGVLGTMTYYVVKSKRIRSVRRKDKNAR-RSGSNSWHHSEFSDSEIDRIYAL 589

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576855|ref|XP_003556545.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max]

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/548 (83%), Positives = 506/548 (92%), Gaps = 4/548 (0%)

Query: 48  LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSG 107
           LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGD+GAV+QIL  +DSQ++  LSG
Sbjct: 38  LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILEDVDSQIMRTLSG 97

Query: 108 AEFDT----EVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRS 163
            + D     E+AE+R+ +VNE NE GET LFTAA+KGH++VV ELL YS  + +++KNRS
Sbjct: 98  GDDDVDLNAEIAEVRACLVNEENEPGETPLFTAAEKGHLDVVKELLNYSNAQTVSKKNRS 157

Query: 164 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 223
           GFDPLHIAA QGHH+IVQVLLD++P LS+T GPSN+TPL++AATRGHT VVNELLSKD  
Sbjct: 158 GFDPLHIAASQGHHSIVQVLLDYNPGLSKTIGPSNSTPLITAATRGHTEVVNELLSKDCS 217

Query: 224 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 283
           LLEI+RSNGKNALH AARQGHV++VKALLSKDPQLARRTDKKGQTALHMAVKGQSC+VVK
Sbjct: 218 LLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVK 277

Query: 284 LLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 343
           LLLEADAAIVMLPDKFGNTALHVATRKKR EIV ELL LPDTNVNALTRDHKTALDIAE 
Sbjct: 278 LLLEADAAIVMLPDKFGNTALHVATRKKRVEIVNELLHLPDTNVNALTRDHKTALDIAEN 337

Query: 344 LPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNI 403
           LP SEEAS+IKDCL+R GA+RANELNQPRDELRKTVTQIKKDVHTQLEQT+RTNKNVHNI
Sbjct: 338 LPLSEEASDIKDCLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNI 397

Query: 404 SKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFI 463
           SKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGDDD+G AVV   A+FKIFF+
Sbjct: 398 SKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDDDDGSAVVAAYAAFKIFFV 457

Query: 464 FNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRR 523
           FNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGR+
Sbjct: 458 FNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRK 517

Query: 524 HEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNS 583
           ++WAAILVT+VGG+I++GV+GTMTYYVV+SKR RS+RK+EK A  RSGSNSW+ S++SNS
Sbjct: 518 NKWAAILVTLVGGVIISGVIGTMTYYVVRSKRSRSMRKKEKQAARRSGSNSWHHSEFSNS 577

Query: 584 EIDRIYAL 591
           E+DRIYAL
Sbjct: 578 EVDRIYAL 585

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|128168562|dbj|BAF48666.1| IGN1 [Lotus japonicus] gi|128168568|dbj|BAF48667.1| IGN1 [Lotus japonicus]

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/588 (78%), Positives = 516/588 (87%), Gaps = 21/588 (3%)

Query: 22  LSQKSIGESSLTPSPSPSPSS----------ATAPALVLSNSGKRIDQAGKKKYVKQVTG 71
           L Q+ I +     +P  +P S          +TAPALVLSNSGKRIDQAGKKKYVKQVTG
Sbjct: 12  LGQRDIEKEKAAMTPPQTPLSEISPSPSPSSSTAPALVLSNSGKRIDQAGKKKYVKQVTG 71

Query: 72  RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGN--------LSGAEFDTEVAEIRSSVVN 123
           RHNDTELHLAAQRGD+GAV+QIL  IDSQ++G             + ++E+AE+R+ VVN
Sbjct: 72  RHNDTELHLAAQRGDVGAVRQILLDIDSQIMGTHGGGGGGDGDVVDLNSEIAEVRACVVN 131

Query: 124 EVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVL 183
           E NELGETALFTAA++GH++VV ELLK+S    L +KNRSGFDPLHIAA QGHHAIVQVL
Sbjct: 132 EENELGETALFTAAERGHLDVVKELLKHSN---LKKKNRSGFDPLHIAASQGHHAIVQVL 188

Query: 184 LDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 243
           LD+DP LS+T GPSNATPL++AATRGH  VVNELLSKD  LLEI+RSNGK+ LH AARQG
Sbjct: 189 LDYDPGLSKTIGPSNATPLITAATRGHVEVVNELLSKDCSLLEIARSNGKSPLHLAARQG 248

Query: 244 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA 303
           HV++V+ALLSKDPQLARRTDKKGQTALHMAVKGQS +VVKLLL+ADAAIVMLPDKFGNTA
Sbjct: 249 HVEIVRALLSKDPQLARRTDKKGQTALHMAVKGQSADVVKLLLDADAAIVMLPDKFGNTA 308

Query: 304 LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV 363
           LHVATRKKR EIV ELL+LPDTNVNALTRDHKTALDIAE LP SEEAS+IKDCL+R GA+
Sbjct: 309 LHVATRKKRVEIVNELLNLPDTNVNALTRDHKTALDIAENLPLSEEASDIKDCLSRYGAL 368

Query: 364 RANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVT 423
           RANELNQPRDELRKTVTQIKKDVHTQLEQT+RTNKNVHNISKELRKLHREGINNATNSVT
Sbjct: 369 RANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVT 428

Query: 424 VVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLV 483
           VVAVLFATVAFA+IFTVPGGD+D+G  VV   ++FKIFFIFNAIALFTSLAVVVVQITLV
Sbjct: 429 VVAVLFATVAFAAIFTVPGGDNDDGSGVVAAYSAFKIFFIFNAIALFTSLAVVVVQITLV 488

Query: 484 RGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVL 543
           RGETKAEKRVVEVINKLMWLASVCTSVAFIA+SYIVVGR++EWAAILVTVVGG+I++GV+
Sbjct: 489 RGETKAEKRVVEVINKLMWLASVCTSVAFIAASYIVVGRKNEWAAILVTVVGGVIISGVI 548

Query: 544 GTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL 591
           GTMTYYVV+SKR RS+RK+EK    RSGSNSW+ S++SNSE+D IYAL
Sbjct: 549 GTMTYYVVRSKRSRSMRKKEKQQARRSGSNSWHHSEFSNSEVDPIYAL 596

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439834|ref|XP_002277535.1| PREDICTED: ankyrin repeat-containing protein At3g12360 [Vitis vinifera] gi|297741528|emb|CBI32660.3| unnamed protein product [Vitis vinifera]

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/635 (74%), Positives = 521/635 (82%), Gaps = 52/635 (8%)

Query: 7   EGAERDLEKGIISPQ-----------------------------------LSQKSIGESS 31
           EG ERDLEKG   PQ                                    S K++G S+
Sbjct: 6   EGDERDLEKGEARPQNLSHLNDPSPLPSPSAATSGPALVLSNSGKALGISASSKALGASA 65

Query: 32  LTPSPSPSPSSA---------------TAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDT 76
            + +   SPSS                +  +LVLSNSGKRIDQAGKKKYVKQVTGRHNDT
Sbjct: 66  SSKALGVSPSSKALVLSNSGKALVLSNSGKSLVLSNSGKRIDQAGKKKYVKQVTGRHNDT 125

Query: 77  ELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTA 136
           ELHLAA RGDL AVKQIL  ID+QM G LSGA+FD EVAEIR++VV+EVNELGETALFTA
Sbjct: 126 ELHLAAARGDLEAVKQILGEIDAQMTGTLSGADFDAEVAEIRAAVVDEVNELGETALFTA 185

Query: 137 ADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGP 196
           A+KGH++VV ELL+YSTKEG+  KN+SGFD LHIAA +GH  IV+VLLD+DP LS+T G 
Sbjct: 186 AEKGHLDVVKELLQYSTKEGIAMKNQSGFDALHIAASKGHQVIVEVLLDYDPELSKTVGQ 245

Query: 197 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP 256
           SNATPL+SAATRGH AVVN LLSKD GLLEIS+SNGKNALH AARQGHVD+VKALL KDP
Sbjct: 246 SNATPLISAATRGHLAVVNNLLSKDSGLLEISKSNGKNALHLAARQGHVDIVKALLDKDP 305

Query: 257 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 316
           QLARRTDKKGQTALHMAVKG S EVVKLLL+ADAAIVMLPDKFGNTALHVATRKKR EIV
Sbjct: 306 QLARRTDKKGQTALHMAVKGVSREVVKLLLDADAAIVMLPDKFGNTALHVATRKKRAEIV 365

Query: 317 TELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELR 376
            ELL LPDTNVNALTRDHKTALDIAEGLP SEE SEI+DCLAR GAV+ANELNQPRDELR
Sbjct: 366 NELLLLPDTNVNALTRDHKTALDIAEGLPLSEETSEIRDCLARYGAVKANELNQPRDELR 425

Query: 377 KTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAS 436
           KTVT+IKKDVHTQLEQTR+TNKNV  I+KELRKLHREGINNATNSVTVVAVLFATVAFA+
Sbjct: 426 KTVTEIKKDVHTQLEQTRKTNKNVSGIAKELRKLHREGINNATNSVTVVAVLFATVAFAA 485

Query: 437 IFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEV 496
           IFTVPGGD+D G AVVV   SFKIFFIFNAIALFTSLAVVVVQITLVRGETK+E+RVVEV
Sbjct: 486 IFTVPGGDNDLGVAVVVDSPSFKIFFIFNAIALFTSLAVVVVQITLVRGETKSERRVVEV 545

Query: 497 INKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRV 556
           INKLMWLASVCTSVAFIASSYIVVGR + WAAILVTV+GG+ MAGVLGTMTYYVVKSKR 
Sbjct: 546 INKLMWLASVCTSVAFIASSYIVVGRHNRWAAILVTVIGGVTMAGVLGTMTYYVVKSKRT 605

Query: 557 RSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL 591
           R +RK+EK+  +RSG+ SW  SD S+SE++ IYA+
Sbjct: 606 RLLRKKEKH--LRSGTTSWRHSDLSDSEVNPIYAI 638

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536512|ref|XP_003536781.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max]

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/548 (82%), Positives = 502/548 (91%), Gaps = 4/548 (0%)

Query: 48  LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSG 107
           LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGD+GAV+QIL  +DSQ++G LSG
Sbjct: 45  LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILEDVDSQIMGTLSG 104

Query: 108 A----EFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRS 163
                + + E+AE+R+ + NE NELGET LFTAA+KGH++VV ELL YST + +++KNRS
Sbjct: 105 DGDEDDLNAEIAEVRACLANEENELGETPLFTAAEKGHLDVVKELLNYSTAQTVSKKNRS 164

Query: 164 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 223
           GFDPLHIAA QGHH IVQVLLD+D  LS+T GPSN+TPL++AATRGHT VVNELLSKD  
Sbjct: 165 GFDPLHIAASQGHHPIVQVLLDYDSGLSKTIGPSNSTPLITAATRGHTEVVNELLSKDCS 224

Query: 224 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 283
           LLEI+RSNGKNALH AARQGHV++VKALLSKDPQLARRTDKKGQTALHMAVKGQSC+VVK
Sbjct: 225 LLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVK 284

Query: 284 LLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 343
           LLLEADAAIVMLPDKFGNTALHVATRKKR EIV ELL LPDTNVNALTRDHKTALDIAE 
Sbjct: 285 LLLEADAAIVMLPDKFGNTALHVATRKKRVEIVNELLHLPDTNVNALTRDHKTALDIAED 344

Query: 344 LPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNI 403
           LP SEEAS+IKDCL+R GA+RANELNQPRDELRKTVTQIKKDVHTQLEQT+RTNKNVHNI
Sbjct: 345 LPLSEEASDIKDCLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNI 404

Query: 404 SKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFI 463
           SKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGD ++G AVV   A+FKIFF+
Sbjct: 405 SKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDHNDGSAVVAAYAAFKIFFV 464

Query: 464 FNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRR 523
           FNAIALFTSLAVVVVQITLVRGETKAEKRVV VINKLMWLASVCTSV FIA+SYIVVG++
Sbjct: 465 FNAIALFTSLAVVVVQITLVRGETKAEKRVVVVINKLMWLASVCTSVTFIAASYIVVGKK 524

Query: 524 HEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNS 583
           +EWAAILVT+VGG+I++GV+GTMTYYVV+SKR RS+RK+EK A  RSGSNSW+ S++SNS
Sbjct: 525 NEWAAILVTLVGGVIISGVIGTMTYYVVRSKRSRSMRKKEKQAARRSGSNSWHHSEFSNS 584

Query: 584 EIDRIYAL 591
           E+D IYAL
Sbjct: 585 EVDPIYAL 592

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	591
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.994	0.996	0.740	3.3e-221
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.912	0.887	0.709	4.7e-199
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.820	0.732	0.421	2.9e-99
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.868	0.944	0.417	3.8e-94
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.866	0.816	0.414	5.5e-93
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.830	0.922	0.389	2.4e-85
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.798	0.900	0.400	2.7e-84
UNIPROTKB|Q7Z6G8	1248	ANKS1B "Ankyrin repeat and ste	0.539	0.255	0.313	8.3e-23
TAIR|locus:2012873	578	AT1G10340 "AT1G10340" [Arabido	0.742	0.759	0.224	1.9e-21
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.411	0.394	0.290	2.8e-21

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 2136 (757.0 bits), Expect = 3.3e-221, P = 3.3e-221
 Identities = 437/590 (74%), Positives = 481/590 (81%)

Query:     2 ASSIVEGAERDLEKGIISPQLSQKSIGEXXXXXXXXXXXXXXXXXXXXXXNSGKRIDQAG 61
             ASS V+G ERD+EKG +    S ++                         NSGKR+DQAG
Sbjct:     3 ASSYVDG-ERDMEKGGMILLQSSENQNPMIDPSPTPSPSATATAPALVLSNSGKRMDQAG 61

Query:    62 KKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSV 121
             KKKYVKQVTGRHNDTELHLAAQRGDL AV+QIL  I+SQM G LSG EFD EVAEIR+S+
Sbjct:    62 KKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASI 121

Query:   122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
             VNEVNELGETALFTAADKGH++VV ELLKYS++E + +KNRSG+DPLHIAA+QGHHAIV+
Sbjct:   122 VNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVE 181

Query:   182 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
             VLLDHD +LSQT GPSNATPLVSAA RGHT VVN+LLSK G LLEISRSN KNALH AAR
Sbjct:   182 VLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAAR 241

Query:   242 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 301
             QGHV+V+KALLSKDPQLARR DKKGQTALHMAVKGQS EVVKLLL+AD AIVM PDK  N
Sbjct:   242 QGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCN 301

Query:   302 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG 361
             TALHVATRKKR EIV  LLSLPDTN N LTRDHKTALDIAEGLP SEE+S IK+CLAR G
Sbjct:   302 TALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSG 361

Query:   362 AVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXX 421
             A+RANELNQPRDELR TVTQIK DVH QLEQT+RTNKNVHNISKELRKLHREGI      
Sbjct:   362 ALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNS 421

Query:   422 XXXXXXXXXXXXXXSIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQIT 481
                           +IFTVPGGD+++G AVVV RASFKIFFIFNA+ALFTSLAVVVVQIT
Sbjct:   422 VTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQIT 481

Query:   482 LVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAG 541
             LVRGETKAEKRVVEVINKLMWLAS+CTSVAF+ASSYIVVGR++EWAA LVTVVGG+IMAG
Sbjct:   482 LVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELVTVVGGVIMAG 541

Query:   542 VLGTMTYYXXXXXXXXXXXXXXXNARMRSGSNSWYPSDYSNSEIDRIYAL 591
             VLGTMTYY               +AR RSGSNSW+ SD+SNSE+D I+A+
Sbjct:   542 VLGTMTYYVVKSKRTRSMRKKVKSAR-RSGSNSWHHSDFSNSEVDPIFAI 590

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 1927 (683.4 bits), Expect = 4.7e-199, P = 4.7e-199
 Identities = 385/543 (70%), Positives = 440/543 (81%)

Query:    52 NSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFD 111
             NSGKR D  GKKKYVKQVTGRHNDTELHLAAQRGDL +VKQIL  IDSQ+ G ++GA+FD
Sbjct:    66 NSGKRFDPTGKKKYVKQVTGRHNDTELHLAAQRGDLASVKQILSDIDSQITGTITGADFD 125

Query:   112 TEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIA 171
              EVA+I +SVVNEVNELGET LFTAA+KG+I+VV ELL Y+T E L +KN SGFD LHIA
Sbjct:   126 DEVAQIMTSVVNEVNELGETPLFTAAEKGNIDVVKELLPYTTIESLMQKNLSGFDALHIA 185

Query:   172 AVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN 231
               QGH +IVQ+LL+H+P LS+T   SNATPLVSAATRGH+ VVNELL+KD  LLEISRSN
Sbjct:   186 CSQGHRSIVQLLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEISRSN 245

Query:   232 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 291
             GKNALH AARQGHVD+V+ LL KDPQLARRTDKKGQT+LHMAVKG S +VV+LLL AD A
Sbjct:   246 GKNALHLAARQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRADPA 305

Query:   292 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEAS 351
             IVMLPDKFGNT LH+ATRKKR EIV ELL LPDTNVNALTRDHKTA DIAEGL  SEE +
Sbjct:   306 IVMLPDKFGNTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAEGLTHSEETA 365

Query:   352 EIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLH 411
             EIK+ L+RCGA++ANELNQPRDELRKTVT+IKKDVHTQLEQTR+TNKNV  I+KELRKLH
Sbjct:   366 EIKEILSRCGALKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAKELRKLH 425

Query:   412 REGIXXXXXXXXXXXXXXXXXXXXSIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFT 471
             R GI                    +IFTVPGGDDD+G AV+V   SFKIFFIFNAIALFT
Sbjct:   426 RAGINNATNSVTVVAVLFATVAFAAIFTVPGGDDDHGVAVMVHATSFKIFFIFNAIALFT 485

Query:   472 SLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILV 531
             SLAVVVVQITLVRGETK E+RVVEVINKLMWLASVCT+VAFI+SSYIVVGRR+ +AA++V
Sbjct:   486 SLAVVVVQITLVRGETKTERRVVEVINKLMWLASVCTTVAFISSSYIVVGRRNRYAAVVV 545

Query:   532 TVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXXNARMRSGSNSWY---PSDYSNSEIDRI 588
             TV+G + M G+L  MTYY                   R+G++SW+   PS+ + SE++ I
Sbjct:   546 TVIGTVTMTGILSIMTYYVVKSKRTRIVRKKEKKKSARNGTSSWHHANPSE-TESEVNPI 604

Query:   589 YAL 591
             YA+
Sbjct:   605 YAI 607

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 927 (331.4 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
 Identities = 213/505 (42%), Positives = 305/505 (60%)

Query:   103 GNLSGA-EFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKN 161
             GNLS   E      +    ++++ N  GET L+TAA+ GH  VV E+LK+   E  +   
Sbjct:   162 GNLSKVKELIRGCGDELKELLSKQNLEGETPLYTAAENGHSIVVEEMLKHMDLETASIAA 221

Query:   162 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 221
             R+GFDP H+AA QGH  ++++LL+  P+L+ TT  S  T L +AAT+GH  VVN LL  D
Sbjct:   222 RNGFDPFHVAAKQGHLEVLKILLETFPNLAMTTDLSCTTALHTAATQGHIDVVNLLLETD 281

Query:   222 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 281
               L +I+++NGK ALH AAR GHV+VVK+L+ KDP +  RTDKKGQTALHMAVKGQ+  +
Sbjct:   282 SNLAKIAKNNGKTALHSAARMGHVEVVKSLIGKDPSIGFRTDKKGQTALHMAVKGQNDGI 341

Query:   282 VKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
             V  L++ D A++ + D  GNT LH+AT K R +IV  L+S    N+N + +   T LD++
Sbjct:   342 VVELVKPDVAVLSVEDNKGNTPLHIATNKGRIKIVRCLVSFEGINLNPINKAGDTPLDVS 401

Query:   342 EGLPSSEEASEIKDCLARCGAVRANELNQPRD---ELRKTVTQIKKDVHTQLEQTRRTNK 398
             E + ++E  S +K+     GA  A +L +P++   +L++TV+ IK +V +QL+Q+R+T  
Sbjct:   402 EKIGNAELVSVLKEA----GAATAKDLGKPQNPAKQLKQTVSDIKHEVQSQLQQSRQTGV 457

Query:   399 NVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXSIFTVPGG-DDDN------GKAV 451
              V  I+K L+KLH  G+                    +IFT+PG  ++D       G+A 
Sbjct:   458 RVQKIAKRLKKLHISGLNNAINSATVVAVLIATVAFAAIFTIPGQYEEDRSKGELLGQAH 517

Query:   452 VVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVA 511
             +  +A F +FFIF+++ALF SLAVVVVQ ++V  E KA+K++V VINKLMW A +  S+A
Sbjct:   518 IANKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQKAKKKLVFVINKLMWCACLFISIA 577

Query:   512 FIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXXNARMRSG 571
             F++ SYIVVG+   W A+  TV+GG IM   +G M Y                  R +S 
Sbjct:   578 FVSLSYIVVGKEEMWLAVCATVIGGTIMLTTIGAMCYCVVMHRMEESKLRSIRKERSKSQ 637

Query:   572 SNSW--YPSDYS--NSEID-RIYAL 591
             S S    PSD    N E + R+YAL
Sbjct:   638 SFSMSRMPSDSDILNGEYNKRMYAL 662

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 228/546 (41%), Positives = 319/546 (58%)

Query:    62 KKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSV 121
             KKK +KQ+TG+ +DT LH A + G+   V +IL                 T  +E+ + +
Sbjct:    15 KKKMMKQLTGKRDDTLLHSAVRHGNKDRVVEILT---------------KTRESEL-NQL 58

Query:   122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
             + + N+ GETAL+ AA+ G +E+V E++       +  K R+GFD  HIAA QG   +++
Sbjct:    59 LGKQNQSGETALYVAAEYGDVEIVKEMINCYDLALVEIKARNGFDAFHIAAKQGDLDVLK 118

Query:   182 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
             VL +    L+ T   SN T L +AAT+GHT VVN LL     L  I++SNGK ALH A+R
Sbjct:   119 VLAEAHSELAMTVDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSASR 178

Query:   242 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 301
              GHV V+KALL+ +P +A R DKKGQTALHMAVKG + EVV+ L++AD + + + D  GN
Sbjct:   179 NGHVKVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKADRSSINIADTKGN 238

Query:   302 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEI-KDCLARC 360
             TALH+A RK R++IV  LL+   T+  A+ R  +TALD AE + + E A  + K  +   
Sbjct:   239 TALHIAARKGRSQIVKLLLANNMTDTKAVNRSGETALDTAEKIGNPEVALILQKHGVPSA 298

Query:   361 GAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXX 420
               ++ +  N P  EL++TV+ IK +VH QLE TR T K V  I+K+L K+H EG+     
Sbjct:   299 KTIKPSGPN-PARELKQTVSDIKHEVHNQLEHTRLTRKRVQGIAKQLNKMHTEGLNNAIN 357

Query:   421 XXXXXXXXXXXXXXXSIFTVPGG--DDDN--------GKAVVVRRASFKIFFIFNAIALF 470
                            +IFTVPG   +D +        G+A +     F IFFIF++IALF
Sbjct:   358 STTVVAVLIATVAFAAIFTVPGQYVEDTSKIPDGHSLGEANIASTTPFIIFFIFDSIALF 417

Query:   471 TSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAIL 530
              SLAVVVVQ ++V  E+KA+K+++ VINKLMWLA V  SVAF+A S++VVG   +W AI 
Sbjct:   418 ISLAVVVVQTSVVVIESKAKKQMMAVINKLMWLACVLISVAFLALSFVVVGEEEKWLAIW 477

Query:   531 VTVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXXNARMRSGSNSW-YP----SDYSNSEI 585
             VT +G  IM   LGTM Y+                + + S S SW  P    SD   +E 
Sbjct:   478 VTAIGATIMITTLGTMCYWIIQHKIEAANLRNIRRSSINSISGSWGIPQLTDSDILQNEC 537

Query:   586 DRIYAL 591
              ++YA+
Sbjct:   538 KKMYAI 543

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 227/547 (41%), Positives = 321/547 (58%)

Query:    61 GKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSS 120
             G++K      G+  D+ LHLAA+ G+LG V +++   +        G E   E+ E+ S 
Sbjct:   100 GERKKKTDSPGKRGDSPLHLAARTGNLGKVMELIRACN--------GIE---ELKELSS- 147

Query:   121 VVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIV 180
                + N  GET L++AA+ GH  VV E+LK+   +  + K R+GFDP H+AA QGH   +
Sbjct:   148 ---KQNLEGETPLYSAAENGHSLVVEEMLKHMDLDTASVKARNGFDPFHVAAKQGHIEAL 204

Query:   181 QVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 240
             + LL+  P+L+ T   S  T L +AA++GHT VVN LL  D  L +I+++NGK ALH AA
Sbjct:   205 KKLLETFPNLAMTVDLSCTTALHTAASQGHTDVVNLLLKTDSHLAKIAKNNGKTALHSAA 264

Query:   241 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG 300
             R GH +VVK+L+  D  +  RTDKKGQTALHMAVKGQ+  +V  L++ D AI+ + D  G
Sbjct:   265 RMGHREVVKSLIGNDASIGFRTDKKGQTALHMAVKGQNEGIVLELVKPDPAILSVEDSKG 324

Query:   301 NTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARC 360
             NT LH AT K R +IV  L+S    N+NA+ +   TALDIAE + + E  S +K+     
Sbjct:   325 NTPLHTATNKGRIKIVRCLVSFDGINLNAMNKAGDTALDIAEKIGNPELVSVLKEA---- 380

Query:   361 GAVRANELNQPRD---ELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXX 417
             GA  A +L +PR+   +L +TV+ IK +V +QL+Q+R+T   V  I+K L+KLH  G+  
Sbjct:   381 GAATAKDLGKPRNPAKQLNQTVSDIKHEVQSQLQQSRQTGVRVRRIAKRLKKLHINGLNN 440

Query:   418 XXXXXXXXXXXXXXXXXXSIFTVPGG-DDDN-------GKAVVVRRASFKIFFIFNAIAL 469
                               +IFT+PG  ++D        G+A +  +A F +FFIF+++AL
Sbjct:   441 AINSATVVAVLIATVAFAAIFTIPGQYEEDRTKGLLLLGEARIAGKAPFLVFFIFDSLAL 500

Query:   470 FTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAI 529
             F SLAVVVVQ ++V  E KA+K +V VINKLMWLA +  SVAF++ S+IVVG+   W AI
Sbjct:   501 FISLAVVVVQTSVVVIEQKAKKNLVFVINKLMWLACLFISVAFVSLSFIVVGKEDIWLAI 560

Query:   530 LVTVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXXNARMRSGSNSW--YPSDYS--NSEI 585
               T++GG IM   +G M Y                  R +S S S    PS+    N E 
Sbjct:   561 CATIIGGTIMLTTIGAMCYCVVMHRIEESKLKSLRKERSKSKSFSLSHMPSESEILNGEF 620

Query:   586 D-RIYAL 591
             + R+YAL
Sbjct:   621 NKRMYAL 627

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 197/506 (38%), Positives = 293/506 (57%)

Query:   100 QMVGNLSGAEFDTEVAEIRS--SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGL 157
             Q+V NL+G E   E +   +   +++  N+ GETA++ +A +   ++   L+++S+ E +
Sbjct:    28 QLVDNLTGDELIDESSPCSAVAELMSVQNDAGETAVYISAAENLEDIFRYLIRFSSLETV 87

Query:   158 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 217
               +++S  +  H+AA +GH  IV+ LL   P L +    SN +PL +AA + H  +VN +
Sbjct:    88 KIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAM 147

Query:   218 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 277
             L  D     I R NGK +LH A R G + +VKAL+ KD  +    DKKGQTALHMAVKG+
Sbjct:   148 LDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGR 207

Query:   278 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 337
             S EVV+ +L+AD  I+   D+ GNTALH+ATRK R +I + LL+     VNA+    +TA
Sbjct:   208 SLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETA 267

Query:   338 LDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDE---LRKTVTQIKKDVHTQLEQTR 394
             +D+A+ L  SE A EI + L   GA     + +  DE   L++ V+ IK +V +QL Q  
Sbjct:   268 MDLADKLQYSESALEINEALVEAGAKHGRFIGR-EDEARALKRAVSDIKHEVQSQLLQNE 326

Query:   395 RTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXSIFTVPGG---DDDN-GKA 450
             +TN+ V  I+KELRKLHRE +                    +IF +PG    +  + G+A
Sbjct:   327 KTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQA 386

Query:   451 VVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSV 510
              +  R  F++F + NA +LF SLAVVVVQITLV  +T+A+K+VV V+NKLMW A  CT  
Sbjct:   387 NIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAACACTFG 446

Query:   511 AFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXXNARMRS 570
             AF+A ++ VVG+ + W AI +T++G  I+ G L +M Y+                 R  S
Sbjct:   447 AFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFVFRQRFRSGNDSQRRIRRGSS 506

Query:   571 GSNSW----YPSDYSN-SEIDRIYAL 591
              S SW    + SD+ + S+ ++I AL
Sbjct:   507 KSFSWSYSHHVSDFEDESDFEKIIAL 532

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
 Identities = 201/502 (40%), Positives = 286/502 (56%)

Query:    62 KKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSV 121
             KK   KQ+T R +DT LH A + G       +L     +M+G   G E    +AE     
Sbjct:     5 KKTMTKQMTARRDDTPLHTAVREGKT----DLLL----EMIGEHDGVELKELLAE----- 51

Query:   122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
                 N+ GETAL+ AA+ G+ ++V  L+K+S       K ++GFD  HIAA  G+  ++ 
Sbjct:    52 ---QNQSGETALYVAAEYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLD 108

Query:   182 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
             VL++ +P LS T   S  T L +AA++GH  +V  LL K   L  I+RSNGK ALH AAR
Sbjct:   109 VLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAAR 168

Query:   242 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 301
              GH  +VK L+ K   +  R DKKGQTALHMAVKGQ+ E+V +L+EAD +++   D  GN
Sbjct:   169 NGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGN 228

Query:   302 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDC-LARC 360
             T LH+A RK R EIV  +L   + +  A+ +  +TALDIAE     E    ++   +   
Sbjct:   229 TPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNA 288

Query:   361 GAVRANELNQPRDELRK---TVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXX 417
              +++  E  +P    RK   TV++I  +VHTQLEQT RT + +  I+K + K+H EG+  
Sbjct:   289 RSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNN 348

Query:   418 XXXXXXXXXXXXXXXXXXSIFTVPGG--DDDN--------GKAVVVRRASFKIFFIFNAI 467
                               +IF VPG   DD          G+A    R  F IF +F++ 
Sbjct:   349 AINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSF 408

Query:   468 ALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWA 527
             ALF SLAVVVVQ ++V  E +A+K+++ +INKLMW+A +  SVAF++ S++VVG + +  
Sbjct:   409 ALFISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPL 468

Query:   528 AILVTVVGGLIMAGVLGTMTYY 549
             A+ VT +G LIM   LGTM Y+
Sbjct:   469 AVGVTAIGALIMVSTLGTMCYW 490

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q7Z6G8 ANKS1B "Ankyrin repeat and sterile alpha motif domain-containing protein 1B" [Homo sapiens (taxid:9606)]

 Score = 297 (109.6 bits), Expect = 8.3e-23, P = 8.3e-23
 Identities = 108/345 (31%), Positives = 170/345 (49%)

Query:    75 DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEI-RSSVVNEVNELGETAL 133
             D EL  AA+ G++  V+++L G    ++G  SG    + +  I R   VN  +  G TAL
Sbjct:     4 DQELLEAARTGNVALVEKLLSGRKGGILGGGSGPLPLSNLLSIWRGPNVNCTDSSGYTAL 63

Query:   134 FTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT 193
               AA  GH ++V +LL+Y     +   +  G+ P+H+AA +G   IV++L+ H PS S+ 
Sbjct:    64 HHAALNGHKDIVLKLLQYEASTNVA--DNKGYFPIHLAAWKGDVEIVKILIHHGPSHSRV 121

Query:   194 TGPSNA--TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGK--NALHFAARQGHVDVVK 249
                +N   T L  AA  GH+ VV  LL +   L + +  N K    L  AA  G + VVK
Sbjct:   122 NEQNNENETALHCAAQYGHSEVVAVLLEE---LTDPTIRNSKLETPLDLAALYGRLRVVK 178

Query:   250 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR 309
              ++S  P L     +K  T LH+A +     VV++LLEA   +    +K   +ALH A  
Sbjct:   179 MIISAHPNLMSCNTRK-HTPLHLAARNGHKAVVQVLLEAGMDVSCQTEK--GSALHEAAL 235

Query:   310 KKRTEIVTELLSLPDTNVNALTRDH--KTALDIAEGLPSSEEASEIKDCLARC--GAVRA 365
               + ++V  LL   +T ++A  +D   +T LDI +  PS +++ +I   L     G  R+
Sbjct:   236 FGKVDVVRVLL---ETGIDANIKDSLGRTVLDILKEHPS-QKSLQIATLLQEYLEGVGRS 291

Query:   366 NELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKL 410
               L +P  E     T I   V +  ++T+        ++ EL KL
Sbjct:   292 TVLEEPVQEDATQETHISSPVESPSQKTKS-----ETVTGELSKL 331

GO:0005886 "plasma membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IPI

TAIR|locus:2012873 AT1G10340 "AT1G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 110/489 (22%), Positives = 212/489 (43%)

Query:    73 HNDTELHLAAQRGDLGAVKQILY-GID---SQMVGNLSGAEFDTEVAEIRSS--VVNEVN 126
             + +T LHLAA  GD+  V Q+L  G++   ++ + N +          I ++  +  +  
Sbjct:    70 YRNTPLHLAAILGDVNIVMQMLETGLEVCSARNINNHTPLHLACRSNSIEAARLIAEKTQ 129

Query:   127 ELGETALFTAADKGHIEVVNELLK----YSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQV 182
              +G   L  A   G   +V  +L+     + +E    ++ S    LH A  +G   +  +
Sbjct:   130 SIGLGELILAISSGSTSIVGTILERFPDLAREEAWVVEDGSQSTLLHHACDKGDFELTTI 189

Query:   183 LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 242
             LL  D  L +   P+  +PL  A  RG   ++ E L K          + +   H AAR 
Sbjct:   190 LLGLDQGLEEALNPNGLSPLHLAVLRGSVVILEEFLDKVPLSFSSITPSKETVFHLAARN 249

Query:   243 GHVD----VVKALLSKDPQLARRTDKKGQTALHMAVKGQ-SCEVVKLLLEADAAIVMLPD 297
              ++D    + ++L      L ++TD+ G T LH+A        +++ ++  +   +   +
Sbjct:   250 KNMDAFVFMAESLGINSQILLQQTDESGNTVLHIAASVSFDAPLIRYIVGKNIVDITSKN 309

Query:   298 KFGNTALHVATRKKRT-EIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDC 356
             K G  A  +  R+ +  E+++  L         L  D +  ++  EG   S+E   I+  
Sbjct:   310 KMGFEAFQLLPREAQDFELLSRWLRFGTETSQEL--DSENNVEQHEG---SQEVEVIR-- 362

Query:   357 LARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIX 416
             L R   +  +E           + + K+    ++E+ R+      N+  ++   H E + 
Sbjct:   363 LLRIIGINTSE-----------IAERKRSKEQEVERGRQ------NLEYQM---HIEALQ 402

Query:   417 XXXXXXXXXXXXXXXXXXXSIFTVPGG--DDD--NGKAVVVRRASFKIFFIFNAIALFTS 472
                                     PGG   D    GK++V +  +FK+F I N IALFTS
Sbjct:   403 NARNTIAIVAVLIASVAYAGGINPPGGVYQDGPWRGKSLVGKTTAFKVFAICNNIALFTS 462

Query:   473 LAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRH--EWA-AI 529
             L +V++ ++++  + K  KR++   +++MW++    + A+IA+S++ +   H  +W    
Sbjct:   463 LGIVILLVSIIPYKRKPLKRLLVATHRMMWVSVGFMATAYIAASWVTIPHYHGTQWLFPA 522

Query:   530 LVTVVGGLI 538
             +V V GG +
Sbjct:   523 IVAVAGGAL 531

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
 Identities = 74/255 (29%), Positives = 122/255 (47%)

Query:    98 DSQMVGNLSGAEFDTE--VAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKE 155
             D+ +   L G   +    +  ++  V  + N    + L+ A + G+ E+V ++L+ S+  
Sbjct:   147 DTALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHELVLKMLESSSSP 206

Query:   156 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVN 215
              +     SG   +H A       I+ ++L  DP L +       T L   A+ G    + 
Sbjct:   207 SILASMFSGKSVIHAAMKANRRDILGIVLRQDPGLIELRNEEGRTCLSYGASMGCYEGIR 266

Query:   216 ELLSK-D---GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH 271
              +L++ D     L  ++  +G   +H AA++GHV ++K  L   P      + + Q   H
Sbjct:   267 YILAEFDKAASSLCYVADDDGFTPIHMAAKEGHVRIIKEFLKHCPDSRELLNNQCQNIFH 326

Query:   272 MA-VKGQSCEVVKLLLEADAAIVML--PDKFGNTALHVATRKKRTEIVTELLSLPD-TNV 327
             +A + G+S +VVK LL+ D    M+   D  GNT LH+AT K R  IV  +L+  D  N+
Sbjct:   327 VAAIAGKS-KVVKYLLKLDEGKRMMNEQDINGNTPLHLAT-KHRYPIVVNMLTWNDGINL 384

Query:   328 NALTRDHKTALDIAE 342
              AL  +  TALDIAE
Sbjct:   385 RALNNEGFTALDIAE 399

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C7A2	Y3236_ARATH	No assigned EC number	0.8209	0.9915	0.9932	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00080423 hypothetical protein (588 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	591
pfam13962	114	pfam13962, PGG, Domain of unknown function	5e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-25
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-13
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-07
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	3e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-06
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-06
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	1e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	5e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
PRK00733	666	PRK00733, hppA, membrane-bound proton-translocatin	2e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-04
smart00248	30	smart00248, ANK, ankyrin repeats	8e-04
pfam00335	221	pfam00335, Tetraspannin, Tetraspanin family	8e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
pfam03030	669	pfam03030, H_PPase, Inorganic H+ pyrophosphatase	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.003
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  113 bits (286), Expect = 5e-30
 Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 412 REGINNATNSVTVVAVLFATVAFASIFTVPGG------DDDNGKAVVV-RRASFKIFFIF 464
            E +    NS+ VVA L ATV FA+ FT PGG          G  ++  +   FK FF+ 
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 465 NAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIV 519
           N IA   SL  V++ + +V   ++   R++  +  L+WL+ +   VAF A SY V
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSRRLPRLL-ALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  108 bits (271), Expect = 6e-28
 Identities = 50/121 (41%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           TPL  AA+ GH  VV  LL   G  +    ++G+  LH AA+ GH+++VK LL K   + 
Sbjct: 9   TPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV- 66

Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 319
              DK G T LH+A +  + +VVKLLL+   A V   DK G T LH+A +    E+V  L
Sbjct: 67  NARDKDGNTPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

Query: 320 L 320
           L
Sbjct: 126 L 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  100 bits (250), Expect = 4e-25
 Identities = 50/130 (38%), Positives = 68/130 (52%), Gaps = 4/130 (3%)

Query: 123 NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQV 182
           N  +E G T L  AA  GH+EVV  LL+      +  K+  G  PLH+AA  GH  IV++
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGAD--VNAKDNDGRTPLHLAAKNGHLEIVKL 58

Query: 183 LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 242
           LL+    ++        TPL  AA  G+  VV  LL   G  +     +G+  LH AA+ 
Sbjct: 59  LLEKGADVNARD-KDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDGRTPLHLAAKN 116

Query: 243 GHVDVVKALL 252
           GH++VVK LL
Sbjct: 117 GHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  100 bits (250), Expect = 5e-25
 Identities = 47/112 (41%), Positives = 63/112 (56%), Gaps = 3/112 (2%)

Query: 230 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 289
            +G+  LH AA  GH++VVK LL     +  + D  G+T LH+A K    E+VKLLLE  
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 290 AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
            A V   DK GNT LH+A R    ++V  LL     +VNA  +D +T L +A
Sbjct: 64  -ADVNARDKDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 7/95 (7%)

Query: 236 LHFAARQGHVDVVKALLSKDPQL-ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM 294
           LH AA+ G++++VK LL K   +    TD    TALH+A +  + E+VKLLLE  A +  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 295 LPDKFGNTALHVATRKKRTEIVTELLSL-PDTNVN 328
             DK GNTALH+A R    EIV  LL    D N+ 
Sbjct: 57  -KDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 168 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 227
           LH+AA  G+  +V++LL+    +         T L  AA  G+  +V  LL   G  +  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEH-GADVNA 56

Query: 228 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 261
              +G  ALH AAR G++++VK LL     +  +
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.4 bits (181), Expect = 4e-16
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 261
           L  AA  G+  +V  LL K     +++  +   ALH AAR G++++VK LL     +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA---DVNLGDTDTALHLAARNGNLEIVKLLLEHGADV-NA 56

Query: 262 TDKKGQTALHMAVKGQSCEVVKLLLEADAAI 292
            DK G TALH+A +  + E+VKLLLE  A I
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 73.6 bits (181), Expect = 1e-15
 Identities = 34/80 (42%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 262 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 321
            D+ G+T LH+A      EVVKLLLE   A V   D  G T LH+A +    EIV  LL 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 322 LPDTNVNALTRDHKTALDIA 341
               +VNA  +D  T L +A
Sbjct: 62  K-GADVNARDKDGNTPLHLA 80

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 28/117 (23%)

Query: 78  LHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTA 136
           LHLAA+ G+L  VK +L  G D                       VN  +   +TAL  A
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD-----------------------VNLGDT--DTALHLA 35

Query: 137 ADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT 193
           A  G++E+V  LL++     +  K++ G   LH+AA  G+  IV++LL+H   ++  
Sbjct: 36  ARNGNLEIVKLLLEHGAD--VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 71.6 bits (176), Expect = 3e-13
 Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 33/215 (15%)

Query: 133 LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA-----IVQVLLDHD 187
           L+ A +  +I+VV  LL        + KN S   PLH  +   ++      IV++LL++ 
Sbjct: 39  LYLAKEARNIDVVKILLDNGADINSSTKNNST--PLHYLSNIKYNLTDVKEIVKLLLEYG 96

Query: 188 PSLSQTTGPSNATPLVSAATR--GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 245
            +++        TPL+ A ++     ++V  LL   G  + I  S+G+N LH       +
Sbjct: 97  ANVNAPDNNGI-TPLLYAISKKSNSYSIVEYLLDN-GANVNIKNSDGENLLHLYLESNKI 154

Query: 246 D--VVKALLSK--DPQLARR-------------TDKKGQTALHMAVKGQSCEVVKLLLE- 287
           D  ++K L+ K  D     R              D  G T LH AV   + E VK LL+ 
Sbjct: 155 DLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDL 214

Query: 288 -ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 321
            A+  +V   +K+G+T LH+A      EI   LL+
Sbjct: 215 GANPNLV---NKYGDTPLHIAILNNNKEIFKLLLN 246

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 67.5 bits (164), Expect = 1e-12
 Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 9/211 (4%)

Query: 126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 185
           ++   +AL          ++  LL   + +     ++     L +A +        +L  
Sbjct: 1   SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKL 60

Query: 186 HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH- 244
                          PL SAA++G   +V  LL+  G  +    ++G   LH AA  G+ 
Sbjct: 61  IVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLA-SGADVNAKDADGDTPLHLAALNGNP 119

Query: 245 ----VDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
               ++V K LL    D  +    D+ G T LH A      ++V+LLLEA A      + 
Sbjct: 120 PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNS 178

Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNA 329
           +G TAL  A +  R E+V  LL         
Sbjct: 179 YGVTALDPAAKNGRIELVKLLLDKGLHLSLL 209

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 61.8 bits (149), Expect = 9e-11
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 10/164 (6%)

Query: 131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH-----HAIVQVLLD 185
             L +AA KG  ++V  LL       +  K+  G  PLH+AA+ G+       + ++LL+
Sbjct: 75  LPLHSAASKGDDKIVKLLLASG--ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE 132

Query: 186 H--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 243
              D  ++        TPL  AA  G   +V  LL   G       S G  AL  AA+ G
Sbjct: 133 AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAKNG 191

Query: 244 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 287
            +++VK LL K   L+         A     K     +  L++ 
Sbjct: 192 RIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 234 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 286
            ALH AA  G +++VK LL K   +  RTD+ G TALH+A +  + EV+KLLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDIN-RTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 251 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 307
           LL   P     TD  G T LH+A K  + E+V+ LL+    +  L D  G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 270 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 329
           LH+A K  + E+VKLLLE  A  V L D   +TALH+A R    EIV  LL     +VNA
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA-DVNLGDT--DTALHLAARNGNLEIVKLLLEH-GADVNA 56

Query: 330 LTRDHKTALDIA 341
             +D  TAL +A
Sbjct: 57  KDKDGNTALHLA 68

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 217 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 273
           LL      L  +  NG   LH AA+ G +++V+ LL K        D  G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 55.4 bits (133), Expect = 4e-08
 Identities = 56/269 (20%), Positives = 105/269 (39%), Gaps = 35/269 (13%)

Query: 130 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS 189
           + AL  A   G +++   LL           +  G  P+ +A        +++L+ H  +
Sbjct: 3   QVALCDAILFGELDIARRLLDIGINPNFEIYD--GISPIKLAMKFRDSEAIKLLMKHG-A 59

Query: 190 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 249
           +     P   + L  A   G    V ELL       ++   +G   LH A     +D++K
Sbjct: 60  IPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMK 119

Query: 250 ALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 307
            L+++  DP +   TDK   + LH+AV     + ++LL++  A +  + D  G T L +A
Sbjct: 120 LLIARGADPDIP-NTDKF--SPLHLAVMMGDIKGIELLIDHKACL-DIEDCCGCTPLIIA 175

Query: 308 TRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANE 367
             K    I   LL     N++   ++                        A C A+  N+
Sbjct: 176 MAKGDIAICKMLLD-SGANIDYFGKN--------------------GCVAALCYAIENNK 214

Query: 368 LNQPRDELRK-----TVTQIKKDVHTQLE 391
           ++  R  +++      +  I+ +  T L+
Sbjct: 215 IDIVRLFIKRGADCNIMFMIEGEECTILD 243

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 55.7 bits (134), Expect = 4e-08
 Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 6/164 (3%)

Query: 179 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 238
           I ++LL +   ++        T L  A       +   LLS    +    ++N  + LH 
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTN-NSPLHH 207

Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV-KGQSCEVVKLLLEADAAIVMLPD 297
           A +  +  +V  LL        R DK G T LH++V   +  +++KLLLE    +     
Sbjct: 208 AVKHYNKPIVHILLENGASTDAR-DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY 266

Query: 298 KFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
             G TALH + + +R     +LL     ++N+L     T L  A
Sbjct: 267 ILGLTALHSSIKSER---KLKLLLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 58/221 (26%), Positives = 83/221 (37%), Gaps = 39/221 (17%)

Query: 122 VNEVNELGETALFTAADK--GHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH-- 177
           VN  +  G T L  A  K      +V  LL       +  KN  G + LH+         
Sbjct: 99  VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN--VNIKNSDGENLLHLYLESNKIDL 156

Query: 178 AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH 237
            I+++L+D                 ++A  R     VN LLS  G  + I    G   LH
Sbjct: 157 KILKLLIDK-----------GVD--INAKNR-----VNYLLSY-GVPINIKDVYGFTPLH 197

Query: 238 FAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA------- 288
           +A    + + VK LL    +P L    +K G T LH+A+   + E+ KLLL         
Sbjct: 198 YAVYNNNPEFVKYLLDLGANPNL---VNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTI 254

Query: 289 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 329
              ++   DK  NT   +   KK   I+   L  P    N 
Sbjct: 255 IETLLYFKDKDLNTITKIKMLKK--SIMYMFLLDPGFYKNR 293

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 24/180 (13%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           ++ELH A + GD+ AV+++L       +G  +   F  +               G T L 
Sbjct: 69  ESELHDAVEEGDVKAVEELL------DLGKFADDVFYKD---------------GMTPLH 107

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 194
            A     ++++  L+       +   ++  F PLH+A + G    +++L+DH   L    
Sbjct: 108 LATILKKLDIMKLLIARGADPDIPNTDK--FSPLHLAVMMGDIKGIELLIDHKACLDIED 165

Query: 195 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 254
                TPL+ A  +G  A+   LL     +    ++    AL +A     +D+V+  + +
Sbjct: 166 C-CGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224

Length = 413

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 11/220 (5%)

Query: 133 LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ 192
           L T A  G+  ++ ELLK      +   +  G  PLHIAA +G+   V VLL H  ++  
Sbjct: 529 LLTVASTGNAALLEELLKAKLDPDIG--DSKGRTPLHIAASKGYEDCVLVLLKHACNVHI 586

Query: 193 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-GKNALHFAARQGHVDVVKAL 251
                N T L +A +  H  +   L         IS  +   + L  AA++  +  +K L
Sbjct: 587 RDANGN-TALWNAISAKHHKIFRILYH----FASISDPHAAGDLLCTAAKRNDLTAMKEL 641

Query: 252 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE--ADAAIVMLPDKFGNTALHVATR 309
           L +   +    D +G TAL +A+     ++V+LL+   AD       D F  T L    +
Sbjct: 642 LKQGLNVDSE-DHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQ 700

Query: 310 KKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEE 349
           K+       ++     +   L RD  +     +G  S  +
Sbjct: 701 KRELGHSITIVDSVPADEPDLGRDGGSRPGRLQGTSSDNQ 740

Length = 823

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 7/117 (5%)

Query: 232 GKNALHFAARQGHV-DVV---KALLSKDPQLARRTDKKGQTALHMAV---KGQSCEVVKL 284
           G+N LH+  R G V D++    A+  ++  L    ++ G+  +H+     K    E +KL
Sbjct: 17  GENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKL 76

Query: 285 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           L+E  A I      FGNT LH+A   +  E+ T L + P  N+  L    KT   +A
Sbjct: 77  LMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVA 133

Length = 154

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 285 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           LLE     +   D  GNT LH+A +    E+V  LL     ++N    D  TALD+A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPG-VDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 51.9 bits (124), Expect = 6e-07
 Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 45/252 (17%)

Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           VN  +   +T L  A  KG +E +  L +Y     +  ++ +G  P+HIA       I++
Sbjct: 117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI--EDDNGCYPIHIAIKHNFFDIIK 174

Query: 182 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
           +LL+                                    G    +  +NG++ LH AA 
Sbjct: 175 LLLE-----------------------------------KGAYANVKDNNGESPLHNAAE 199

Query: 242 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 301
            G    +K L+     +  +  K G T LH A+   +   ++LL+  + A +   D  G+
Sbjct: 200 YGDYACIKLLIDHGNHIMNKC-KNGFTPLHNAII-HNRSAIELLI--NNASINDQDIDGS 255

Query: 302 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG 361
           T LH A        + ++L     +++      +  +D A       +   IKD +A   
Sbjct: 256 TPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTA--FKYINKDPVIKDIIA--N 311

Query: 362 AVRANELNQPRD 373
           AV   E ++ +D
Sbjct: 312 AVLIKEADKLKD 323

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 24/84 (28%)

Query: 69  VTGRHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNE 127
           V     DT LHLAA+ G+L  VK +L +G D                       VN  ++
Sbjct: 23  VNLGDTDTALHLAARNGNLEIVKLLLEHGAD-----------------------VNAKDK 59

Query: 128 LGETALFTAADKGHIEVVNELLKY 151
            G TAL  AA  G++E+V  LL++
Sbjct: 60  DGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 23/138 (16%)

Query: 171 AAVQGHHAIVQVLLDHDPSLSQ-TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR 229
           AA +G  A V   L+    L+         + L  AA       + ELL        +  
Sbjct: 24  AAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAV-- 81

Query: 230 SNGKNALHFAARQGHVDVVKALLS---------------KDPQLARRTDKKGQTALHMAV 274
             G   LH A    +VD V+A+L                 D   +  T   G TALH+A 
Sbjct: 82  --GDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFT--PGITALHLAA 136

Query: 275 KGQSCEVVKLLLEADAAI 292
             Q+ E+VKLLLE  A++
Sbjct: 137 HRQNYEIVKLLLERGASV 154

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
           TAL  AA  G +E+V  LL+      + R +  G   LHIAA  G+  ++++LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD--INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISR--SNGKNALHFAARQGHVDVVKALL 252
           T L  AA  G   +V  LL K    ++I+R   +G  ALH AA  G+++V+K LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKG---VDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 59/234 (25%), Positives = 91/234 (38%), Gaps = 30/234 (12%)

Query: 123 NEVNELGETALF---TAADKGHIEVVNELLKYSTKEGLTRKNRSGFD--PLHIAAVQGHH 177
             V+ + E AL+     A    +E V  LL      G     R  +   PLH+       
Sbjct: 5   ESVDIIMEAALYDYLLNASNVTVEEVRRLLAA----GADVNFRGEYGKTPLHLYLHYSSE 60

Query: 178 A---IVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG 232
               IV++LL+   D +  +  G    TPL        T  V +LL K G  +      G
Sbjct: 61  KVKDIVRLLLEAGADVNAPERCG---FTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVG 117

Query: 233 KNALHFAAR--QGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSC--EVVKLLL 286
           +  LH        +  V++ LL K  D       D  G T L + +K ++   E+++LL+
Sbjct: 118 RTPLHVYLSGFNINPKVIRLLLRKGADV---NALDLYGMTPLAVLLKSRNANVELLRLLI 174

Query: 287 EADAAIVMLPDKFGNTALHV--ATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 338
           +A A +  + D    + LH    + K R  IV EL+     +  A      T L
Sbjct: 175 DAGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRA-GCDPAATDMLGNTPL 226

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 164 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 218
           G   LH AA+ G   +V+ LL+    +++T      T L  AA  G+  V+  LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDE-DGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 10/126 (7%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 188
           G T L  AA KG+ + V  LLK++    +  ++ +G   L  A    HH I ++L  H  
Sbjct: 558 GRTPLHIAASKGYEDCVLVLLKHACNVHI--RDANGNTALWNAISAKHHKIFRILY-HFA 614

Query: 189 SLS--QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 246
           S+S     G      L +AA R     + ELL K G  ++     G  AL  A  + HVD
Sbjct: 615 SISDPHAAGDL----LCTAAKRNDLTAMKELL-KQGLNVDSEDHQGATALQVAMAEDHVD 669

Query: 247 VVKALL 252
           +V+ L+
Sbjct: 670 MVRLLI 675

Length = 823

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.0 bits (114), Expect = 9e-06
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 24/143 (16%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD---- 255
           TPL+ A   G   +V EL  K G  +    +   + L  A + G  D++K L+       
Sbjct: 37  TPLIDAIRSGDAKIV-ELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTS 95

Query: 256 ----PQLARRT--------------DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD 297
               P + +                D + +T LH A+K    E +K+L E  A  V + D
Sbjct: 96  ILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIED 154

Query: 298 KFGNTALHVATRKKRTEIVTELL 320
             G   +H+A +    +I+  LL
Sbjct: 155 DNGCYPIHIAIKHNFFDIIKLLL 177

Length = 434

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 230 SNGKNALHFAARQGHVDVVKALL-----SKDPQLARRTDKKGQTALHMAV----KGQSCE 280
           S G+N  H AAR G  D++                  TD  GQ  +H+A        + E
Sbjct: 19  SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAE 78

Query: 281 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 340
           ++  L+E  A I       G+TALH+A  ++  ++   L   P  +++    D+K+  ++
Sbjct: 79  IIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFEL 138

Query: 341 AE 342
           A 
Sbjct: 139 AI 140

Length = 169

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 61/243 (25%), Positives = 89/243 (36%), Gaps = 67/243 (27%)

Query: 81  AAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKG 140
           AA+RGDL +V + L                     E +   +N  + LG +ALF AA + 
Sbjct: 24  AAERGDLASVYRDL--------------------EEPKKLNINCPDRLGRSALFVAAIEN 63

Query: 141 HIEVVNELLKYSTKEGLTRKNRSGFDPLHIAA---VQGHHAIVQVLLDHDPSLSQTTGPS 197
               + ELL   +  G           LH  +   V    AI+  LL      S     +
Sbjct: 64  ENLELTELLLNLSCRGAVGDTL-----LHAISLEYVDAVEAILLHLLAAFRK-SGPLELA 117

Query: 198 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ 257
           N     S  T G T                       ALH AA + + ++VK LL +   
Sbjct: 118 ND-QYTSEFTPGIT-----------------------ALHLAAHRQNYEIVKLLLERGAS 153

Query: 258 L-AR-------RTDKK-----GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 304
           + AR       ++        G++ L+ A    S  +V LL E D A ++  D  GNT L
Sbjct: 154 VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE-DPADILTADSLGNTLL 212

Query: 305 HVA 307
           H+ 
Sbjct: 213 HLL 215

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 24/82 (29%)

Query: 69  VTGRHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNE 127
              +  +T LHLAA+ G+L  VK +L +G D                       VN  ++
Sbjct: 68  ARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-----------------------VNARDK 104

Query: 128 LGETALFTAADKGHIEVVNELL 149
            G T L  AA  GH+EVV  LL
Sbjct: 105 DGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 24/77 (31%)

Query: 74  NDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETA 132
             T LH AA  G L  VK +L  G+D                       +N  +E G TA
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD-----------------------INRTDEDGNTA 37

Query: 133 LFTAADKGHIEVVNELL 149
           L  AA+ G++EV+  LL
Sbjct: 38  LHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 233 KNALHFAARQGHV----DVVKALLSKDPQLARRTDKKGQTALHMAVK-GQSCEVVK--LL 285
           +N      R G++    +V    +S D  L  R D  G+   HM     ++  V+K  LL
Sbjct: 21  QNTFLRICRTGNIYELMEVA-PFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELL 79

Query: 286 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           +   A I       GNT LH+A   K  E+   L      N+ A+   H+TA  IA
Sbjct: 80  VNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIA 135

Length = 166

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 231 NGKNALHFAARQGHVDVVKALLSK 254
           +G   LH AAR GH++VVK LL  
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|234827 PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated

 Score = 43.6 bits (104), Expect = 2e-04
 Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 23/143 (16%)

Query: 423 TVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIF-FIFNAIALFTSLAVVVVQIT 481
           +    + A +   +              V+        F  +  A+ +  S    ++ I 
Sbjct: 211 SYAVTIVAAMVLGAAAADAAFGV---AGVL--------FPLLIAAVGIIAS----IIGIF 255

Query: 482 LVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVG---RRHEWAAILVTVVGGLI 538
            VR         ++ +N+ + + +V + V    ++Y ++G       W  +   V+ GL+
Sbjct: 256 FVR--LGKGGNPMKALNRGLIVTAVLSIVLTYFATYWLLGDGADGFTWLNLFGAVLIGLV 313

Query: 539 MAGVLGTMT-YYVVKSKR-VRSI 559
           +  ++G +T YY     R V+ I
Sbjct: 314 VGALIGLITEYYTSTEYRPVKEI 336

Length = 666

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 263 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 322
           D  G+T LH+A      +VV++LLE  A   +L DK G T L +A      E+V  L   
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEFGADPTLL-DKDGKTPLELAEENGFREVVQLLSRH 170

Query: 323 PDTNVNALTRDHKTALDIAEGLPSSEEASEI 353
              +            D   G P S E S I
Sbjct: 171 SQCHFEL---GANAKPDSFTGKPPSLEDSPI 198

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 183 LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 239
           LL+H P     T  +  TPL  AA  G   +V  LL K G  L +  S+G  AL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 11/200 (5%)

Query: 139 KGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN 198
             +IE ++    YST   L       F PLH A    +  +V+ LL    +++Q     +
Sbjct: 17  LKYIEYIDHTENYSTSASLIP-----FIPLHQAVEARNLDVVKSLLTRGHNVNQP-DHRD 70

Query: 199 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 258
            TPL       +   + E++     + + S      A+  A    +V++ K +L+   + 
Sbjct: 71  LTPLHIICKEPNKLGMKEMIRS---INKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKN 127

Query: 259 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE 318
            +  D                E+ KLLL   A I M     GNTALH AT  K   + TE
Sbjct: 128 IQTIDLV-YIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRL-TE 185

Query: 319 LLSLPDTNVNALTRDHKTAL 338
           LL     NVN   + + + L
Sbjct: 186 LLLSYGANVNIPDKTNNSPL 205

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 32/206 (15%)

Query: 72  RHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGE 130
               T LH A ++GDL ++K +  YG D                       VN  ++ G 
Sbjct: 122 AELKTFLHYAIKKGDLESIKMLFEYGAD-----------------------VNIEDDNGC 158

Query: 131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 190
             +  A      +++  LL+         K+ +G  PLH AA  G +A +++L+DH   +
Sbjct: 159 YPIHIAIKHNFFDIIKLLLEKGAY--ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI 216

Query: 191 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG-HVDVVK 249
                 +  TPL +A     +A+  ELL  +   +     +G   LH A      +D++ 
Sbjct: 217 MNKCK-NGFTPLHNAIIHNRSAI--ELLINNAS-INDQDIDGSTPLHHAINPPCDIDIID 272

Query: 250 ALLSKDPQLARRTDKKGQTALHMAVK 275
            LL     ++ + D KG+  +  A K
Sbjct: 273 ILLYHKADISIK-DNKGENPIDTAFK 297

Length = 434

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 231 NGKNALHFAARQGHVDVVKALLSKDP 256
           +G+  LH AA  G+++VVK LL K  
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGA 26

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 17/137 (12%)

Query: 460 IFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYI- 518
           + F+ N + L   LA++ V I L+          +    + +++  +   V  +   ++ 
Sbjct: 5   LLFLLNLLFLLLGLALLAVGIWLLVIAKDYLAIALNDSIRALYILIIVLGVIILLVGFLG 64

Query: 519 VVGRRHEWAAILVTVVGGLIM-------AGVLGTMTYYVVKSKRVRSIRKREKNARMRSG 571
             G   E   +L+T    L++       AG+L     +V + K   S+++      +   
Sbjct: 65  CCGAIKESRCLLLTYFILLLILFILEIAAGILA----FVYRDKLESSLKE-----GLNYK 115

Query: 572 SNSWYPSDYSNSEIDRI 588
             S+         ID +
Sbjct: 116 DKSYNDDPNLTEAIDEL 132

Length = 221

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 246 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH 305
           ++ K LLS    +  +   KG TALH A + +   + +LLL +  A V +PDK  N+ LH
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKTNNSPLH 206

Query: 306 VATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 343
            A +     IV  LL     + +A  +   T L I+ G
Sbjct: 207 HAVKHYNKPIVHILLE-NGASTDARDKCGNTPLHISVG 243

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 265 KGQTALHMAVKGQSCEVVKLLLEADAAI 292
            G T LH+A +    EVVKLLLEA A +
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 164 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 194
           G  PLH+AA  GH  +V++LL+    ++   
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 231 NGKNALHFAARQGHVDVVKALLSKDPQL 258
           +G   LH AAR G++++VK LL     +
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 231 NGKNALHFAARQGHVDVVKALLS--KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 286
           +G+  LH A   GHV VV+ LL    DP L    DK G+T L +A +    EVV+LL 
Sbjct: 114 DGRTPLHIACANGHVQVVRVLLEFGADPTL---LDKDGKTPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase

 Score = 40.5 bits (96), Expect = 0.002
 Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 21/142 (14%)

Query: 423 TVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITL 482
           +    + A +   +      G D     V+          +  A+ +  S+         
Sbjct: 225 SYAVTIVAAMVLGAAL---FGADGVQAGVL-------FPLLVAAVGIIASIIGTF----F 270

Query: 483 VRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVG---RRHEWAAILVTVVGGLIM 539
           VR  T      ++ +N+ + ++++ + VA   ++Y ++    +   W  + + V+ GL+ 
Sbjct: 271 VR--TGKGANPMKALNRGLIVSAILSIVATYFATYWLLPAAGKGFLWWNLFLAVLIGLVA 328

Query: 540 AGVLGTMT-YYVVKSKR-VRSI 559
             ++G +T YY   S R VR I
Sbjct: 329 GALIGLITEYYTSTSYRPVREI 350

The H+ pyrophosphatase is an transmembrane proton pump involved in establishing the H+ electrochemical potential difference between the vacuole lumen and the cell cytosol. Vacuolar-type H(+)-translocating inorganic pyrophosphatases have long been considered to be restricted to plants and to a few species of photo-trophic bacteria. However, in recent investigations, these pyrophosphatases have been found in organisms as disparate as thermophilic Archaea and parasitic protists. Length = 669

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           TP+  AA RG+  +VN LLS  G  + I   +  + L  A    ++D +KA++       
Sbjct: 180 TPIHYAAERGNAKMVNLLLSY-GADVNIIALDDLSVLECAVDSKNIDTIKAIIDN----- 233

Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR-TEIVTE 318
           R    K   +L  A++ +  E   LL +A  ++  + D   NT LH A++    + +V +
Sbjct: 234 RSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSI-DDCKNTPLHHASQAPSLSRLVPK 292

Query: 319 LL 320
           LL
Sbjct: 293 LL 294

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 115 AEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIA 171
            E     +N  +  G T L  AA  G +E+V  LLK      L  ++  G   L +A
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP--GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 265 KGQTALHMAVKGQSCEVVKLLLEADAAI 292
            G T LH+A +  + E+VKLLLE  A I
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	591
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02917	661	ankyrin-like protein; Provisional	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.98
PHA02730	672	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
PF13962	113	PGG: Domain of unknown function	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.88
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.87
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.82
PHA02741	169	hypothetical protein; Provisional	99.82
PHA02743	166	Viral ankyrin protein; Provisional	99.81
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.8
PHA02736	154	Viral ankyrin protein; Provisional	99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.78
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.77
PHA02884	300	ankyrin repeat protein; Provisional	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.74
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.74
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.73
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.63
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.61
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.61
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.59
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.55
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.51
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.49
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.46
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.42
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.38
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.31
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.31
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.26
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.26
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.25
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.23
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.22
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.2
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.18
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.89
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.67
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.61
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.61
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.58
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.57
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.51
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.5
KOG0522	560	consensus Ankyrin repeat protein [General function	98.44
PF13606	30	Ank_3: Ankyrin repeat	98.36
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.36
PF13606	30	Ank_3: Ankyrin repeat	98.35
KOG0522	560	consensus Ankyrin repeat protein [General function	98.25
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.22
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.2
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.19
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.15
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.11
KOG0511	516	consensus Ankyrin repeat protein [General function	97.84
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.81
KOG2384	223	consensus Major histocompatibility complex protein	97.8
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.76
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.76
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.74
KOG2384	223	consensus Major histocompatibility complex protein	97.58
KOG0511	516	consensus Ankyrin repeat protein [General function	97.52
KOG2505	591	consensus Ankyrin repeat protein [General function	97.23
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.79
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.75
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.48
KOG2505	591	consensus Ankyrin repeat protein [General function	93.75
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.54
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	92.8
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.55
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.79
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.42
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	83.41
COG4298	95	Uncharacterized protein conserved in bacteria [Fun	82.08

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.8e-37  Score=327.16  Aligned_cols=265  Identities=20%  Similarity=0.274  Sum_probs=232.0

Q ss_pred             hccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHH
Q 007741           68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNE  147 (591)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~  147 (591)
                      ...+.+|.||||.|+..|+.++|++|++.                      ++.++..+..|.||||.|+..|+.+++++
T Consensus        29 n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~----------------------Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~   86 (434)
T PHA02874         29 NISVDETTTPLIDAIRSGDAKIVELFIKH----------------------GADINHINTKIPHPLLTAIKIGAHDIIKL   86 (434)
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHC----------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            34567889999999999999999999986                      67788889999999999999999999999


Q ss_pred             HHhcCCCc---------------------cCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHH
Q 007741          148 LLKYSTKE---------------------GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA  206 (591)
Q Consensus       148 Ll~~~~~~---------------------~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  206 (591)
                      |+++|.+.                     +++..+..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+
T Consensus        87 Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~  165 (434)
T PHA02874         87 LIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAI  165 (434)
T ss_pred             HHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHH
Confidence            99987542                     34567888999999999999999999999999998 567889999999999


Q ss_pred             HcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHH
Q 007741          207 TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL  286 (591)
Q Consensus       207 ~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  286 (591)
                      ..|+.+++++|+++ +...+..+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||.|+..+. +.+++|+
T Consensus       166 ~~~~~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~~~-~~i~~Ll  242 (434)
T PHA02874        166 KHNFFDIIKLLLEK-GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNR-SAIELLI  242 (434)
T ss_pred             HCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHCCh-HHHHHHH
Confidence            99999999999988 4566778999999999999999999999999999998 6678899999999999765 5666666


Q ss_pred             HcCcccccCCCCCCCcHHHHHHHcC-cHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCccc
Q 007741          287 EADAAIVMLPDKFGNTALHVATRKK-RTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  364 (591)
Q Consensus       287 ~~~~~~~~~~d~~g~T~Lh~A~~~g-~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  364 (591)
                       .+++ ++.+|..|+||||+|+..+ +.+++++|++ .|+|++.+|..|+||||+|.+...   ...+++.|...+...
T Consensus       243 -~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~-~gad~n~~d~~g~TpL~~A~~~~~---~~~~ik~ll~~~~~~  315 (434)
T PHA02874        243 -NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLY-HKADISIKDNKGENPIDTAFKYIN---KDPVIKDIIANAVLI  315 (434)
T ss_pred             -cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHhCC---ccHHHHHHHHhcCch
Confidence             4666 7889999999999999876 8899999999 599999999999999999998652   234666777766543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.6e-36  Score=314.74  Aligned_cols=239  Identities=26%  Similarity=0.326  Sum_probs=215.2

Q ss_pred             cccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHh-----CCCCCccc
Q 007741          119 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD-----HDPSLSQT  193 (591)
Q Consensus       119 ~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~-----~~~~~~~~  193 (591)
                      +.++|..|+.|.||||+||..++.|..+.|++.+++  ....|.+|++|+|.|+++|..++.+..+.     +...+ +.
T Consensus       144 ~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~--~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i-n~  220 (929)
T KOG0510|consen  144 GADVNLEDENGFTPLHLAARKNKVEAKKELINKGAD--PCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI-NF  220 (929)
T ss_pred             cCCccccccCCCchhhHHHhcChHHHHHHHHhcCCC--CCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccc-cc
Confidence            688999999999999999999999988999997765  57788899999999999999999999998     34444 56


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc--------------ceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccc
Q 007741          194 TGPSNATPLVSAATRGHTAVVNELLSKDGGL--------------LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA  259 (591)
Q Consensus       194 ~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~--------------~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  259 (591)
                      .+.++.+|||.|+..|+.++++.+|+.+...              ++..|++|.||||+|++.|+.+.++.|+..|+++ 
T Consensus       221 ~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-  299 (929)
T KOG0510|consen  221 DNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-  299 (929)
T ss_pred             ccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-
Confidence            6788999999999999999999999875432              3346889999999999999999999999999999 


Q ss_pred             cccCCCCCcHHHHHHhCCCHHHHHHHHH-cCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcc---cccCCCC
Q 007741          260 RRTDKKGQTALHMAVKGQSCEVVKLLLE-ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVN---ALTRDHK  335 (591)
Q Consensus       260 ~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~-~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~---~~d~~G~  335 (591)
                      +.++.++.||||.||..|+.+.++.|++ .+--+.|..|..|+||||+|++.|+.++++.||+. |++..   ..|.+|+
T Consensus       300 ~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~-GA~~~~~~e~D~dg~  378 (929)
T KOG0510|consen  300 NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK-GALFLNMSEADSDGN  378 (929)
T ss_pred             cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhc-ChhhhcccccccCCc
Confidence            7779999999999999999999999999 77677899999999999999999999999999995 78766   5699999


Q ss_pred             CHHHHHhhCCCChhhHHHHHHHHhcCccccc
Q 007741          336 TALDIAEGLPSSEEASEIKDCLARCGAVRAN  366 (591)
Q Consensus       336 t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~  366 (591)
                      ||||+|+.++    +...+++|+.+|++...
T Consensus       379 TaLH~Aa~~g----~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  379 TALHLAAKYG----NTSAVQKLISHGADIGV  405 (929)
T ss_pred             hhhhHHHHhc----cHHHHHHHHHcCCceee
Confidence            9999999999    89999999999998744

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-37  Score=334.46  Aligned_cols=267  Identities=25%  Similarity=0.304  Sum_probs=246.5

Q ss_pred             hhhccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHH-----HHHhC
Q 007741           66 VKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFT-----AADKG  140 (591)
Q Consensus        66 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~-----Aa~~g  140 (591)
                      .....+..+.||||.|+..|+.++++.|++.                      +..++..+..|.||||+     |+..|
T Consensus        27 ~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~----------------------g~~~~~~~~~~~t~L~~~~~~~a~~~~   84 (480)
T PHA03100         27 LNDYSYKKPVLPLYLAKEARNIDVVKILLDN----------------------GADINSSTKNNSTPLHYLSNIKYNLTD   84 (480)
T ss_pred             cchhhhcccchhhhhhhccCCHHHHHHHHHc----------------------CCCCCCccccCcCHHHHHHHHHHHhhc
Confidence            3445577889999999999999999999986                      66788889999999999     99999


Q ss_pred             cHHHHHHHHhcCCCccCccCCCCCChHHHHHH--HhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC--CHHHHHH
Q 007741          141 HIEVVNELLKYSTKEGLTRKNRSGFDPLHIAA--VQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG--HTAVVNE  216 (591)
Q Consensus       141 ~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~  216 (591)
                      +.+++++|+++|++.  +..+..|.||||+|+  ..|+.+++++|+++|+++ +..+..|.||||+|+..|  +.+++++
T Consensus        85 ~~~iv~~Ll~~ga~i--~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~  161 (480)
T PHA03100         85 VKEIVKLLLEYGANV--NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKL  161 (480)
T ss_pred             hHHHHHHHHHCCCCC--CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHH
Confidence            999999999988664  778889999999999  999999999999999997 667889999999999999  9999999


Q ss_pred             HHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCC------CcHHHHHHhCCC--HHHHHHHHHc
Q 007741          217 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG------QTALHMAVKGQS--CEVVKLLLEA  288 (591)
Q Consensus       217 LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g------~t~Lh~A~~~~~--~~~v~~Ll~~  288 (591)
                      |+++ +.+++..+..|.||||+|+..|+.+++++|+++|+++ +..+..|      .||||.|+..++  .+++++|+++
T Consensus       162 Ll~~-g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~  239 (480)
T PHA03100        162 LIDK-GVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY  239 (480)
T ss_pred             HHHC-CCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc
Confidence            9998 5567778889999999999999999999999999998 5567778      899999999999  9999999999


Q ss_pred             CcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccc
Q 007741          289 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA  365 (591)
Q Consensus       289 ~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~  365 (591)
                      |++ ++.+|..|.||||+|+..|+.+++++|++ .|+|++.+|..|+||+++|...+    ..+++++|++.|+...
T Consensus       240 g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpl~~A~~~~----~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        240 GVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLD-LGANPNLVNKYGDTPLHIAILNN----NKEIFKLLLNNGPSIK  310 (480)
T ss_pred             CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHhC----CHHHHHHHHhcCCCHH
Confidence            998 88999999999999999999999999999 58999999999999999999988    8899999999998644

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=327.24  Aligned_cols=267  Identities=20%  Similarity=0.267  Sum_probs=240.4

Q ss_pred             hhhhccCCCCCcHhHHHHHcC---CHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhC-
Q 007741           65 YVKQVTGRHNDTELHLAAQRG---DLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKG-  140 (591)
Q Consensus        65 ~~~~~~~~~g~t~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g-  140 (591)
                      ......+..|.||||.|+..|   +.++++.|++.                      +++++..|..|.||||+|+..| 
T Consensus        38 a~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~----------------------Gadin~~~~~g~TpLh~A~~~~~   95 (471)
T PHA03095         38 ADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA----------------------GADVNAPERCGFTPLHLYLYNAT   95 (471)
T ss_pred             CCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC----------------------CCCCCCCCCCCCCHHHHHHHcCC
Confidence            334556788999999999999   99999999986                      7789999999999999999999 


Q ss_pred             cHHHHHHHHhcCCCccCccCCCCCChHHHHHH--HhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC--CHHHHHH
Q 007741          141 HIEVVNELLKYSTKEGLTRKNRSGFDPLHIAA--VQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG--HTAVVNE  216 (591)
Q Consensus       141 ~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~  216 (591)
                      +.+++++|+++|++  ++..+..|.||||+|+  ..++.+++++|+++|+++ +..|..|.||||+|+..+  +.+++++
T Consensus        96 ~~~iv~lLl~~ga~--in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~  172 (471)
T PHA03095         96 TLDVIKLLIKAGAD--VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRL  172 (471)
T ss_pred             cHHHHHHHHHcCCC--CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHH
Confidence            59999999998765  6778899999999999  556899999999999998 677889999999999866  6899999


Q ss_pred             HHhcCCCcceecCCCCCcHHHHHHHc--CCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCH--HHHHHHHHcCccc
Q 007741          217 LLSKDGGLLEISRSNGKNALHFAARQ--GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC--EVVKLLLEADAAI  292 (591)
Q Consensus       217 LL~~~~~~~~~~~~~g~tpLh~A~~~--g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~--~~v~~Ll~~~~~~  292 (591)
                      |++++.. ....|..|.||||+|+..  ++.++++.|++.|+++ +.+|..|+||||+|+..|+.  .+++.|++.|.+ 
T Consensus       173 Ll~~g~~-~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~-~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d-  249 (471)
T PHA03095        173 LIDAGAD-VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDP-AATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS-  249 (471)
T ss_pred             HHHcCCC-CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC-
Confidence            9998554 455589999999999875  7899999999999998 67799999999999999875  688899999988 


Q ss_pred             ccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCccc
Q 007741          293 VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  364 (591)
Q Consensus       293 ~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  364 (591)
                      ++.+|..|+||||+|+..|+.+++++|++ .|+|++.+|..|+||||+|+..+    +.++++.|++.++..
T Consensus       250 in~~d~~g~TpLh~A~~~~~~~~v~~LL~-~gad~n~~~~~g~tpl~~A~~~~----~~~~v~~LL~~~~~~  316 (471)
T PHA03095        250 INARNRYGQTPLHYAAVFNNPRACRRLIA-LGADINAVSSDGNTPLSLMVRNN----NGRAVRAALAKNPSA  316 (471)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhC----CHHHHHHHHHhCCCH
Confidence            89999999999999999999999999999 49999999999999999999999    889999999988764

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.8e-36  Score=317.24  Aligned_cols=287  Identities=17%  Similarity=0.212  Sum_probs=223.7

Q ss_pred             cchhhhccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCc-
Q 007741           63 KKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGH-  141 (591)
Q Consensus        63 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~-  141 (591)
                      ........|.+|.||||+|+..|+.++++.||+.                      ++.++.+|..|.||||+|+..++ 
T Consensus        61 ~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~----------------------GAdin~~d~~g~TpLh~A~~~~~~  118 (446)
T PHA02946         61 RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTH----------------------GADPNACDKQHKTPLYYLSGTDDE  118 (446)
T ss_pred             CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC----------------------cCCCCCCCCCCCCHHHHHHHcCCc
Confidence            3444456788899999999999999999999986                      67788889999999999887664 


Q ss_pred             -HHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC--CHHHHHHHH
Q 007741          142 -IEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG--HTAVVNELL  218 (591)
Q Consensus       142 -~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~LL  218 (591)
                       .+++++|+++|++.+ ...|..|.|||| |+..|+.++++.|++.|+++ +..|..|+||||+|+..+  +.+++++|+
T Consensus       119 ~~e~v~lLl~~Gadin-~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll  195 (446)
T PHA02946        119 VIERINLLVQYGAKIN-NSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMM  195 (446)
T ss_pred             hHHHHHHHHHcCCCcc-cccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHH
Confidence             788999998876543 235778899997 66778899999999998887 667888999999887654  468888888


Q ss_pred             hcCCCcceecCCCCCcHHHHHHHcC--CHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCC-HHHHHHHHHcCccc---
Q 007741          219 SKDGGLLEISRSNGKNALHFAARQG--HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS-CEVVKLLLEADAAI---  292 (591)
Q Consensus       219 ~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~~~~~~---  292 (591)
                      ++ +.+++..|.+|.||||+|+..|  +.+++++|++ ++++ +.+|..|+||||+|++.++ .+++++|+++|+..   
T Consensus       196 ~~-Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadi-n~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~  272 (446)
T PHA02946        196 KL-GISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDV-NKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQ  272 (446)
T ss_pred             Hc-CCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCC-CCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCc
Confidence            87 5667788889999999999875  7888888885 7776 6778899999999998877 47888888877531   


Q ss_pred             ----------------ccCC-CCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHH
Q 007741          293 ----------------VMLP-DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKD  355 (591)
Q Consensus       293 ----------------~~~~-d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~  355 (591)
                                      ++.. +..|.||||+|+..|+.+++++|+++ |       ..|+||||+|+..+    ..++++
T Consensus       273 ~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~-~-------~~~~t~L~~A~~~~----~~~~v~  340 (446)
T PHA02946        273 TVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDN-D-------IICEDAMYYAVLSE----YETMVD  340 (446)
T ss_pred             HHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHC-C-------CccccHHHHHHHhC----HHHHHH
Confidence                            1111 23577999999999999999999985 3       35789999999888    888999


Q ss_pred             HHHhcCcccccccCCchHHhhhhhhhhhhhhhhHH
Q 007741          356 CLARCGAVRANELNQPRDELRKTVTQIKKDVHTQL  390 (591)
Q Consensus       356 ~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l  390 (591)
                      +|+.+|+..... +...+.+..+...-..++.+.+
T Consensus       341 ~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~l  374 (446)
T PHA02946        341 YLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKL  374 (446)
T ss_pred             HHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHH
Confidence            999999886653 4455566655555555544444

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5e-36  Score=318.55  Aligned_cols=273  Identities=24%  Similarity=0.319  Sum_probs=239.9

Q ss_pred             cHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCc
Q 007741           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKE  155 (591)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~  155 (591)
                      ..|+.|+..|+.+.++.|++..                     +..++..+..|.||||.|++.|+.++|++|+++|++ 
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~---------------------~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~-   60 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNK---------------------GNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD-   60 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcC---------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            4688999999999999999753                     445677888999999999999999999999998865 


Q ss_pred             cCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCc----------------------ccCCCCCCCHHHHHHHcCCHHH
Q 007741          156 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS----------------------QTTGPSNATPLVSAATRGHTAV  213 (591)
Q Consensus       156 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~----------------------~~~~~~g~tpL~~A~~~g~~~~  213 (591)
                       ++..+..|.||||.|+..|+.+++++|+++|++..                      +..+..|.||||+|+..|+.++
T Consensus        61 -~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~  139 (434)
T PHA02874         61 -INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLES  139 (434)
T ss_pred             -CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHH
Confidence             46678889999999999999999999999876531                      3467789999999999999999


Q ss_pred             HHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccc
Q 007741          214 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV  293 (591)
Q Consensus       214 v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~  293 (591)
                      +++|+++ +.+++..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.|++ +
T Consensus       140 v~~Ll~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~-i  216 (434)
T PHA02874        140 IKMLFEY-GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGESPLHNAAEYGDYACIKLLIDHGNH-I  216 (434)
T ss_pred             HHHHHhC-CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-C
Confidence            9999988 5667888999999999999999999999999999988 66799999999999999999999999999998 6


Q ss_pred             cCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccccccCCchH
Q 007741          294 MLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRD  373 (591)
Q Consensus       294 ~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~  373 (591)
                      +.++..|.||||+|+..++ +.+++|+.  |++++.+|..|+||||+|+..+.   ..+++++|+..|++.....+....
T Consensus       217 ~~~~~~g~TpL~~A~~~~~-~~i~~Ll~--~~~in~~d~~G~TpLh~A~~~~~---~~~iv~~Ll~~gad~n~~d~~g~T  290 (434)
T PHA02874        217 MNKCKNGFTPLHNAIIHNR-SAIELLIN--NASINDQDIDGSTPLHHAINPPC---DIDIIDILLYHKADISIKDNKGEN  290 (434)
T ss_pred             cCCCCCCCCHHHHHHHCCh-HHHHHHHc--CCCCCCcCCCCCCHHHHHHhcCC---cHHHHHHHHHCcCCCCCCCCCCCC
Confidence            7889999999999999876 56777774  79999999999999999997642   568999999999998777766666


Q ss_pred             Hhhhhhh
Q 007741          374 ELRKTVT  380 (591)
Q Consensus       374 ~l~~~~~  380 (591)
                      ++..+..
T Consensus       291 pL~~A~~  297 (434)
T PHA02874        291 PIDTAFK  297 (434)
T ss_pred             HHHHHHH
Confidence            6665543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=4.8e-36  Score=325.46  Aligned_cols=267  Identities=19%  Similarity=0.148  Sum_probs=225.1

Q ss_pred             CCCCCcHhHHHHHc--CCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCc--HHHHH
Q 007741           71 GRHNDTELHLAAQR--GDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGH--IEVVN  146 (591)
Q Consensus        71 ~~~g~t~Lh~Aa~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~--~~~v~  146 (591)
                      +..|.||||.|+..  ++.+++++|++.                      ++.++.+|..|.||||+|+..|+  .++|+
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~----------------------GADVN~kD~~G~TPLH~Aa~~g~~~~eIVk  231 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNN----------------------GVNVNLQNNHLITPLHTYLITGNVCASVIK  231 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHc----------------------CCCCCCCCCCCCCHHHHHHHcCCCCHHHHH
Confidence            77899999998654  678999999986                      77899999999999999999995  59999


Q ss_pred             HHHhcCCCccCccCCCCCChHHHHH-------------------------------------HHhCcHHHHHHHHhCCCC
Q 007741          147 ELLKYSTKEGLTRKNRSGFDPLHIA-------------------------------------AVQGHHAIVQVLLDHDPS  189 (591)
Q Consensus       147 ~Ll~~~~~~~~~~~~~~g~t~Lh~A-------------------------------------~~~g~~~iv~~Ll~~~~~  189 (591)
                      +|+++|++  ++.+|..|+||||.|                                     +..|+.++++.|+++|++
T Consensus       232 lLLe~GAD--VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd  309 (764)
T PHA02716        232 KIIELGGD--MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK  309 (764)
T ss_pred             HHHHcCCC--CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc
Confidence            99998865  567889999999975                                     345788999999999999


Q ss_pred             CcccCCCCCCCHHHHHHH--cCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHH--------------cCCHHHHHHHHh
Q 007741          190 LSQTTGPSNATPLVSAAT--RGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR--------------QGHVDVVKALLS  253 (591)
Q Consensus       190 ~~~~~~~~g~tpL~~A~~--~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~--------------~g~~~~v~~Ll~  253 (591)
                      + +..|..|+||||+|+.  .++.+++++|+++ +.+++..|..|.||||+|+.              .++.+++++|++
T Consensus       310 I-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~-GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~  387 (764)
T PHA02716        310 L-HYKDSAGRTCLHQYILRHNISTDIIKLLHEY-GNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLIS  387 (764)
T ss_pred             e-eccCCCCCCHHHHHHHHhCCCchHHHHHHHc-CCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHH
Confidence            7 5678999999999864  4689999999988 56788899999999999875              378999999999


Q ss_pred             cCcccccccCCCCCcHHHH----HHhCCCHHHHHHHHHcCcc--------------------------------------
Q 007741          254 KDPQLARRTDKKGQTALHM----AVKGQSCEVVKLLLEADAA--------------------------------------  291 (591)
Q Consensus       254 ~~~~~~~~~d~~g~t~Lh~----A~~~~~~~~v~~Ll~~~~~--------------------------------------  291 (591)
                      +|+++ +.+|..|+||||.    |...++.+++++|++.+..                                      
T Consensus       388 ~GADI-n~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~  466 (764)
T PHA02716        388 LGADI-TAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTD  466 (764)
T ss_pred             CCCCC-CCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhh
Confidence            99998 7789999999994    2345778899988875421                                      


Q ss_pred             ----------------------cccCCCCCCCcHHHHHHHcCcH-----HHHHHHhcCCCCCcccccCCCCCHHHHHhhC
Q 007741          292 ----------------------IVMLPDKFGNTALHVATRKKRT-----EIVTELLSLPDTNVNALTRDHKTALDIAEGL  344 (591)
Q Consensus       292 ----------------------~~~~~d~~g~T~Lh~A~~~g~~-----~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~  344 (591)
                                            .++..|..|+||||+|+..|+.     +++++|++ .|+|+|.+|++|+||||+|.+.
T Consensus       467 ~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~-~GADIN~~d~~G~TPLh~A~~~  545 (764)
T PHA02716        467 EYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLS-IQYNINIPTKNGVTPLMLTMRN  545 (764)
T ss_pred             hhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHc
Confidence                                  0244577899999999999877     45599998 5999999999999999999998


Q ss_pred             CCC-hhhHHHHHHHHhcCcccc
Q 007741          345 PSS-EEASEIKDCLARCGAVRA  365 (591)
Q Consensus       345 ~~~-~~~~~i~~~L~~~ga~~~  365 (591)
                      ++. ....++++.|++.|+...
T Consensus       546 g~~~~~~~eIvk~LL~~ga~~~  567 (764)
T PHA02716        546 NRLSGHQWYIVKNILDKRPNVD  567 (764)
T ss_pred             CCccccHHHHHHHHHhcCCCcc
Confidence            843 224589999999988643

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.9e-35  Score=310.60  Aligned_cols=277  Identities=19%  Similarity=0.230  Sum_probs=232.0

Q ss_pred             CCCcHhHHHHH--cCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHh
Q 007741           73 HNDTELHLAAQ--RGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLK  150 (591)
Q Consensus        73 ~g~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~  150 (591)
                      .+.++||.++.  .++.++++.|++.                      +..+|.+|.+|.||||+|+..|+.++|++|++
T Consensus        36 g~~~~Lh~~~~~~~~~~~iv~~Ll~~----------------------Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~   93 (446)
T PHA02946         36 GNYHILHAYCGIKGLDERFVEELLHR----------------------GYSPNETDDDGNYPLHIASKINNNRIVAMLLT   93 (446)
T ss_pred             CCChHHHHHHHhcCCCHHHHHHHHHC----------------------cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            34689998764  4578999999986                      77799999999999999999999999999999


Q ss_pred             cCCCccCccCCCCCChHHHHHHHhC--cHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceec
Q 007741          151 YSTKEGLTRKNRSGFDPLHIAAVQG--HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS  228 (591)
Q Consensus       151 ~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~  228 (591)
                      +|++  ++.+|..|.||||+|+..+  ..+++++|+++|+++....+..|.|||| |+..|+.+++++|++. +.+++..
T Consensus        94 ~GAd--in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~-gad~~~~  169 (446)
T PHA02946         94 HGAD--PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSI-GFEARIV  169 (446)
T ss_pred             CcCC--CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhc-ccccccc
Confidence            8765  5678999999999999876  4899999999999997677889999997 6777999999999987 5677889


Q ss_pred             CCCCCcHHHHHHHcC--CHHHHHHHHhcCcccccccCCCCCcHHHHHHhCC--CHHHHHHHHHcCcccccCCCCCCCcHH
Q 007741          229 RSNGKNALHFAARQG--HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ--SCEVVKLLLEADAAIVMLPDKFGNTAL  304 (591)
Q Consensus       229 ~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~--~~~~v~~Ll~~~~~~~~~~d~~g~T~L  304 (591)
                      |..|+||||.|+..+  +.+++++|++.|+++ +..|.+|+||||+|+.++  +.+++++|++ +++ ++.+|..|+|||
T Consensus       170 d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad-in~~d~~G~TpL  246 (446)
T PHA02946        170 DKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD-VNKQNKFGDSPL  246 (446)
T ss_pred             CCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC-CCCCCCCCCCHH
Confidence            999999999998754  479999999999998 677999999999999876  8899999985 776 899999999999


Q ss_pred             HHHHHcCc-HHHHHHHhcCCCCCc--------------------ccc-cCCCCCHHHHHhhCCCChhhHHHHHHHHhcCc
Q 007741          305 HVATRKKR-TEIVTELLSLPDTNV--------------------NAL-TRDHKTALDIAEGLPSSEEASEIKDCLARCGA  362 (591)
Q Consensus       305 h~A~~~g~-~~iv~~Ll~~~g~d~--------------------~~~-d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga  362 (591)
                      |+|++.++ .+++++|+++ |+++                    +.. +..|+||||+|+..+    +.+++++|++.|+
T Consensus       247 h~A~~~~~~~~~~~~Ll~~-g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g----~~eivk~Ll~~~~  321 (446)
T PHA02946        247 TLLIKTLSPAHLINKLLST-SNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVG----SIRCVKYLLDNDI  321 (446)
T ss_pred             HHHHHhCChHHHHHHHHhC-CCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcC----CHHHHHHHHHCCC
Confidence            99999988 4889999885 4432                    222 235789999999999    8999999999886


Q ss_pred             ccccccCCchHHhhhhhhhhhhhhhhHH
Q 007741          363 VRANELNQPRDELRKTVTQIKKDVHTQL  390 (591)
Q Consensus       363 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l  390 (591)
                      .       ..+.+..+......++.+.+
T Consensus       322 ~-------~~t~L~~A~~~~~~~~v~~L  342 (446)
T PHA02946        322 I-------CEDAMYYAVLSEYETMVDYL  342 (446)
T ss_pred             c-------cccHHHHHHHhCHHHHHHHH
Confidence            3       23455555544444444444

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.8e-35  Score=309.60  Aligned_cols=244  Identities=22%  Similarity=0.208  Sum_probs=221.8

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCC
Q 007741           74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYST  153 (591)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~  153 (591)
                      ++++||.|+..|+.+++++|++.                      +..++..+..|.||||+|+..|+.+++++|+++|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~----------------------g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga   59 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDI----------------------GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGA   59 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHC----------------------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            45899999999999999999986                      66788888899999999999999999999999886


Q ss_pred             CccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCC
Q 007741          154 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGK  233 (591)
Q Consensus       154 ~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~  233 (591)
                      ..  +..+..+.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++ +.+++..+..|.
T Consensus        60 ~~--~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~  136 (413)
T PHA02875         60 IP--DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR-GADPDIPNTDKF  136 (413)
T ss_pred             Cc--cccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCC
Confidence            54  455677899999999999999999999999988777778899999999999999999999998 566788899999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCC-CcHHHHHHHcCc
Q 007741          234 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG-NTALHVATRKKR  312 (591)
Q Consensus       234 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g-~T~Lh~A~~~g~  312 (591)
                      ||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..|+.+++++|++.|++ ++..+..| .||+|+|+..|+
T Consensus       137 tpLh~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~~~  214 (413)
T PHA02875        137 SPLHLAVMMGDIKGIELLIDHKACL-DIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN-IDYFGKNGCVAALCYAIENNK  214 (413)
T ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCcCCCCCCchHHHHHHHcCC
Confidence            9999999999999999999999988 67799999999999999999999999999998 66777766 589999999999


Q ss_pred             HHHHHHHhcCCCCCcccc---cCCCCCHHHHHhhCC
Q 007741          313 TEIVTELLSLPDTNVNAL---TRDHKTALDIAEGLP  345 (591)
Q Consensus       313 ~~iv~~Ll~~~g~d~~~~---d~~G~t~L~~A~~~~  345 (591)
                      .+++++|++ .|+|++..   +..|.||++++....
T Consensus       215 ~~iv~~Ll~-~gad~n~~~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        215 IDIVRLFIK-RGADCNIMFMIEGEECTILDMICNMC  249 (413)
T ss_pred             HHHHHHHHH-CCcCcchHhhcCCCchHHHHHHHhhc
Confidence            999999999 59998875   678999999987543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.3e-35  Score=328.54  Aligned_cols=281  Identities=22%  Similarity=0.206  Sum_probs=194.3

Q ss_pred             hhhccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHH
Q 007741           66 VKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVV  145 (591)
Q Consensus        66 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v  145 (591)
                      .....|..|.||||.||+.|+.++|++|++.                      ++.++..+..|.||||+|+..|+.+++
T Consensus       170 dvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~----------------------Gad~n~~~~~g~t~L~~A~~~~~~~iv  227 (682)
T PHA02876        170 DVNAKDIYCITPIHYAAERGNAKMVNLLLSY----------------------GADVNIIALDDLSVLECAVDSKNIDTI  227 (682)
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC----------------------CCCcCccCCCCCCHHHHHHHcCCHHHH
Confidence            3445678899999999999999999999986                      555666666777777777777777777


Q ss_pred             HHHHhcCCC---------------------------ccCccCCCCCChHHHHHHHhCcH-HHHHHHHhCCCCCcccCCCC
Q 007741          146 NELLKYSTK---------------------------EGLTRKNRSGFDPLHIAAVQGHH-AIVQVLLDHDPSLSQTTGPS  197 (591)
Q Consensus       146 ~~Ll~~~~~---------------------------~~~~~~~~~g~t~Lh~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~  197 (591)
                      ++|++.+..                           .+++..+..|.||||+|+..|+. ++++.|++.|+++ +..|..
T Consensus       228 k~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~  306 (682)
T PHA02876        228 KAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIK  306 (682)
T ss_pred             HHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCC
Confidence            666654322                           12344555677777777777765 4777777777766 455667


Q ss_pred             CCCHHHHHHHcC-CHHHHHHHHhcCCCcceecCCCCCcHHHHHHHc-CCHHHHHHHHhcCcccccccCCCCCcHHHHHHh
Q 007741          198 NATPLVSAATRG-HTAVVNELLSKDGGLLEISRSNGKNALHFAARQ-GHVDVVKALLSKDPQLARRTDKKGQTALHMAVK  275 (591)
Q Consensus       198 g~tpL~~A~~~g-~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  275 (591)
                      |.||||+|+..| +.++++.|+.. +..++..|..|.||||+|+.. ++.++++.|++.|+++ +.+|..|+||||+|+.
T Consensus       307 g~TpLh~Aa~~g~~~~~v~~Ll~~-gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa~  384 (682)
T PHA02876        307 GETPLYLMAKNGYDTENIRTLIML-GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAV  384 (682)
T ss_pred             CCCHHHHHHHhCCCHHHHHHHHHc-CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHHH
Confidence            777777777777 46777777766 445666677777777777764 4567777777777776 5567777777777777


Q ss_pred             CCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCc-HHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHH
Q 007741          276 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR-TEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIK  354 (591)
Q Consensus       276 ~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~-~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~  354 (591)
                      .|+.+++++|+++|++ ++..+..|.||||+|+..++ ..++++|++ .|+++|.+|..|+||||+|+..+.   ..+++
T Consensus       385 ~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d~~G~TpLh~Aa~~~~---~~~iv  459 (682)
T PHA02876        385 RNNVVIINTLLDYGAD-IEALSQKIGTALHFALCGTNPYMSVKTLID-RGANVNSKNKDLSTPLHYACKKNC---KLDVI  459 (682)
T ss_pred             cCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCCCCCChHHHHHHHhCC---cHHHH
Confidence            7777777777777776 56667777777777776554 345666666 477777777777777777776431   35677


Q ss_pred             HHHHhcCcccccccCCchHHhh
Q 007741          355 DCLARCGAVRANELNQPRDELR  376 (591)
Q Consensus       355 ~~L~~~ga~~~~~~~~~~~~l~  376 (591)
                      ++|++.|++..........++.
T Consensus       460 ~lLl~~Gad~n~~d~~g~tpl~  481 (682)
T PHA02876        460 EMLLDNGADVNAINIQNQYPLL  481 (682)
T ss_pred             HHHHHCCCCCCCCCCCCCCHHH
Confidence            7777777766555444444443

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.9e-35  Score=288.01  Aligned_cols=235  Identities=19%  Similarity=0.198  Sum_probs=204.4

Q ss_pred             cCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCC
Q 007741           84 RGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRS  163 (591)
Q Consensus        84 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~  163 (591)
                      .++.+++++|++.                      ++  +..|.+|.||||+|+..|+.++++.|++.++..+  ..  +
T Consensus         9 ~~~~~~~~~Lis~----------------------~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n--~~--d   60 (284)
T PHA02791          9 WKSKQLKSFLSSK----------------------DA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKN--LL--E   60 (284)
T ss_pred             cCHHHHHHHHHhC----------------------CC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc--CC--C
Confidence            4678888888874                      22  4578999999999999999999999999876543  33  4


Q ss_pred             CChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCC-CcHHHHHHHc
Q 007741          164 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG-KNALHFAARQ  242 (591)
Q Consensus       164 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g-~tpLh~A~~~  242 (591)
                      |.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++++ .+++..+..| .||||+|+..
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~g-adin~~~~~g~~TpL~~Aa~~  138 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAVML  138 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcCccCCCCCcHHHHHHHHc
Confidence            789999999999999999999999987 567889999999999999999999999984 5566677777 5899999999


Q ss_pred             CCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcH-HHHHHHcCcHHHHHHHhc
Q 007741          243 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA-LHVATRKKRTEIVTELLS  321 (591)
Q Consensus       243 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~-Lh~A~~~g~~~iv~~Ll~  321 (591)
                      |+.+++++|++++++..+  ...|.||||+|+.+|+.+++++|+++|++ ++.+|..|.|| ||+|+..|+.+++++|++
T Consensus       139 g~~eivk~LL~~~~~~~d--~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~  215 (284)
T PHA02791        139 NDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDLEMLQALFK  215 (284)
T ss_pred             CCHHHHHHHHhcCCcccc--cccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHH
Confidence            999999999999875421  13589999999999999999999999998 78899999987 999999999999999999


Q ss_pred             CCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcc
Q 007741          322 LPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  363 (591)
Q Consensus       322 ~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~  363 (591)
                      + |++++.+|.+| ++|      +    ..|++++|++..+.
T Consensus       216 ~-Ga~in~~~~~~-~~l------~----~~e~~~~ll~~~~~  245 (284)
T PHA02791        216 Y-DINIYSVNLEN-VLL------D----DAEIAKMIIEKHVE  245 (284)
T ss_pred             C-CCCCccCcccC-ccC------C----CHHHHHHHHHhhhh
Confidence            5 99999999965 665      3    66799999987664

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.1e-35  Score=316.19  Aligned_cols=254  Identities=23%  Similarity=0.235  Sum_probs=213.7

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHh
Q 007741           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLK  150 (591)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~  150 (591)
                      +..+.||||.||+.|+.++|+.|++.                      ++.++.+|..|.||||+||..|+.+++++|++
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~----------------------gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~   91 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTR----------------------GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIR   91 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHC----------------------CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHH
Confidence            45678999999999999999999986                      67789999999999999999999999999999


Q ss_pred             cCCCccCccCCCCCChHHHHHHHhCcHH---------------------------------HHHHHHhCCCCCcccCCCC
Q 007741          151 YSTKEGLTRKNRSGFDPLHIAAVQGHHA---------------------------------IVQVLLDHDPSLSQTTGPS  197 (591)
Q Consensus       151 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~---------------------------------iv~~Ll~~~~~~~~~~~~~  197 (591)
                      .+.....    ..+.+|++.|+..++.+                                 ++++|+++|+++ +..+..
T Consensus        92 ~~~~~~~----~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~  166 (477)
T PHA02878         92 SINKCSV----FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRH  166 (477)
T ss_pred             HHhcccc----ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCC
Confidence            7654322    45778999999888765                                 455555566666 344555


Q ss_pred             -CCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhC
Q 007741          198 -NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG  276 (591)
Q Consensus       198 -g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  276 (591)
                       |.||||+|+..|+.+++++|+++ +.+++..|..|.||||.|+..|+.+++++|++.|+++ +.+|..|+||||+|+..
T Consensus       167 ~g~tpLh~A~~~~~~~iv~~Ll~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~  244 (477)
T PHA02878        167 KGNTALHYATENKDQRLTELLLSY-GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGY  244 (477)
T ss_pred             CCCCHHHHHHhCCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHh
Confidence             99999999999999999999988 5567888999999999999999999999999999998 67799999999999975


Q ss_pred             -CCHHHHHHHHHcCcccccCCCC-CCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHH
Q 007741          277 -QSCEVVKLLLEADAAIVMLPDK-FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIK  354 (591)
Q Consensus       277 -~~~~~v~~Ll~~~~~~~~~~d~-~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~  354 (591)
                       ++.+++++|+++|++ ++.++. .|.||||+|  .++.+++++|++ .|+|+|.+|..|+||||+|+....   ..++.
T Consensus       245 ~~~~~iv~~Ll~~gad-vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~-~gadin~~d~~g~TpL~~A~~~~~---~~~~~  317 (477)
T PHA02878        245 CKDYDILKLLLEHGVD-VNAKSYILGLTALHSS--IKSERKLKLLLE-YGADINSLNSYKLTPLSSAVKQYL---CINIG  317 (477)
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCCCHHHHH--ccCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHHcC---ccchH
Confidence             789999999999998 666665 799999999  567899999999 599999999999999999987431   23445


Q ss_pred             HHHHhc
Q 007741          355 DCLARC  360 (591)
Q Consensus       355 ~~L~~~  360 (591)
                      +.|...
T Consensus       318 ~~li~~  323 (477)
T PHA02878        318 RILISN  323 (477)
T ss_pred             HHHHHH
Confidence            555544

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=8.9e-36  Score=309.20  Aligned_cols=258  Identities=27%  Similarity=0.367  Sum_probs=229.5

Q ss_pred             hhhccchhhhccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHH
Q 007741           59 QAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAAD  138 (591)
Q Consensus        59 ~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~  138 (591)
                      ...+.+...+..|++|.||||+||+.++.|..+.|++.                      ++.....|.+|.+|+|.|++
T Consensus       139 ~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~----------------------~a~~~K~~~~~~~~iH~aa~  196 (929)
T KOG0510|consen  139 LLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINK----------------------GADPCKSDIDGNFPIHEAAR  196 (929)
T ss_pred             HHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhc----------------------CCCCCcccCcCCchHHHHHH
Confidence            34445566677888899999999999999976777765                      66788889999999999999


Q ss_pred             hCcHHHHHHHHhc---CCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCc--------------ccCCCCCCCH
Q 007741          139 KGHIEVVNELLKY---STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS--------------QTTGPSNATP  201 (591)
Q Consensus       139 ~g~~~~v~~Ll~~---~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~--------------~~~~~~g~tp  201 (591)
                      +|..|+.+..+.+   .....++..+..|.||||.|+..|+.++++.+|+.+....              +..|.+|.||
T Consensus       197 s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tp  276 (929)
T KOG0510|consen  197 SGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTP  276 (929)
T ss_pred             hcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCch
Confidence            9999999999982   2334567788899999999999999999999999976543              3458899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHh-cCcccccccCCCCCcHHHHHHhCCCHH
Q 007741          202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS-KDPQLARRTDKKGQTALHMAVKGQSCE  280 (591)
Q Consensus       202 L~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~  280 (591)
                      ||+|+++|+.+.+..|+.. +.+++.++.++.||||.||+.|+.+.|+.||+ .+....+..|-.|.||||.|+++|+..
T Consensus       277 LH~a~r~G~~~svd~Ll~~-Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~  355 (929)
T KOG0510|consen  277 LHYAARQGGPESVDNLLGF-GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDR  355 (929)
T ss_pred             HHHHHHcCChhHHHHHHHc-CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHH
Confidence            9999999999999999988 66788899999999999999999999999999 666667888999999999999999999


Q ss_pred             HHHHHHHcCccccc--CCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHH
Q 007741          281 VVKLLLEADAAIVM--LPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI  340 (591)
Q Consensus       281 ~v~~Ll~~~~~~~~--~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~  340 (591)
                      +++.|++.|+...+  ..|.+|+||||+|+..|+..+|+.|+.+ |+++..+|+.|.+++|+
T Consensus       356 v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~-Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  356 VVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISH-GADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHc-CCceeeccccccccccc
Confidence            99999999998776  4599999999999999999999999995 99999999999999996

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-34  Score=310.67  Aligned_cols=280  Identities=21%  Similarity=0.248  Sum_probs=247.5

Q ss_pred             HHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhC---cHHHHHHHHhcCCCc
Q 007741           79 HLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKG---HIEVVNELLKYSTKE  155 (591)
Q Consensus        79 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g---~~~~v~~Ll~~~~~~  155 (591)
                      ..++..++.++++.|++.                      ++.++..+..|.||||+|+..|   +.+++++|++.|++ 
T Consensus        19 ~~~~~~~~~~~v~~Ll~~----------------------ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad-   75 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAA----------------------GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD-   75 (471)
T ss_pred             HHcCCCCCHHHHHHHHHc----------------------CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC-
Confidence            567888999999999986                      7778999999999999999999   99999999998865 


Q ss_pred             cCccCCCCCChHHHHHHHhC-cHHHHHHHHhCCCCCcccCCCCCCCHHHHHH--HcCCHHHHHHHHhcCCCcceecCCCC
Q 007741          156 GLTRKNRSGFDPLHIAAVQG-HHAIVQVLLDHDPSLSQTTGPSNATPLVSAA--TRGHTAVVNELLSKDGGLLEISRSNG  232 (591)
Q Consensus       156 ~~~~~~~~g~t~Lh~A~~~g-~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~LL~~~~~~~~~~~~~g  232 (591)
                       ++.++..|.||||+|+..| +.+++++|+++|+++ +..+..|.||||+|+  ..++.+++++|+++ +.+++..|..|
T Consensus        76 -in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~-gad~~~~d~~g  152 (471)
T PHA03095         76 -VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRK-GADVNALDLYG  152 (471)
T ss_pred             -CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHc-CCCCCccCCCC
Confidence             5677889999999999999 599999999999998 678889999999999  56689999999998 56678889999


Q ss_pred             CcHHHHHHHcC--CHHHHHHHHhcCcccccccCCCCCcHHHHHHhC--CCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 007741          233 KNALHFAARQG--HVDVVKALLSKDPQLARRTDKKGQTALHMAVKG--QSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  308 (591)
Q Consensus       233 ~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~--~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~  308 (591)
                      .||||+|+..+  +.+++++|++.|+++... |..|+||||+|+..  ++.++++.|++.|++ ++.+|..|+||||+|+
T Consensus       153 ~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa  230 (471)
T PHA03095        153 MTPLAVLLKSRNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATDMLGNTPLHSMA  230 (471)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence            99999999876  689999999999998554 99999999999864  788999999999998 8999999999999999


Q ss_pred             HcCcH--HHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccccccCCchHHhhhhhhhhhhhh
Q 007741          309 RKKRT--EIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDV  386 (591)
Q Consensus       309 ~~g~~--~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~  386 (591)
                      ..|+.  .+++.|+. .|+++|.+|..|+||||+|+..+    ..+++++|++.|++.........+++..+......++
T Consensus       231 ~~~~~~~~~v~~ll~-~g~din~~d~~g~TpLh~A~~~~----~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~  305 (471)
T PHA03095        231 TGSSCKRSLVLPLLI-AGISINARNRYGQTPLHYAAVFN----NPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRA  305 (471)
T ss_pred             hcCCchHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcC----CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHH
Confidence            99875  57888888 59999999999999999999998    8899999999999988777777777777766655555


Q ss_pred             hhHHH
Q 007741          387 HTQLE  391 (591)
Q Consensus       387 ~~~l~  391 (591)
                      .+.+-
T Consensus       306 v~~LL  310 (471)
T PHA03095        306 VRAAL  310 (471)
T ss_pred             HHHHH
Confidence            55443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-35  Score=254.33  Aligned_cols=210  Identities=30%  Similarity=0.405  Sum_probs=187.3

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc
Q 007741          129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  208 (591)
Q Consensus       129 g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  208 (591)
                      +.++.+.+++.....-|+.|++...+......|.+|+||||+||..|+.+++++|+....-..+..|..|+||||.|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            46788888888888889999886543333444559999999999999999999999643333356688999999999999


Q ss_pred             CCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHc
Q 007741          209 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA  288 (591)
Q Consensus       209 g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  288 (591)
                      |+.++|+.|+.+.+.+++..+..|.|+||+|+..|+.+++++|++.|+.+ +.+|..|+||||.|+.-|+.+++++|+..
T Consensus        83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~~  161 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLISQ  161 (226)
T ss_pred             CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHHhc
Confidence            99999999999988889999999999999999999999999999999887 78899999999999999999999999999


Q ss_pred             CcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 007741          289 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  342 (591)
Q Consensus       289 ~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~  342 (591)
                      ++. +|.+|+.|+||||.|...|+.++..+|++. |+|++..|++| ||+..|.
T Consensus       162 ~a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~~-gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  162 GAP-LNTQDKYGFTPLHHALAEGHPDVAVLLVRA-GADTDREDKEG-TALRIAC  212 (226)
T ss_pred             CCC-CCcccccCccHHHHHHhccCchHHHHHHHh-ccceeeccccC-chHHHHH
Confidence            987 899999999999999999999999999995 89999999999 9988875

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-35  Score=253.71  Aligned_cols=211  Identities=31%  Similarity=0.396  Sum_probs=188.2

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCC
Q 007741           74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYST  153 (591)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~  153 (591)
                      +.++.+.++.......++.+++..+                    +.+....|.+|+||||+||..|+.++|++|++ ..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~--------------------kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLls-q~   61 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDP--------------------KSLNARDDQDGRTPLHWACSFGHVEIVYFLLS-QP   61 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcCh--------------------hhhhccccccCCceeeeeeecCchhHHHHHHh-cC
Confidence            4578888999999999999998643                    23333344599999999999999999999998 35


Q ss_pred             CccCccCCCCCChHHHHHHHhCcHHHHHHHHhC-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCC
Q 007741          154 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG  232 (591)
Q Consensus       154 ~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g  232 (591)
                      +..++.+|..|+||||+||..|+.++|+.|+.+ ++++ +..+..|.||||||+.+|+.+++++|+++ ++.++++|..|
T Consensus        62 nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~-ga~i~~kD~~~  139 (226)
T KOG4412|consen   62 NVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEK-GALIRIKDKQG  139 (226)
T ss_pred             CCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhc-CCCCccccccc
Confidence            666788899999999999999999999999999 8887 77888999999999999999999999999 57889999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc
Q 007741          233 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  310 (591)
Q Consensus       233 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~  310 (591)
                      .||||.|+.-|..+++++|+..++.+ +..|+.|+||||.|...|+.++..+|+++|++ ....|+.| ||+-.|.-.
T Consensus       140 qtplHRAAavGklkvie~Li~~~a~~-n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd-~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  140 QTPLHRAAAVGKLKVIEYLISQGAPL-NTQDKYGFTPLHHALAEGHPDVAVLLVRAGAD-TDREDKEG-TALRIACNE  214 (226)
T ss_pred             CchhHHHHhccchhhHHHHHhcCCCC-CcccccCccHHHHHHhccCchHHHHHHHhccc-eeeccccC-chHHHHHHH
Confidence            99999999999999999999999877 78899999999999888999999999999998 78889988 998877643

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.5e-34  Score=281.97  Aligned_cols=216  Identities=18%  Similarity=0.208  Sum_probs=188.9

Q ss_pred             ccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHH
Q 007741           69 VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNEL  148 (591)
Q Consensus        69 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~L  148 (591)
                      ..|.+|.||||+|+..|+.++++.|++.                      ++..+..  +|.||||+|+..|+.++|++|
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~----------------------ga~~n~~--d~~TpLh~Aa~~g~~eiV~lL   80 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNA----------------------GALKNLL--ENEFPLHQAATLEDTKIVKIL   80 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHC----------------------cCCCcCC--CCCCHHHHHHHCCCHHHHHHH
Confidence            4688999999999999999999999986                      4444444  478999999999999999999


Q ss_pred             HhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCC-CCHHHHHHHcCCHHHHHHHHhcCCCccee
Q 007741          149 LKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN-ATPLVSAATRGHTAVVNELLSKDGGLLEI  227 (591)
Q Consensus       149 l~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~~v~~LL~~~~~~~~~  227 (591)
                      +++|++  ++.+|..|+||||+|+..|+.+++++|+++|+++. ..+..| .||||+|+..|+.+++++|+++++...+ 
T Consensus        81 L~~Gad--vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin-~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d-  156 (284)
T PHA02791         81 LFSGMD--DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD-  156 (284)
T ss_pred             HHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccc-
Confidence            998755  56788999999999999999999999999999984 455556 5899999999999999999998543321 


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcH-HHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHH
Q 007741          228 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA-LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV  306 (591)
Q Consensus       228 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~  306 (591)
                       ...|.||||+|+..|+.+++++|+++|+++ +..|..|.|| ||+|+.+|+.+++++|+++|++ ++.+|..| |+|  
T Consensus       157 -~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~-n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~-in~~~~~~-~~l--  230 (284)
T PHA02791        157 -LAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDLEMLQALFKYDIN-IYSVNLEN-VLL--  230 (284)
T ss_pred             -cccCccHHHHHHHcCCHHHHHHHHHCCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC-CccCcccC-ccC--
Confidence             135899999999999999999999999998 6678889987 9999999999999999999999 79988854 665  


Q ss_pred             HHHcCcHHHHHHHhcC
Q 007741          307 ATRKKRTEIVTELLSL  322 (591)
Q Consensus       307 A~~~g~~~iv~~Ll~~  322 (591)
                          ++.|++++||++
T Consensus       231 ----~~~e~~~~ll~~  242 (284)
T PHA02791        231 ----DDAEIAKMIIEK  242 (284)
T ss_pred             ----CCHHHHHHHHHh
Confidence                888999999985

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-33  Score=304.10  Aligned_cols=263  Identities=24%  Similarity=0.309  Sum_probs=235.2

Q ss_pred             cccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHH-----HHHhCcHHHHHHHHhCCCCCccc
Q 007741          119 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHI-----AAVQGHHAIVQVLLDHDPSLSQT  193 (591)
Q Consensus       119 ~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~-----A~~~g~~~iv~~Ll~~~~~~~~~  193 (591)
                      +...+..+..+.||||+|+..|+.++|++|+++|++  ++..+..|.||||+     |+..|+.+++++|+++|+++ +.
T Consensus        25 ~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~--~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~  101 (480)
T PHA03100         25 DDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD--INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NA  101 (480)
T ss_pred             CccchhhhcccchhhhhhhccCCHHHHHHHHHcCCC--CCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CC
Confidence            344666788999999999999999999999998865  46677889999999     99999999999999999998 78


Q ss_pred             CCCCCCCHHHHHH--HcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcC--CHHHHHHHHhcCcccccccCCCCCcH
Q 007741          194 TGPSNATPLVSAA--TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG--HVDVVKALLSKDPQLARRTDKKGQTA  269 (591)
Q Consensus       194 ~~~~g~tpL~~A~--~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~  269 (591)
                      .+..|.||||+|+  ..|+.+++++|+++ +.+++..+..|.||||+|+..|  +.+++++|+++|+++ +..|..|.||
T Consensus       102 ~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tp  179 (480)
T PHA03100        102 PDNNGITPLLYAISKKSNSYSIVEYLLDN-GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTP  179 (480)
T ss_pred             CCCCCCchhhHHHhcccChHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCH
Confidence            8899999999999  99999999999998 5667888999999999999999  999999999999998 6668899999


Q ss_pred             HHHHHhCCCHHHHHHHHHcCcccccCCCCCC------CcHHHHHHHcCc--HHHHHHHhcCCCCCcccccCCCCCHHHHH
Q 007741          270 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFG------NTALHVATRKKR--TEIVTELLSLPDTNVNALTRDHKTALDIA  341 (591)
Q Consensus       270 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g------~T~Lh~A~~~g~--~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A  341 (591)
                      ||+|+..|+.+++++|+++|++ ++..+..|      .||||.|+..|+  .+++++|++. |++++.+|..|.||||+|
T Consensus       180 L~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~-g~din~~d~~g~TpL~~A  257 (480)
T PHA03100        180 LHIAVEKGNIDVIKFLLDNGAD-INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY-GVPINIKDVYGFTPLHYA  257 (480)
T ss_pred             HHHHHHhCCHHHHHHHHHcCCC-ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc-CCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999998 77788888      999999999999  9999999994 999999999999999999


Q ss_pred             hhCCCChhhHHHHHHHHhcCcccccccCCchHHhhhhhhhhhhhhhhHHHH
Q 007741          342 EGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ  392 (591)
Q Consensus       342 ~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  392 (591)
                      +..+    +.+++++|++.|++.......+...+..+......++.+.+-+
T Consensus       258 ~~~~----~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~  304 (480)
T PHA03100        258 VYNN----NPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN  304 (480)
T ss_pred             HHcC----CHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            9999    8999999999999877666666667766665555555554443

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.7e-33  Score=310.84  Aligned_cols=288  Identities=22%  Similarity=0.257  Sum_probs=245.8

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCC
Q 007741           74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYST  153 (591)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~  153 (591)
                      ..++|+.|+..|+.++++.|++.                      ++.++.+|..|.||||+||..|+.++|++|+++|+
T Consensus       145 ~~~~l~~~i~~~~~~i~k~Ll~~----------------------Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Ga  202 (682)
T PHA02876        145 YMKLIKERIQQDELLIAEMLLEG----------------------GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGA  202 (682)
T ss_pred             hhHHHHHHHHCCcHHHHHHHHhC----------------------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Confidence            45789999999999999999987                      77899999999999999999999999999999886


Q ss_pred             CccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCc----------------------------ccCCCCCCCHHHHH
Q 007741          154 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS----------------------------QTTGPSNATPLVSA  205 (591)
Q Consensus       154 ~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~----------------------------~~~~~~g~tpL~~A  205 (591)
                      +  .+..+..|.||||.|+..|+.++++.|++.++++.                            +..+..|.||||+|
T Consensus       203 d--~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~A  280 (682)
T PHA02876        203 D--VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHA  280 (682)
T ss_pred             C--cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            6  46678889999999999999999988877655431                            34566799999999


Q ss_pred             HHcCCH-HHHHHHHhcCCCcceecCCCCCcHHHHHHHcC-CHHHHHHHHhcCcccccccCCCCCcHHHHHHhC-CCHHHH
Q 007741          206 ATRGHT-AVVNELLSKDGGLLEISRSNGKNALHFAARQG-HVDVVKALLSKDPQLARRTDKKGQTALHMAVKG-QSCEVV  282 (591)
Q Consensus       206 ~~~g~~-~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~-~~~~~v  282 (591)
                      +..|+. +++++|++. +.+++..|.+|.||||+|+..| +.++++.|+..|+++ +..|..|.||||+|+.. ++.+++
T Consensus       281 a~~~~~~~iv~lLl~~-gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv  358 (682)
T PHA02876        281 SQAPSLSRLVPKLLER-GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIV  358 (682)
T ss_pred             HhCCCHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHH
Confidence            999986 578888877 5667888999999999999999 599999999999998 67799999999999984 578899


Q ss_pred             HHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCc
Q 007741          283 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA  362 (591)
Q Consensus       283 ~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga  362 (591)
                      +.|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..+.   ...++++|++.|+
T Consensus       359 ~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~-~gad~~~~~~~g~T~Lh~A~~~~~---~~~~vk~Ll~~ga  433 (682)
T PHA02876        359 ITLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLD-YGADIEALSQKIGTALHFALCGTN---PYMSVKTLIDRGA  433 (682)
T ss_pred             HHHHHcCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCCchHHHHHHcCC---HHHHHHHHHhCCC
Confidence            999999998 88999999999999999999999999999 499999999999999999987552   4567889999999


Q ss_pred             ccccccCCchHHhhhhhhhh-hhhhhhHHHH
Q 007741          363 VRANELNQPRDELRKTVTQI-KKDVHTQLEQ  392 (591)
Q Consensus       363 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~l~~  392 (591)
                      +.........+++..+.... ..++.+.|-+
T Consensus       434 din~~d~~G~TpLh~Aa~~~~~~~iv~lLl~  464 (682)
T PHA02876        434 NVNSKNKDLSTPLHYACKKNCKLDVIEMLLD  464 (682)
T ss_pred             CCCcCCCCCChHHHHHHHhCCcHHHHHHHHH
Confidence            88777777778887766533 3344444433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3.6e-33  Score=303.13  Aligned_cols=282  Identities=18%  Similarity=0.172  Sum_probs=231.5

Q ss_pred             CCcHhHHH-----HHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhc-cccccc-CCCCCcHHHHHHH--hCcHHH
Q 007741           74 NDTELHLA-----AQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRS-SVVNEV-NELGETALFTAAD--KGHIEV  144 (591)
Q Consensus        74 g~t~Lh~A-----a~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-n~~g~TpL~~Aa~--~g~~~~  144 (591)
                      +..+++..     .+.++.+++++|++.                      + +++|.. |..|.||||.|+.  +++.++
T Consensus       137 d~~~~~~y~~al~~~~v~leiVk~LLe~----------------------G~ADIN~~~d~~G~TpLH~A~~n~~~~~eI  194 (764)
T PHA02716        137 DMDILYTYFNSPNTRGIDLDLIKYMVDV----------------------GIVNLNYVCKKTGYGILHAYLGNMYVDIDI  194 (764)
T ss_pred             cchHHHHHHhhhcccCCCHHHHHHHHHC----------------------CCCCcccccCCCCCcHHHHHHHhccCCHHH
Confidence            44555544     456899999999986                      5 678888 8999999999875  467899


Q ss_pred             HHHHHhcCCCccCccCCCCCChHHHHHHHhCc--HHHHHHHHhCCCCCcccCCCCCCCHHHHH-----------------
Q 007741          145 VNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH--HAIVQVLLDHDPSLSQTTGPSNATPLVSA-----------------  205 (591)
Q Consensus       145 v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A-----------------  205 (591)
                      +++|+++|++  ++.+|..|.||||+|+..|+  .+++++|+++|+++ +..+..|.||||+|                 
T Consensus       195 VklLLe~GAD--VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie  271 (764)
T PHA02716        195 LEWLCNNGVN--VNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIE  271 (764)
T ss_pred             HHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHH
Confidence            9999998755  67789999999999999995  59999999999998 66788999999975                 


Q ss_pred             --------------------HHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHH--cCCHHHHHHHHhcCcccccccC
Q 007741          206 --------------------ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR--QGHVDVVKALLSKDPQLARRTD  263 (591)
Q Consensus       206 --------------------~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~d  263 (591)
                                          +..|+.+++++|+++ +..++..|.+|+||||+|+.  .++.+++++|++.|+++ +.+|
T Consensus       272 ~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~-GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD  349 (764)
T PHA02716        272 SLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP-GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPD  349 (764)
T ss_pred             hccccccccchhhhHHHHHHHHcCCHHHHHHHHhC-CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCC
Confidence                                345778899999987 56688899999999999874  46899999999999998 7789


Q ss_pred             CCCCcHHHHHHh--------------CCCHHHHHHHHHcCcccccCCCCCCCcHHHH----HHHcCcHHHHHHHhcCC--
Q 007741          264 KKGQTALHMAVK--------------GQSCEVVKLLLEADAAIVMLPDKFGNTALHV----ATRKKRTEIVTELLSLP--  323 (591)
Q Consensus       264 ~~g~t~Lh~A~~--------------~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~----A~~~g~~~iv~~Ll~~~--  323 (591)
                      ..|+||||+|+.              .++.+++++|+++|++ ++.+|..|+||||.    |...++.+++++|++..  
T Consensus       350 ~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~  428 (764)
T PHA02716        350 NIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVL  428 (764)
T ss_pred             CCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC-CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcch
Confidence            999999999875              3789999999999998 89999999999994    23356788888887631  


Q ss_pred             ----------------------------------------------------------CCCcccccCCCCCHHHHHhhCC
Q 007741          324 ----------------------------------------------------------DTNVNALTRDHKTALDIAEGLP  345 (591)
Q Consensus       324 ----------------------------------------------------------g~d~~~~d~~G~t~L~~A~~~~  345 (591)
                                                                                +.+++..|..|+||||+|+..+
T Consensus       429 ~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g  508 (764)
T PHA02716        429 NMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISH  508 (764)
T ss_pred             hhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcC
Confidence                                                                      1123556889999999999877


Q ss_pred             CCh-hhHHHHHHHHhcCcccccccCCchHHhhhhhhhhh
Q 007741          346 SSE-EASEIKDCLARCGAVRANELNQPRDELRKTVTQIK  383 (591)
Q Consensus       346 ~~~-~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~  383 (591)
                      ... ...+++++|++.|++.....+.+..++..+....+
T Consensus       509 ~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~  547 (764)
T PHA02716        509 TNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNR  547 (764)
T ss_pred             CccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC
Confidence            332 13467799999999998887778888877776543

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.2e-33  Score=299.85  Aligned_cols=257  Identities=18%  Similarity=0.214  Sum_probs=220.7

Q ss_pred             CCCCcHhHHHHHcC--CHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhC------cHH
Q 007741           72 RHNDTELHLAAQRG--DLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKG------HIE  143 (591)
Q Consensus        72 ~~g~t~Lh~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g------~~~  143 (591)
                      .+|.||||.++..+  +.++|+.||+.                      |+++|..+ .+.||||.|+.++      +.+
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~----------------------GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~   89 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDN----------------------GADVNYKG-YIETPLCAVLRNREITSNKIKK   89 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHc----------------------CCCccCCC-CCCCcHHHHHhccCcchhhHHH
Confidence            45889998766554  68999999987                      77788776 5799999998754      578


Q ss_pred             HHHHHHhcCCCccCccCCCCCChHHHHHHHh---CcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc--CCHHHHHHHH
Q 007741          144 VVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ---GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR--GHTAVVNELL  218 (591)
Q Consensus       144 ~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g~~~~v~~LL  218 (591)
                      +|++|+++|++  ++.++..|.||||.|+..   |+.+++++|+++|++++...|..|.||||+|+..  ++.+++++|+
T Consensus        90 iv~~Ll~~Gad--in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll  167 (494)
T PHA02989         90 IVKLLLKFGAD--INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILL  167 (494)
T ss_pred             HHHHHHHCCCC--CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHH
Confidence            99999998866  577888999999998865   6899999999999998667888999999998764  6899999999


Q ss_pred             hcCCCccee-cCCCCCcHHHHHHHcC----CHHHHHHHHhcCcccccccCCCCCcHHHHHHhC------CCHHHHHHHHH
Q 007741          219 SKDGGLLEI-SRSNGKNALHFAARQG----HVDVVKALLSKDPQLARRTDKKGQTALHMAVKG------QSCEVVKLLLE  287 (591)
Q Consensus       219 ~~~~~~~~~-~~~~g~tpLh~A~~~g----~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~------~~~~~v~~Ll~  287 (591)
                      +++.. ++. .+..|.||||.|+..+    +.+++++|++.|+++ +..|..+.|+||.++..      +..+++++|+.
T Consensus       168 ~~Gad-i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~  245 (494)
T PHA02989        168 SFGVN-LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI-ETNNNGSESVLESFLDNNKILSKKEFKVLNFILK  245 (494)
T ss_pred             HcCCC-ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc-cccCCccccHHHHHHHhchhhcccchHHHHHHHh
Confidence            98554 444 6789999999998764    899999999999998 66688899999987754      35678887665


Q ss_pred             cCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCc
Q 007741          288 ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA  362 (591)
Q Consensus       288 ~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga  362 (591)
                       +++ ++.+|..|+||||+|+..|+.+++++|++ .|+|++.+|..|+||||+|+..+    +.++++.|++.+.
T Consensus       246 -~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~-~Gadin~~d~~G~TpL~~A~~~~----~~~iv~~LL~~~p  313 (494)
T PHA02989        246 -YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLK-LGDDIYNVSKDGDTVLTYAIKHG----NIDMLNRILQLKP  313 (494)
T ss_pred             -CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcC----CHHHHHHHHhcCC
Confidence             566 89999999999999999999999999999 59999999999999999999998    8889999988765

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.8e-33  Score=295.07  Aligned_cols=228  Identities=21%  Similarity=0.266  Sum_probs=209.6

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc
Q 007741          129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  208 (591)
Q Consensus       129 g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  208 (591)
                      .+++||.|+..|+.+++++|+++|.+  .+..+..|.||||+|+..|+.+++++|+++|+++ ...+..+.||||.|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~--~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGIN--PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHC
Confidence            57899999999999999999998765  4567778999999999999999999999999886 45567889999999999


Q ss_pred             CCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHc
Q 007741          209 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA  288 (591)
Q Consensus       209 g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  288 (591)
                      |+.++++.|++.+....+..+.+|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|+++
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999876665666788999999999999999999999999998 67799999999999999999999999999


Q ss_pred             CcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCC-CHHHHHhhCCCChhhHHHHHHHHhcCccccc
Q 007741          289 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK-TALDIAEGLPSSEEASEIKDCLARCGAVRAN  366 (591)
Q Consensus       289 ~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~-t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~  366 (591)
                      |++ ++.+|..|+||||+|+..|+.+++++|++ .|++++..+..|. ||+|+|+..+    ..+++++|++.|++...
T Consensus       158 g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~----~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        158 KAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENN----KIDIVRLFIKRGADCNI  230 (413)
T ss_pred             CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcC----CHHHHHHHHHCCcCcch
Confidence            998 88899999999999999999999999999 5999999999885 7899999999    88999999999998653

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-32  Score=294.54  Aligned_cols=245  Identities=23%  Similarity=0.271  Sum_probs=211.2

Q ss_pred             ccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCH
Q 007741          122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP  201 (591)
Q Consensus       122 ~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp  201 (591)
                      .+..+..+.||||.||..|+.++|++|+++|++  ++..|..|.||||+||..|+.++++.|++.+.....   ..+.+|
T Consensus        30 ~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gad--vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~  104 (477)
T PHA02878         30 STSASLIPFIPLHQAVEARNLDVVKSLLTRGHN--VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV---FYTLVA  104 (477)
T ss_pred             cCcccccCcchHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc---ccchhh
Confidence            344567899999999999999999999998754  577899999999999999999999999998765422   467899


Q ss_pred             HHHHHHcCCHHHHHHHHhc--------------------------------CCCcceecCCC-CCcHHHHHHHcCCHHHH
Q 007741          202 LVSAATRGHTAVVNELLSK--------------------------------DGGLLEISRSN-GKNALHFAARQGHVDVV  248 (591)
Q Consensus       202 L~~A~~~g~~~~v~~LL~~--------------------------------~~~~~~~~~~~-g~tpLh~A~~~g~~~~v  248 (591)
                      ++.|+..++.++++.|+..                                .+.+++..+.. |.||||+|+..|+.+++
T Consensus       105 l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv  184 (477)
T PHA02878        105 IKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLT  184 (477)
T ss_pred             HHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHH
Confidence            9999999887776666543                                13445566777 99999999999999999


Q ss_pred             HHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc-CcHHHHHHHhcCCCCCc
Q 007741          249 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK-KRTEIVTELLSLPDTNV  327 (591)
Q Consensus       249 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~-g~~~iv~~Ll~~~g~d~  327 (591)
                      ++|++.|+++ +..|..|+||||.|+..++.+++++|++.|++ ++.+|..|+||||+|+.. ++.+++++|++ .|+++
T Consensus       185 ~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~-~gadv  261 (477)
T PHA02878        185 ELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLE-HGVDV  261 (477)
T ss_pred             HHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHH-cCCCC
Confidence            9999999998 67799999999999999999999999999998 889999999999999976 79999999999 59999


Q ss_pred             ccccC-CCCCHHHHHhhCCCChhhHHHHHHHHhcCcccccccCCchHHhhhhhh
Q 007741          328 NALTR-DHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVT  380 (591)
Q Consensus       328 ~~~d~-~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~  380 (591)
                      +.++. .|.||||+|.  +    ..+++++|++.|++.......+.+++..+..
T Consensus       262 n~~~~~~g~TpLh~A~--~----~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        262 NAKSYILGLTALHSSI--K----SERKLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             CccCCCCCCCHHHHHc--c----CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            99986 8999999993  3    5688999999999987776666666665543

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.6e-32  Score=291.44  Aligned_cols=258  Identities=16%  Similarity=0.171  Sum_probs=223.4

Q ss_pred             CCCcHhHHHHH--cCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHh-----CcHHHH
Q 007741           73 HNDTELHLAAQ--RGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADK-----GHIEVV  145 (591)
Q Consensus        73 ~g~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~-----g~~~~v  145 (591)
                      ++.|+++.+..  .++.++++.|++.                      |+.+|..|..|.||||.|+.+     ++.+++
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~~Ll~~----------------------Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv   92 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVKLFINL----------------------GANVNGLDNEYSTPLCTILSNIKDYKHMLDIV   92 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHHHHHHC----------------------CCCCCCCCCCCCChHHHHHHhHHhHHhHHHHH
Confidence            45577664443  4589999999987                      788999999999999999864     779999


Q ss_pred             HHHHhcCCCccCccCCCCCChHHHHHHHhC---cHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC---HHHHHHHHh
Q 007741          146 NELLKYSTKEGLTRKNRSGFDPLHIAAVQG---HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH---TAVVNELLS  219 (591)
Q Consensus       146 ~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~LL~  219 (591)
                      ++|+++|++  ++.+|..|+||||+|+.++   +.+++++|+++|+++ +..|..|.||||+|+..|+   .+++++|++
T Consensus        93 ~~Ll~~Gad--iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~  169 (489)
T PHA02798         93 KILIENGAD--INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE  169 (489)
T ss_pred             HHHHHCCCC--CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHH
Confidence            999998765  6778999999999999986   789999999999998 6788999999999999998   999999999


Q ss_pred             cCCCcceec-CCCCCcHHHHHHHc----CCHHHHHHHHhcCcccccccCCCCCcHHH-------HHHhCCCHHHHHHHHH
Q 007741          220 KDGGLLEIS-RSNGKNALHFAARQ----GHVDVVKALLSKDPQLARRTDKKGQTALH-------MAVKGQSCEVVKLLLE  287 (591)
Q Consensus       220 ~~~~~~~~~-~~~g~tpLh~A~~~----g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh-------~A~~~~~~~~v~~Ll~  287 (591)
                      ++ .+++.. +..|.||||.++..    ++.+++++|+++|+++ +..+..|.++++       .+...++.+++.+|+.
T Consensus       170 ~g-adin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i-~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~  247 (489)
T PHA02798        170 KG-VDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFII-NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS  247 (489)
T ss_pred             hC-CCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCc-ccCCccccchHHHHHHHHHhhcccchHHHHHHHHh
Confidence            84 555555 46789999999764    4899999999999998 566888888876       2445677888888776


Q ss_pred             cCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCccc
Q 007741          288 ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  364 (591)
Q Consensus       288 ~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  364 (591)
                       +++ +|.+|..|+||||+|+..|+.+++++|++ .|+|++.+|..|+|||++|+..+    ..++++.|++.++..
T Consensus       248 -~~d-vN~~d~~G~TPL~~A~~~~~~~~v~~LL~-~GAdin~~d~~G~TpL~~A~~~~----~~~iv~~lL~~~~~~  317 (489)
T PHA02798        248 -YID-INQVDELGFNPLYYSVSHNNRKIFEYLLQ-LGGDINIITELGNTCLFTAFENE----SKFIFNSILNKKPNK  317 (489)
T ss_pred             -cCC-CCCcCcCCccHHHHHHHcCcHHHHHHHHH-cCCcccccCCCCCcHHHHHHHcC----cHHHHHHHHccCCCH
Confidence             566 89999999999999999999999999999 59999999999999999999988    888999999888764

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-32  Score=268.32  Aligned_cols=198  Identities=28%  Similarity=0.404  Sum_probs=169.1

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHh
Q 007741           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLK  150 (591)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~  150 (591)
                      ..+|.|||.+||++|+.++|++|++.+.......             ..-..+..+.+|-+||..|+..||.++|+.|++
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~-------------GsV~FDge~IegappLWaAsaAGHl~vVk~L~~  105 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQG-------------GSVRFDGETIEGAPPLWAASAAGHLEVVKLLLR  105 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCC-------------ceEEeCCcccCCCchhhHHhccCcHHHHHHHHH
Confidence            3467799999999999999999998643221100             012234456789999999999999999999999


Q ss_pred             cCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCC
Q 007741          151 YSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS  230 (591)
Q Consensus       151 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~  230 (591)
                      +++.  ++.......|||-.||.-|+++++++|+++++++ ...|..|.|.||.||.+||.+++++|++. +++++.++.
T Consensus       106 ~ga~--VN~tT~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~-gADvn~ks~  181 (615)
T KOG0508|consen  106 RGAS--VNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQ-GADVNAKSY  181 (615)
T ss_pred             hcCc--cccccccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHh-CCCcchhcc
Confidence            8854  5666666779999999999999999999999998 78899999999999999999999999988 677888999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHH
Q 007741          231 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE  287 (591)
Q Consensus       231 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  287 (591)
                      .|.|+||.|+..|+.|++++|+.+|+.+  ..|..|.|||..|+..|+.++|++|++
T Consensus       182 kGNTALH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  182 KGNTALHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cCchHHHhhhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999999999999987  358889999999999999888888873

>PHA02917 ankyrin-like protein; Provisional

Probab=99.98  E-value=1.3e-30  Score=285.43  Aligned_cols=281  Identities=15%  Similarity=0.085  Sum_probs=183.5

Q ss_pred             hhccCCCCCcHhHHHHHc---CCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCC-------------
Q 007741           67 KQVTGRHNDTELHLAAQR---GDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGE-------------  130 (591)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~-------------  130 (591)
                      ....|.+|.||||.|+..   |+.++|+.||+...                      .++..|..|.             
T Consensus        25 ~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga----------------------~v~~~~~~g~TpL~~Aa~~g~~~   82 (661)
T PHA02917         25 NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGT----------------------NPLHKNWRQLTPLEEYTNSRHVK   82 (661)
T ss_pred             ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCC----------------------CccccCCCCCCHHHHHHHcCChh
Confidence            345588999999997665   88999999998633                      2333333333             


Q ss_pred             ----------------------cHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHH--HhCcHHHHHHHHhC
Q 007741          131 ----------------------TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAA--VQGHHAIVQVLLDH  186 (591)
Q Consensus       131 ----------------------TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~iv~~Ll~~  186 (591)
                                            +++|.|+.+|+.++|++|+++|++  ++.+|..|+||||.|+  ..|+.+++++|+++
T Consensus        83 v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gad--in~~d~~g~T~L~~~~a~~~~~~eivklLi~~  160 (661)
T PHA02917         83 VNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFD--LSVKCENHRSVIENYVMTDDPVPEIIDLFIEN  160 (661)
T ss_pred             HHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCC--CCccCCCCccHHHHHHHccCCCHHHHHHHHHc
Confidence                                  445556666677777777776654  5667888999998654  46789999999999


Q ss_pred             CCCCccc--CCCCC-----------CCHHHHHHH-----------cCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHc
Q 007741          187 DPSLSQT--TGPSN-----------ATPLVSAAT-----------RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ  242 (591)
Q Consensus       187 ~~~~~~~--~~~~g-----------~tpL~~A~~-----------~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~  242 (591)
                      |++++..  .+..|           .||||+|+.           .++.+++++|+++ +.+++..|.+|.||||+|+..
T Consensus       161 Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~-Gadvn~~d~~G~TpLh~A~~~  239 (661)
T PHA02917        161 GCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH-GIKPSSIDKNYCTALQYYIKS  239 (661)
T ss_pred             CCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHC-CCCcccCCCCCCcHHHHHHHc
Confidence            9887422  22233           599999875           4678999999988 567788888999999999988


Q ss_pred             CCH--HHHHHHHhcCccccc---ccCCCCCcHHHHHH-------------------------------------------
Q 007741          243 GHV--DVVKALLSKDPQLAR---RTDKKGQTALHMAV-------------------------------------------  274 (591)
Q Consensus       243 g~~--~~v~~Ll~~~~~~~~---~~d~~g~t~Lh~A~-------------------------------------------  274 (591)
                      |+.  +++++|++ |++...   ..|..|.+|+|+|+                                           
T Consensus       240 g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~  318 (661)
T PHA02917        240 SHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKET  318 (661)
T ss_pred             CCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHH
Confidence            874  68888875 554321   12333444444443                                           


Q ss_pred             ---------------------hCCC--HHHHHHHHHcCccc-----------------------------ccCCCCCCCc
Q 007741          275 ---------------------KGQS--CEVVKLLLEADAAI-----------------------------VMLPDKFGNT  302 (591)
Q Consensus       275 ---------------------~~~~--~~~v~~Ll~~~~~~-----------------------------~~~~d~~g~T  302 (591)
                                           ..|.  .+++++|+++|+++                             .+..+.+|+|
T Consensus       319 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~T  398 (661)
T PHA02917        319 ISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEI  398 (661)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCC
Confidence                                 1222  23556666555541                             1222345777


Q ss_pred             HHHHHHHcC-----------------------cHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHh
Q 007741          303 ALHVATRKK-----------------------RTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR  359 (591)
Q Consensus       303 ~Lh~A~~~g-----------------------~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~  359 (591)
                      |||.|++.+                       ..++++.|+. .|+|+|.+|..|+||||+|+..+    ..++.++|++
T Consensus       399 pL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~-~GAdIN~kd~~G~TpLh~Aa~~~----~~~~v~~Ll~  473 (661)
T PHA02917        399 PIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLP-YLKDINMIDKRGETLLHKAVRYN----KQSLVSLLLE  473 (661)
T ss_pred             hhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHH-CCCCCCCCCCCCcCHHHHHHHcC----CHHHHHHHHH
Confidence            777766432                       2345677777 37777777777777777777666    6667777777


Q ss_pred             cCcccccccCCchHHhhhh
Q 007741          360 CGAVRANELNQPRDELRKT  378 (591)
Q Consensus       360 ~ga~~~~~~~~~~~~l~~~  378 (591)
                      .|++...........+...
T Consensus       474 ~GAdin~~d~~G~T~L~~A  492 (661)
T PHA02917        474 SGSDVNIRSNNGYTCIAIA  492 (661)
T ss_pred             CcCCCCCCCCCCCCHHHHH
Confidence            7776655544444444433

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.98  E-value=1.4e-30  Score=281.06  Aligned_cols=274  Identities=21%  Similarity=0.215  Sum_probs=230.6

Q ss_pred             cCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHh--CcHHHHHHHHhcCCCccCccCC
Q 007741           84 RGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADK--GHIEVVNELLKYSTKEGLTRKN  161 (591)
Q Consensus        84 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~--g~~~~v~~Ll~~~~~~~~~~~~  161 (591)
                      ..+.++++.||+.                      |+++|.. ..|.||||.++..  ++.++|++|+++|++.+  .++
T Consensus        13 ~~~~~~v~~LL~~----------------------GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn--~~~   67 (494)
T PHA02989         13 TVDKNALEFLLRT----------------------GFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVN--YKG   67 (494)
T ss_pred             cCcHHHHHHHHHc----------------------CCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCcc--CCC
Confidence            4789999999986                      7778887 5799999876654  37899999999987754  344


Q ss_pred             CCCChHHHHHHHhC------cHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCcc-eecCCC
Q 007741          162 RSGFDPLHIAAVQG------HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR---GHTAVVNELLSKDGGLL-EISRSN  231 (591)
Q Consensus       162 ~~g~t~Lh~A~~~g------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~~~~v~~LL~~~~~~~-~~~~~~  231 (591)
                       .+.||||.|+.++      +.+++++|+++|+++ +..|..|.||||.|+..   |+.+++++|+++ ++++ +..|..
T Consensus        68 -~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~-Gadin~~~d~~  144 (494)
T PHA02989         68 -YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSK-GINVNDVKNSR  144 (494)
T ss_pred             -CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHC-CCCcccccCCC
Confidence             4789999998754      578999999999998 66788999999988765   679999999998 5556 788999


Q ss_pred             CCcHHHHHHHc--CCHHHHHHHHhcCcccccccCCCCCcHHHHHHhC----CCHHHHHHHHHcCcccccCCCCCCCcHHH
Q 007741          232 GKNALHFAARQ--GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG----QSCEVVKLLLEADAAIVMLPDKFGNTALH  305 (591)
Q Consensus       232 g~tpLh~A~~~--g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~----~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh  305 (591)
                      |.||||+|+..  ++.+++++|+++|+++....+..|.||||+|+.+    ++.+++++|+++|++ ++.+|..|.||||
T Consensus       145 g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~-vn~~~~~~~t~l~  223 (494)
T PHA02989        145 GYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN-IETNNNGSESVLE  223 (494)
T ss_pred             CCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC-ccccCCccccHHH
Confidence            99999999764  6899999999999998554688999999999865    489999999999998 7888889999999


Q ss_pred             HHHHc------CcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccccccCCchHHhhhhh
Q 007741          306 VATRK------KRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTV  379 (591)
Q Consensus       306 ~A~~~------g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~  379 (591)
                      .++..      +..+++++|+.  ++++|.+|..|+||||+|+..+    +.+++++|++.|++.......+.+++..+.
T Consensus       224 ~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~TpL~~Aa~~~----~~~~v~~LL~~Gadin~~d~~G~TpL~~A~  297 (494)
T PHA02989        224 SFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGFNPLLISAKVD----NYEAFNYLLKLGDDIYNVSKDGDTVLTYAI  297 (494)
T ss_pred             HHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCCCHHHHHHHhc----CHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            88764      35678887775  6999999999999999999998    889999999999998887777777887777


Q ss_pred             hhhhhhhhhHHHH
Q 007741          380 TQIKKDVHTQLEQ  392 (591)
Q Consensus       380 ~~~~~~~~~~l~~  392 (591)
                      .....++.+.+-+
T Consensus       298 ~~~~~~iv~~LL~  310 (494)
T PHA02989        298 KHGNIDMLNRILQ  310 (494)
T ss_pred             HcCCHHHHHHHHh
Confidence            6666555554433

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.4e-30  Score=274.70  Aligned_cols=197  Identities=18%  Similarity=0.162  Sum_probs=133.5

Q ss_pred             hccCCCCCcHhHHHHHcC---CHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhC--cH
Q 007741           68 QVTGRHNDTELHLAAQRG---DLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKG--HI  142 (591)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g--~~  142 (591)
                      +..|..|.||||+|+..|   +.++++.||+.                      |+.++..|..|.||||+|+..|  +.
T Consensus        35 ~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~----------------------GAdin~kD~~G~TPLh~Aa~~~~~~~   92 (672)
T PHA02730         35 KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSR----------------------GVERLCRNNEGLTPLGVYSKRKYVKS   92 (672)
T ss_pred             hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC----------------------CCCCcccCCCCCChHHHHHHcCCCcH
Confidence            356788999999999997   59999999986                      8889999999999999999977  79


Q ss_pred             HHHHHHHhcCCCccCccCCCCCChHHHHHHH--hCcHHHHHHHHh-CCCCCcccCC----CCCCCHHHHHHHcCCHHHHH
Q 007741          143 EVVNELLKYSTKEGLTRKNRSGFDPLHIAAV--QGHHAIVQVLLD-HDPSLSQTTG----PSNATPLVSAATRGHTAVVN  215 (591)
Q Consensus       143 ~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~iv~~Ll~-~~~~~~~~~~----~~g~tpL~~A~~~g~~~~v~  215 (591)
                      |+|++|++.|++.+.+..+..+.+|||.++.  +++.+++++|+. .+.++....+    ..|.+|++++...++.++|+
T Consensus        93 eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvk  172 (672)
T PHA02730         93 QIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLL  172 (672)
T ss_pred             HHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHH
Confidence            9999999998766556566667777777777  777777777775 4444432222    25677777777777777777


Q ss_pred             HHHhcCCCcc------eecCCCC-CcHHHHH------HHcCCHHHHHHHHhcCcccccccCCCCCcHHHH--HHhCCCHH
Q 007741          216 ELLSKDGGLL------EISRSNG-KNALHFA------ARQGHVDVVKALLSKDPQLARRTDKKGQTALHM--AVKGQSCE  280 (591)
Q Consensus       216 ~LL~~~~~~~------~~~~~~g-~tpLh~A------~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~--A~~~~~~~  280 (591)
                      +|+++++...      ...+..+ .|.||++      ...++.|++++|+++|+++ +.+|..|+||||+  +...++.|
T Consensus       173 lLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI-N~kd~~G~TpLh~~~~~~~~~~e  251 (672)
T PHA02730        173 WLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI-HGRDEGGSLPIQYYWSCSTIDIE  251 (672)
T ss_pred             HHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCcccHH
Confidence            7777643321      1112222 2333322      2334566666666666665 4556666666663  33334455


Q ss_pred             HHHHHHH
Q 007741          281 VVKLLLE  287 (591)
Q Consensus       281 ~v~~Ll~  287 (591)
                      ++++|++
T Consensus       252 iv~~Li~  258 (672)
T PHA02730        252 IVKLLIK  258 (672)
T ss_pred             HHHHHHh
Confidence            5555555

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=6.1e-31  Score=268.97  Aligned_cols=211  Identities=30%  Similarity=0.415  Sum_probs=194.0

Q ss_pred             CcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC
Q 007741          130 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG  209 (591)
Q Consensus       130 ~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  209 (591)
                      .+-++.|+++|.++-|+.|++.. ...++..|.+|.|+||+|+.+++.+++++|+++|++++.....-+.||||+|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            45678999999999999999974 56678889999999999999999999999999999997777788999999999999


Q ss_pred             CHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcC
Q 007741          210 HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD  289 (591)
Q Consensus       210 ~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~  289 (591)
                      +..++..|+++ ++++...|.+|.+|||.|+..|+.-++-+|+.++.++ +.+|.+|+||||+|+..|....++.|++.+
T Consensus       124 ~~~vv~lLlqh-GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  124 HISVVDLLLQH-GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             cHHHHHHHHHc-CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence            99999999998 6778999999999999999999999999999999887 788999999999999999998899999999


Q ss_pred             cccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhC
Q 007741          290 AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL  344 (591)
Q Consensus       290 ~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~  344 (591)
                      +.+....|.+|+||||+|+..|+..++. |+...|++.+.+|.+|+||+++|.+.
T Consensus       202 a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  202 ASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            9855555599999999999999999999 55558999999999999999999765

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=3.8e-31  Score=292.01  Aligned_cols=235  Identities=34%  Similarity=0.401  Sum_probs=214.8

Q ss_pred             cccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhC-cHHHHHHHHhCCCCCcccCCCC
Q 007741          119 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG-HHAIVQVLLDHDPSLSQTTGPS  197 (591)
Q Consensus       119 ~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~iv~~Ll~~~~~~~~~~~~~  197 (591)
                      +...+..+..|.||||.|+.+++.++|+.+++++++.  +.++..|.||+|+|+..| ..+++..+++.+.++ +..-..
T Consensus       397 ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~--~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~-n~~s~~  473 (1143)
T KOG4177|consen  397 GADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP--NAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADP-NAVSKQ  473 (1143)
T ss_pred             cCCcccCCCCCcceeeehhhccCcceEEEEeccCCCh--hhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCc-chhccc
Confidence            6778889999999999999999999999999987764  667888999999999999 889999999999887 667788


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCC
Q 007741          198 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ  277 (591)
Q Consensus       198 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  277 (591)
                      |.||||.|+..||.+++..|++.. ...+.....|.+++|.|...+...+++.++++|.++ ..++..|.||||+|+..|
T Consensus       474 G~T~Lhlaaq~Gh~~~~~llle~~-~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~r~~TpLh~A~~~g  551 (1143)
T KOG4177|consen  474 GFTPLHLAAQEGHTEVVQLLLEGG-ANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANV-DLRTGRGYTPLHVAVHYG  551 (1143)
T ss_pred             cCcchhhhhccCCchHHHHhhhcC-CccCccchhccchhhhhhhhhhHHHHHHHhhcCCce-ehhcccccchHHHHHhcC
Confidence            999999999999999999999874 455667788999999999999999999999999998 677999999999999999


Q ss_pred             CHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHH
Q 007741          278 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCL  357 (591)
Q Consensus       278 ~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L  357 (591)
                      +.++|++|+++|++ ++.+|+.|+||||.|+..|+.+++++|+++ |+++|..|.+|.|||++|...+    ...+.+.|
T Consensus       552 ~v~~VkfLLe~gAd-v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~-GA~vna~d~~g~TpL~iA~~lg----~~~~~k~l  625 (1143)
T KOG4177|consen  552 NVDLVKFLLEHGAD-VNAKDKLGYTPLHQAAQQGHNDIAELLLKH-GASVNAADLDGFTPLHIAVRLG----YLSVVKLL  625 (1143)
T ss_pred             CchHHHHhhhCCcc-ccccCCCCCChhhHHHHcChHHHHHHHHHc-CCCCCcccccCcchhHHHHHhc----ccchhhHH
Confidence            99999999999999 888999999999999999999999999995 9999999999999999999999    78889999


Q ss_pred             HhcCccc
Q 007741          358 ARCGAVR  364 (591)
Q Consensus       358 ~~~ga~~  364 (591)
                      ...++..
T Consensus       626 ~~~~~~~  632 (1143)
T KOG4177|consen  626 KVVTATP  632 (1143)
T ss_pred             HhccCcc
Confidence            9888874

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.3e-29  Score=273.11  Aligned_cols=246  Identities=16%  Similarity=0.230  Sum_probs=211.4

Q ss_pred             hhccchhhhccCCCCCcHhHHHHHc-----CCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHH
Q 007741           60 AGKKKYVKQVTGRHNDTELHLAAQR-----GDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF  134 (591)
Q Consensus        60 ~~~~~~~~~~~~~~g~t~Lh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~  134 (591)
                      .-+........+..|.||||.|+..     ++.++++.|++.                      ++++|.+|..|.||||
T Consensus        57 Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~----------------------GadiN~~d~~G~TpLh  114 (489)
T PHA02798         57 FINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIEN----------------------GADINKKNSDGETPLY  114 (489)
T ss_pred             HHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC----------------------CCCCCCCCCCcCcHHH
Confidence            3344444556778999999999864     679999999986                      7889999999999999


Q ss_pred             HHHHhC---cHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCc---HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc
Q 007741          135 TAADKG---HIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH---HAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  208 (591)
Q Consensus       135 ~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  208 (591)
                      +|+.+|   +.+++++|+++|++  ++..|..|.||||+|+..|+   .+++++|+++|+++....+..|.||||.++..
T Consensus       115 ~a~~~~~~~~~~iv~~Ll~~Gad--vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~  192 (489)
T PHA02798        115 CLLSNGYINNLEILLFMIENGAD--TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKY  192 (489)
T ss_pred             HHHHcCCcChHHHHHHHHHcCCC--ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHh
Confidence            999986   78999999998865  57789999999999999998   99999999999998665567899999998764


Q ss_pred             ----CCHHHHHHHHhcCCCcceecCCCCCcHHH-------HHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCC
Q 007741          209 ----GHTAVVNELLSKDGGLLEISRSNGKNALH-------FAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ  277 (591)
Q Consensus       209 ----g~~~~v~~LL~~~~~~~~~~~~~g~tpLh-------~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  277 (591)
                          ++.+++++|+++ +..++..+..|.++++       .+...++.+++++|+. ++++ +.+|..|+||||+|+..|
T Consensus       193 ~~~~~~~~ivk~Li~~-Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dv-N~~d~~G~TPL~~A~~~~  269 (489)
T PHA02798        193 NIDRIDADILKLFVDN-GFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDI-NQVDELGFNPLYYSVSHN  269 (489)
T ss_pred             ccccCCHHHHHHHHHC-CCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCC-CCcCcCCccHHHHHHHcC
Confidence                489999999998 5566777888888876       2445677888888776 5777 778999999999999999


Q ss_pred             CHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCC
Q 007741          278 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH  334 (591)
Q Consensus       278 ~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G  334 (591)
                      +.+++++|++.|++ ++.+|..|+||||+|+..++.++++.|++. +.+++..+...
T Consensus       270 ~~~~v~~LL~~GAd-in~~d~~G~TpL~~A~~~~~~~iv~~lL~~-~~~~~~i~~~~  324 (489)
T PHA02798        270 NRKIFEYLLQLGGD-INIITELGNTCLFTAFENESKFIFNSILNK-KPNKNTISYTY  324 (489)
T ss_pred             cHHHHHHHHHcCCc-ccccCCCCCcHHHHHHHcCcHHHHHHHHcc-CCCHHHHHHHH
Confidence            99999999999999 899999999999999999999999999994 88887665443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=8.7e-29  Score=263.98  Aligned_cols=308  Identities=14%  Similarity=0.160  Sum_probs=225.0

Q ss_pred             hhccchhhhccCCCCCcHhHHHHHcC--CHHHHHHHHcCCCcc--c-cccc---------CCCcchhHHHHh----hccc
Q 007741           60 AGKKKYVKQVTGRHNDTELHLAAQRG--DLGAVKQILYGIDSQ--M-VGNL---------SGAEFDTEVAEI----RSSV  121 (591)
Q Consensus        60 ~~~~~~~~~~~~~~g~t~Lh~Aa~~g--~~~~v~~Ll~~~~~~--~-~~~~---------~~~~~~~~~~~~----~~~~  121 (591)
                      +-......+..|.+|.||||.|+..|  +.++++.|++.....  . .+..         .....+.++.++    .+.+
T Consensus        63 LLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~  142 (672)
T PHA02730         63 LLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIR  142 (672)
T ss_pred             HHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCC
Confidence            33444555677899999999999977  799999999874311  0 0100         000111111111    2233


Q ss_pred             ccccC-----CCCCcHHHHHHHhCcHHHHHHHHhcCCCcc-C----c-cCCCCCChHHHHHH------HhCcHHHHHHHH
Q 007741          122 VNEVN-----ELGETALFTAADKGHIEVVNELLKYSTKEG-L----T-RKNRSGFDPLHIAA------VQGHHAIVQVLL  184 (591)
Q Consensus       122 ~~~~n-----~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~-~----~-~~~~~g~t~Lh~A~------~~g~~~iv~~Ll  184 (591)
                      ++..+     ..|.+|+++|+..++.|+|++|+++|+... .    . ..+..+.|.||+++      .+++.|++++|+
T Consensus       143 ~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLI  222 (672)
T PHA02730        143 PSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLI  222 (672)
T ss_pred             hhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHH
Confidence            33332     378999999999999999999999988763 1    1 22233345666444      557899999999


Q ss_pred             hCCCCCcccCCCCCCCHHHH--HHHcCCHHHHHHHHh--------------------------------cCCCccee---
Q 007741          185 DHDPSLSQTTGPSNATPLVS--AATRGHTAVVNELLS--------------------------------KDGGLLEI---  227 (591)
Q Consensus       185 ~~~~~~~~~~~~~g~tpL~~--A~~~g~~~~v~~LL~--------------------------------~~~~~~~~---  227 (591)
                      ++|+++ +..|..|.||||+  +...|+.|++++|++                                + +.+...   
T Consensus       223 s~GadI-N~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~  300 (672)
T PHA02730        223 DNNVSI-HGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPY-NVDMEIVNL  300 (672)
T ss_pred             HCCCCC-CCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccC-CcchHHHHH
Confidence            999998 7788999999995  556678999999998                                2 333333   


Q ss_pred             -----------------cCCCCCc---------------------HHHHHHHcC---CHHHHHHHHhcCcccccccCCCC
Q 007741          228 -----------------SRSNGKN---------------------ALHFAARQG---HVDVVKALLSKDPQLARRTDKKG  266 (591)
Q Consensus       228 -----------------~~~~g~t---------------------pLh~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~g  266 (591)
                                       .+..|.+                     .||.-...+   +.+++++|+++|+++. . +..|
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN-~-k~~G  378 (672)
T PHA02730        301 LIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMD-K-TTDN  378 (672)
T ss_pred             HhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCC-c-CCCC
Confidence                             4555654                     677777655   5999999999999984 4 4789


Q ss_pred             CcHHHHHHhCCC----HHHHHHHHHcCcc-cccCCCCCCCcHHHH---HHHcC---------cHHHHHHHhcCCCCCccc
Q 007741          267 QTALHMAVKGQS----CEVVKLLLEADAA-IVMLPDKFGNTALHV---ATRKK---------RTEIVTELLSLPDTNVNA  329 (591)
Q Consensus       267 ~t~Lh~A~~~~~----~~~v~~Ll~~~~~-~~~~~d~~g~T~Lh~---A~~~g---------~~~iv~~Ll~~~g~d~~~  329 (591)
                      .||||+|+..++    .+++++|+++|++ .++.+|.+|.||||.   |...+         ..+++++|+. .|+|+|.
T Consensus       379 ~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs-~GADINa  457 (672)
T PHA02730        379 NYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK-YMDDIDM  457 (672)
T ss_pred             CcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh-cccchhc
Confidence            999999988775    8999999999874 478899999999994   33332         2356999999 4999999


Q ss_pred             ccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccccccC-CchHHhh
Q 007741          330 LTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELN-QPRDELR  376 (591)
Q Consensus       330 ~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~-~~~~~l~  376 (591)
                      +|..|+||||+|+..+    ..+++++|++.|+......+ ....++.
T Consensus       458 kD~~G~TPLh~Aa~~~----~~eive~LI~~GAdIN~~d~~~g~TaL~  501 (672)
T PHA02730        458 IDNENKTLLYYAVDVN----NIQFARRLLEYGASVNTTSRSIINTAIQ  501 (672)
T ss_pred             cCCCCCCHHHHHHHhC----CHHHHHHHHHCCCCCCCCCCcCCcCHHH
Confidence            9999999999999988    88999999999998766553 2344443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=5.3e-30  Score=262.11  Aligned_cols=211  Identities=33%  Similarity=0.411  Sum_probs=190.7

Q ss_pred             CcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 007741           75 DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTK  154 (591)
Q Consensus        75 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~  154 (591)
                      ...++.|++.|+++.|+.+++..                     +..++..|.+|.|+||+||.+++.+++++|+++|++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~---------------------g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gad  103 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE---------------------GESVNNPDREGVTLLHWAAINNRLDVARYLISHGAD  103 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc---------------------CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCC
Confidence            36788999999999999999852                     566888999999999999999999999999999987


Q ss_pred             ccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCc
Q 007741          155 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN  234 (591)
Q Consensus       155 ~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~t  234 (591)
                      .+...- .-+.||||+|+++|+..+|++|+++|+++ ...|.+|.+|||.|++.|+.-.+-+||.++ .+++.+|.+|+|
T Consensus       104 vn~~gG-~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~-~d~d~~D~~grT  180 (600)
T KOG0509|consen  104 VNAIGG-VLGSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKG-ADIDLRDNNGRT  180 (600)
T ss_pred             ccccCC-CCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhc-ccCCCcCCCCCC
Confidence            653322 56789999999999999999999999998 788999999999999999999999999985 788999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc
Q 007741          235 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  310 (591)
Q Consensus       235 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~  310 (591)
                      |||+|+.+|+...++.|++.++.+....|.+|.||||+|+..|+.+++++|++.|++ ...+|.+|.||+.+|..+
T Consensus       181 pLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~-~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  181 PLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD-LDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCc-ccccccCCCCHHHHHHHh
Confidence            999999999999899999999999666669999999999999999999955555555 888999999999999877

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=5.5e-30  Score=282.85  Aligned_cols=317  Identities=29%  Similarity=0.319  Sum_probs=251.9

Q ss_pred             hhhhccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcc------h--hHHH---HhhcccccccCCCCCcHH
Q 007741           65 YVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEF------D--TEVA---EIRSSVVNEVNELGETAL  133 (591)
Q Consensus        65 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~------~--~~~~---~~~~~~~~~~n~~g~TpL  133 (591)
                      ......+.++.||+|+|.+.|..++++.++..........-.+...      .  .++.   ......-...++.|.||+
T Consensus       299 a~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl  378 (1143)
T KOG4177|consen  299 ADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPL  378 (1143)
T ss_pred             cccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcch
Confidence            3344455666677777777777777777765533222211111100      0  0000   001233445677899999


Q ss_pred             HHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC-CHH
Q 007741          134 FTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG-HTA  212 (591)
Q Consensus       134 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g-~~~  212 (591)
                      |+|+.+|..++++.+++.+..  .+..++.|.||||.|+..++.++++.+++++++. +..+..|.||+|.|+..| ..+
T Consensus       379 ~la~~~g~~~~v~Lll~~ga~--~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~g~~~~  455 (1143)
T KOG4177|consen  379 HLAVKSGRVSVVELLLEAGAD--PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAKKGRYLQ  455 (1143)
T ss_pred             hhhcccCchhHHHhhhhccCC--cccCCCCCcceeeehhhccCcceEEEEeccCCCh-hhHhhcCCChhhhhhhcccHhh
Confidence            999999999999999998766  5778888999999999999999999999999887 677888999999999999 677


Q ss_pred             HHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCccc
Q 007741          213 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI  292 (591)
Q Consensus       213 ~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~  292 (591)
                      ....+++. +.+++.....|.||||.|+..|+.+++..|++.++.. +...+.|-+++|.|...+...+++.++++|++ 
T Consensus       456 ~~~~l~~~-g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~-  532 (1143)
T KOG4177|consen  456 IARLLLQY-GADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADEDTVKVAKILLEHGAN-  532 (1143)
T ss_pred             hhhhHhhc-CCCcchhccccCcchhhhhccCCchHHHHhhhcCCcc-CccchhccchhhhhhhhhhHHHHHHHhhcCCc-
Confidence            77666665 6778888899999999999999999999999988665 55577899999999999999999999999998 


Q ss_pred             ccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccccccCCch
Q 007741          293 VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPR  372 (591)
Q Consensus       293 ~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~  372 (591)
                      .+.++..|+||||.|+.+|+.++|++||++ |+|++.+++.|+||||.|+..+    ..+++.+|.++|+..+.......
T Consensus       533 v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~-gAdv~ak~~~G~TPLH~Aa~~G----~~~i~~LLlk~GA~vna~d~~g~  607 (1143)
T KOG4177|consen  533 VDLRTGRGYTPLHVAVHYGNVDLVKFLLEH-GADVNAKDKLGYTPLHQAAQQG----HNDIAELLLKHGASVNAADLDGF  607 (1143)
T ss_pred             eehhcccccchHHHHHhcCCchHHHHhhhC-CccccccCCCCCChhhHHHHcC----hHHHHHHHHHcCCCCCcccccCc
Confidence            888999999999999999999999999995 9999999999999999999999    89999999999999888777766


Q ss_pred             HHhhhhhhhhhhhhhhHHHH
Q 007741          373 DELRKTVTQIKKDVHTQLEQ  392 (591)
Q Consensus       373 ~~l~~~~~~~~~~~~~~l~~  392 (591)
                      ..+.......+-++.+.+..
T Consensus       608 TpL~iA~~lg~~~~~k~l~~  627 (1143)
T KOG4177|consen  608 TPLHIAVRLGYLSVVKLLKV  627 (1143)
T ss_pred             chhHHHHHhcccchhhHHHh
Confidence            66666665555555554443

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.1e-28  Score=258.21  Aligned_cols=270  Identities=14%  Similarity=0.104  Sum_probs=219.0

Q ss_pred             ccCCCCCcHhHH-HHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHH-hCcHHHHH
Q 007741           69 VTGRHNDTELHL-AAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAAD-KGHIEVVN  146 (591)
Q Consensus        69 ~~~~~g~t~Lh~-Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~-~g~~~~v~  146 (591)
                      ..+-+|.+++|. |...|++|+|+.|+++                      |+++|..+..|.||||+|+. .|+.|+++
T Consensus        66 ~~n~~~~~~~~~~~s~n~~lElvk~LI~~----------------------GAdvN~~~n~~~~~l~ya~~~~~~~eivk  123 (631)
T PHA02792         66 YKNINDFDIFEYLCSDNIDIELLKLLISK----------------------GLEINSIKNGINIVEKYATTSNPNVDVFK  123 (631)
T ss_pred             cCccCCccHHHHHHHhcccHHHHHHHHHc----------------------CCCcccccCCCCcceeEeecCCCChHHHH
Confidence            356788889975 6677899999999986                      88899999999999999976 69999999


Q ss_pred             HHHhcCCCc----------------------------------cCccCCCCCChHHHHHHHhC-------cHHHHHHHHh
Q 007741          147 ELLKYSTKE----------------------------------GLTRKNRSGFDPLHIAAVQG-------HHAIVQVLLD  185 (591)
Q Consensus       147 ~Ll~~~~~~----------------------------------~~~~~~~~g~t~Lh~A~~~g-------~~~iv~~Ll~  185 (591)
                      +|+++|++.                                  ..+.++..|.||||+|+.++       +.|+++.|+.
T Consensus       124 ~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~  203 (631)
T PHA02792        124 LLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLIS  203 (631)
T ss_pred             HHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHh
Confidence            999998751                                  12345677999999999999       8999999999


Q ss_pred             CCCCCcccCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCC---------------------c------------------
Q 007741          186 HDPSLSQTTGPSNATPLVSAATRG--HTAVVNELLSKDGG---------------------L------------------  224 (591)
Q Consensus       186 ~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~LL~~~~~---------------------~------------------  224 (591)
                      +|+++ +..|..|.||||+|+.+.  +.|+++.|++..-.                     .                  
T Consensus       204 ~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i  282 (631)
T PHA02792        204 HEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYI  282 (631)
T ss_pred             CCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccch
Confidence            99998 567788999999999998  67777777653110                     0                  


Q ss_pred             -------------------------------------------------ceecCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 007741          225 -------------------------------------------------LEISRSNGKNALHFAARQGHVDVVKALLSKD  255 (591)
Q Consensus       225 -------------------------------------------------~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~  255 (591)
                                                                       ..........+++.|+..|+.+++++|+++|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~G  362 (631)
T PHA02792        283 LELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNG  362 (631)
T ss_pred             hhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcC
Confidence                                                             0000113456788999999999999999999


Q ss_pred             cccccccCCCC--CcHHHHHHhCCCHH---HHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccc
Q 007741          256 PQLARRTDKKG--QTALHMAVKGQSCE---VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL  330 (591)
Q Consensus       256 ~~~~~~~d~~g--~t~Lh~A~~~~~~~---~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~  330 (591)
                      +++ +..|..|  .||||.|......+   ++++|+++|++ +|.+|..|.||||+|+..++.+++++|+++ |++++.+
T Consensus       363 ADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~-GADIN~k  439 (631)
T PHA02792        363 NVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDN-GADINIT  439 (631)
T ss_pred             Cch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCc
Confidence            998 5556664  69999988776654   57888999998 889999999999999999999999999995 9999999


Q ss_pred             cCCCCCHHHHHhhC--CCC----hhhHHHHHHHHhcCccc
Q 007741          331 TRDHKTALDIAEGL--PSS----EEASEIKDCLARCGAVR  364 (591)
Q Consensus       331 d~~G~t~L~~A~~~--~~~----~~~~~i~~~L~~~ga~~  364 (591)
                      |..|+|||++|...  +..    +...++++.|+++|...
T Consensus       440 D~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        440 TKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             CCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            99999999999762  211    22356788888888654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.2e-28  Score=267.89  Aligned_cols=235  Identities=18%  Similarity=0.140  Sum_probs=192.7

Q ss_pred             cccccccCCCCCcHHHHHHHh---CcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHH----HHHHHHhCCCCCc
Q 007741          119 SSVVNEVNELGETALFTAADK---GHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA----IVQVLLDHDPSLS  191 (591)
Q Consensus       119 ~~~~~~~n~~g~TpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~----iv~~Ll~~~~~~~  191 (591)
                      +...+..|.+|+||||+|+..   |+.++|++|++.|++  ++.++..|+||||.|+..|+.+    +++.|++.+... 
T Consensus        22 ~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~--v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-   98 (661)
T PHA02917         22 RDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN--PLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-   98 (661)
T ss_pred             cCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC--ccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-
Confidence            556788899999999998665   889999999998865  4678899999999999999854    567888765432 


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHH--HcCCHHHHHHHHhcCcccccccC---CCC
Q 007741          192 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA--RQGHVDVVKALLSKDPQLARRTD---KKG  266 (591)
Q Consensus       192 ~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~d---~~g  266 (591)
                      +..+  ..+++++|+.+|+.+++++|+++ +.+++..|.+|+||||.|+  ..|+.+++++|+++|+++. ..|   ..|
T Consensus        99 n~~~--~~~~~~~a~~~~~~e~vk~Ll~~-Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn-~~d~~~~~g  174 (661)
T PHA02917         99 NIND--FNIFSYMKSKNVDVDLIKVLVEH-GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL-YEDEDDEYG  174 (661)
T ss_pred             CCCC--cchHHHHHhhcCCHHHHHHHHHc-CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc-ccccccccc
Confidence            2222  23677889999999999999988 7778899999999999654  5789999999999999984 223   234


Q ss_pred             -----------CcHHHHHHh-----------CCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcH--HHHHHHhcC
Q 007741          267 -----------QTALHMAVK-----------GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT--EIVTELLSL  322 (591)
Q Consensus       267 -----------~t~Lh~A~~-----------~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~--~iv~~Ll~~  322 (591)
                                 .||||+|+.           .++.+++++|+++|++ ++.+|.+|+||||+|+..|+.  ++|++|++ 
T Consensus       175 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-  252 (661)
T PHA02917        175 YAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-  252 (661)
T ss_pred             cccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-
Confidence                       599999986           4689999999999998 899999999999999999985  79999975 


Q ss_pred             CCCCcc----cccCCCCCHHHHHhhCC-----CChhhHHHHHHHHhcCcc
Q 007741          323 PDTNVN----ALTRDHKTALDIAEGLP-----SSEEASEIKDCLARCGAV  363 (591)
Q Consensus       323 ~g~d~~----~~d~~G~t~L~~A~~~~-----~~~~~~~i~~~L~~~ga~  363 (591)
                       |++++    ..|..|.+|+++|...+     ......+++++|++.|+.
T Consensus       253 -g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        253 -GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             -CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence             77765    46678899999998432     112367999999999985

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=6.6e-29  Score=243.39  Aligned_cols=220  Identities=33%  Similarity=0.475  Sum_probs=188.2

Q ss_pred             HHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCC-Cc---
Q 007741           80 LAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYST-KE---  155 (591)
Q Consensus        80 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~-~~---  155 (591)
                      .|++.|.+..+..|+-+..            ..++    ..+++ ...+|.|||.+||++||.++|++|+++.. +.   
T Consensus        10 naa~~g~l~~l~~ll~~~s------------~~ei----~~l~~-~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~   72 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSS------------NEEI----ISLIG-EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQG   72 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCc------------hHHH----HHHhc-cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCC
Confidence            7899999999998886532            1222    12222 34568899999999999999999999532 21   


Q ss_pred             ---cCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCC
Q 007741          156 ---GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG  232 (591)
Q Consensus       156 ---~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g  232 (591)
                         ..+...-+|-+||..|+..||.++|+.|+++|++++ .....+.|||..||..|+.+++++|+++ +.++++.|..|
T Consensus        73 GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN-~tT~TNStPLraACfDG~leivKyLvE~-gad~~IanrhG  150 (615)
T KOG0508|consen   73 GSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVN-DTTRTNSTPLRAACFDGHLEIVKYLVEH-GADPEIANRHG  150 (615)
T ss_pred             ceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccc-cccccCCccHHHHHhcchhHHHHHHHHc-CCCCcccccCC
Confidence               123334568899999999999999999999998884 4445567999999999999999999988 67789999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCc
Q 007741          233 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR  312 (591)
Q Consensus       233 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~  312 (591)
                      .|.||+|+..|+.+++++|++.|+++ +.++..|+|+||.|++.|+.+++++|+.+|+.+  ..|..|.|||..|+..|+
T Consensus       151 hTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~  227 (615)
T KOG0508|consen  151 HTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGH  227 (615)
T ss_pred             CeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhhcc
Confidence            99999999999999999999999999 788999999999999999999999999999863  458889999999999999


Q ss_pred             HHHHHHHhc
Q 007741          313 TEIVTELLS  321 (591)
Q Consensus       313 ~~iv~~Ll~  321 (591)
                      .++|+.|++
T Consensus       228 ~~iVe~L~~  236 (615)
T KOG0508|consen  228 TDIVERLLQ  236 (615)
T ss_pred             hHHHHHHhc
Confidence            999999996

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.9e-26  Score=219.08  Aligned_cols=183  Identities=18%  Similarity=0.215  Sum_probs=116.8

Q ss_pred             ccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhC--cHHHHHHHHhCCCCCcccCCCCCCCH
Q 007741          124 EVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG--HHAIVQVLLDHDPSLSQTTGPSNATP  201 (591)
Q Consensus       124 ~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tp  201 (591)
                      .....+.||||.|+..|+.++|+.|++.     .+..|..|.||||+|+..+  +.+++++|+++|+++....+..|.||
T Consensus        16 ~~~~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~Tp   90 (209)
T PHA02859         16 YLFYRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSA   90 (209)
T ss_pred             HHhhccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCH
Confidence            3355667888888888888888888764     2345667778888877644  67777777777777643323355556


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHh--CCCH
Q 007741          202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK--GQSC  279 (591)
Q Consensus       202 L~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~~~~  279 (591)
                      ||+|+..+                               ..++.+++++|+++|+++ +.+|..|.||||+|+.  .++.
T Consensus        91 Lh~a~~~~-------------------------------~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~  138 (209)
T PHA02859         91 LHHYLSFN-------------------------------KNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRI  138 (209)
T ss_pred             HHHHHHhC-------------------------------ccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCH
Confidence            65554321                               012455666666666655 4456666666666554  3456


Q ss_pred             HHHHHHHHcCcccccCCCCCCCcHHHH-HHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 007741          280 EVVKLLLEADAAIVMLPDKFGNTALHV-ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLP  345 (591)
Q Consensus       280 ~~v~~Ll~~~~~~~~~~d~~g~T~Lh~-A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~  345 (591)
                      +++++|+++|++ ++.+|.+|+||||. |+..++.+++++|++ .|++++.+|..|+||||+|...+
T Consensus       139 ~iv~~Li~~gad-in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~-~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        139 NVIKLLIDSGVS-FLNKDFDNNNILYSYILFHSDKKIFDFLTS-LGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHHcCCC-cccccCCCCcHHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhhh
Confidence            677777766666 56666777777774 445566777777776 36777777777777777776544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3.8e-26  Score=217.08  Aligned_cols=173  Identities=14%  Similarity=0.147  Sum_probs=144.2

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcC--CHHHHHHHHhcCcccccccCCCCCcHHHHH
Q 007741          196 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG--HVDVVKALLSKDPQLARRTDKKGQTALHMA  273 (591)
Q Consensus       196 ~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  273 (591)
                      ..+.||||.|+..|+.+.++.|++.    .+..|..|.||||+|+..+  +.+++++|++.|+++....+..|+||||+|
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            3457888888888888888888865    3446788999999999854  899999999999999443335899999998


Q ss_pred             HhC---CCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH--cCcHHHHHHHhcCCCCCcccccCCCCCHHHHH-hhCCCC
Q 007741          274 VKG---QSCEVVKLLLEADAAIVMLPDKFGNTALHVATR--KKRTEIVTELLSLPDTNVNALTRDHKTALDIA-EGLPSS  347 (591)
Q Consensus       274 ~~~---~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~--~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A-~~~~~~  347 (591)
                      +..   ++.+++++|+++|++ ++.+|..|.||||+|+.  .++.+++++|++ .|++++.+|..|.||||.+ ...+  
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~-~gadin~~d~~g~t~Lh~~a~~~~--  170 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLID-SGVSFLNKDFDNNNILYSYILFHS--  170 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCcccccCCCCcHHHHHHHhcC--
Confidence            753   579999999999998 89999999999999986  468999999998 5999999999999999964 5555  


Q ss_pred             hhhHHHHHHHHhcCcccccccCCchHHhhhh
Q 007741          348 EEASEIKDCLARCGAVRANELNQPRDELRKT  378 (591)
Q Consensus       348 ~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~  378 (591)
                        ..+++++|++.|++..........++.-.
T Consensus       171 --~~~iv~~Ll~~Gadi~~~d~~g~tpl~la  199 (209)
T PHA02859        171 --DKKIFDFLTSLGIDINETNKSGYNCYDLI  199 (209)
T ss_pred             --CHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence              78999999999998877666666666544

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.7e-25  Score=228.38  Aligned_cols=226  Identities=15%  Similarity=0.106  Sum_probs=186.1

Q ss_pred             hcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCcc----CccCCCCCChHHHHHHH--hCcHHHHHHHHhCCCCCc
Q 007741          118 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEG----LTRKNRSGFDPLHIAAV--QGHHAIVQVLLDHDPSLS  191 (591)
Q Consensus       118 ~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~----~~~~~~~g~t~Lh~A~~--~g~~~iv~~Ll~~~~~~~  191 (591)
                      ++..+|..+.+|     +|+..+..|+++.|+.+|++.+    .-.++..++|+||.|+.  .|+.++|++|+++|+++.
T Consensus        71 ~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn  145 (437)
T PHA02795         71 HRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIY  145 (437)
T ss_pred             cCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCC
Confidence            466777777776     9999999999999999988755    11467779999999999  899999999999999984


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceec-----CCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCC
Q 007741          192 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS-----RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG  266 (591)
Q Consensus       192 ~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~-----~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g  266 (591)
                      .   ..+.||||.|+..|+.+++++|+.++....+..     +..+.+++|.|+..++.+++++|+++|+++ +.+|..|
T Consensus       146 ~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G  221 (437)
T PHA02795        146 K---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGG  221 (437)
T ss_pred             C---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCC
Confidence            3   345899999999999999999999965433322     234789999999999999999999999998 7789999


Q ss_pred             CcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcC--------cHHHHHHHhcCCCCCcccccCCCCCHH
Q 007741          267 QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK--------RTEIVTELLSLPDTNVNALTRDHKTAL  338 (591)
Q Consensus       267 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g--------~~~iv~~Ll~~~g~d~~~~d~~G~t~L  338 (591)
                      .||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|        +.+++++|++ .|++++..+..+   +
T Consensus       222 ~TpLh~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~-~gadI~~~~~~~---~  296 (437)
T PHA02795        222 RTLLYRAIYAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR-EPLSIDCIKLAI---L  296 (437)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh-CCCCCCchhHHh---h
Confidence            9999999999999999999999998 8999999999999999998        4699999998 488887654332   1


Q ss_pred             HHHhhCCCChhhHHHHHHHHhcCcc
Q 007741          339 DIAEGLPSSEEASEIKDCLARCGAV  363 (591)
Q Consensus       339 ~~A~~~~~~~~~~~i~~~L~~~ga~  363 (591)
                      .     ... ...++.+.+.++...
T Consensus       297 ~-----~~~-~n~~~ik~lI~y~~~  315 (437)
T PHA02795        297 N-----NTI-ENHDVIKLCIKYFMM  315 (437)
T ss_pred             h-----ccc-chHHHHHHHHHHHHh
Confidence            1     111 145677776666543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.94  E-value=7.1e-25  Score=231.62  Aligned_cols=270  Identities=14%  Similarity=0.071  Sum_probs=211.8

Q ss_pred             CCCCCcHhHHHHHcCCH----HHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHH-HHHhCcHHHH
Q 007741           71 GRHNDTELHLAAQRGDL----GAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFT-AADKGHIEVV  145 (591)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~-Aa~~g~~~~v  145 (591)
                      .-+|.||||.-..+.+.    +++-.|+.                         ..+..|.+|.+|+|. |..+|+.|+|
T Consensus        34 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~n~~~~~~~~~~~s~n~~lElv   88 (631)
T PHA02792         34 EYDGETPLKAYVTKKNNNIKNDVVILLLS-------------------------SVDYKNINDFDIFEYLCSDNIDIELL   88 (631)
T ss_pred             ccCCCccHHHHHhhhhhhHHHHHHHHHHh-------------------------CCCcCccCCccHHHHHHHhcccHHHH
Confidence            35677999998666552    24444433                         356678888899975 5678999999


Q ss_pred             HHHHhcCCCccCccCCCCCChHHHHHHH-hCcHHHHHHHHhCCCCCc---------------------------------
Q 007741          146 NELLKYSTKEGLTRKNRSGFDPLHIAAV-QGHHAIVQVLLDHDPSLS---------------------------------  191 (591)
Q Consensus       146 ~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~-~g~~~iv~~Ll~~~~~~~---------------------------------  191 (591)
                      ++|+++|++  ++.++..|.||+|+|+. .++.|++++|+++|++..                                 
T Consensus        89 k~LI~~GAd--vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (631)
T PHA02792         89 KLLISKGLE--INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDY  166 (631)
T ss_pred             HHHHHcCCC--cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhcccccccc
Confidence            999999875  56777789999999976 699999999999998631                                 


Q ss_pred             --ccCCCCCCCHHHHHHHcC-------CHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcC--CHHHHHHHHhc------
Q 007741          192 --QTTGPSNATPLVSAATRG-------HTAVVNELLSKDGGLLEISRSNGKNALHFAARQG--HVDVVKALLSK------  254 (591)
Q Consensus       192 --~~~~~~g~tpL~~A~~~g-------~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~------  254 (591)
                        +..|..|.||||+|+..+       +.|+++.|+.+ +..++..|..|.||||+|+.+.  +.|+++.|++.      
T Consensus       167 ~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~-g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        167 TTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISH-EKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             ccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhC-CCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccc
Confidence              123456999999999999       89999999999 5556778889999999999887  66666666542      


Q ss_pred             --------------------------------------------------------------------------------
Q 007741          255 --------------------------------------------------------------------------------  254 (591)
Q Consensus       255 --------------------------------------------------------------------------------  254 (591)
                                                                                                      
T Consensus       246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK  325 (631)
T PHA02792        246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK  325 (631)
T ss_pred             hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence                                                                                            


Q ss_pred             -----CcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCC--CcHHHHHHHcCcH---HHHHHHhcCCC
Q 007741          255 -----DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG--NTALHVATRKKRT---EIVTELLSLPD  324 (591)
Q Consensus       255 -----~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g--~T~Lh~A~~~g~~---~iv~~Ll~~~g  324 (591)
                           |++..   ...+..+++.|+..|+.+++++|+++|++ ++.+|.+|  .||||+|......   +++++|++ .|
T Consensus       326 ~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs-~G  400 (631)
T PHA02792        326 CMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP-YI  400 (631)
T ss_pred             HHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh-cC
Confidence                 11110   11245578889999999999999999998 67788775  6999998877654   45788888 49


Q ss_pred             CCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccccccCCchHHhhh
Q 007741          325 TNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRK  377 (591)
Q Consensus       325 ~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~  377 (591)
                      +|+|.+|..|+||||+|+..+    ..+++++|++.|++...........+..
T Consensus       401 ADIN~kD~~G~TPLh~Aa~~~----n~eivelLLs~GADIN~kD~~G~TpL~~  449 (631)
T PHA02792        401 DDINKIDKHGRSILYYCIESH----SVSLVEWLIDNGADINITTKYGSTCIGI  449 (631)
T ss_pred             CccccccccCcchHHHHHHcC----CHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            999999999999999999988    8899999999999877666555555543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.93  E-value=1.6e-25  Score=231.69  Aligned_cols=254  Identities=31%  Similarity=0.318  Sum_probs=215.6

Q ss_pred             cHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCc
Q 007741           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKE  155 (591)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~  155 (591)
                      +-|..|++.|+.+.+..+|+............         .+....|.+|.+|.|+||.|+.+|+.++++.|+++.+. 
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~---------trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~-   74 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFT---------TRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL-   74 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCC---------CCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh-
Confidence            56788999999999999998644321111111         12455778888999999999999999999999997654 


Q ss_pred             cCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcH
Q 007741          156 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA  235 (591)
Q Consensus       156 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tp  235 (591)
                       ++..+.+|.+|||+|++.|+.++++.|+.++.. .+..+..|.||||.|++.||.+++.+|+.+ +.+..+.++++.|+
T Consensus        75 -ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~-~adp~i~nns~~t~  151 (854)
T KOG0507|consen   75 -LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKK-NADPFIRNNSKETV  151 (854)
T ss_pred             -hhhhhccCcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhc-CCCccccCcccccH
Confidence             456678899999999999999999999999844 477888999999999999999999999998 45567789999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCccc-------ccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 007741          236 LHFAARQGHVDVVKALLSKDPQL-------ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  308 (591)
Q Consensus       236 Lh~A~~~g~~~~v~~Ll~~~~~~-------~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~  308 (591)
                      |..|++.|..++++.|++..-..       ...++-.+.+|||.|+++|+.++++.|++.|.+ +|.....| |+||.|+
T Consensus       152 ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d-in~~t~~g-talheaa  229 (854)
T KOG0507|consen  152 LDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD-INYTTEDG-TALHEAA  229 (854)
T ss_pred             HHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC-cccccccc-hhhhhHh
Confidence            99999999999999999862111       123455678999999999999999999999998 66666555 8999999


Q ss_pred             HcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 007741          309 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLP  345 (591)
Q Consensus       309 ~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~  345 (591)
                      ..|..++|.+|++ .|++.+++|.+|+|+|++..+..
T Consensus       230 lcgk~evvr~ll~-~gin~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  230 LCGKAEVVRFLLE-IGINTHIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             hcCcchhhhHHHh-hccccccccccchHHHHHHHhcc
Confidence            9999999999999 59999999999999999998776

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=9.2e-24  Score=238.98  Aligned_cols=242  Identities=23%  Similarity=0.268  Sum_probs=179.7

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHH-HHHHhCcHHHHHHHHhc
Q 007741           73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF-TAADKGHIEVVNELLKY  151 (591)
Q Consensus        73 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~-~Aa~~g~~~~v~~Ll~~  151 (591)
                      .++..++.||+.|+.+.++.+++...                    +.++|..|..|+|||| .|+.+++.++++.|+++
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~--------------------~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~   75 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPK--------------------KLNINCPDRLGRSALFVAAIENENLELTELLLNL   75 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhcccc--------------------ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhC
Confidence            34589999999999999999997632                    4567888999999999 89999999999999997


Q ss_pred             CCCccCccCCCCCChHHHHHHHh---CcHHHHHHHHhCCCCC---------cccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 007741          152 STKEGLTRKNRSGFDPLHIAAVQ---GHHAIVQVLLDHDPSL---------SQTTGPSNATPLVSAATRGHTAVVNELLS  219 (591)
Q Consensus       152 ~~~~~~~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~g~~~~v~~LL~  219 (591)
                      +.      .+..|.||||.|+..   +..++++.+...+++.         ....+..|.||||+|+.+|+.++++.|++
T Consensus        76 g~------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~  149 (743)
T TIGR00870        76 SC------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLE  149 (743)
T ss_pred             CC------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            64      567799999999872   2233444444444321         11123468999999999999999999998


Q ss_pred             cCCCcceecC--------------CCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCC--------
Q 007741          220 KDGGLLEISR--------------SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ--------  277 (591)
Q Consensus       220 ~~~~~~~~~~--------------~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~--------  277 (591)
                      ++ ++++..+              ..|.||||.|+..|+.+++++|++.++++ +..|..|+||||+|+..+        
T Consensus       150 ~G-Adv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~~g~T~Lh~A~~~~~~~~~~~~  227 (743)
T TIGR00870       150 RG-ASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTADSLGNTLLHLLVMENEFKAEYEE  227 (743)
T ss_pred             CC-CCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhhhhhHHHHHHHhhhhhhHHHHH
Confidence            84 4444321              35889999999999999999999988877 667888999999998876        


Q ss_pred             -CHHHHHHHHHcCccc------ccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhh
Q 007741          278 -SCEVVKLLLEADAAI------VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG  343 (591)
Q Consensus       278 -~~~~v~~Ll~~~~~~------~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~  343 (591)
                       ...+.+.+++.++..      .+..|.+|.||||+|+..|+.+++++|++. +.+.+......+.+.+.+..
T Consensus       228 l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~-~~~~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       228 LSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI-KYKQKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             HHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH-HHhcceeeccCcchHhHhhh
Confidence             223455555544331      155788899999999999999999998873 44444445556666665543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=2e-24  Score=220.60  Aligned_cols=209  Identities=18%  Similarity=0.064  Sum_probs=178.4

Q ss_pred             HHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCc-----ccCCCCCCCHHHHHHH--cCCHHHHHHH
Q 007741          145 VNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS-----QTTGPSNATPLVSAAT--RGHTAVVNEL  217 (591)
Q Consensus       145 v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~--~g~~~~v~~L  217 (591)
                      -++++.+|++.  +....+|     +|+..+..|+++.|+.+|++.+     -..+..++|+||+++.  .|+.+++++|
T Consensus        65 ~~~~~~~~~~i--~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~L  137 (437)
T PHA02795         65 YDYFRIHRDNI--DQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFM  137 (437)
T ss_pred             HHHHHHcCcch--hhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHH
Confidence            47888887654  4444444     9999999999999999999964     1467779999999999  8999999999


Q ss_pred             HhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCccccccc-----CCCCCcHHHHHHhCCCHHHHHHHHHcCccc
Q 007741          218 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT-----DKKGQTALHMAVKGQSCEVVKLLLEADAAI  292 (591)
Q Consensus       218 L~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-----d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~  292 (591)
                      +++ |++++.  .++.||||.|+..|+.+++++|+++|++..+..     +..+.+++|.|+.+++.+++++|+++|++ 
T Consensus       138 I~~-GADIn~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD-  213 (437)
T PHA02795        138 VDH-GAVIYK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED-  213 (437)
T ss_pred             HHC-CCCCCC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC-
Confidence            999 455554  456899999999999999999999997553433     23478999999999999999999999998 


Q ss_pred             ccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCC----ChhhHHHHHHHHhcCcccc
Q 007741          293 VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPS----SEEASEIKDCLARCGAVRA  365 (591)
Q Consensus       293 ~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~----~~~~~~i~~~L~~~ga~~~  365 (591)
                      +|.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..+.    ...+.+++++|++.|+...
T Consensus       214 IN~kD~~G~TpLh~Aa~~g~~eiVelLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        214 INQLDAGGRTLLYRAIYAGYIDLVSWLLE-NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             cCcCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            89999999999999999999999999999 599999999999999999998873    2335689999999998654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=1.5e-25  Score=199.34  Aligned_cols=204  Identities=26%  Similarity=0.350  Sum_probs=110.4

Q ss_pred             cCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHH
Q 007741          125 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS  204 (591)
Q Consensus       125 ~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  204 (591)
                      .+.+|.++++.|+-+|+.+.+..+|.+++..  +..+..+++|+.+++...+.+++..+.+.   ..+..|..|.|||.+
T Consensus        92 t~p~g~~~~~v~ap~~s~~k~sttltN~~rg--nevs~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiW  166 (296)
T KOG0502|consen   92 TDPEGWSALLVAAPCGSVDKVSTTLTNGARG--NEVSLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIW  166 (296)
T ss_pred             CCchhhhhhhhcCCCCCcceeeeeecccccC--CccccccCChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHH
Confidence            3444555666665555555555555544332  33444455555555555555555544442   223455555555555


Q ss_pred             HHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHH
Q 007741          205 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL  284 (591)
Q Consensus       205 A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~  284 (591)
                      |+..|+.++|++||+. +++++...+...++|.+|++.|..++|++|+.+++++ +..|.+|-|||-+|++.++.++++.
T Consensus       167 Aaa~G~i~vV~fLL~~-GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvkcve~  244 (296)
T KOG0502|consen  167 AAAKGHIPVVQFLLNS-GADPDALGKYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGNHVKCVES  244 (296)
T ss_pred             HHhcCchHHHHHHHHc-CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCChHHHHHH
Confidence            5555555555555555 3334444455555555555555555555555555555 4445555555555555555555555


Q ss_pred             HHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHH
Q 007741          285 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL  338 (591)
Q Consensus       285 Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L  338 (591)
                      |+..|++ ++..|..|++++.+|+..|+. +|+..++ .-++.+.+|+.-+||+
T Consensus       245 Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie-~h~lkl~Q~~~~~~~~  295 (296)
T KOG0502|consen  245 LLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIE-KHALKLCQDSEKRTPL  295 (296)
T ss_pred             HHhcCCC-cccccccCCcHHHHHHHhhhH-HHHHHHH-HHHHHHhhcccCCCCC
Confidence            5555555 555555555555555555555 4555544 2344445555444443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=1.2e-23  Score=238.17  Aligned_cols=227  Identities=23%  Similarity=0.230  Sum_probs=180.2

Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHH-HHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHH
Q 007741          127 ELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLH-IAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  205 (591)
Q Consensus       127 ~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh-~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  205 (591)
                      ..++.+++.|++.|+.+.|+.+++.+.+.+++..|..|+|||| .|+.+++.++++.|++++.     .+..|.||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            3568899999999999999999997555667888999999999 8999999999999999886     567899999999


Q ss_pred             HHcC---CHHHHHHHHhcCCCc---------ceecCCCCCcHHHHHHHcCCHHHHHHHHhcCccccccc-----------
Q 007741          206 ATRG---HTAVVNELLSKDGGL---------LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT-----------  262 (591)
Q Consensus       206 ~~~g---~~~~v~~LL~~~~~~---------~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-----------  262 (591)
                      +..+   ..+++..++......         ....+..|.||||+|+.+|+.++++.|+++|+++....           
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~  169 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGV  169 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCC
Confidence            8732   223334444332110         01123569999999999999999999999999884221           


Q ss_pred             --CCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcC---------cHHHHHHHhcC--CCCCc--
Q 007741          263 --DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK---------RTEIVTELLSL--PDTNV--  327 (591)
Q Consensus       263 --d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g---------~~~iv~~Ll~~--~g~d~--  327 (591)
                        ...|.||||.|+..|+.+++++|+++|++ ++.+|..|+||||+|+..+         ...+.++++..  .+.+.  
T Consensus       170 ~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~e  248 (743)
T TIGR00870       170 DSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKE  248 (743)
T ss_pred             CcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHh
Confidence              13589999999999999999999999997 8899999999999999986         23344555542  12333  


Q ss_pred             --ccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcc
Q 007741          328 --NALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  363 (591)
Q Consensus       328 --~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~  363 (591)
                        +..|++|.||||+|++.+    +.++.+.|++.+..
T Consensus       249 l~~i~N~~g~TPL~~A~~~g----~~~l~~lLL~~~~~  282 (743)
T TIGR00870       249 LEVILNHQGLTPLKLAAKEG----RIVLFRLKLAIKYK  282 (743)
T ss_pred             hhhhcCCCCCCchhhhhhcC----CccHHHHHHHHHHh
Confidence              778999999999999999    78888888876543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF13962 PGG: Domain of unknown function

Probab=99.92  E-value=3.9e-25  Score=187.40  Aligned_cols=108  Identities=36%  Similarity=0.595  Sum_probs=91.9

Q ss_pred             hhhhhhccccchhhHHHHHHHHHHhhccCCCCCCC----CCcchhcccc-chhHHHHhhHHHHHHHHHHHHHHhhccccc
Q 007741          412 REGINNATNSVTVVAVLFATVAFASIFTVPGGDDD----NGKAVVVRRA-SFKIFFIFNAIALFTSLAVVVVQITLVRGE  486 (591)
Q Consensus       412 ~e~~k~~~~s~~~~a~liat~~f~a~~~~pgg~~~----~g~~~~~~~~-~f~~f~~~~~~a~~~S~~~~~~~~~~~~~~  486 (591)
                      +||++++++++++||+|||||||||+||||||+|+    +|+|++.+++ .|++|+++|++||++|+++++++++.....
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~~~~   80 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGLDDF   80 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            36788899999999999999999999999999966    3999999887 899999999999999999999888423111


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007741          487 TKAEKRVVEVINKLMWLASVCTSVAFIASSYIV  519 (591)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~~  519 (591)
                      .+.++..+.....+||+++.+|++||++|+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   81 RRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            223334567778899999999999999999976

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=1.9e-24  Score=192.35  Aligned_cols=212  Identities=25%  Similarity=0.319  Sum_probs=191.0

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHH
Q 007741          126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  205 (591)
Q Consensus       126 n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  205 (591)
                      +..|+.-+-.|.+.|+.+++..++...++. ....+.+|+.++|.|+-.|+.+.+..++.++... +..+..+++|+.++
T Consensus        59 ~~lge~~~~~~~~s~nsd~~v~s~~~~~~~-~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~sls  136 (296)
T KOG0502|consen   59 NALGESLLTVAVRSGNSDVAVQSAQLDPDA-IDETDPEGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLS  136 (296)
T ss_pred             HhcCCcccchhhhcCCcHHHHHhhccCCCC-CCCCCchhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhHH
Confidence            556777788899999999998888765544 3456667999999999999999999999998887 56778899999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHH
Q 007741          206 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  285 (591)
Q Consensus       206 ~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  285 (591)
                      +.+.+.+.+..+.++   .++.+|..|.|||.+|+.+|+.++|++|++.|+++ ....+...++|.+|...|..++|++|
T Consensus       137 Vhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lL  212 (296)
T KOG0502|consen  137 VHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELL  212 (296)
T ss_pred             HHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHH
Confidence            999999888777744   56788999999999999999999999999999998 56688889999999999999999999


Q ss_pred             HHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 007741          286 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLP  345 (591)
Q Consensus       286 l~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~  345 (591)
                      ++++.+ +|..|-+|-|||-+|++.++.++++.||. .|+|++..+..|++++++|+..|
T Consensus       213 L~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~e~dsGy~~mdlAValG  270 (296)
T KOG0502|consen  213 LTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLN-SGADVTQEDDSGYWIMDLAVALG  270 (296)
T ss_pred             HhcCCC-cceeccCCCceeeeeecCChHHHHHHHHh-cCCCcccccccCCcHHHHHHHhh
Confidence            999999 89999999999999999999999999999 69999999999999999999998

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=9.2e-23  Score=232.11  Aligned_cols=178  Identities=24%  Similarity=0.255  Sum_probs=152.8

Q ss_pred             CCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHH
Q 007741          161 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA  240 (591)
Q Consensus       161 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~  240 (591)
                      +..+.++||.||..|+.++++.|++.|+++ +..|..|+||||+|+..|+.++++.|+++ +.+++..|.+|.||||.|+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKH-ACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCCCCcCCCCCCHHHHHH
Confidence            445678899999999999999999998887 56788899999999999999999999987 5667888889999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHh
Q 007741          241 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL  320 (591)
Q Consensus       241 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll  320 (591)
                      ..|+.++++.|++.++..   .+..|.++||.|+.+|+.++++.|+++|++ ++.+|.+|+||||+|+..|+.+++++|+
T Consensus       600 ~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~Ll  675 (823)
T PLN03192        600 SAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLLI  675 (823)
T ss_pred             HhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHHH
Confidence            999999999998876554   235577899999999999999999999988 7888999999999999999999999999


Q ss_pred             cCCCCCcccccCCC-CCHHHHHhhCC
Q 007741          321 SLPDTNVNALTRDH-KTALDIAEGLP  345 (591)
Q Consensus       321 ~~~g~d~~~~d~~G-~t~L~~A~~~~  345 (591)
                      + .|+|++..|..| .||++++....
T Consensus       676 ~-~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        676 M-NGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             H-cCCCCCCCCCCCCCCHHHHHHHHH
Confidence            8 589999999888 89988876543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=2.2e-22  Score=229.01  Aligned_cols=180  Identities=24%  Similarity=0.291  Sum_probs=161.1

Q ss_pred             cCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHH
Q 007741          125 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS  204 (591)
Q Consensus       125 ~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  204 (591)
                      .+..+.++||.||..|+.++++.|++.|.+  ++..|..|+||||+|+.+|+.++++.|+++|+++ +..|.+|.||||.
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d--~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~  597 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLD--PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWN  597 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHH
Confidence            344678999999999999999999998765  5778999999999999999999999999999997 6788999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHH
Q 007741          205 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL  284 (591)
Q Consensus       205 A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~  284 (591)
                      |+..|+.++++.|++.... .  ....|.++||.|+..|+.++++.|+++|+++ +..|.+|+||||+|+..|+.+++++
T Consensus       598 A~~~g~~~iv~~L~~~~~~-~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        598 AISAKHHKIFRILYHFASI-S--DPHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             HHHhCCHHHHHHHHhcCcc-c--CcccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHHHHHH
Confidence            9999999999999976432 2  2456789999999999999999999999998 6789999999999999999999999


Q ss_pred             HHHcCcccccCCCCCC-CcHHHHHHHcCc
Q 007741          285 LLEADAAIVMLPDKFG-NTALHVATRKKR  312 (591)
Q Consensus       285 Ll~~~~~~~~~~d~~g-~T~Lh~A~~~g~  312 (591)
                      |+++|++ ++..|..| .||++++.....
T Consensus       674 Ll~~GAd-v~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        674 LIMNGAD-VDKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             HHHcCCC-CCCCCCCCCCCHHHHHHHHHH
Confidence            9999998 78888888 999998865443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.88  E-value=1.1e-22  Score=210.70  Aligned_cols=226  Identities=30%  Similarity=0.321  Sum_probs=194.5

Q ss_pred             hccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHH
Q 007741           68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNE  147 (591)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~  147 (591)
                      ...|.+|.|.||.|+.+|+.++++.|++.                      .++++..|..|.+|||+|+..|+.++|+.
T Consensus        43 n~qd~~gfTalhha~Lng~~~is~llle~----------------------ea~ldl~d~kg~~plhlaaw~g~~e~vkm  100 (854)
T KOG0507|consen   43 NLQDYSGFTLLHHAVLNGQNQISKLLLDY----------------------EALLDLCDTKGILPLHLAAWNGNLEIVKM  100 (854)
T ss_pred             cccCccchhHHHHHHhcCchHHHHHHhcc----------------------hhhhhhhhccCcceEEehhhcCcchHHHH
Confidence            34567899999999999999999999986                      66678888999999999999999999999


Q ss_pred             HHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc---
Q 007741          148 LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL---  224 (591)
Q Consensus       148 Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~---  224 (591)
                      |+.++  ..++..+..|.||||.|+..||.+++.+|++++++. ...|..+.|+|..|++-|..++++.|+...-..   
T Consensus       101 ll~q~--d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~  177 (854)
T KOG0507|consen  101 LLLQT--DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSS  177 (854)
T ss_pred             HHhcc--cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHhhhccchhhc
Confidence            99976  456788899999999999999999999999999998 678889999999999999999999999762110   


Q ss_pred             ----ceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCC
Q 007741          225 ----LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG  300 (591)
Q Consensus       225 ----~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g  300 (591)
                          -...+..+.+|||.|+++||.++++.|++.|.++ +..... -|+||.|+..|..++|..|++.|.. ...+|.+|
T Consensus       178 ~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~di-n~~t~~-gtalheaalcgk~evvr~ll~~gin-~h~~n~~~  254 (854)
T KOG0507|consen  178 LRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDI-NYTTED-GTALHEAALCGKAEVVRFLLEIGIN-THIKNQHG  254 (854)
T ss_pred             ccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCc-cccccc-chhhhhHhhcCcchhhhHHHhhccc-cccccccc
Confidence                1234567889999999999999999999999998 443444 4899999999999999999999987 78899999


Q ss_pred             CcHHHHHHHc---CcHHHHHHHhc
Q 007741          301 NTALHVATRK---KRTEIVTELLS  321 (591)
Q Consensus       301 ~T~Lh~A~~~---g~~~iv~~Ll~  321 (591)
                      +|+|.+-...   ...+++-.+..
T Consensus       255 qtaldil~d~~~~~~~ei~ga~~~  278 (854)
T KOG0507|consen  255 QTALDIIIDLQENRRYEIAGAVKN  278 (854)
T ss_pred             hHHHHHHHhcchhhhhhhhhhhhc
Confidence            9999987765   34455555544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.87  E-value=7.3e-23  Score=217.34  Aligned_cols=272  Identities=27%  Similarity=0.302  Sum_probs=177.2

Q ss_pred             ccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHH
Q 007741           69 VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNEL  148 (591)
Q Consensus        69 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~L  148 (591)
                      ....+-+|+|..||+.|+.|.+..|+.+                      ++.+..+|+.|.+||.+|+..||..+|+.|
T Consensus       752 ~Te~n~~t~LT~acaggh~e~vellv~r----------------------ganiehrdkkgf~plImaatagh~tvV~~l  809 (2131)
T KOG4369|consen  752 LTEPNIKTNLTSACAGGHREEVELLVVR----------------------GANIEHRDKKGFVPLIMAATAGHITVVQDL  809 (2131)
T ss_pred             ccCccccccccccccCccHHHHHHHHHh----------------------cccccccccccchhhhhhcccCchHHHHHH
Confidence            3445566888999999999999888865                      555666666666666666666666666666


Q ss_pred             HhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcC-------
Q 007741          149 LKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD-------  221 (591)
Q Consensus       149 l~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~-------  221 (591)
                      +++.++.+ ...|+.+.|+|-+||..|..++|++||.+|++- ..++-...|||.+|...|..++|..||..+       
T Consensus       810 lk~ha~ve-aQsdrtkdt~lSlacsggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrt  887 (2131)
T KOG4369|consen  810 LKAHADVE-AQSDRTKDTMLSLACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRT  887 (2131)
T ss_pred             Hhhhhhhh-hhcccccCceEEEecCCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHHhhccccccccc
Confidence            66543322 334555666666666666666666666665553 333444455555555555555555555442       


Q ss_pred             ----------------------------CCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHH
Q 007741          222 ----------------------------GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA  273 (591)
Q Consensus       222 ----------------------------~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  273 (591)
                                                  .+.......+-+|+|.+|+..|+.+++.+||.+.+++ ..+-+.|-|||+-+
T Consensus       888 gSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anv-ehRaktgltplme~  966 (2131)
T KOG4369|consen  888 GSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANV-EHRAKTGLTPLMEM  966 (2131)
T ss_pred             ccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhh-hhhcccCCcccchh
Confidence                                        2211112233444555555555555555555555554 44566677777777


Q ss_pred             HhCCCHHHHHHHHHcCcccccCC-CCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHH
Q 007741          274 VKGQSCEVVKLLLEADAAIVMLP-DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASE  352 (591)
Q Consensus       274 ~~~~~~~~v~~Ll~~~~~~~~~~-d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~  352 (591)
                      +..|.+|+=++|+..|+|..... -..-.|+|-+++..||.+.++.|+. +.+.+..+|++|.|+|.+|+.-+    ...
T Consensus       967 AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln-~~atv~v~NkkG~T~Lwla~~Gg----~ls 1041 (2131)
T KOG4369|consen  967 ASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLN-GDATVRVPNKKGCTVLWLASAGG----ALS 1041 (2131)
T ss_pred             hcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhC-CccceecccCCCCcccchhccCC----ccc
Confidence            77777777777777777632211 1224578888888888888888888 58889999999999999999888    777


Q ss_pred             HHHHHHhcCcccccccCC
Q 007741          353 IKDCLARCGAVRANELNQ  370 (591)
Q Consensus       353 i~~~L~~~ga~~~~~~~~  370 (591)
                      ...+|.+.+++....++.
T Consensus      1042 s~~il~~~~ad~d~qdnr 1059 (2131)
T KOG4369|consen 1042 SCPILVSSVADADQQDNR 1059 (2131)
T ss_pred             cchHHhhcccChhhhhcc
Confidence            888899998886655543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=3.2e-22  Score=200.87  Aligned_cols=229  Identities=28%  Similarity=0.375  Sum_probs=187.7

Q ss_pred             cHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCc
Q 007741           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKE  155 (591)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~  155 (591)
                      -.+..|++.|+.+-+..||..                      +...+..|.+|.|+||-+|...+.+||++|++++++ 
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~----------------------ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~-   98 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNR----------------------GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGAN-   98 (527)
T ss_pred             HHHHhccccccHHHHHHHhcc----------------------CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCC-
Confidence            457789999999999999976                      455688999999999999999999999999998765 


Q ss_pred             cCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcH
Q 007741          156 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA  235 (591)
Q Consensus       156 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tp  235 (591)
                       ++..|..|+||||.|+..||..++++|+++|+++ ...+..|..|+..+......+++..-....+.          + 
T Consensus        99 -Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi----------~-  165 (527)
T KOG0505|consen   99 -VNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGI----------D-  165 (527)
T ss_pred             -ccccccccCCcchhhcccccHHHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcc----------c-
Confidence             6889999999999999999999999999999998 55677888888887766555555544443222          2 


Q ss_pred             HHHHHHc-CC---HHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcC
Q 007741          236 LHFAARQ-GH---VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK  311 (591)
Q Consensus       236 Lh~A~~~-g~---~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g  311 (591)
                      + -|++. ..   .+=+...+..|... ...+..|.|.||+|+.+|..++.++|+++|.+ ++.+|.+|+||||.|+..|
T Consensus       166 i-ea~R~~~e~~ml~D~~q~l~~G~~~-d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg  242 (527)
T KOG0505|consen  166 I-EAARKAEEQTMLDDARQWLNAGAEL-DARHARGATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWG  242 (527)
T ss_pred             H-HHHhhhhHHHHHHHHHHHHhccccc-cccccccchHHHHHHhhhHHHHHHHHHHhccC-cccccccCCCcccHHHHhh
Confidence            1 22221 11   12233334466665 44455599999999999999999999999998 8999999999999999999


Q ss_pred             cHHHHHHHhcCCCCCcccccCCCCCHHHHHhhC
Q 007741          312 RTEIVTELLSLPDTNVNALTRDHKTALDIAEGL  344 (591)
Q Consensus       312 ~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~  344 (591)
                      +.+++++|+++ |++.+..+..|.||+++|..-
T Consensus       243 ~~~~~elL~~~-ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  243 QEDACELLVEH-GADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             hHhHHHHHHHh-hcccchhhhcCCCCccchhhh
Confidence            99999988884 999999999999999999763

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=2e-21  Score=185.49  Aligned_cols=162  Identities=25%  Similarity=0.355  Sum_probs=91.6

Q ss_pred             hhccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHh-----Cc
Q 007741           67 KQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADK-----GH  141 (591)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~-----g~  141 (591)
                      .++.|.+|+|+||+|+.++|+++|+.||+..                     -+.++.+|+.|.||+++|+..     .+
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSg---------------------vC~VD~qNrAGYtpiMLaALA~lk~~~d  319 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSG---------------------VCDVDQQNRAGYTPVMLAALAKLKQPAD  319 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccC---------------------cccccccccccccHHHHHHHHhhcchhh
Confidence            3344556666666666666666666666542                     344556666666666665543     24


Q ss_pred             HHHHHHHHhcCCCccCccC-CCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 007741          142 IEVVNELLKYSTKEGLTRK-NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK  220 (591)
Q Consensus       142 ~~~v~~Ll~~~~~~~~~~~-~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~  220 (591)
                      .++|+.|.+.| +.  +.+ ...|+|+|++|+.+|+.++|+.||..|+++ +..|.+|.|+|++|+..||.|++++||..
T Consensus       320 ~~vV~~LF~mg-nV--NaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  320 RTVVERLFKMG-DV--NAKASQHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             HHHHHHHHhcc-Cc--chhhhhhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence            55555555543 21  222 234566666666666666666666666665 45555666666666666666666666665


Q ss_pred             CCCcceecCCCCCcHHHHHHHcCCHHHHHHHHh
Q 007741          221 DGGLLEISRSNGKNALHFAARQGHVDVVKALLS  253 (591)
Q Consensus       221 ~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~  253 (591)
                      ..++....|.+|.|+|.+|...||.||.-.|..
T Consensus       396 p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  396 PSCDISLTDVDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             CcccceeecCCCchhhhhHHhcCchHHHHHHHH
Confidence            555555556666666666666666665555543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=3.3e-21  Score=183.97  Aligned_cols=162  Identities=29%  Similarity=0.319  Sum_probs=146.6

Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHc-----CCHHHHHHHHhcCcccccccCCCC
Q 007741          192 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ-----GHVDVVKALLSKDPQLARRTDKKG  266 (591)
Q Consensus       192 ~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~-----g~~~~v~~Ll~~~~~~~~~~d~~g  266 (591)
                      +..|.+|+|+|||++..++.++|+.||+.+-++++..++-|+||+++++..     .+.++|..|.+.|. ++-.-...|
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAsQ~g  340 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKASQHG  340 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhhhhc
Confidence            567899999999999999999999999999999999999999999999863     56789999987754 434446789


Q ss_pred             CcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCC
Q 007741          267 QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPS  346 (591)
Q Consensus       267 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~  346 (591)
                      +|+|++|+.+|+.++|+.||..|++ +|.+|.+|.|+|++|+.+||.+++++||..+++|+...|.+|-|+|.+|.+.| 
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleag-  418 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAG-  418 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcC-
Confidence            9999999999999999999999999 99999999999999999999999999999999999999999999999999999 


Q ss_pred             ChhhHHHHHHHHh
Q 007741          347 SEEASEIKDCLAR  359 (591)
Q Consensus       347 ~~~~~~i~~~L~~  359 (591)
                         +.+|.-+|..
T Consensus       419 ---h~eIa~mlYa  428 (452)
T KOG0514|consen  419 ---HREIAVMLYA  428 (452)
T ss_pred             ---chHHHHHHHH
Confidence               6666655543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.84  E-value=2.4e-20  Score=160.23  Aligned_cols=151  Identities=29%  Similarity=0.279  Sum_probs=135.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHH
Q 007741          201 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE  280 (591)
Q Consensus       201 pL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  280 (591)
                      -+.+|+..+....|+.||+..+..++.+|.+|+||||-|+.+|+.++++.|+..|++. +.+...||||||-|++.++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchh
Confidence            4678999999999999999989999999999999999999999999999999999998 677889999999999999999


Q ss_pred             HHHHHHHcCcccccCCCCCCCcHHHHHHHcCcH-HHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHH
Q 007741          281 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRT-EIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEI  353 (591)
Q Consensus       281 ~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~-~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i  353 (591)
                      ++..|+++|++ +|...+...||||+|+...+. ..+++|+..+++++..+++.+.||+++|...+.++.-.++
T Consensus       145 va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lfe~  217 (228)
T KOG0512|consen  145 VAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLFEI  217 (228)
T ss_pred             HHHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHHHHH
Confidence            99999999999 888888899999999987654 5678888888999999999999999999987744333333

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=8.3e-20  Score=167.82  Aligned_cols=130  Identities=25%  Similarity=0.386  Sum_probs=107.7

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhc------CcccccccCCCCCcHHHHHHhCCC----HHHHHHHHHcCcccccCCC
Q 007741          228 SRSNGKNALHFAARQGHVDVVKALLSK------DPQLARRTDKKGQTALHMAVKGQS----CEVVKLLLEADAAIVMLPD  297 (591)
Q Consensus       228 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~------~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~~~~d  297 (591)
                      .+..|.||||+|++.|+.++++.|+..      ++++ +.+|..|+||||+|+..|+    .+++++|++.|++ ++.+|
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-in~~~   94 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-INAQE   94 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-CCCCC
Confidence            567788888888888888888887542      3444 6678889999999998888    5888899998888 67777


Q ss_pred             C-CCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcc
Q 007741          298 K-FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  363 (591)
Q Consensus       298 ~-~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~  363 (591)
                      . +|+||||+|+..++.+++++|+...|++++..|..|+||||+|...+    ..+++++|.+.++.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~----~~~iv~~L~~~~~~  157 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNE----DVAMMQILREIVAT  157 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCC----CHHHHHHHHHHHHH
Confidence            4 89999999999999999999987568899999999999999999888    77888888887665

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.82  E-value=7.2e-21  Score=202.38  Aligned_cols=288  Identities=21%  Similarity=0.193  Sum_probs=238.0

Q ss_pred             cchhhhccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccc------c-c---c--CCCcchhHHHHhhcccccccCCCCC
Q 007741           63 KKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMV------G-N---L--SGAEFDTEVAEIRSSVVNEVNELGE  130 (591)
Q Consensus        63 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~------~-~---~--~~~~~~~~~~~~~~~~~~~~n~~g~  130 (591)
                      +....+-+|+.|.+||.+|+-.||..+|+.||........      + .   .  .+.....++....++.-..+|-...
T Consensus       779 rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDy  858 (2131)
T KOG4369|consen  779 RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDY  858 (2131)
T ss_pred             hcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhc
Confidence            3455667889999999999999999999999965321110      0 0   0  1111222233334555566777889


Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC
Q 007741          131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH  210 (591)
Q Consensus       131 TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  210 (591)
                      |||-+|..-|..++++.|+..|...+-..-.+.|..||++|..+||.+.++.|++.|.+++.....+.+|+|-+|+..|+
T Consensus       859 tPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr  938 (2131)
T KOG4369|consen  859 TPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGR  938 (2131)
T ss_pred             CchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCc
Confidence            99999999999999999999887766666677899999999999999999999999999987777888999999999999


Q ss_pred             HHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccc-cCCCCCcHHHHHHhCCCHHHHHHHHHcC
Q 007741          211 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR-TDKKGQTALHMAVKGQSCEVVKLLLEAD  289 (591)
Q Consensus       211 ~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~-~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~  289 (591)
                      .+++..||.. ....+.+-+.|.|||+-++..|.+|+-+.|+..|+|.+.. ......|+|-+++..|+...++.|+...
T Consensus       939 ~evv~lLLa~-~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~ 1017 (2131)
T KOG4369|consen  939 PEVVFLLLAA-QANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGD 1017 (2131)
T ss_pred             chHHHHHHHH-hhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCc
Confidence            9999999988 4557778899999999999999999999999999987422 2345668999999999999999999988


Q ss_pred             cccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHH
Q 007741          290 AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCL  357 (591)
Q Consensus       290 ~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L  357 (591)
                      +. +..++++|+|+|.+|+..|+...+..|+++ ++|++..|+...+++.-|...+    +.+|++++
T Consensus      1018 at-v~v~NkkG~T~Lwla~~Gg~lss~~il~~~-~ad~d~qdnr~~S~~maafRKg----h~~iVk~m 1079 (2131)
T KOG4369|consen 1018 AT-VRVPNKKGCTVLWLASAGGALSSCPILVSS-VADADQQDNRTNSRTMAAFRKG----HFAIVKKM 1079 (2131)
T ss_pred             cc-eecccCCCCcccchhccCCccccchHHhhc-ccChhhhhcccccccHHHHHhc----hhheeccc
Confidence            77 888999999999999999999999999994 9999999999999999999888    44555443

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=2.1e-19  Score=165.16  Aligned_cols=136  Identities=20%  Similarity=0.269  Sum_probs=111.3

Q ss_pred             cccccCCCCCcHHHHHHHhCcHHHHHHHHhcC----CCccCccCCCCCChHHHHHHHhCc----HHHHHHHHhCCCCCcc
Q 007741          121 VVNEVNELGETALFTAADKGHIEVVNELLKYS----TKEGLTRKNRSGFDPLHIAAVQGH----HAIVQVLLDHDPSLSQ  192 (591)
Q Consensus       121 ~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~----~~~~~~~~~~~g~t~Lh~A~~~g~----~~iv~~Ll~~~~~~~~  192 (591)
                      +++.+|..|.||||+|++.|+.++++.|+...    .+.+++.+|..|+||||+|+..|+    .+++++|+++|+++. 
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin-   91 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN-   91 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC-
Confidence            46677889999999999999999999986532    124567888899999999999998    588899999988874 


Q ss_pred             cCC-CCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcc
Q 007741          193 TTG-PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ  257 (591)
Q Consensus       193 ~~~-~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  257 (591)
                      ..+ ..|.||||+|+..++.+++++|+...+.+++..|.+|.||||+|+..++.++++.|++.++.
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            445 47889999999999999999888755667777888888888888888888888888876544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.81  E-value=3.4e-19  Score=162.99  Aligned_cols=137  Identities=15%  Similarity=0.219  Sum_probs=91.8

Q ss_pred             CCCCCCHHHHHHHcCCH----HHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHH---HHHHHhcCcccccccC-CCC
Q 007741          195 GPSNATPLVSAATRGHT----AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV---VKALLSKDPQLARRTD-KKG  266 (591)
Q Consensus       195 ~~~g~tpL~~A~~~g~~----~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~---v~~Ll~~~~~~~~~~d-~~g  266 (591)
                      +..+.+++|.|++.|+.    +++++|++. +..++..|.+|+||||+|+..|+.+.   +++|++.|+++ +.+| ..|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g   94 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGD-GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTG   94 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCC
Confidence            34455666666666665    333344433 34455566677777777777766443   67777777776 4445 467


Q ss_pred             CcHHHHHHhCCCHHHHHHHHH-cCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCC
Q 007741          267 QTALHMAVKGQSCEVVKLLLE-ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK  335 (591)
Q Consensus       267 ~t~Lh~A~~~~~~~~v~~Ll~-~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~  335 (591)
                      +||||+|+..++.+++++|++ .+++ ++.+|..|.||||+|+..++.+++++|++ .|++++.++..|.
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~  162 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRA-NGAVCDDPLSIGL  162 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcccCCc
Confidence            777777777777777777774 5665 66677777788888777777777777777 4777777776664

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.80  E-value=6.1e-18  Score=178.29  Aligned_cols=191  Identities=27%  Similarity=0.358  Sum_probs=146.2

Q ss_pred             CcHHHHHHHhCcHHHHHHHHhcCC-------CccCccCCCCCChHHHHHHH---hCcHHHHHHHHhCCCCCccc----CC
Q 007741          130 ETALFTAADKGHIEVVNELLKYST-------KEGLTRKNRSGFDPLHIAAV---QGHHAIVQVLLDHDPSLSQT----TG  195 (591)
Q Consensus       130 ~TpL~~Aa~~g~~~~v~~Ll~~~~-------~~~~~~~~~~g~t~Lh~A~~---~g~~~iv~~Ll~~~~~~~~~----~~  195 (591)
                      +.++..|...+..+....|++.+.       +.+++.+...|.|.||.|..   .++.++++.|++..|.+.+.    ..
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            367777777777777777766542       23345555667888888875   34557888888877765432    23


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCccee---------cC--------------CCCCcHHHHHHHcCCHHHHHHHH
Q 007741          196 PSNATPLVSAATRGHTAVVNELLSKDGGLLEI---------SR--------------SNGKNALHFAARQGHVDVVKALL  252 (591)
Q Consensus       196 ~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~---------~~--------------~~g~tpLh~A~~~g~~~~v~~Ll  252 (591)
                      ..|.||||.|+.+.+.++|++|++.++ +++.         .|              -.|..||..||-.++.|++++|+
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gA-DV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGA-DVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCC-chhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            457888888888888888888887633 2221         01              14788999999999999999999


Q ss_pred             hcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcc-cccCCCCCCCcHHHHHHHcCcHHHHHHHhcC
Q 007741          253 SKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA-IVMLPDKFGNTALHVATRKKRTEIVTELLSL  322 (591)
Q Consensus       253 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~-~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~  322 (591)
                      ++++|+ +.+|..|+|.||..+..-..++..+++++|+. ....+++.|-|||-+|++.|+.++.+.+++.
T Consensus       261 ~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  261 AHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             hcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999998 77899999999999999899999999998876 3556788899999999999999999999985

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=6.2e-19  Score=161.28  Aligned_cols=144  Identities=17%  Similarity=0.146  Sum_probs=110.4

Q ss_pred             cccccccCCCCCcHHHHHHHhCcH----HHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHH---HHHHHhCCCCCc
Q 007741          119 SSVVNEVNELGETALFTAADKGHI----EVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI---VQVLLDHDPSLS  191 (591)
Q Consensus       119 ~~~~~~~n~~g~TpL~~Aa~~g~~----~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~i---v~~Ll~~~~~~~  191 (591)
                      +...+..+.++.++||.||+.|+.    +++++|++.+.  .++.+|..|+||||+|+..|+.+.   +++|+++|++++
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~--~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin   87 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGH--LLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN   87 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcch--hhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC
Confidence            455666778888999999999998    55556666553  356778889999999999887654   788999988874


Q ss_pred             ccCC-CCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCC
Q 007741          192 QTTG-PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG  266 (591)
Q Consensus       192 ~~~~-~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g  266 (591)
                       ..+ ..|.||||+|+..|+.+++++|+...+.+++..+..|.||||+|+..++.+++++|+++++++ +..+..|
T Consensus        88 -~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~  161 (166)
T PHA02743         88 -ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC-DDPLSIG  161 (166)
T ss_pred             -CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcccCC
Confidence             444 578888888888888888888886446667777888888888888888888888888888777 3434444

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=6.4e-19  Score=159.59  Aligned_cols=137  Identities=18%  Similarity=0.173  Sum_probs=105.6

Q ss_pred             ccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCC-----CccCccCCCCCChHHHHHHHhCcH---HHHHHHHhCCCCCc
Q 007741          120 SVVNEVNELGETALFTAADKGHIEVVNELLKYST-----KEGLTRKNRSGFDPLHIAAVQGHH---AIVQVLLDHDPSLS  191 (591)
Q Consensus       120 ~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~-----~~~~~~~~~~g~t~Lh~A~~~g~~---~iv~~Ll~~~~~~~  191 (591)
                      ...+.+|.+|.||||+|++.|+.  ++.+...+.     ...+...|..|.||||+|+..|+.   +++++|+++|++++
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc
Confidence            34667788999999999999984  333322211     112345688899999999999886   46888999998874


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCccc
Q 007741          192 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL  258 (591)
Q Consensus       192 ~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  258 (591)
                      ...+..|.||||+|+..|+.+++++|+.+.+.+++..|..|.||||+|+..|+.+++++|++.|+++
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4333588899999999999999999887656677788888899999999888888888888887764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=7.2e-19  Score=159.24  Aligned_cols=129  Identities=29%  Similarity=0.392  Sum_probs=80.9

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcC------cccccccCCCCCcHHHHHHhCCCH---HHHHHHHHcCcccccCCC-
Q 007741          228 SRSNGKNALHFAARQGHVDVVKALLSKD------PQLARRTDKKGQTALHMAVKGQSC---EVVKLLLEADAAIVMLPD-  297 (591)
Q Consensus       228 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~------~~~~~~~d~~g~t~Lh~A~~~~~~---~~v~~Ll~~~~~~~~~~d-  297 (591)
                      .|.+|.||||+|++.|+.  +..+...+      +......|..|+||||+|+..|+.   +++++|++.|++ ++.+| 
T Consensus        13 ~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-in~~~~   89 (154)
T PHA02736         13 PDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-INGKER   89 (154)
T ss_pred             cCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-ccccCC
Confidence            455666666666666652  22221111      111234466677777777776665   346667777766 55565 


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcc
Q 007741          298 KFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  363 (591)
Q Consensus       298 ~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~  363 (591)
                      ..|+||||+|+..|+.+++++|+...|++++.+|..|+||||+|...+    ..+++++|+..|++
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~----~~~i~~~Ll~~ga~  151 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERH----DAKMMNILRAKGAQ  151 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcC----CHHHHHHHHHcCCC
Confidence            367777777777777777777776456777777777777777777666    66677777776664

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=1.7e-18  Score=174.21  Aligned_cols=220  Identities=25%  Similarity=0.321  Sum_probs=172.1

Q ss_pred             HHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH
Q 007741          132 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT  211 (591)
Q Consensus       132 pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  211 (591)
                      .+.-|+..|..+-|+.|+..+.+.  +..|.+|.|+||-+|.-.+.+||++|+++|+++ +..|..|+||||.|+..||.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~--~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP--NLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc--cccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccH
Confidence            466678899999999999987554  778889999999999999999999999999998 67888999999999999999


Q ss_pred             HHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCc
Q 007741          212 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK-DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA  290 (591)
Q Consensus       212 ~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  290 (591)
                      .++++|+.+ ++.+...+.+|..|+..+..--..+++..-... +.++...+....++-|+        ++-.++ ..|.
T Consensus       120 ~i~~~li~~-gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~--------D~~q~l-~~G~  189 (527)
T KOG0505|consen  120 NIVEYLIQH-GANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLD--------DARQWL-NAGA  189 (527)
T ss_pred             HHHHHHHHh-hhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHH--------HHHHHH-hccc
Confidence            999999988 455556688888888887665555554443322 22221111111112221        222333 3565


Q ss_pred             ccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccccccCC
Q 007741          291 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQ  370 (591)
Q Consensus       291 ~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~  370 (591)
                      . ....+..|-|.||.|+.+|..++.++|++ .|.+++.+|.+|+||||.|+..+    ..+..++|.++|++.......
T Consensus       190 ~-~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg----~~~~~elL~~~ga~~d~~t~~  263 (527)
T KOG0505|consen  190 E-LDARHARGATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWG----QEDACELLVEHGADMDAKTKM  263 (527)
T ss_pred             c-ccccccccchHHHHHHhhhHHHHHHHHHH-hccCcccccccCCCcccHHHHhh----hHhHHHHHHHhhcccchhhhc
Confidence            5 66777779999999999999999999999 59999999999999999999999    888999999999986654433

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.77  E-value=9.7e-18  Score=165.30  Aligned_cols=156  Identities=13%  Similarity=0.171  Sum_probs=91.3

Q ss_pred             ccCCCCCc-HHHHHHHhCcHHHHHHHHhcCCCccCcc--CCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCC
Q 007741          124 EVNELGET-ALFTAADKGHIEVVNELLKYSTKEGLTR--KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT  200 (591)
Q Consensus       124 ~~n~~g~T-pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~--~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t  200 (591)
                      ..|..|.| +||.|+..|+.+++++|+++|++.+...  .+..|.||||+|+..|+.+++++|+++|+++....+..|.|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            34555554 3444555567777777777665543211  13466777777777777777777777777664333445666


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHH
Q 007741          201 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE  280 (591)
Q Consensus       201 pL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  280 (591)
                      |||.|+..|+.+++++|++. +++++..|.+|.||||+|+..++.+++..+...      ..+..+.+|++++   ++.+
T Consensus       107 pLh~Aa~~~~~eivklLL~~-GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~n~e  176 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSY-GADINIQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHPKKIL---INFD  176 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccChhhhh---ccHH
Confidence            66666666666666666666 445555666666666666666666655444321      1244455565554   2456


Q ss_pred             HHHHHHHcC
Q 007741          281 VVKLLLEAD  289 (591)
Q Consensus       281 ~v~~Ll~~~  289 (591)
                      +++.|+.++
T Consensus       177 i~~~Lish~  185 (300)
T PHA02884        177 ILKILVSHF  185 (300)
T ss_pred             HHHHHHHHH
Confidence            666666554

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.75  E-value=2.7e-17  Score=162.21  Aligned_cols=128  Identities=17%  Similarity=0.155  Sum_probs=66.0

Q ss_pred             CCCCCCh-HHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHH
Q 007741          160 KNRSGFD-PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF  238 (591)
Q Consensus       160 ~~~~g~t-~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~  238 (591)
                      +|..|.| +||.|+..|+.+++++|+++|+++.. .+.                              ..+..|.||||+
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~-~~~------------------------------~sd~~g~TpLh~   76 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEA-PFP------------------------------LSENSKTNPLIY   76 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccc-cCc------------------------------ccCCCCCCHHHH
Confidence            4444443 44455555666777777776666532 110                              012345555555


Q ss_pred             HHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHH
Q 007741          239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE  318 (591)
Q Consensus       239 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~  318 (591)
                      |+..|+.+++++|+++|+++....+..|.||||+|+..++.+++++|+++|++ ++.+|..|.||||+|++.++.+++..
T Consensus        77 Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~  155 (300)
T PHA02884         77 AIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFM  155 (300)
T ss_pred             HHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHH
Confidence            55555555555555555555221233455555555555555555555555555 45555555555555555555554433


Q ss_pred             H
Q 007741          319 L  319 (591)
Q Consensus       319 L  319 (591)
                      +
T Consensus       156 ~  156 (300)
T PHA02884        156 I  156 (300)
T ss_pred             h
Confidence            3

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.74  E-value=1.5e-18  Score=160.79  Aligned_cols=151  Identities=28%  Similarity=0.382  Sum_probs=127.4

Q ss_pred             HHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHH
Q 007741          206 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  285 (591)
Q Consensus       206 ~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  285 (591)
                      |+.|+.--++.-|+....+.+..|..|.+|||+|++.|+..+++.|+.+|+.+ +..+....||||+|+.+|+.++|+.|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHH
Confidence            34454444555566656778888999999999999999999999999999998 67788889999999999999999999


Q ss_pred             HHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcc
Q 007741          286 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  363 (591)
Q Consensus       286 l~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~  363 (591)
                      ++..++ +|..+..|+||||+|+..|...+.+-|+. .|+.+++.|++|.|||+.|.-.-    ...+.+.-.+.|..
T Consensus        87 l~~kad-vnavnehgntplhyacfwgydqiaedli~-~ga~v~icnk~g~tpldkakp~l----~~~l~e~aek~gq~  158 (448)
T KOG0195|consen   87 LSRKAD-VNAVNEHGNTPLHYACFWGYDQIAEDLIS-CGAAVNICNKKGMTPLDKAKPML----KNTLLEIAEKHGQS  158 (448)
T ss_pred             HHHhcc-cchhhccCCCchhhhhhhcHHHHHHHHHh-ccceeeecccCCCCchhhhchHH----HHHHHHHHHHhCCC
Confidence            999998 89999999999999999999999999999 69999999999999999985332    33344444455544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.74  E-value=3.1e-17  Score=141.26  Aligned_cols=146  Identities=26%  Similarity=0.295  Sum_probs=122.8

Q ss_pred             cHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCc
Q 007741           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKE  155 (591)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~  155 (591)
                      -.+.+|+..|.+..|+.||+..                     ...+|.+|.+|.||||.|+.+||.++|+.|+..|++ 
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~---------------------an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-  122 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEK---------------------ANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-  122 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhc---------------------cccccccccccccHHHHHHhcCchHHHHHHHHccCC-
Confidence            4577899999999999999763                     456899999999999999999999999999998766 


Q ss_pred             cCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC-HHHHHHHHhcCCCcceecCCCCCc
Q 007741          156 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH-TAVVNELLSKDGGLLEISRSNGKN  234 (591)
Q Consensus       156 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~~~v~~LL~~~~~~~~~~~~~g~t  234 (591)
                       ...+...|+||||-||.-.+.+++-.||++|+++ +.......||||.|+...+ ...+.+|+..........+..+.|
T Consensus       123 -~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eet  200 (228)
T KOG0512|consen  123 -KEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEET  200 (228)
T ss_pred             -cccccccCccchhhhhcccchhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccch
Confidence             4678889999999999999999999999999998 5555677899999997665 456677776656666667888999


Q ss_pred             HHHHHHHcCCH
Q 007741          235 ALHFAARQGHV  245 (591)
Q Consensus       235 pLh~A~~~g~~  245 (591)
                      |+.+|-+.+-.
T Consensus       201 a~~iARRT~~s  211 (228)
T KOG0512|consen  201 AFDIARRTSMS  211 (228)
T ss_pred             HHHHHHHhhhh
Confidence            99998877543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.73  E-value=1.5e-15  Score=160.46  Aligned_cols=189  Identities=28%  Similarity=0.292  Sum_probs=157.7

Q ss_pred             ChHHHHHHHhCcHHHHHHHHhCC---------CCCcccCCCCCCCHHHHHHH---cCCHHHHHHHHhcCCCccee----c
Q 007741          165 FDPLHIAAVQGHHAIVQVLLDHD---------PSLSQTTGPSNATPLVSAAT---RGHTAVVNELLSKDGGLLEI----S  228 (591)
Q Consensus       165 ~t~Lh~A~~~g~~~iv~~Ll~~~---------~~~~~~~~~~g~tpL~~A~~---~g~~~~v~~LL~~~~~~~~~----~  228 (591)
                      +.++..|...+..+..+.|+..+         .++ +.+...|.|.||.|..   .++.++++.|++..+..++.    .
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~-~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~e  180 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKL-NERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSE  180 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhcc-ccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhH
Confidence            36788888888888888777765         233 4456789999999986   45679999999875543332    1


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCcccccc--------cCC--------------CCCcHHHHHHhCCCHHHHHHHH
Q 007741          229 RSNGKNALHFAARQGHVDVVKALLSKDPQLARR--------TDK--------------KGQTALHMAVKGQSCEVVKLLL  286 (591)
Q Consensus       229 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~--------~d~--------------~g~t~Lh~A~~~~~~~~v~~Ll  286 (591)
                      .-.|.||||+|+.+.+.++|++|++.|+|+..+        .|.              .|..||.+||.-++.|++++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            347999999999999999999999999997421        121              3678999999999999999999


Q ss_pred             HcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCC--cccccCCCCCHHHHHhhCCCChhhHHHHHHHHhc
Q 007741          287 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN--VNALTRDHKTALDIAEGLPSSEEASEIKDCLARC  360 (591)
Q Consensus       287 ~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d--~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~  360 (591)
                      ++|+| ++.+|.+|||.||..+..-..++..++|++ |++  ...+|++|.|||.+|++.|    ..+|.+.+++.
T Consensus       261 ~~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~-ga~~l~~v~N~qgLTPLtLAaklG----k~emf~~ile~  330 (782)
T KOG3676|consen  261 AHGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALEL-GANALEHVRNNQGLTPLTLAAKLG----KKEMFQHILER  330 (782)
T ss_pred             hcCCC-CCccccCCChHHHHHHHHHHHHHHHHHHhc-CCCccccccccCCCChHHHHHHhh----hHHHHHHHHHh
Confidence            99999 999999999999999999999999999995 888  9999999999999999999    77777666665

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.63  E-value=1.7e-15  Score=123.33  Aligned_cols=89  Identities=44%  Similarity=0.586  Sum_probs=74.2

Q ss_pred             HHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHH
Q 007741          236 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI  315 (591)
Q Consensus       236 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~i  315 (591)
                      ||+|++.|+.+++++|++.+.++..     |+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHcCCHHH
Confidence            7889999999999999988776622     88899999999999999999998887 78888889999999999999999


Q ss_pred             HHHHhcCCCCCccccc
Q 007741          316 VTELLSLPDTNVNALT  331 (591)
Q Consensus       316 v~~Ll~~~g~d~~~~d  331 (591)
                      +++|+++ |++++.+|
T Consensus        75 ~~~Ll~~-g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEH-GADVNIRN   89 (89)
T ss_dssp             HHHHHHT-TT-TTSS-
T ss_pred             HHHHHHc-CCCCCCcC
Confidence            9999985 88888775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.61  E-value=6.8e-16  Score=143.29  Aligned_cols=133  Identities=33%  Similarity=0.474  Sum_probs=91.9

Q ss_pred             HHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHH
Q 007741          137 ADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNE  216 (591)
Q Consensus       137 a~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  216 (591)
                      |+.|+.--|+.-|+. ...+++.-|..|.+|||+||+.|+..+++.|+.+|+.+ +..+....||||.|+..||-++++.
T Consensus         8 cregna~qvrlwld~-tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDD-TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhcCCeEEEEEEecC-cccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHH
Confidence            344444334433332 22345666777888888888888888888888887776 4555566677777777777777777


Q ss_pred             HHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHH
Q 007741          217 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA  273 (591)
Q Consensus       217 LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  273 (591)
                      ||.. .++++..+..|.||||+||.-|...+++-|+..|+.+ +..+++|.|||..|
T Consensus        86 ll~~-kadvnavnehgntplhyacfwgydqiaedli~~ga~v-~icnk~g~tpldka  140 (448)
T KOG0195|consen   86 LLSR-KADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKA  140 (448)
T ss_pred             HHHH-hcccchhhccCCCchhhhhhhcHHHHHHHHHhcccee-eecccCCCCchhhh
Confidence            7766 4556667777777777777777777777777777766 55677777777766

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.61  E-value=1.9e-14  Score=124.61  Aligned_cols=124  Identities=39%  Similarity=0.589  Sum_probs=85.5

Q ss_pred             cCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHH
Q 007741          125 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS  204 (591)
Q Consensus       125 ~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  204 (591)
                      .|..|.||||+|+..|+.+++++|++.+...  ...+..|.||||.|+..++.+++++|++.++.+ ...+..|.||+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~--~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~   79 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV--NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHL   79 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHH
Confidence            3566778888888888888888888766443  556667777888888877778888887777654 3445666677777


Q ss_pred             HHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHH
Q 007741          205 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL  252 (591)
Q Consensus       205 A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll  252 (591)
                      |+..++.+++++|+.++ ...+..+..|.||++.|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            77777777777777653 334445566667777777666666666653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.59  E-value=2.9e-14  Score=123.42  Aligned_cols=88  Identities=42%  Similarity=0.666  Sum_probs=36.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 007741          230 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR  309 (591)
Q Consensus       230 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~  309 (591)
                      ..|.+|||.|+..++.+++++|++.++.. +..+..|.||+|+|++.++.+++++|++.+.+ .+..|..|.||+|+|..
T Consensus        38 ~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~  115 (126)
T cd00204          38 NDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAK  115 (126)
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHh
Confidence            33444444444444444444444443322 22233444444444444444444444444332 33334444444444444


Q ss_pred             cCcHHHHHHH
Q 007741          310 KKRTEIVTEL  319 (591)
Q Consensus       310 ~g~~~iv~~L  319 (591)
                      .++.+++++|
T Consensus       116 ~~~~~~~~~L  125 (126)
T cd00204         116 NGHLEVVKLL  125 (126)
T ss_pred             cCCHHHHHHh
Confidence            4444444443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.55  E-value=3e-14  Score=116.01  Aligned_cols=84  Identities=40%  Similarity=0.623  Sum_probs=43.3

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHH
Q 007741          202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV  281 (591)
Q Consensus       202 L~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~  281 (591)
                      ||+|++.|+.+++++|++.+ ...+.    |.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~-~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG-ADINL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT-STTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCc-CCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHH
Confidence            44555555555555555532 21111    455555555555555555555555555 4445555555555555555555


Q ss_pred             HHHHHHcCcc
Q 007741          282 VKLLLEADAA  291 (591)
Q Consensus       282 v~~Ll~~~~~  291 (591)
                      +++|+++|++
T Consensus        75 ~~~Ll~~g~~   84 (89)
T PF12796_consen   75 VKLLLEHGAD   84 (89)
T ss_dssp             HHHHHHTTT-
T ss_pred             HHHHHHcCCC
Confidence            5555555554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.51  E-value=6.2e-13  Score=128.06  Aligned_cols=129  Identities=33%  Similarity=0.484  Sum_probs=94.8

Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCC-----HHHHHHHHhcCc--ccccccCC
Q 007741          192 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH-----VDVVKALLSKDP--QLARRTDK  264 (591)
Q Consensus       192 ~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~-----~~~v~~Ll~~~~--~~~~~~d~  264 (591)
                      ...+..+.++++.++..+..+.+.+++..+.. ++..+.+|.||||+|+..++     .++++.|++.++  +.....|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCC-cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            34455567777777777777777777766433 37777777777777777777     777777777777  45566677


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcC
Q 007741          265 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL  322 (591)
Q Consensus       265 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~  322 (591)
                      .|+||||+|+..|+.++++.|++.+++ ++..+..|.|+++.|+..++.++++.++..
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            778888888877777777777777776 666677778888888888887777777763

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.49  E-value=1.2e-12  Score=126.06  Aligned_cols=131  Identities=36%  Similarity=0.408  Sum_probs=121.9

Q ss_pred             ceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCC-----HHHHHHHHHcCc--ccccCCC
Q 007741          225 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS-----CEVVKLLLEADA--AIVMLPD  297 (591)
Q Consensus       225 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~v~~Ll~~~~--~~~~~~d  297 (591)
                      ....+..+.+++|.++..+..+++.+++..+.++ +..|..|.||||+|+..++     .++++.|++.|+  +..+.+|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            3445677999999999999999999999999999 8889999999999999999     999999999999  6788889


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcC
Q 007741          298 KFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG  361 (591)
Q Consensus       298 ~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g  361 (591)
                      ..|+||||+|+..|+.++++.|++ .|++++.+|..|.|+++.|...+    ..++.+.+.+.+
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~l~~a~~~~----~~~~~~~l~~~~  203 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNG----RIELVKLLLDKG  203 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHh-cCCCCcccccCCCcchhhhcccc----hHHHHHHHHhcC
Confidence            999999999999999999999999 59999999999999999999999    788888888776

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.46  E-value=4.4e-13  Score=103.39  Aligned_cols=104  Identities=21%  Similarity=0.316  Sum_probs=91.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHH
Q 007741          235 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE  314 (591)
Q Consensus       235 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~  314 (591)
                      -+.+++++|..+-|+..+..|-+++..  ..|++|||+|+..|+.+++++|+..|++ ++.+|+.|-|||--|+..||.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhhHH
Confidence            467888999999999999888777433  3799999999999999999999999998 8889999999999999999999


Q ss_pred             HHHHHhcCCCCCcccccCCCCCHHHHHh
Q 007741          315 IVTELLSLPDTNVNALTRDHKTALDIAE  342 (591)
Q Consensus       315 iv~~Ll~~~g~d~~~~d~~G~t~L~~A~  342 (591)
                      +|++||+ .|+|-..+-.+|.+.++.+.
T Consensus        82 cVklLL~-~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   82 CVKLLLQ-NGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHHH-cCcccceeCCCchhHHhhcc
Confidence            9999999 59999999999988877654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.42  E-value=6.9e-13  Score=102.34  Aligned_cols=102  Identities=26%  Similarity=0.434  Sum_probs=78.4

Q ss_pred             CcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 007741           75 DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTK  154 (591)
Q Consensus        75 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~  154 (591)
                      +..+.+++.+|..+-|+..+..                      +.++|.+- .|+||||+||-+|+.+++++|+..|++
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~----------------------g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~   59 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNE----------------------GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGAN   59 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHc----------------------cccHHHHh-CCcccchHhhhcchHHHHHHHHHhccc
Confidence            3457788888999888888765                      43444443 688999999999999999999887755


Q ss_pred             ccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHH
Q 007741          155 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPL  202 (591)
Q Consensus       155 ~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  202 (591)
                        ++.+|+.|.|||..|+..||.++|++||+.|++- .....+|.+.+
T Consensus        60 --i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdr-t~~~PdG~~~~  104 (117)
T KOG4214|consen   60 --IQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADR-TIHAPDGTALI  104 (117)
T ss_pred             --cCCccccCCcHHHHHHHHhhHHHHHHHHHcCccc-ceeCCCchhHH
Confidence              5778888899999999999999999999988875 44455564443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=3.4e-12  Score=127.87  Aligned_cols=118  Identities=25%  Similarity=0.358  Sum_probs=88.9

Q ss_pred             hHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccC
Q 007741           78 LHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGL  157 (591)
Q Consensus        78 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~  157 (591)
                      |.-|+..|.+|+|+.++.+                      -.+....|..|-|+||-|+..||.+||++|++.|+  ++
T Consensus       554 LLDaaLeGEldlVq~~i~e----------------------v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ga--nV  609 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE----------------------VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGA--NV  609 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh----------------------hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCC--cc
Confidence            4558888888888888865                      33456678888888888888888888888888664  46


Q ss_pred             ccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHH--HcCCHHHHHHHHh
Q 007741          158 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA--TRGHTAVVNELLS  219 (591)
Q Consensus       158 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~LL~  219 (591)
                      +..|.+|+||||.|+.+++.-+++.|++.|+.+-...-.++.|+...+-  ..|...+.++|..
T Consensus       610 Na~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  610 NAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             cCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            7788888888888888888888888888888775555556667665543  4566667777664

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.31  E-value=1.4e-12  Score=95.41  Aligned_cols=56  Identities=43%  Similarity=0.512  Sum_probs=31.5

Q ss_pred             HHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHH
Q 007741          285 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA  341 (591)
Q Consensus       285 Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A  341 (591)
                      |+++++..++.+|..|+||||+|+.+|+.+++++|++ .|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            5677755588899999999999999999999999995 6999999999999999987

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.31  E-value=1.2e-11  Score=115.45  Aligned_cols=122  Identities=25%  Similarity=0.311  Sum_probs=108.5

Q ss_pred             CcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 007741           75 DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTK  154 (591)
Q Consensus        75 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~  154 (591)
                      ..||..++..|+.+....||..                      ...+|.+|..|.|+|..|+..|+.++|+.||+.|++
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~----------------------vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaD   70 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST----------------------VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGAD   70 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH----------------------hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCC
Confidence            4799999999999999999975                      445889999999999999999999999999999988


Q ss_pred             ccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 007741          155 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK  220 (591)
Q Consensus       155 ~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~  220 (591)
                      .+. .++..+.||||+|+.+|+.++.++|++.|+.. ...+.-|+|+-.+|+.-||.++|..+-++
T Consensus        71 vN~-~qhg~~YTpLmFAALSGn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   71 VND-KQHGTLYTPLMFAALSGNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cCc-ccccccccHHHHHHHcCCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            763 45667899999999999999999999999987 66788899999999999999998766544

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.26  E-value=1.3e-11  Score=89.72  Aligned_cols=54  Identities=43%  Similarity=0.575  Sum_probs=31.5

Q ss_pred             CCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHh
Q 007741          266 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL  320 (591)
Q Consensus       266 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll  320 (591)
                      |+||||+|++.|+.+++++|++.+.+ ++.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45666666666666666666666655 5556666666666666666666666664

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.26  E-value=2.1e-11  Score=135.29  Aligned_cols=105  Identities=29%  Similarity=0.324  Sum_probs=60.9

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCH
Q 007741          200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC  279 (591)
Q Consensus       200 tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  279 (591)
                      ..|+.|+..|+.+.++.|++. +.+++..|.+|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcH
Confidence            345566666666666666655 3344555666666666666666666666666666665 44566666666666666666


Q ss_pred             HHHHHHHHc-------CcccccCCCCCCCcHHHHH
Q 007741          280 EVVKLLLEA-------DAAIVMLPDKFGNTALHVA  307 (591)
Q Consensus       280 ~~v~~Ll~~-------~~~~~~~~d~~g~T~Lh~A  307 (591)
                      +++++|+++       +++ .+..+..|.+|+..+
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHhCCCcccccCCC-CCccccCCCCccchh
Confidence            666666655       333 344444555554433

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.25  E-value=3.4e-11  Score=112.33  Aligned_cols=123  Identities=25%  Similarity=0.300  Sum_probs=108.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCC
Q 007741          198 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ  277 (591)
Q Consensus       198 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  277 (591)
                      -..||.-++..|..+....||.. -..++..|.+|.++|..|+..|+.++++.|++.|+|++...+..+.||||+|+-.|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            35788889999999988888876 44567789999999999999999999999999999998888899999999999999


Q ss_pred             CHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcC
Q 007741          278 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL  322 (591)
Q Consensus       278 ~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~  322 (591)
                      +.++.++|++.|+. ....+.-|+|+-.+|+.-|+.++|..+=++
T Consensus        91 n~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99999999999987 677788899999999999999999876543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.23  E-value=2.7e-11  Score=121.56  Aligned_cols=105  Identities=28%  Similarity=0.319  Sum_probs=60.6

Q ss_pred             HHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHH
Q 007741          237 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV  316 (591)
Q Consensus       237 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv  316 (591)
                      .-|+..|.+|+|+.++..-.|+ ...+..|-|+||-|+..|+.+||++|++.|++ +|..|.+||||||+|+..++..++
T Consensus       555 LDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcCchHHH
Confidence            3355566666666666554444 34455666666666666666666666666665 566666666666666666666666


Q ss_pred             HHHhcCCCCCcccccCCCCCHHHHHhh
Q 007741          317 TELLSLPDTNVNALTRDHKTALDIAEG  343 (591)
Q Consensus       317 ~~Ll~~~g~d~~~~d~~G~t~L~~A~~  343 (591)
                      +.|++.+++-.-..=.++.||.+-...
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee  659 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEE  659 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcch
Confidence            666664322233333455666555444

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.22  E-value=2.4e-11  Score=88.42  Aligned_cols=54  Identities=41%  Similarity=0.532  Sum_probs=42.2

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHH
Q 007741           74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELL  149 (591)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll  149 (591)
                      |.||||.|++.|+.+++++|++.                      +..++.+|.+|.||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~----------------------~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH----------------------GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT----------------------TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC----------------------CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            57899999999999999999976                      5668888999999999999999999999886

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.20  E-value=1.4e-11  Score=90.08  Aligned_cols=56  Identities=43%  Similarity=0.506  Sum_probs=24.8

Q ss_pred             HHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 007741          251 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA  307 (591)
Q Consensus       251 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A  307 (591)
                      |+++++...+..|..|.||||+|++.|+.+++++|++.+++ ++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-CCCCcCCCCCHHHhC
Confidence            45555333366677777777777777777777777766666 677777777777765

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.18  E-value=9e-11  Score=130.34  Aligned_cols=105  Identities=28%  Similarity=0.400  Sum_probs=87.5

Q ss_pred             HhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCcc
Q 007741           77 ELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEG  156 (591)
Q Consensus        77 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~  156 (591)
                      .|+.|+..|+.+.++.|++.                      +..+|.+|..|.||||+|+..|+.+++++|+++|++  
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~----------------------Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad--  140 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTG----------------------GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD--  140 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHC----------------------CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC--
Confidence            58899999999999999976                      667888999999999999999999999999998755  


Q ss_pred             CccCCCCCChHHHHHHHhCcHHHHHHHHhC-------CCCCcccCCCCCCCHHHHHH
Q 007741          157 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-------DPSLSQTTGPSNATPLVSAA  206 (591)
Q Consensus       157 ~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~-------~~~~~~~~~~~g~tpL~~A~  206 (591)
                      ++.+|..|.||||+|+..|+.+++++|+++       +++. ...+..|.+|+..+.
T Consensus       141 vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        141 PTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANA-KPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCC-CccccCCCCccchhh
Confidence            567888999999999999999999999988       5554 344555666655443

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.89  E-value=1.2e-08  Score=103.49  Aligned_cols=120  Identities=26%  Similarity=0.261  Sum_probs=104.2

Q ss_pred             hHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccC
Q 007741           78 LHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGL  157 (591)
Q Consensus        78 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~  157 (591)
                      +..|+..+|+-.+.....+                      +..+-.++.+..|.||+|+..|+-|+|+|+|++++.+.+
T Consensus       870 il~av~~~D~~klqE~h~~----------------------gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~ell  927 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLN----------------------GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELL  927 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhc----------------------CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHH
Confidence            6678888886555554433                      444666788899999999999999999999999999889


Q ss_pred             ccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 007741          158 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK  220 (591)
Q Consensus       158 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~  220 (591)
                      +..|..|.|+||.|+..++-.+.++|++.|+.+ ...|..|.||-..|-..|+.+...||-..
T Consensus       928 d~~de~get~lhkaa~~~~r~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  928 DMADETGETALHKAACQRNRAVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHhhhhhHHHHHHHHhcchHHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999999999999999999999999998 77889999999999999999999888654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.67  E-value=1.5e-08  Score=107.18  Aligned_cols=142  Identities=23%  Similarity=0.272  Sum_probs=96.5

Q ss_pred             HHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccC
Q 007741          216 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML  295 (591)
Q Consensus       216 ~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~  295 (591)
                      ++-..+....++.|..|+|+||+|+..+..+++++|+++|.++.......|+||||-|+..|+.+++..||.+|.. +..
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-L~i  114 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-LRI  114 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc-eEE
Confidence            3334466667888999999999999999999999999999988666556799999999999999999999999987 788


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCc
Q 007741          296 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA  362 (591)
Q Consensus       296 ~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga  362 (591)
                      +|++|.+||..-.+-....+.- -+.. ..|+-.--.+-+.-|-++  .+.....++.++++...|.
T Consensus       115 ~Dkeglsplq~~~r~~~~~i~~-~~d~-pndvy~wG~N~N~tLGig--n~~~~~~Pe~Vdlf~~Sg~  177 (1267)
T KOG0783|consen  115 KDKEGLSPLQFLSRVLSSTIHP-VLDL-PNDVYGWGTNVNNTLGIG--NGKEPSSPERVDLFKTSGQ  177 (1267)
T ss_pred             ecccCCCHHHHHhhcccccccc-ccCC-ccceeEeccccccccccc--CCCCCCChHHhHHHHhccH
Confidence            8999999998877643322221 1111 122221111112223333  3333446778877776654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.61  E-value=9.3e-08  Score=97.11  Aligned_cols=96  Identities=28%  Similarity=0.320  Sum_probs=87.0

Q ss_pred             ccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHH
Q 007741           69 VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNEL  148 (591)
Q Consensus        69 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~L  148 (591)
                      .++.+..+.||+|+..|+-++|+++|+..+                    .++++..|+.|+|+||-|+..++-.++.+|
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p--------------------~elld~~de~get~lhkaa~~~~r~vc~~l  953 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGP--------------------SELLDMADETGETALHKAACQRNRAVCQLL  953 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCC--------------------HHHHHHHhhhhhHHHHHHHHhcchHHHHHH
Confidence            456677799999999999999999999877                    788999999999999999999999999999


Q ss_pred             HhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhC
Q 007741          149 LKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH  186 (591)
Q Consensus       149 l~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  186 (591)
                      ++.|+.  +...|..|.||-.-|-..|..+++.+|-.+
T Consensus       954 vdagas--l~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  954 VDAGAS--LRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             Hhcchh--heecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            997654  678899999999999999999999998654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.61  E-value=3.1e-08  Score=98.78  Aligned_cols=94  Identities=21%  Similarity=0.192  Sum_probs=86.6

Q ss_pred             CCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 007741          263 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  342 (591)
Q Consensus       263 d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~  342 (591)
                      +.++..++.+|++.|++..++.+.-.|.+ ++.+|.+.+|+||.|+..|+.+++++|++..++|++.+|..|+||||-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            34566789999999999999999998888 88999999999999999999999999999999999999999999999999


Q ss_pred             hCCCChhhHHHHHHHHhcC
Q 007741          343 GLPSSEEASEIKDCLARCG  361 (591)
Q Consensus       343 ~~~~~~~~~~i~~~L~~~g  361 (591)
                      ..+    +.+++++|.+.-
T Consensus       582 ~F~----h~~v~k~L~~~~  596 (622)
T KOG0506|consen  582 HFK----HKEVVKLLEEAQ  596 (622)
T ss_pred             hcC----cHHHHHHHHHHh
Confidence            998    888999887753

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.58  E-value=4.1e-08  Score=103.99  Aligned_cols=95  Identities=25%  Similarity=0.288  Sum_probs=66.2

Q ss_pred             HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecC-CCCCcHHHHHHHcCCHHHHHHHHhcCcc
Q 007741          179 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFAARQGHVDVVKALLSKDPQ  257 (591)
Q Consensus       179 iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  257 (591)
                      +.-++-..+.++.+..|..|+|+||+|+..|..+++++||++ +.++..+| ..|+||||-|+..|+.|++-.||.+|..
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhc-CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            334455556666677777777777777777777777777777 55555554 3577777777777777777777777766


Q ss_pred             cccccCCCCCcHHHHHHh
Q 007741          258 LARRTDKKGQTALHMAVK  275 (591)
Q Consensus       258 ~~~~~d~~g~t~Lh~A~~  275 (591)
                      + ...|++|..||...++
T Consensus       112 L-~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 L-RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             e-EEecccCCCHHHHHhh
Confidence            6 5667777777776654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.57  E-value=1.7e-07  Score=94.06  Aligned_cols=93  Identities=26%  Similarity=0.277  Sum_probs=83.1

Q ss_pred             cCCCCCc------HHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCC
Q 007741          228 SRSNGKN------ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN  301 (591)
Q Consensus       228 ~~~~g~t------pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~  301 (591)
                      +|.+|.+      -||..++.|+.+..-.|+..|++.+......|.||||+|++.|+..-+++|+-+|++ ++..|.+|.
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~Gm  201 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGM  201 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCC
Confidence            4555555      489999999999999999999999777788999999999999999999999999999 889999999


Q ss_pred             cHHHHHHHcCcHHHHHHHhc
Q 007741          302 TALHVATRKKRTEIVTELLS  321 (591)
Q Consensus       302 T~Lh~A~~~g~~~iv~~Ll~  321 (591)
                      ||+.+|-..||.++.+.|++
T Consensus       202 tP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  202 TPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             cHHHHHHhcCchHHHHHHHH
Confidence            99999999999998887765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.51  E-value=3.7e-07  Score=91.67  Aligned_cols=94  Identities=24%  Similarity=0.209  Sum_probs=78.4

Q ss_pred             cCCCCCc------HHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCC
Q 007741          262 TDKKGQT------ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK  335 (591)
Q Consensus       262 ~d~~g~t------~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~  335 (591)
                      +|.+|.+      -||..++.|+.+..-.|+..|++....--..|+||||.|++.|+..-+++|+- .|+|++..|.+|+
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~Gm  201 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSSGM  201 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCCCC
Confidence            3555554      49999999999999999999998444444579999999999999999999988 5999999999999


Q ss_pred             CHHHHHhhCCCChhhHHHHHH
Q 007741          336 TALDIAEGLPSSEEASEIKDC  356 (591)
Q Consensus       336 t~L~~A~~~~~~~~~~~i~~~  356 (591)
                      ||+++|...|+.+....++++
T Consensus       202 tP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  202 TPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             cHHHHHHhcCchHHHHHHHHH
Confidence            999999999965554444443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.50  E-value=1.1e-07  Score=94.92  Aligned_cols=92  Identities=28%  Similarity=0.348  Sum_probs=84.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 007741          229 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  308 (591)
Q Consensus       229 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~  308 (591)
                      +.++..++.+|++.|++..++.+.-.+.++ +..|.+.+|+||+|+..|+.+++++|++.....++.+|.+|+|||.-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            345677899999999999999999999998 7789999999999999999999999999877668999999999999999


Q ss_pred             HcCcHHHHHHHhc
Q 007741          309 RKKRTEIVTELLS  321 (591)
Q Consensus       309 ~~g~~~iv~~Ll~  321 (591)
                      ..+|.+++++|-+
T Consensus       582 ~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  582 HFKHKEVVKLLEE  594 (622)
T ss_pred             hcCcHHHHHHHHH
Confidence            9999999998876

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.44  E-value=4.8e-07  Score=92.18  Aligned_cols=113  Identities=27%  Similarity=0.328  Sum_probs=88.5

Q ss_pred             cHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCc
Q 007741           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKE  155 (591)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~  155 (591)
                      .|||.++...+.+-+...+....                    ...++..|..|+||||+|+..|+.+.++.|+..+++ 
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~--------------------~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-   80 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKV--------------------SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-   80 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhh--------------------hceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-
Confidence            46999999999988888765421                    556889999999999999999999999999997654 


Q ss_pred             cCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 007741          156 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD  221 (591)
Q Consensus       156 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~  221 (591)
                       +..+|.+|++|||.|+..|+.+++..++.+.......           -...+...+++.|.+..
T Consensus        81 -v~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~~~q~~~-----------~~~~~~p~ll~~l~~~~  134 (560)
T KOG0522|consen   81 -VSIKNNEGWSPLHEAVSTGNEQIITEVLRHLKYQAWE-----------KWERRLPRLLAKLSEMP  134 (560)
T ss_pred             -ccccccccccHHHHHHHcCCHHHHHHHHHHhHHHHHH-----------HHHhcchHHHHHHHhCc
Confidence             6889999999999999999999999888864332111           11334466666666653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.36  E-value=5e-07  Score=56.28  Aligned_cols=25  Identities=44%  Similarity=0.627  Sum_probs=13.3

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCC
Q 007741          129 GETALFTAADKGHIEVVNELLKYST  153 (591)
Q Consensus       129 g~TpL~~Aa~~g~~~~v~~Ll~~~~  153 (591)
                      |+||||+||+.|+.|+|++|+++|+
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~ga   26 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGA   26 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            4555555555555555555555443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.36  E-value=4.4e-07  Score=58.23  Aligned_cols=33  Identities=36%  Similarity=0.497  Sum_probs=25.4

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccC
Q 007741          299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTR  332 (591)
Q Consensus       299 ~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~  332 (591)
                      +|+||||+|+..|+.+++++|++ .|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence            47788888888888888888887 4788777764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.35  E-value=5.9e-07  Score=55.98  Aligned_cols=28  Identities=43%  Similarity=0.739  Sum_probs=24.2

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHhCCCCC
Q 007741          163 SGFDPLHIAAVQGHHAIVQVLLDHDPSL  190 (591)
Q Consensus       163 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  190 (591)
                      +|+||||+||..|+.+++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4788999999999999999999988876

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.25  E-value=2.5e-06  Score=87.11  Aligned_cols=89  Identities=21%  Similarity=0.338  Sum_probs=76.9

Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC
Q 007741          131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH  210 (591)
Q Consensus       131 TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  210 (591)
                      -|||.++.....+-...++.......++..|..|.||||+|+..|+.+.++.|+..++++ ...|..|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            469999988877766665543355567888999999999999999999999999999998 7789999999999999999


Q ss_pred             HHHHHHHHhc
Q 007741          211 TAVVNELLSK  220 (591)
Q Consensus       211 ~~~v~~LL~~  220 (591)
                      .+++..+|.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            9999988876

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.22  E-value=2.4e-06  Score=87.50  Aligned_cols=89  Identities=28%  Similarity=0.236  Sum_probs=74.2

Q ss_pred             HHHHHhCCCHHHHHHHHHcCcc---cccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCC
Q 007741          270 LHMAVKGQSCEVVKLLLEADAA---IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPS  346 (591)
Q Consensus       270 Lh~A~~~~~~~~v~~Ll~~~~~---~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~  346 (591)
                      |.-|+...++..+-+||.+|..   .....+.+|.|+||+|++.|+..+.++|+- .|+|+..+|..|+|+|.||.+.+ 
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~-  705 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAG-  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhcc-
Confidence            5567777777888888887732   233456678999999999999999999996 69999999999999999999999 


Q ss_pred             ChhhHHHHHHHHhcCcc
Q 007741          347 SEEASEIKDCLARCGAV  363 (591)
Q Consensus       347 ~~~~~~i~~~L~~~ga~  363 (591)
                         ..+..++|+++|--
T Consensus       706 ---sqec~d~llq~gcp  719 (749)
T KOG0705|consen  706 ---SQECIDVLLQYGCP  719 (749)
T ss_pred             ---cHHHHHHHHHcCCC
Confidence               88999999999864

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.20  E-value=4.6e-06  Score=90.01  Aligned_cols=126  Identities=21%  Similarity=0.278  Sum_probs=103.2

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCC--ccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHH
Q 007741          126 NELGETALFTAADKGHIEVVNELLKYSTK--EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLV  203 (591)
Q Consensus       126 n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~--~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  203 (591)
                      ...++--...|+++|+.-.|+..++....  .+++..|.-|+++|++|+.+.|.+++++|+++.-..        ..+|.
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL   93 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALL   93 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHH
Confidence            34455567789999999999999987554  567888999999999999999999999999986443        36999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcc---------eecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccc
Q 007741          204 SAATRGHTAVVNELLSKDGGLL---------EISRSNGKNALHFAARQGHVDVVKALLSKDPQLA  259 (591)
Q Consensus       204 ~A~~~g~~~~v~~LL~~~~~~~---------~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  259 (591)
                      +|+..|..+.++.++.+.....         ...-.-+.|||.+||..++.|+++.|+++|+.+.
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            9999999999999998732210         1122457899999999999999999999987763

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.19  E-value=9.8e-06  Score=87.57  Aligned_cols=122  Identities=26%  Similarity=0.285  Sum_probs=98.8

Q ss_pred             CcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 007741           75 DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTK  154 (591)
Q Consensus        75 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~  154 (591)
                      .-....|+..||...|+..++....                  ..-++|.+|.-|+++|++|+.+.+.|++++|+++...
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~------------------~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~   87 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAV------------------SKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE   87 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccc------------------cccchhccChHhhhceecccccccHHHHHHHhcCccc
Confidence            3456789999999999999986442                  1456899999999999999999999999999996422


Q ss_pred             ccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCc---------ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 007741          155 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS---------QTTGPSNATPLVSAATRGHTAVVNELLSKDGG  223 (591)
Q Consensus       155 ~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~---------~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~  223 (591)
                          .     ..+|.+|+..|..++|+.++.+.....         ...-..+.|||..||..++.|+++.||.++..
T Consensus        88 ----~-----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen   88 ----E-----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             ----c-----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence                1     359999999999999999999843321         12223467999999999999999999998544

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.15  E-value=3e-06  Score=54.29  Aligned_cols=26  Identities=42%  Similarity=0.585  Sum_probs=14.0

Q ss_pred             CCcHHHHHHhCCCHHHHHHHHHcCcc
Q 007741          266 GQTALHMAVKGQSCEVVKLLLEADAA  291 (591)
Q Consensus       266 g~t~Lh~A~~~~~~~~v~~Ll~~~~~  291 (591)
                      |+||||+|+..|+.+++++|+++|++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            45555555555555555555555554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.11  E-value=9e-06  Score=83.47  Aligned_cols=87  Identities=22%  Similarity=0.261  Sum_probs=42.8

Q ss_pred             HHHHHHhCcHHHHHHHHhCCCCC---cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCC
Q 007741          168 LHIAAVQGHHAIVQVLLDHDPSL---SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH  244 (591)
Q Consensus       168 Lh~A~~~g~~~iv~~Ll~~~~~~---~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~  244 (591)
                      |.-|+...+...+-+||.+|...   ....+.+|+|+||+||+.|++.+.++|+-+ +.+....|..|+|+|.||-..|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy-g~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY-GVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh-CccceecccCCchhhhhHhhccc
Confidence            33444444444555555544321   122233445555555555555555555533 44445555555555555555555


Q ss_pred             HHHHHHHHhcC
Q 007741          245 VDVVKALLSKD  255 (591)
Q Consensus       245 ~~~v~~Ll~~~  255 (591)
                      .+++..|+++|
T Consensus       707 qec~d~llq~g  717 (749)
T KOG0705|consen  707 QECIDVLLQYG  717 (749)
T ss_pred             HHHHHHHHHcC
Confidence            55555555554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.84  E-value=2.7e-05  Score=76.20  Aligned_cols=70  Identities=27%  Similarity=0.310  Sum_probs=58.2

Q ss_pred             cHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCc
Q 007741           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKE  155 (591)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~  155 (591)
                      --|..|++.|+.+.|++|++.                      +.++|.+|....+||.+|+.+||.++|++||++|+- 
T Consensus        38 ~elceacR~GD~d~v~~LVet----------------------gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi-   94 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVET----------------------GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI-   94 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHh----------------------CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc-
Confidence            468899999999999999985                      777999999999999999999999999999998864 


Q ss_pred             cCccCCCCCChHHH
Q 007741          156 GLTRKNRSGFDPLH  169 (591)
Q Consensus       156 ~~~~~~~~g~t~Lh  169 (591)
                       ......+|.-++.
T Consensus        95 -C~rdtf~G~RC~Y  107 (516)
T KOG0511|consen   95 -CSRDTFDGDRCHY  107 (516)
T ss_pred             -ccccccCcchhhh
Confidence             2333445655443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.81  E-value=1.9e-05  Score=87.24  Aligned_cols=128  Identities=23%  Similarity=0.228  Sum_probs=100.0

Q ss_pred             eecCCCCCcHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHH
Q 007741          226 EISRSNGKNALHFAARQGHVDVVKALLSK-DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL  304 (591)
Q Consensus       226 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~L  304 (591)
                      ......|++.+|+++..++.-+++.+++. +... ...|.+|...+|+++ .+..+..-+++.....-++.+|..|+|||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCccc
Confidence            33456799999999999999999999997 4443 456888999999955 46667777777655555899999999999


Q ss_pred             HHHHHcCcHHHHHHHhcCCCC------CcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhc
Q 007741          305 HVATRKKRTEIVTELLSLPDT------NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARC  360 (591)
Q Consensus       305 h~A~~~g~~~iv~~Ll~~~g~------d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~  360 (591)
                      |+|+.+|+..++..|+.. |+      |++..+-.|.|+-++|...+    +..+..+|.+.
T Consensus       646 ~wAa~~G~e~l~a~l~~l-ga~~~~~tdps~~~p~g~ta~~la~s~g----~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIEL-GADPGAVTDPSPETPGGKTAADLARANG----HKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHh-ccccccccCCCCCCCCCCchhhhhhccc----ccchHHHHhhh
Confidence            999999999999999863 33      35555667999999999888    44555555444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.80  E-value=5.5e-05  Score=67.29  Aligned_cols=70  Identities=29%  Similarity=0.344  Sum_probs=59.5

Q ss_pred             ccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCC
Q 007741          120 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL  190 (591)
Q Consensus       120 ~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  190 (591)
                      .++|.+|..|+|||++|+..|+.+.|.||+.+|. ..+...|..|.+++.+|-+.|+.+++..|.+...+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~-a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGV-AFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCc-ccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            4588899999999999999999999999999873 345778888999999999999999999998875544

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.76  E-value=2e-05  Score=87.71  Aligned_cols=80  Identities=38%  Similarity=0.379  Sum_probs=74.2

Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhh
Q 007741          264 KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG  343 (591)
Q Consensus       264 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~  343 (591)
                      ..|.|+||.|+..+..-+.++|+++|++ +|..|..|+||||.+...|+...+..|++ +|++.++.|.+|++|+++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHHhh
Confidence            4578999999999999999999999999 89999999999999999999999999998 699999999999999999987


Q ss_pred             CC
Q 007741          344 LP  345 (591)
Q Consensus       344 ~~  345 (591)
                      ..
T Consensus       732 ~~  733 (785)
T KOG0521|consen  732 AA  733 (785)
T ss_pred             hc
Confidence            74

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.76  E-value=4.3e-05  Score=84.51  Aligned_cols=122  Identities=20%  Similarity=0.104  Sum_probs=51.7

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhC
Q 007741          197 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG  276 (591)
Q Consensus       197 ~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  276 (591)
                      .|.+.+|.++..++.-.++.+++..+......|.+|...+|. |..++.+.+.+|+.....-.+.+|..|+||||+|+..
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~  651 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFR  651 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhc
Confidence            344555555555544444444443111122233444444444 2233334433333332222244455555555555555


Q ss_pred             CCHHHHHHHHHcCccc-----ccCCCCCCCcHHHHHHHcCcHHHHHHH
Q 007741          277 QSCEVVKLLLEADAAI-----VMLPDKFGNTALHVATRKKRTEIVTEL  319 (591)
Q Consensus       277 ~~~~~v~~Ll~~~~~~-----~~~~d~~g~T~Lh~A~~~g~~~iv~~L  319 (591)
                      |+..++..|++.|++-     +...+..|-|+-.+|..+|+..+.-+|
T Consensus       652 G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~l  699 (975)
T KOG0520|consen  652 GREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYL  699 (975)
T ss_pred             CHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHH
Confidence            5555555555443321     111222345555555555554444433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.74  E-value=2.8e-05  Score=86.55  Aligned_cols=89  Identities=29%  Similarity=0.341  Sum_probs=78.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 007741          230 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR  309 (591)
Q Consensus       230 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~  309 (591)
                      ..|.|+||.|+..|..-++++|++.|+++ +..|..|+||||.+...|+...+..++++|++ .+..|.+|.+||++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGAD-PNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcccccc-ccccCccCcchhhHHhh
Confidence            45799999999999999999999999996 78899999999999999999999999999988 88899999999999988


Q ss_pred             cCcHHHHHHHh
Q 007741          310 KKRTEIVTELL  320 (591)
Q Consensus       310 ~g~~~iv~~Ll  320 (591)
                      ..+.+++-++.
T Consensus       732 ~~~~d~~~l~~  742 (785)
T KOG0521|consen  732 AANADIVLLLR  742 (785)
T ss_pred             hccccHHHHHh
Confidence            76666665443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.58  E-value=0.00013  Score=65.04  Aligned_cols=62  Identities=29%  Similarity=0.256  Sum_probs=34.8

Q ss_pred             cccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhc
Q 007741          260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  321 (591)
Q Consensus       260 ~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~  321 (591)
                      +.+|..|||+|+.|+..|+.+.+.+|+++|...+-..|..|++++.+|-+.|..++++.|.+
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe   67 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFE   67 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHH
Confidence            44455555555555555555555555555543355555555555555555555555555554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.52  E-value=0.00025  Score=69.65  Aligned_cols=70  Identities=20%  Similarity=0.284  Sum_probs=55.5

Q ss_pred             HHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHH
Q 007741          132 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS  204 (591)
Q Consensus       132 pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  204 (591)
                      -|..||+.|+.+.|++|++.|  .+++..|+...+||.+|+..||.++|++|+++|+-- .....+|..+++-
T Consensus        39 elceacR~GD~d~v~~LVetg--vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~Yg  108 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETG--VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCHYG  108 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhC--CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhhhh
Confidence            488999999999999999954  557888888899999999999999999999998864 3333445444433

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.23  E-value=0.0007  Score=68.94  Aligned_cols=66  Identities=15%  Similarity=0.092  Sum_probs=53.6

Q ss_pred             CCCHHHHHHHHHcCccc-----ccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 007741          276 GQSCEVVKLLLEADAAI-----VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  342 (591)
Q Consensus       276 ~~~~~~v~~Ll~~~~~~-----~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~  342 (591)
                      ..-...+++|.+++.+.     +...|..-.|+||+|+..|..++|.+||+. |+|+..+|..|+||.+++.
T Consensus       401 ~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  401 KPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh-cCCchhcccCCCCcccccc
Confidence            34466788888876552     122345567999999999999999999995 7999999999999999986

>smart00248 ANK ankyrin repeats

Probab=95.79  E-value=0.016  Score=34.41  Aligned_cols=24  Identities=46%  Similarity=0.646  Sum_probs=14.1

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcC
Q 007741          129 GETALFTAADKGHIEVVNELLKYS  152 (591)
Q Consensus       129 g~TpL~~Aa~~g~~~~v~~Ll~~~  152 (591)
                      |.||||+|+..|+.++++.|++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            455666666666666666666543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.75  E-value=0.017  Score=34.38  Aligned_cols=27  Identities=41%  Similarity=0.742  Sum_probs=20.4

Q ss_pred             CChHHHHHHHhCcHHHHHHHHhCCCCC
Q 007741          164 GFDPLHIAAVQGHHAIVQVLLDHDPSL  190 (591)
Q Consensus       164 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  190 (591)
                      |.||+|+|+..++.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            567888888888888888888776654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.48  E-value=0.34  Score=43.70  Aligned_cols=72  Identities=10%  Similarity=0.052  Sum_probs=45.2

Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC
Q 007741          131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH  210 (591)
Q Consensus       131 TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  210 (591)
                      -.|.-|+.++...++++.-+...+.     -...++.+-.||+..+.|+|+|+-+.-.-      .+-.+-+..|....+
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhccc
Confidence            3566788888888887776643211     12356788888888888888888443111      122345566776666


Q ss_pred             HHH
Q 007741          211 TAV  213 (591)
Q Consensus       211 ~~~  213 (591)
                      .++
T Consensus       117 lsL  119 (192)
T PF03158_consen  117 LSL  119 (192)
T ss_pred             hhH
Confidence            655

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.75  E-value=0.076  Score=54.65  Aligned_cols=64  Identities=23%  Similarity=0.194  Sum_probs=51.3

Q ss_pred             HHHHHHHHhcCcccc-----cccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 007741          245 VDVVKALLSKDPQLA-----RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR  309 (591)
Q Consensus       245 ~~~v~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~  309 (591)
                      .+.+++|.+++.+.+     ...+..-.|+||+|+..|..+++.++|+.|+| +..+|..|.||..++..
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCccccccc
Confidence            566777777655442     22344467999999999999999999999977 88999999999999873

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.54  E-value=0.31  Score=45.23  Aligned_cols=28  Identities=32%  Similarity=0.413  Sum_probs=15.8

Q ss_pred             CCCCCcHHHHHHhCCCHHHHHHHHHcCc
Q 007741          263 DKKGQTALHMAVKGQSCEVVKLLLEADA  290 (591)
Q Consensus       263 d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  290 (591)
                      -+.|.|.|.-|++.++.+++..|+++|+
T Consensus       251 ~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  251 VNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            3445555555555555555555555554

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=92.80  E-value=0.91  Score=41.03  Aligned_cols=136  Identities=18%  Similarity=0.164  Sum_probs=79.3

Q ss_pred             HhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCcc
Q 007741           77 ELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEG  156 (591)
Q Consensus        77 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~  156 (591)
                      -|.-|+..+-+.++++.-+..                         ...-...++..-.||+..+.|+|+|+-+.-    
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L-------------------------~~~~~~~q~LFElAC~~qkydiV~WI~qnL----   99 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDL-------------------------ENERYLNQELFELACEEQKYDIVKWIGQNL----   99 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHh-------------------------hcchhHHHHHHHHHHHHccccHHHHHhhcc----
Confidence            466788888888877765421                         111234567888999999999999995421    


Q ss_pred             CccCCCCCChHHHHHHHhCcHHHHH----HHHhCCCCCcccCCCC--CCCHHHHHHHcCCHHHHHHHHhcCCCcceecCC
Q 007741          157 LTRKNRSGFDPLHIAAVQGHHAIVQ----VLLDHDPSLSQTTGPS--NATPLVSAATRGHTAVVNELLSKDGGLLEISRS  230 (591)
Q Consensus       157 ~~~~~~~g~t~Lh~A~~~g~~~iv~----~Ll~~~~~~~~~~~~~--g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~  230 (591)
                       ...+  -.+-+.+|...++.++..    .++++...- ...|..  -..-|..|+.+|-.+.+...|++++..      
T Consensus       100 -~i~~--~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~------  169 (192)
T PF03158_consen  100 -HIYN--PEDIFDIAFAKKDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNV------  169 (192)
T ss_pred             -CCCC--chhhhhhhhhccchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc------
Confidence             2222  236788899888877622    122221110 000000  002255666777777776666664432      


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHH
Q 007741          231 NGKNALHFAARQGHVDVVKALL  252 (591)
Q Consensus       231 ~g~tpLh~A~~~g~~~~v~~Ll  252 (591)
                       ..+.|..|+..++..++.+++
T Consensus       170 -~~~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  170 -DIIVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             -cHHHHHHHHHhhHHHHHHHhh
Confidence             115677777777777766665

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.55  E-value=0.96  Score=42.13  Aligned_cols=117  Identities=10%  Similarity=0.110  Sum_probs=83.1

Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCC----CCcccCCCCCCCHHHHHH
Q 007741          131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP----SLSQTTGPSNATPLVSAA  206 (591)
Q Consensus       131 TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~----~~~~~~~~~g~tpL~~A~  206 (591)
                      -.|--|+..-+.+-+.-++....         .-.+++.+|+.++..+++.+|+.+..    ++...  ..+..-+.++.
T Consensus       155 isledAV~AsN~~~i~~~VtdKk---------dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~L  223 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKK---------DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYLL  223 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchH---------HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHHH
Confidence            45677888888888777775211         13478999999999999999998632    22111  11333455555


Q ss_pred             Hc--CCHHHHHHHHhcCCCccee---cCCCCCcHHHHHHHcCCHHHHHHHHhcCccc
Q 007741          207 TR--GHTAVVNELLSKDGGLLEI---SRSNGKNALHFAARQGHVDVVKALLSKDPQL  258 (591)
Q Consensus       207 ~~--g~~~~v~~LL~~~~~~~~~---~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  258 (591)
                      ..  .+..+++++++++-..++.   .-+.|.|-|.-|.+.++.+++..|+++|+-.
T Consensus       224 S~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  224 SEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            43  4578899999886554442   3567999999999999999999999999853

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.79  E-value=1.4  Score=34.10  Aligned_cols=47  Identities=26%  Similarity=0.256  Sum_probs=32.0

Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhC
Q 007741          131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH  186 (591)
Q Consensus       131 TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  186 (591)
                      ..|..|+..|+.|+++.+++.+..         ....+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~---------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP---------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc---------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            456777777777777777764311         02467777777777777777775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.42  E-value=1.2  Score=34.46  Aligned_cols=46  Identities=26%  Similarity=0.424  Sum_probs=23.9

Q ss_pred             HHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcC
Q 007741          269 ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL  322 (591)
Q Consensus       269 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~  322 (591)
                      .+..|+..|+.|+++.+++.+..     +   ...+..|+..-+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            34555555555555555543321     1   2345555555555555555553

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=83.41  E-value=11  Score=38.13  Aligned_cols=232  Identities=10%  Similarity=0.084  Sum_probs=130.6

Q ss_pred             ccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHH
Q 007741           69 VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNEL  148 (591)
Q Consensus        69 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~L  148 (591)
                      ..|.+|.-.|..+...++.+....+++...+                   ....-..|..|.-.+......+..+-...+
T Consensus        16 ~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~-------------------~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i   76 (322)
T cd07920          16 AKDQHGSRFLQQKLEEATPEEKELIFDEILP-------------------HVVELMVDPFGNYVIQKLFEHGTEEQRLQL   76 (322)
T ss_pred             cCCchhhHHHHHHhccCCHHHHHHHHHHHHH-------------------hHHHHhcCccccHHHHHHHHhCCHHHHHHH
Confidence            4566777788888888888888877764210                   111234566788888888888877655555


Q ss_pred             HhcCCC-ccCccCCCCCChHHHHHHHhCcHHHHHHHHhC-CCC-CcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCC-Cc
Q 007741          149 LKYSTK-EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-DPS-LSQTTGPSNATPLVSAATRGHTAVVNELLSKDG-GL  224 (591)
Q Consensus       149 l~~~~~-~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~-~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~-~~  224 (591)
                      ++.-.+ ...-..+..|.-.+..+...+..+-...+++. .+. ..-..|..|...+..+...+..+..+.+++.-. ..
T Consensus        77 ~~~~~~~~~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~  156 (322)
T cd07920          77 LEKILGHVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNC  156 (322)
T ss_pred             HHHHHHHHHHHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            543211 11123555676666666666654433333332 111 112346677777777777766665555543311 01


Q ss_pred             c-eecCCCCCcHHHHHHHcCCHH----HHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcC--cccccCCC
Q 007741          225 L-EISRSNGKNALHFAARQGHVD----VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD--AAIVMLPD  297 (591)
Q Consensus       225 ~-~~~~~~g~tpLh~A~~~g~~~----~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~--~~~~~~~d  297 (591)
                      . -..+..|...+.........+    +++.|...-..+  ..|..|+..+..+.+.+..+..+.+++.-  .-..-..+
T Consensus       157 ~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L--~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~  234 (322)
T cd07920         157 VALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHALEL--VQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCH  234 (322)
T ss_pred             HHHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--hcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcC
Confidence            1 123556776666666655444    333333332222  34778888888888888765544444421  11123457


Q ss_pred             CCCCcHHHHHHHcCc----HHHHHHHhc
Q 007741          298 KFGNTALHVATRKKR----TEIVTELLS  321 (591)
Q Consensus       298 ~~g~T~Lh~A~~~g~----~~iv~~Ll~  321 (591)
                      +.|...+..+...+.    ..+++.++.
T Consensus       235 k~Gs~Vve~~l~~~~~~~~~~ii~~l~~  262 (322)
T cd07920         235 KFASNVVEKCLKHASKEERELIIDEILA  262 (322)
T ss_pred             cchHHHHHHHHHHCCHHHHHHHHHHHhc
Confidence            788888888877765    344454544

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.08  E-value=4.4  Score=31.25  Aligned_cols=49  Identities=16%  Similarity=0.146  Sum_probs=33.1

Q ss_pred             HHHHhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007741          460 IFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVG  521 (591)
Q Consensus       460 ~f~~~~~~a~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~~~~  521 (591)
                      +++++|.+||..|+....+-|+.++.+.             ..=+..+|.++|.+|+-+.+.
T Consensus        15 awi~f~waafg~s~~m~~~gi~~lPVD~-------------w~KGy~~MG~lfltgSt~tL~   63 (95)
T COG4298          15 AWIMFNWAAFGASYFMLGLGIWLLPVDL-------------WTKGYWAMGILFLTGSTVTLV   63 (95)
T ss_pred             hhHhHHHHHHHHHHHHHHHHhheechHH-------------HHHHHHHHHHHHHhcchhhhh
Confidence            5677889999999877666665554442             223556777788888766553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	591
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		8e-17
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-16
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-13
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-15
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-13
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-14
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-14
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-12
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		8e-13
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		6e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-11
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		8e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		8e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-10
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-04
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		9e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		5e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-08
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		7e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-10
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		8e-11
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		8e-05
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-10
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-08
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		9e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-10
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-09
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-05
1uoh_A	226	Human Gankyrin Length = 226		5e-10
1uoh_A	226	Human Gankyrin Length = 226		9e-08
1uoh_A	226	Human Gankyrin Length = 226		2e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-10
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-10
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		9e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		6e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		7e-10
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-08
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-09
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-09
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-09
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-09
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-09
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		3e-09
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-09
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-07
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-07
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-06
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-07
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-08
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		4e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-06
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		8e-08
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		8e-08
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		9e-08
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		6e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-07
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		4e-07
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		4e-07
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		6e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-06
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		3e-06
3so8_A	162	Crystal Structure Of Ankra Length = 162		4e-06
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		4e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		8e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		4e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		9e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		9e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		9e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		4e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-05
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		3e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		5e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		6e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		4e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		8e-05
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		2e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		3e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		3e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		3e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-04
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		4e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		5e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		6e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		7e-04
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		8e-04
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		9e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 129/286 (45%), Gaps = 30/286 (10%)
Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSG-------AEF-DTEVAEI---RSSVVNE 124
           T LH+AA+ G +  V  +L    SQ      G       A++    VAE+   R +  N 
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 174
Query: 125 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
             + G T L  A    ++++V  LL           N  G+ PLHIAA Q    + + LL
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN--GYTPLHIAAKQNQVEVARSLL 232
Query: 185 DHDPSLSQTTGPSNA------TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 238
                  Q  G +NA      TPL  AA  GH  +V  LLSK      +   +G   LH 
Sbjct: 233 -------QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHL 284
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
            A++GHV V   L+ K   +   T + G T LH+A    + ++VK LL+  A  V    K
Sbjct: 285 VAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTK 342
Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 344
            G + LH A ++  T+IVT LL     + N ++ D  T L IA+ L
Sbjct: 343 LGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRL 387

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 125 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
           ++ELG+  L  AA+ G+ + V +LL+       +  +  G  PLH AA  GH  IV++LL
Sbjct: 1   MSELGKR-LIEAAENGNKDRVKDLLENGADPNAS--DSDGRTPLHYAAENGHKEIVKLLL 57
Query: 185 DH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 242
               DP+   + G    TPL  AA  GH  +V  LLSK G       S+G+  LH+AA  
Sbjct: 58  SKGADPNAKDSDG---RTPLHYAAENGHKEIVKLLLSK-GADPNAKDSDGRTPLHYAAEN 113
Query: 243 GHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 285
           GH ++VK LLSK  DP     +D  G+T L +A +  + E+VKLL
Sbjct: 114 GHKEIVKLLLSKGADPNT---SDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 8/142 (5%)
Query: 202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLA 259
           L+ AA  G+   V +LL ++G     S S+G+  LH+AA  GH ++VK LLSK  DP   
Sbjct: 8   LIEAAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA- 65
Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 319
              D  G+T LH A +    E+VKLLL +  A     D  G T LH A      EIV  L
Sbjct: 66  --KDSDGRTPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 320 LSLPDTNVNALTRDHKTALDIA 341
           LS    + N    D +T LD+A
Sbjct: 123 LS-KGADPNTSDSDGRTPLDLA 143

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 69/121 (57%), Gaps = 3/121 (2%)
Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           TPL  AA  GH  VV +LL + G  +     NG+  LH AAR GH++VVK LL     + 
Sbjct: 4   TPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 319
            + DK G+T LH+A +    EVVKLLLEA  A V   DK G T LH+A R    E+V  L
Sbjct: 63  AK-DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 320 L 320
           L
Sbjct: 121 L 121

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 266 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 325
           G+T LH+A +    EVVKLLLEA  A V   DK G T LH+A R    E+V  LL     
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 326 NVNALTRDHKTALDIA 341
           +VNA  ++ +T L +A
Sbjct: 60  DVNAKDKNGRTPLHLA 75

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 125 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
           ++ELG+  L  AA+ G+ + V +LL+      +   +  G  PLH+AA  GH  +V++LL
Sbjct: 1   MSELGKR-LIEAAENGNKDRVKDLLENGAD--VNASDSDGKTPLHLAAENGHKEVVKLLL 57
Query: 185 DH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 242
               DP+   + G    TPL  AA  GH  VV  LLS+ G       S+GK  LH AA  
Sbjct: 58  SQGADPNAKDSDG---KTPLHLAAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAEN 113
Query: 243 GHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 285
           GH +VVK LLS+  DP     +D  G+T L +A +  + EVVKLL
Sbjct: 114 GHKEVVKLLLSQGADPN---TSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 8/142 (5%)
Query: 202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLA 259
           L+ AA  G+   V +LL ++G  +  S S+GK  LH AA  GH +VVK LLS+  DP  A
Sbjct: 8   LIEAAENGNKDRVKDLL-ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN-A 65
Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 319
           + +D  G+T LH+A +    EVVKLLL +  A     D  G T LH+A      E+V  L
Sbjct: 66  KDSD--GKTPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 320 LSLPDTNVNALTRDHKTALDIA 341
           LS    + N    D +T LD+A
Sbjct: 123 LSQ-GADPNTSDSDGRTPLDLA 143

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 6/161 (3%)
Query: 125 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
           ++ELG+  L  AA+ G+ + V +L++      +   +  G  PLH AA +GH  IV++L+
Sbjct: 1   MSELGKR-LIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHYAAKEGHKEIVKLLI 57
Query: 185 DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 244
                ++        TPL  AA  GH  +V  L+SK G  +    S+G+  LH+AA++GH
Sbjct: 58  SKGADVNAKD-SDGRTPLHYAAKEGHKEIVKLLISK-GADVNAKDSDGRTPLHYAAKEGH 115
Query: 245 VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 285
            ++VK L+SK   +   +D  G+T L +A +  + E+VKLL
Sbjct: 116 KEIVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 261
           L+ AA  G+   V +L+ ++G  +  S S+G+  LH+AA++GH ++VK L+SK   +  +
Sbjct: 8   LIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 262 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 321
            D  G+T LH A K    E+VKLL+ +  A V   D  G T LH A ++   EIV  L+S
Sbjct: 67  -DSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 322 LPDTNVNALTRDHKTALDIA 341
               +VN    D +T LD+A
Sbjct: 125 -KGADVNTSDSDGRTPLDLA 143

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 125 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
           ++ELG+  L  AA+ G+ + V +L++      +   +  G  PLH AA  GH  +V++L+
Sbjct: 1   MSELGKR-LIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLI 57
Query: 185 DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 244
                ++        TPL  AA  GH  VV  L+SK G  +    S+G+  LH AA  GH
Sbjct: 58  SKGADVNAKD-SDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGH 115
Query: 245 VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 285
            +VVK L+SK   +   +D  G+T L +A +  + EVVKLL
Sbjct: 116 KEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 261
           L+ AA  G+   V +L+ ++G  +  S S+G+  LH AA  GH +VVK L+SK   +  +
Sbjct: 8   LIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 262 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 321
            D  G+T LH A +    EVVKLL+ +  A V   D  G T LH A      E+V  L+S
Sbjct: 67  -DSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS 124
Query: 322 LPDTNVNALTRDHKTALDIA 341
               +VN    D +T LD+A
Sbjct: 125 -KGADVNTSDSDGRTPLDLA 143

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 11/190 (5%)
Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 179
           ++  +E   T L  AA+  H+E V    KY  K G  +  K+  G   LH+AA +GH+ +
Sbjct: 37  IDTCSEDQRTPLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV 92
Query: 180 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN-ALHF 238
           VQ LL +             TP++ A    H  +V  LLSK G  + I R N +N  LH+
Sbjct: 93  VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINI-RDNEENICLHW 150
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AA  G VD+ + LL+    L    +  G + LH+A +    + V L L  D+  V L +K
Sbjct: 151 AAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNK 208
Query: 299 FGNTALHVAT 308
            G T L  A+
Sbjct: 209 EGETPLQCAS 218

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 90/207 (43%), Gaps = 35/207 (16%)
Query: 167 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 226
           PLH AA  GH  I  +L+    ++  T      TPL+ AA   H   V  L+ K G L++
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLI-KAGALVD 71
Query: 227 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 286
              + G   LH AA++GH +VV+ LLS         D  G T +  A + +  ++VKLLL
Sbjct: 72  PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 287 E------------------------ADAAIVMLPDK--------FGNTALHVATRKKRTE 314
                                     D A ++L  K         G++ LH+A R+ R +
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191
Query: 315 IVTELLSLPDTNVNALTRDHKTALDIA 341
            V   LS  D++V    ++ +T L  A
Sbjct: 192 CVVLFLS-RDSDVTLKNKEGETPLQCA 217

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 231 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 290
           NG+  LH AAR GH++VVK LL     +  + DK G+T LH+A +    EVVKLLLEA  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA-G 58
Query: 291 AIVMLPDKFGNTALHVATRKKRTEIVTELL 320
           A V   DK G T LH+A R    E+V  LL
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           VN  ++ G T L  AA +GH+E+V  LLK      +  K++ G+ PLH+AA +GH  IV+
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--VNAKDKDGYTPLHLAAREGHLEIVE 85
Query: 182 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
           VLL     ++        TPL  AA  GH  +V E+L K G  +      GK     A R
Sbjct: 86  VLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTPFDLAIR 143
Query: 242 QGHVDVVKAL 251
           +GH D+ + L
Sbjct: 144 EGHEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           TPL  AA  GH  +V E+L K G  +     +G   LH AAR+GH+++V+ LL     + 
Sbjct: 37  TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 315
            + DK G T LH+A +    E+V++LL+A  A V   DKFG T   +A R+   +I
Sbjct: 96  AK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIREGHEDI 149

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AAR G  D V+ L++    +  + DK G T LH+A +    E+V++LL+A  A V   DK
Sbjct: 9   AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDK 66
Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 358
            G T LH+A R+   EIV E+L     +VNA  +D  T L +A    + E   EI + L 
Sbjct: 67  DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLA----AREGHLEIVEVLL 121
Query: 359 RCGA 362
           + GA
Sbjct: 122 KAGA 125

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 160 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 219
           K++ G+ PLH+AA +GH  IV+VLL     ++        TPL  AA  GH  +V E+L 
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIV-EVLL 88
Query: 220 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 279
           K G  +     +G   LH AAR+GH+++V+ LL     +    DK G+T   +A+   + 
Sbjct: 89  KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIDNGNE 147
Query: 280 EVVKLLLEA 288
           ++ ++L +A
Sbjct: 148 DIAEVLQKA 156

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           TPL  AA  GH  +V E+L K G  +     +G   LH AAR+GH+++V+ LL     + 
Sbjct: 37  TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 315
            + DK G T LH+A +    E+V++LL+A  A V   DKFG T   +A      +I
Sbjct: 96  AK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIDNGNEDI 149

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AAR G  D V+ L++    +  + DK G T LH+A +    E+V++LL+A  A V   DK
Sbjct: 9   AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDK 66
Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 358
            G T LH+A R+   EIV E+L     +VNA  +D  T L +A    + E   EI + L 
Sbjct: 67  DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLA----AREGHLEIVEVLL 121
Query: 359 RCGA 362
           + GA
Sbjct: 122 KAGA 125

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 7/128 (5%)
Query: 160 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 217
           ++ +G+ PLH+AA  GH  IV+VLL +  D +   + G    TPL  AA RGH  +V E+
Sbjct: 43  RDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG---VTPLHLAARRGHLEIV-EV 98
Query: 218 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 277
           L K+G  +  S S+G   LH AA++GH+++V+ LL K+       DK G+TA  +++   
Sbjct: 99  LLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNG 157
Query: 278 SCEVVKLL 285
           + ++ ++L
Sbjct: 158 NEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           TPL  AA  GH  +V E+L K+G  +    S G   LH AAR+GH+++V+ LL K+    
Sbjct: 49  TPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL-KNGADV 106
Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 307
             +D  G T LH+A K    E+V++LL+ + A V   DKFG TA  ++
Sbjct: 107 NASDSHGFTPLHLAAKRGHLEIVEVLLK-NGADVNAQDKFGKTAFDIS 153

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AAR G  D V+ L++    +  R D  G T LH+A      E+V++LL+ + A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDS 78
Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 358
            G T LH+A R+   EIV  LL     +VNA      T L +A    +     EI + L 
Sbjct: 79  LGVTPLHLAARRGHLEIVEVLLK-NGADVNASDSHGFTPLHLA----AKRGHLEIVEVLL 133
Query: 359 RCGAVRANELNQPRDELRKTVTQIKKD 385
           + GA    ++N  +D+  KT   I  D
Sbjct: 134 KNGA----DVN-AQDKFGKTAFDISID 155

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 160 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 219
           K++ G+ PLH+AA +GH  IV+VLL     ++        TPL  AA  GH  +V E+L 
Sbjct: 43  KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIV-EVLL 100
Query: 220 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 279
           K G  +     +G   LH AAR+GH+++V+ LL     +    DK G+TA  +++   + 
Sbjct: 101 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTAFDISIDNGNE 159
Query: 280 EVVKLL 285
           ++ ++L
Sbjct: 160 DLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 77/147 (52%), Gaps = 12/147 (8%)
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AAR G  D V+ L++    +  + DK G T LH+A +    E+V++LL+A  A V   DK
Sbjct: 21  AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDK 78
Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 358
            G T LH+A R+   EIV E+L     +VNA  +D  T L +A    + E   EI + L 
Sbjct: 79  DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLA----AREGHLEIVEVLL 133
Query: 359 RCGAVRANELNQPRDELRKTVTQIKKD 385
           + GA    ++N  +D+  KT   I  D
Sbjct: 134 KAGA----DVN-AQDKFGKTAFDISID 155

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 160 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 219
           ++ SG  PLH+AA++GH  IV+VLL H   ++      + TPL  AA  GH  +V E+L 
Sbjct: 43  EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD-TPLHLAALYGHLEIV-EVLL 100
Query: 220 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 279
           K+G  +  + + G   LH AA  GH+++V+ LL     +    DK G+TA  +++   + 
Sbjct: 101 KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNE 159
Query: 280 EVVKLL 285
           ++ ++L
Sbjct: 160 DLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 261
           L+ AA  G    V  +L  +G  +     +GK  LH AA +GH+++V+ LL     +   
Sbjct: 18  LLEAARAGQDDEV-RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NA 75
Query: 262 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 321
            DK G T LH+A      E+V++LL+ + A V   D +G T LH+A      EIV  LL 
Sbjct: 76  ADKMGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 322 LPDTNVNALTRDHKTALDIA 341
               +VNA  +  KTA DI+
Sbjct: 135 YG-ADVNAQDKFGKTAFDIS 153

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 161 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 218
           +  G+ PLH+AA  GH  IV+VLL +  D + S  TG    TPL  AA  GH  +V E+L
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG---ITPLHLAAATGHLEIV-EVL 99
Query: 219 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 278
            K G  +    ++G   LH AA+ GH+++V+ LL     +  + DK G+TA  +++   +
Sbjct: 100 LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGN 158
Query: 279 CEVVKLL 285
            ++ ++L
Sbjct: 159 EDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           TPL  AA+ GH  +V E+L K+G  +  S   G   LH AA  GH+++V+ LL     + 
Sbjct: 49  TPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV- 106
Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 315
              D  G T LH+A K    E+V++LL+   A V   DKFG TA  ++      ++
Sbjct: 107 NAYDNDGHTPLHLAAKYGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AAR G  D V+ L++    +   TD  G T LH+A      E+V++LL+ + A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDL 78
Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 358
            G T LH+A      EIV E+L     +VNA   D  T L +A    +     EI + L 
Sbjct: 79  TGITPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGHTPLHLA----AKYGHLEIVEVLL 133
Query: 359 RCGAVRANELNQPRDELRKTVTQIKKD 385
           + GA    ++N  +D+  KT   I  D
Sbjct: 134 KHGA----DVN-AQDKFGKTAFDISID 155

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 81/187 (43%), Gaps = 38/187 (20%)
Query: 156 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVN 215
           G+   ++ G  PLH+AA+ G   ++ +LL H        G  NA   V            
Sbjct: 78  GVNVTSQDGSSPLHVAALHGRADLIPLLLKH----GANAGARNADQAVP----------- 122
Query: 216 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 275
                               LH A +QGH  VVK LL  + +   + D  G T L  A  
Sbjct: 123 --------------------LHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACS 161
Query: 276 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 335
           G   E+V LLL+  A+I    +K GNTALH A  +K    V ELL L   +V  L +  +
Sbjct: 162 GGHHELVALLLQHGASINASNNK-GNTALHEAVIEKHV-FVVELLLLHGASVQVLNKRQR 219
Query: 336 TALDIAE 342
           TA+D AE
Sbjct: 220 TAVDCAE 226

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 164 GFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 221
           G+ PLH+AA  GH  IV+VLL +  D +   T G   +TPL  AA  GH  +V E+L K+
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG---STPLHLAAHFGHLEIV-EVLLKN 102
Query: 222 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 281
           G  +     NG   LH AA +GH+++V+ LL     +    DK G+TA  +++   + ++
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV-NAQDKFGKTAFDISINNGNEDL 161
Query: 282 VKLL 285
            ++L
Sbjct: 162 AEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 232 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 291
           G   LH AA  GH+++V+ LL K+       D  G T LH+A      E+V++LL+ + A
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLL-KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGA 104
Query: 292 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
            V   D  G T LH+A  +   EIV  LL     +VNA  +  KTA DI+
Sbjct: 105 DVNAKDDNGITPLHLAANRGHLEIVEVLLKYG-ADVNAQDKFGKTAFDIS 153

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 6/177 (3%)
Query: 168 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 227
           LH AA+     +V+  +     + Q  G  N+TPL  A  +GH ++V +L+ K G    +
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSL 104
Query: 228 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV-KGQSCEVVKLLL 286
               G + +H AA+ GH  +V  L++K  Q     D+ G T L  A  +  S +  +LLL
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163
Query: 287 EADAAIVMLPDKF-GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 342
             + + V L DK+  NTALH A     T +++ LL     NV+A     ++ALD+A+
Sbjct: 164 TFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAK 218

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 161 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 218
           + +G  PLH+AA  GH  IV+VLL H  D   S   G    TPL  AA  GH  +V E+L
Sbjct: 44  DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG---YTPLHLAAYWGHLEIV-EVL 99
Query: 219 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 278
            K+G  +    S+G   LH AA+ G++++V+ LL     +    DK G+TA  +++   +
Sbjct: 100 LKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGN 158
Query: 279 CEVVKLL 285
            ++ ++L
Sbjct: 159 EDLAEIL 165

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 197 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP 256
           +  TPL  AA  GH  +V E+L K G  ++ S   G   LH AA  GH+++V+ LL K+ 
Sbjct: 46  TGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLL-KNG 103
Query: 257 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 315
                 D  G T LH+A K    E+V++LL+   A V   DKFG TA  ++      ++
Sbjct: 104 ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 164 GFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 221
           G+ PLH+AA  GH  IV+VLL +  D +   + G    TPL  AA RGH  VV E+L K+
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG---VTPLHLAADRGHLEVV-EVLLKN 102
Query: 222 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 281
           G  +  +  NG   LH AA  GH+++V+ LL     +    DK G+TA  +++   + ++
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDL 161
Query: 282 VKLL 285
            ++L
Sbjct: 162 AEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 261
           L+ AA  G    V  +L  +G  +  S   G   LH AA  GH+++V+ LL K+      
Sbjct: 18  LLEAARAGQDDEV-RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL-KNGADVNA 75
Query: 262 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 321
            D  G T LH+A      EVV++LL+ + A V   D  G T LH+A      EIV  LL 
Sbjct: 76  DDSLGVTPLHLAADRGHLEVVEVLLK-NGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 322 LPDTNVNALTRDHKTALDIA 341
               +VNA  +  KTA DI+
Sbjct: 135 -HGADVNAQDKFGKTAFDIS 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           VN V+  G T L  AA  GH+E+V  LLK+     +   +  GF PLH+AA+ GH  IV+
Sbjct: 40  VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD--VDAADVYGFTPLHLAAMTGHLEIVE 97
Query: 182 VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 239
           VLL +  D +    TG   +TPL  AA  GH  +V E+L K G  +      GK A   +
Sbjct: 98  VLLKYGADVNAFDMTG---STPLHLAADEGHLEIV-EVLLKYGADVNAQDKFGKTAFDIS 153
Query: 240 ARQGHVDVVKA 250
              G+ D+ K+
Sbjct: 154 IDNGNEDLAKS 164

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 161 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 218
           + +G  PLH+AAV GH  IV+VLL H  D   +   G    TPL  AA  GH  +V E+L
Sbjct: 44  DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG---FTPLHLAAMTGHLEIV-EVL 99
Query: 219 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 278
            K G  +      G   LH AA +GH+++V+ LL     +  + DK G+TA  +++   +
Sbjct: 100 LKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGN 158
Query: 279 CEVVK 283
            ++ K
Sbjct: 159 EDLAK 163

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AAR G  D V+ L++    +    D  G T LH+A      E+V++LL+   A V   D 
Sbjct: 21  AARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLK-HGADVDAADV 78
Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 358
           +G T LH+A      EIV  LL     +VNA      T L +A    + E   EI + L 
Sbjct: 79  YGFTPLHLAAMTGHLEIVEVLLKYG-ADVNAFDMTGSTPLHLA----ADEGHLEIVEVLL 133
Query: 359 RCGAVRANELNQPRDELRKTVTQIKKD 385
           + GA    ++N  +D+  KT   I  D
Sbjct: 134 KYGA----DVN-AQDKFGKTAFDISID 155

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           VN  +  G T L    + GH+E++  LLKY+    +   ++SG+ PLH+AA +GH  IV+
Sbjct: 40  VNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD--VNASDKSGWTPLHLAAYRGHLEIVE 97
Query: 182 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
           VLL +   ++        TPL  AA  GH  +V E+L K G  +      GK A   +  
Sbjct: 98  VLLKYGADVNAMD-YQGYTPLHLAAEDGHLEIV-EVLLKYGADVNAQDKFGKTAFDISID 155
Query: 242 QGHVDVVKAL 251
            G+ D+ + L
Sbjct: 156 NGNEDLAEIL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           TPL      GH  ++ E+L K    +  S  +G   LH AA +GH+++V+ LL     + 
Sbjct: 49  TPLHLVVNNGHLEII-EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV- 106
Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 319
              D +G T LH+A +    E+V++LL+   A V   DKFG TA  ++      ++   L
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 320 LSL 322
             L
Sbjct: 166 QKL 168

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AAR G  D V+ L++    +    D  G T LH+ V     E++++LL+  AA V   DK
Sbjct: 21  AARAGQDDEVRILMANGADV-NANDWFGITPLHLVVNNGHLEIIEVLLKY-AADVNASDK 78
Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 358
            G T LH+A  +   EIV  LL     +VNA+     T L +A    + +   EI + L 
Sbjct: 79  SGWTPLHLAAYRGHLEIVEVLLKYG-ADVNAMDYQGYTPLHLA----AEDGHLEIVEVLL 133
Query: 359 RCGAVRANELNQPRDELRKTVTQIKKD 385
           + GA    ++N  +D+  KT   I  D
Sbjct: 134 KYGA----DVN-AQDKFGKTAFDISID 155

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 160 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 219
           ++ SG+ PLH+AA  GH  IV+VLL +   ++     +  TPL  AA  GH  +V E+L 
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEIV-EVLL 100
Query: 220 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 279
           K+G  +  +   G   LH AA  GH+++V+ LL K+       DK G+TA  +++   + 
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 280 EVVKLL 285
           ++ ++L
Sbjct: 160 DLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 197 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP 256
           S  TPL  AA  GH  +V E+L K+G  +      G   L  AA  GH+++V+ LL K+ 
Sbjct: 46  SGWTPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KNG 103
Query: 257 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 315
                 D +G T LH+A      E+V++LL+ + A V   DKFG TA  ++      ++
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           VN  + LG T L  AA  GH+E+V  LLKY     +   +  G  PLH+AA  GH  IV+
Sbjct: 40  VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD--VNAWDNYGATPLHLAADNGHLEIVE 97
Query: 182 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
           VLL H   ++        TPL  AA  GH  +V E+L K G  +      GK A   +  
Sbjct: 98  VLLKHGADVNAKD-YEGFTPLHLAAYDGHLEIV-EVLLKYGADVNAQDKFGKTAFDISID 155
Query: 242 QGHVDVVKAL 251
            G+ D+ + L
Sbjct: 156 NGNEDLAEIL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 164 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 223
           G  PLH+AA  GH  IV+VLL +   ++       ATPL  AA  GH  +V E+L K G 
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN-YGATPLHLAADNGHLEIV-EVLLKHGA 104
Query: 224 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 283
            +      G   LH AA  GH+++V+ LL     +    DK G+TA  +++   + ++ +
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAE 163
Query: 284 LL 285
           +L
Sbjct: 164 IL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AAR G  D V+ L++    +   TD  G T LH+A K    E+V++LL+   A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLLKY-GADVNAWDN 78
Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 358
           +G T LH+A      EIV  LL     +VNA   +  T L +A    + +   EI + L 
Sbjct: 79  YGATPLHLAADNGHLEIVEVLLK-HGADVNAKDYEGFTPLHLA----AYDGHLEIVEVLL 133
Query: 359 RCGAVRANELNQPRDELRKTVTQIKKD 385
           + GA    ++N  +D+  KT   I  D
Sbjct: 134 KYGA----DVN-AQDKFGKTAFDISID 155

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 17/218 (7%)
Query: 97  IDSQMVGNLSGAEFDTEVAEIRSSVVNE------VNELGETALFTAADKGHIEVVNELLK 150
           + + MV NL+   +  ++ E++ S++ +       ++   TAL  A   GH E+V  LL+
Sbjct: 5   VSNLMVCNLA---YSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
Query: 151 YSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH 210
                 +  K+ +G+ PLHIAA  G   IV+ LL     ++     +  TPL  AA++  
Sbjct: 62  LGVP--VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNR 118
Query: 211 TAVVNELLSKDGGLLEISRSNGK-NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA 269
             +   LL  +GG    ++ + +  A+H AA +G++ ++  LL          D +G T 
Sbjct: 119 HEIAVMLL--EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTP 175
Query: 270 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 307
           LH+A   +  E  KLL+   A+I  + +K   T L VA
Sbjct: 176 LHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 5/186 (2%)
Query: 158 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 217
           TR ++     LH A   GH  IV+ LL     ++     +  +PL  AA+ G   +V  L
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKAL 92
Query: 218 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 277
           L K G  +     NG   LH+AA +   ++   LL        + D    TA+H A    
Sbjct: 93  LGK-GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKG 150
Query: 278 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 337
           + +++ +LL   A+   + D  GNT LH+A  ++R E    L+S    ++    ++ KT 
Sbjct: 151 NLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTP 208
Query: 338 LDIAEG 343
           L +A+G
Sbjct: 209 LQVAKG 214

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 240 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 299
           A  G ++ +K  +  D  LA RTD+  +TALH A      E+V+ LL+     V   D  
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDA 72
Query: 300 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           G + LH+A    R EIV  LL      VNA+ ++  T L  A
Sbjct: 73  GWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYA 113

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 231 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 290
           +G   LH AA+ GH + VK LLSK   +  R+ K G T LH+A K    E+VKLLL A  
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLL-AKG 65
Query: 291 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 329
           A V    K GNT  H+A +    EIV +LL     +VNA
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIV-KLLDAKGADVNA 103

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 17/218 (7%)
Query: 97  IDSQMVGNLSGAEFDTEVAEIRSSVVNE------VNELGETALFTAADKGHIEVVNELLK 150
           + + MV NL+   +  ++ E++ S++ +       ++   TAL  A   GH E+V  LL+
Sbjct: 6   VSNLMVCNLA---YSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 62
Query: 151 YSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH 210
                 +  K+ +G+ PLHIAA  G   IV+ LL     ++     +  TPL  AA++  
Sbjct: 63  LGVP--VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNR 119
Query: 211 TAVVNELLSKDGGLLEISRSNGK-NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA 269
             +   LL  +GG    ++ + +  A+H AA +G++ ++  LL          D +G T 
Sbjct: 120 HEIAVMLL--EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTP 176
Query: 270 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 307
           LH+A   +  E  KLL+   A+I  + +K   T L VA
Sbjct: 177 LHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 5/186 (2%)
Query: 158 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 217
           TR ++     LH A   GH  IV+ LL     ++     +  +PL  AA+ G   +V  L
Sbjct: 35  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKAL 93
Query: 218 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 277
           L K G  +     NG   LH+AA +   ++   LL        + D    TA+H A    
Sbjct: 94  LGK-GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKG 151
Query: 278 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 337
           + +++ +LL   A+   + D  GNT LH+A  ++R E    L+S    ++    ++ KT 
Sbjct: 152 NLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTP 209
Query: 338 LDIAEG 343
           L +A+G
Sbjct: 210 LQVAKG 215

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 240 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 299
           A  G ++ +K  +  D  LA RTD+  +TALH A      E+V+ LL+     V   D  
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDA 73
Query: 300 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           G + LH+A    R EIV  LL      VNA+ ++  T L  A
Sbjct: 74  GWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYA 114

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 161 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 220
           + SG  PLH+AA  GH  IV+VLL H   ++       +TPL  AA  GH  +V E+L K
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IXGSTPLHLAALIGHLEIV-EVLLK 101
Query: 221 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 280
            G  +    + G   LH AA  GH+++V+ LL     +  + DK G+TA  +++   + +
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNED 160
Query: 281 VVKLL 285
           + ++L
Sbjct: 161 LAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 192 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 251
             T  S  TPL  AAT GH  +V E+L K G  +      G   LH AA  GH+++V+ L
Sbjct: 41  NATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Query: 252 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 311
           L     +    D  G T LH+A      E+V++LL+   A V   DKFG TA  ++    
Sbjct: 100 LKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNG 157
Query: 312 RTEI 315
             ++
Sbjct: 158 NEDL 161

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 161 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 220
           + SG  PLH+AA  GH  IV+VLL H   ++       +TPL  AA  GH  +V E+L K
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IMGSTPLHLAALIGHLEIV-EVLLK 101
Query: 221 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 280
            G  +    + G   LH AA  GH+++V+ LL     +  + DK G+TA  +++   + +
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNED 160
Query: 281 VVKLL 285
           + ++L
Sbjct: 161 LAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 192 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 251
             T  S  TPL  AAT GH  +V E+L K G  +      G   LH AA  GH+++V+ L
Sbjct: 41  NATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 252 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 311
           L     +    D  G T LH+A      E+V++LL+   A V   DKFG TA  ++    
Sbjct: 100 LKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNG 157
Query: 312 RTEI 315
             ++
Sbjct: 158 NEDL 161

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 261
           L+ AA  G    V  +L  +G  +    + G   LH AAR GH+++V+ LL K+      
Sbjct: 18  LLEAARAGQDDEV-RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL-KNGADVNA 75
Query: 262 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 321
            D  G T LH+A K    E+V++LL+   A V   D  G+T LH+A      EIV  LL 
Sbjct: 76  LDFSGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 322 LPDTNVNALTRDHKTALDIA 341
               +VNA  +  KTA DI+
Sbjct: 135 YG-ADVNAQDKFGKTAFDIS 153

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           VN  ++ G T L  AA  GH E+V  LLK+     +  ++  G+ PLH+AA  GH  IV+
Sbjct: 40  VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD--VNARDTDGWTPLHLAADNGHLEIVE 97
Query: 182 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
           VLL +   ++        TPL  AA RGH  +V E+L K G  +      GK A   +  
Sbjct: 98  VLLKYGADVNAQDA-YGLTPLHLAADRGHLEIV-EVLLKHGADVNAQDKFGKTAFDISID 155
Query: 242 QGHVDVVKAL 251
            G+ D+ + L
Sbjct: 156 NGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 7/127 (5%)
Query: 161 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 218
           +  G  PLH+AA  GH  IV+VLL H  D +   T G    TPL  AA  GH  +V E+L
Sbjct: 44  DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG---WTPLHLAADNGHLEIV-EVL 99
Query: 219 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 278
            K G  +    + G   LH AA +GH+++V+ LL     +    DK G+TA  +++   +
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGN 158
Query: 279 CEVVKLL 285
            ++ ++L
Sbjct: 159 EDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 261
           L+ AA  G    V  +L  +G  +      G   LH AA  GH ++V+ LL     +  R
Sbjct: 18  LLEAARAGQDDEV-RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 262 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 321
            D  G T LH+A      E+V++LL+   A V   D +G T LH+A  +   EIV E+L 
Sbjct: 77  -DTDGWTPLHLAADNGHLEIVEVLLKY-GADVNAQDAYGLTPLHLAADRGHLEIV-EVLL 133
Query: 322 LPDTNVNALTRDHKTALDIA 341
               +VNA  +  KTA DI+
Sbjct: 134 KHGADVNAQDKFGKTAFDIS 153

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 167 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 224
           PLH A ++     VQ LL   PSL          PL  + +     + + LLSK  +  L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 225 LEISRSNGKNALHFAARQGHVDVVKALLSKD--PQLARRTDKKGQTALHMAVKGQSCEVV 282
            +    +G    H A   G+++VVK+L  +   P L + T+ +G T LH+AV  +  EV 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 283 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 340
           + L+E + A V + DKF    LH A      +++  L  L  + VN   +   T L   +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 341 AEG 343
           AEG
Sbjct: 183 AEG 185

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 167 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 224
           PLH A ++     VQ LL   PSL          PL  + +     + + LLSK  +  L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 225 LEISRSNGKNALHFAARQGHVDVVKALLSKD--PQLARRTDKKGQTALHMAVKGQSCEVV 282
            +    +G    H A   G+++VVK+L  +   P L + T+ +G T LH+AV  +  EV 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 283 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 340
           + L+E + A V + DKF    LH A      +++  L  L  + VN   +   T L   +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 341 AEG 343
           AEG
Sbjct: 183 AEG 185

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 167 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 224
           PLH A ++     VQ LL   PSL          PL  + +     + + LLSK  +  L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 225 LEISRSNGKNALHFAARQGHVDVVKALLSKD--PQLARRTDKKGQTALHMAVKGQSCEVV 282
            +    +G    H A   G+++VVK+L  +   P L + T+ +G T LH+AV  +  EV 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 283 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 340
           + L+E + A V + DKF    LH A      +++  L  L  + VN   +   T L   +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 341 AEG 343
           AEG
Sbjct: 183 AEG 185

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 185
           N  GET L  A+ KG I  V  LL+  +   +  K+ +G+ PLH A   GH  +V++LL 
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNV--KDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 186 HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 219
           H  +L  TTG  N +PL  AA  GH  +V  LLS
Sbjct: 65  HK-ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 161 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 218
           N  G   LHIA+++G    V+ LL +  DP++    G    TPL  A   GH  VV ELL
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAG---WTPLHEACNHGHLKVV-ELL 62
Query: 219 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 253
            +   L+  +     + LH AA+ GHVD+VK LLS
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 14/192 (7%)
Query: 120 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 179
           S+    ++   TAL  A   GH E+V  LL+      +  K+ +G+ PLHIAA  G   I
Sbjct: 31  SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGRDEI 88
Query: 180 VQVLL---DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-GKNA 235
           V+ LL    H  +++Q    +  TPL  AA++    +   LL  +GG    ++ +    A
Sbjct: 89  VKALLVKGAHVNAVNQ----NGCTPLHYAASKNRHEIAVMLL--EGGANPDAKDHYDATA 142
Query: 236 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 295
           +H AA +G++ +V  LL          D +G T LH+A   +  E  K L+   A+I  +
Sbjct: 143 MHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YI 200
Query: 296 PDKFGNTALHVA 307
            +K   T L VA
Sbjct: 201 ENKEEKTPLQVA 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 25/208 (12%)
Query: 158 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 217
           TR ++     LH A   GH  IV+ LL     ++     +  +PL  AA+ G   +V  L
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKAL 92
Query: 218 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS--KDPQLARRTDKKGQTALHMAVK 275
           L K G  +     NG   LH+AA +   ++   LL    +P      D    TA+H A  
Sbjct: 93  LVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TAMHRAAA 148
Query: 276 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE----IVTELLSLPDTNVNALT 331
             + ++V +LL   A+   + D  GNT LH+A  ++R E    +VT+  S+   N     
Sbjct: 149 KGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN----- 202
Query: 332 RDHKTALDIAEG--------LPSSEEAS 351
           ++ KT L +A+G        L   EEAS
Sbjct: 203 KEEKTPLQVAKGGLGLILKRLAEGEEAS 230

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 240 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 299
           A  G +D +K  +  D  LA RTD+  +TALH A      E+V+ LL+     V   D  
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 72
Query: 300 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           G + LH+A    R EIV  LL +   +VNA+ ++  T L  A
Sbjct: 73  GWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYA 113

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 8/189 (4%)
Query: 132 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS 191
           AL  AA++   + V E+L+ +T + +   +  G  PL+IA       I + L+D    ++
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 192 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 251
                S+ +P + A  +G T ++  +L      L      G NAL  AA +GH+D VK L
Sbjct: 67  LQNSISD-SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125
Query: 252 LSKDPQLARRTDKKGQTALHMAV---KGQSC--EVVKLLLEADAAIVMLPDKFGNTALHV 306
           L    +     +  G TAL  AV   +G     ++VKLL+E + A   + D  G TA+  
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDY 184
Query: 307 ATRKKRTEI 315
           A +K  TEI
Sbjct: 185 ANQKGYTEI 193

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 14/192 (7%)
Query: 120 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 179
           S+    ++   TAL  A   GH E+V  LL+      +  K+ +G+ PLHIAA  G   I
Sbjct: 31  SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGXDEI 88
Query: 180 VQVLL---DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-GKNA 235
           V+ LL    H  +++Q    +  TPL  AA++    +   LL  +GG    ++ +    A
Sbjct: 89  VKALLVKGAHVNAVNQ----NGCTPLHYAASKNRHEIAVMLL--EGGANPDAKDHYDATA 142
Query: 236 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 295
           +H AA +G++ +V  LL          D +G T LH+A   +  E  K L+   A+I  +
Sbjct: 143 MHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YI 200
Query: 296 PDKFGNTALHVA 307
            +K   T L VA
Sbjct: 201 ENKEEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 25/208 (12%)
Query: 158 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 217
           TR ++     LH A   GH  IV+ LL     ++     +  +PL  AA+ G   +V  L
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGXDEIVKAL 92
Query: 218 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS--KDPQLARRTDKKGQTALHMAVK 275
           L K G  +     NG   LH+AA +   ++   LL    +P      D    TA+H A  
Sbjct: 93  LVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TAMHRAAA 148
Query: 276 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE----IVTELLSLPDTNVNALT 331
             + ++V +LL   A+   + D  GNT LH+A  ++R E    +VT+  S+   N     
Sbjct: 149 KGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN----- 202
Query: 332 RDHKTALDIAEG--------LPSSEEAS 351
           ++ KT L +A+G        L   EEAS
Sbjct: 203 KEEKTPLQVAKGGLGLILKRLAEGEEAS 230

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 240 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 299
           A  G +D +K  +  D  LA RTD+  +TALH A      E+V+ LL+     V   D  
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDA 72
Query: 300 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           G + LH+A      EIV  LL +   +VNA+ ++  T L  A
Sbjct: 73  GWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYA 113

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 91/212 (42%), Gaps = 32/212 (15%)
Query: 110 FDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLH 169
           F    A +   VVN  +  G TAL  +    +  VV +LL     + + ++NR+G+ P+ 
Sbjct: 92  FRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK-VDKQNRAGYSPIM 150
Query: 170 IAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR 229
           +                             T L +  T+     V +L  + G +   + 
Sbjct: 151 L-----------------------------TALATLKTQDDIETVLQLF-RLGNINAKAS 180
Query: 230 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 289
             G+ AL  A   G VDVVKALL+ +  +  + D  G TAL  A +    E+  LLL   
Sbjct: 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIAGLLLAVP 239
Query: 290 AAIVMLPDKFGNTALHVATRKKRTEIVTELLS 321
           +  + L D+ G+TAL VA    ++EI + L S
Sbjct: 240 SCDISLTDRDGSTALMVALDAGQSEIASMLYS 271

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 183 LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN--GKNALHFAA 240
           LLD+  +++ + G    T L  + +  +  VV +LL  D G+ ++ + N  G + +   A
Sbjct: 99  LLDYVVNIADSNGN---TALHYSVSHANFPVVQQLL--DSGVCKVDKQNRAGYSPIMLTA 153
Query: 241 -----RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 295
                 Q  ++ V  L  +   +  +  + GQTAL +AV     +VVK LL  +A  V +
Sbjct: 154 LATLKTQDDIETVLQLF-RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNV 211
Query: 296 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEAS 351
            D  G+TAL  A      EI   LL++P  +++   RD  TAL +A     SE AS
Sbjct: 212 QDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIAS 267

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           TPL  AA  GH  +V E+L ++G  +    +NG   LH AA  GH+++V+ LL     + 
Sbjct: 37  TPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 307
            + D  G T L++A      E+V++LL+   A V   DKFG TA  ++
Sbjct: 96  AK-DATGITPLYLAAYWGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 141

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 232 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 291
           G+  LH AA  GH+++V+ LL     +    D  G T LH+A      E+V++LL+   A
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKY-GA 92
Query: 292 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEAS 351
            V   D  G T L++A      EIV E+L     +VNA  +  KTA DI+  +  +E+ +
Sbjct: 93  DVNAKDATGITPLYLAAYWGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDI-GNEDLA 150
Query: 352 EI 353
           EI
Sbjct: 151 EI 152

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 14/177 (7%)
Query: 126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 185
           N+LG+TAL  AA  G    V +L  Y+   G+    R G   LH+A     H    VLL 
Sbjct: 42  NDLGQTALHLAAILGEASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 186 HDPS---------LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL---LEISRSNGK 233
             PS         L+Q+   +  T    AA        NE   +D      LE    +G 
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159
Query: 234 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 290
             LH A      ++V+ L      L +     G+T LH+AV+ Q+  V++LLL+A A
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 14/177 (7%)
Query: 126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 185
           N+LG+TAL  AA  G    V +L  Y+   G+    R G   LH+A     H    VLL 
Sbjct: 42  NDLGQTALHLAAILGEASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 186 HDPS---------LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL---LEISRSNGK 233
             PS         L+Q+   +  T    AA        NE   +D      LE    +G 
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159
Query: 234 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 290
             LH A      ++V+ L      L +     G+T LH+AV+ Q+  V++LLL+A A
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           VN ++E G T L  AA  GH+E+V  LLKY     +  ++  G  PLH+AA++GH  IV+
Sbjct: 40  VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD--VNAEDNFGITPLHLAAIRGHLEIVE 97
Query: 182 VLLDH 186
           VLL H
Sbjct: 98  VLLKH 102

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AAR G  D V+ L++    +    D+ G T LH+A +    E+V++LL+   A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLKY-GADVNAEDN 78
Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           FG T LH+A  +   EIV  LL     +VNA  +  KTA DI+
Sbjct: 79  FGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 120

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           VN  ++ G T L  AA  G +E+V  LLK      +   + +G  PLH+AA  GH  IV+
Sbjct: 32  VNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD--VNASDSAGITPLHLAAYDGHLEIVE 89
Query: 182 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
           VLL H   ++     +  TPL  AA  G   +V E+L K G  +    + G  A   +  
Sbjct: 90  VLLKHGADVN-AYDRAGWTPLHLAALSGQLEIV-EVLLKHGADVNAQDALGLTAFDISIN 147
Query: 242 QGHVDVVKAL 251
           QG  D+ + L
Sbjct: 148 QGQEDLAEIL 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 171 AAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS 230
           AA  G    V++L+ +   ++  T  +  TPL  AA  G   +V E+L K+G  +  S S
Sbjct: 13  AAAAGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDS 70
Query: 231 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 290
            G   LH AA  GH+++V+ LL     +    D+ G T LH+A      E+V++LL+   
Sbjct: 71  AGITPLHLAAYDGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLK-HG 128
Query: 291 AIVMLPDKFGNTALHVATRKKRTEI 315
           A V   D  G TA  ++  + + ++
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDL 153

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 96/256 (37%), Gaps = 51/256 (19%)
Query: 133 LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSL 190
           L  A     +++V +LL+        ++   G+ PLH A       IV++LL H  DP L
Sbjct: 29  LIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Query: 191 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS---------------------- 228
            +  G   ATP + AA  G   ++   LSK   + E                        
Sbjct: 88  RKKNG---ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 144
Query: 229 --------------------RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 268
                               R  G  AL  AA +GHV+V+K LL +        D  G+ 
Sbjct: 145 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 204
Query: 269 ALHMAV---KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 325
           AL  A+        E +  LL    A V +  + G T L +A  KK   +V  LL     
Sbjct: 205 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 264
Query: 326 NVNALTRDHKTALDIA 341
            +N    D KTAL +A
Sbjct: 265 EINDTDSDGKTALLLA 280

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 96/256 (37%), Gaps = 51/256 (19%)
Query: 133 LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSL 190
           L  A     +++V +LL+        ++   G+ PLH A       IV++LL H  DP L
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 191 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS---------------------- 228
            +  G   ATP + AA  G   ++   LSK   + E                        
Sbjct: 68  RKKNG---ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124
Query: 229 --------------------RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 268
                               R  G  AL  AA +GHV+V+K LL +        D  G+ 
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 269 ALHMAV---KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 325
           AL  A+        E +  LL    A V +  + G T L +A  KK   +V  LL     
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244
Query: 326 NVNALTRDHKTALDIA 341
            +N    D KTAL +A
Sbjct: 245 EINDTDSDGKTALLLA 260

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 157 LTRKNRSGFDPLHIAAVQGHHAIVQVLLD--HDPSLSQTTGPSNATPLVSAATRGHTAVV 214
           L  +N     PLH+A +     I + LL    DP L    G    TPL  A  +G  A V
Sbjct: 38  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG---NTPLHLACEQGCLASV 94
Query: 215 NELLSKDG-----GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA 269
             L           +L+ +  NG   LH A+  G++ +V+ L+S    +  +    G+TA
Sbjct: 95  GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154
Query: 270 LHMAVKGQSCEVVKLLLEADAAI 292
           LH+AV  Q+ ++V LLL+  A +
Sbjct: 155 LHLAVDLQNPDLVSLLLKCGADV 177

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 157 LTRKNRSGFDPLHIAAVQGHHAIVQVLLD--HDPSLSQTTGPSNATPLVSAATRGHTAVV 214
           L  +N     PLH+A +     I + LL    DP L    G    TPL  A  +G  A V
Sbjct: 35  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG---NTPLHLACEQGCLASV 91
Query: 215 NELLSKDG-----GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA 269
             L           +L+ +  NG   LH A+  G++ +V+ L+S    +  +    G+TA
Sbjct: 92  GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 151
Query: 270 LHMAVKGQSCEVVKLLLEADAAI 292
           LH+AV  Q+ ++V LLL+  A +
Sbjct: 152 LHLAVDLQNPDLVSLLLKCGADV 174

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 27/232 (11%)
Query: 118 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH 177
           R + +N  N  G TAL  A    ++++V  L++      + + +  G+ PLH AA  G+ 
Sbjct: 62  RGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN--INQPDNEGWIPLHAAASCGYL 119
Query: 178 AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH 237
            I + L+     +       + TPL  A       ++   +++ G  +E +R   +  + 
Sbjct: 120 DIAEYLISQGAHVGAVNSEGD-TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML 178
Query: 238 FAARQ----GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 293
             ARQ    GH++ V            R  K G TALH+A      EV+KLL++A    V
Sbjct: 179 RDARQWLNSGHINDV------------RHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDV 225
Query: 294 MLPDKFGNTALHVATRKKRTE---IVTELLSLPDTNVNALTRDHKTALDIAE 342
            + D  G T LH A    + E   I+ E L     ++ A+ +  +TA D+A+
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENL----CDMEAVNKVGQTAFDVAD 273

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AAR G  D V+ L++    +A + DK G T LH+A +    EVVKLLLEA  A V   DK
Sbjct: 31  AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDK 88
Query: 299 FGNTALHVA 307
           FG TA  ++
Sbjct: 89  FGKTAFDIS 97

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AAR G  D V+ L++    +A + DK G T LH+A +    EVVKLLLEA  A V   DK
Sbjct: 13  AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA-GADVNAQDK 70
Query: 299 FGNTALHVA 307
           FG TA  ++
Sbjct: 71  FGKTAFDIS 79

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 152 STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT 211
           S++E L  +  +    +H  A QG    +   ++ +  ++ T      TPL+ AA  G  
Sbjct: 8   SSRENLYFQGANSLS-VHQLAAQGEMLYLATRIEQENVINHTD-EEGFTPLMWAAAHGQI 65
Query: 212 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH 271
           AVV E L ++G   ++     ++AL  A  +G+ D+VK LL     +    D  G T L 
Sbjct: 66  AVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLL 123
Query: 272 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNT---ALHVATRKKRTEIVTELLSL 322
            AV G   + VK+LLE+ A   +  D   N+   A+ +  R  +  I + LL L
Sbjct: 124 YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 177

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           TPL+ AA  G  AVV E L ++G   ++     ++AL  A  +G+ D+VK LL     + 
Sbjct: 36  TPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV- 93
Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT---ALHVATRKKRTEIV 316
              D  G T L  AV G   + VK+LLE+ A   +  D   N+   A+ +  R  +  I 
Sbjct: 94  NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 153
Query: 317 TELLSL 322
           + LL L
Sbjct: 154 SHLLKL 159

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           TPL+ AA  G  AVV E L ++G   ++     ++AL  A  +G+ D+VK LL     + 
Sbjct: 38  TPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV- 95
Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT---ALHVATRKKRTEIV 316
              D  G T L  AV G   + VK+LLE+ A   +  D   N+   A+ +  R  +  I 
Sbjct: 96  NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
Query: 317 TELLSL 322
           + LL L
Sbjct: 156 SHLLKL 161

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           D  LH AA+RG+L  +++ L                D  V       VN +++ G TAL+
Sbjct: 74  DNPLHEAAKRGNLSWLRECL----------------DNRVG------VNGLDKAGSTALY 111
Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
            A   GH ++V  L      E L ++N+ G   LH AA +G+  IVQ+LL
Sbjct: 112 WACHGGHKDIVEXLFTQPNIE-LNQQNKLGDTALHAAAWKGYADIVQLLL 160

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 201 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR 260
           PL  AA RG+ + + E L    G+  + ++ G  AL++A   GH D+V+ L ++      
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 261 RTDKKGQTALHMAVKGQSCEVVKLLL 286
           + +K G TALH A      ++V+LLL
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLL 160

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 234 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 293
           N LH AA++G++  ++  L     +    DK G TAL+ A  G   ++V+ L       +
Sbjct: 75  NPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 294 MLPDKFGNTALHVATRKKRTEIVTELLS 321
              +K G+TALH A  K   +IV  LL+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLA 161

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           VN +++ G T L  AA +GH+E+V  LLK+     +  ++  G  PLH+AA  GH  IV+
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD--VNARDIWGRTPLHLAATVGHLEIVE 97
Query: 182 VLLDH 186
           VLL++
Sbjct: 98  VLLEY 102

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 232 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 291
           G   LH AA++GH+++V+ LL     +  R D  G+T LH+A      E+V++LLE   A
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADVNAR-DIWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 292 IVMLPDKFGNTALHVA 307
            V   DKFG TA  ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AAR G  D V+ L++    +    D+KG T LH+A      E+V++LL+   A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADYDHLEIVEVLLKH-GADVNAHDN 78
Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
            G+T LH+A      EIV E+L     +VNA  +  KTA DI+
Sbjct: 79  DGSTPLHLAALFGHLEIV-EVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           VN +++ G T L  AA +GH+E+V  LLK+     +   +  G  PLH+AA  GH  IV+
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD--VNASDSWGRTPLHLAATVGHLEIVE 97
Query: 182 VLLDH 186
           VLL++
Sbjct: 98  VLLEY 102

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 232 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 291
           G   LH AA++GH+++V+ LL     +   +D  G+T LH+A      E+V++LLE   A
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 292 IVMLPDKFGNTALHVA 307
            V   DKFG TA  ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           VN  +E G T L+ A   GH+E+V  LLK      +   +  GF PLH+AA  GH  I +
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD--VNAVDAIGFTPLHLAAFIGHLEIAE 97
Query: 182 VLLDH 186
           VLL H
Sbjct: 98  VLLKH 102

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AAR G  D V+ L++    +  + D+ G T L++A      E+V++LL+ + A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDA 78
Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEI 353
            G T LH+A      EI  E+L     +VNA  +  KTA DI+ G   +E+ +EI
Sbjct: 79  IGFTPLHLAAFIGHLEI-AEVLLKHGADVNAQDKFGKTAFDISIG-NGNEDLAEI 131

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           VN +++ G T L  AA +GH+E+V  LLK+     +   +  G  PLH+AA  GH  IV+
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD--VNASDIWGRTPLHLAATVGHLEIVE 97
Query: 182 VLLDH 186
           VLL++
Sbjct: 98  VLLEY 102

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 232 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 291
           G   LH AA++GH+++V+ LL     +   +D  G+T LH+A      E+V++LLE   A
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 292 IVMLPDKFGNTALHVA 307
            V   DKFG TA  ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 131 TALFTAADKGHIEVVNELLKYSTK-EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS 189
           + L  A   GH+  V  LLK+  +  G+T    +   PL  A V G    V +LL H  S
Sbjct: 94  SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT---PLFNACVSGSWDCVNLLLQHGAS 150
Query: 190 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 249
           +   +    A+P+  AA RGH   VN L++  GG ++   S+    L+ A        VK
Sbjct: 151 VQPES--DLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVK 207
Query: 250 ALLSKDPQLARRTDKKGQ-TALHMAVKGQSCEVVKLLLEADA 290
            LL      A     KGQ + LH  V+  S E+  LL++  A
Sbjct: 208 KLLESG---ADVNQGKGQDSPLHAVVRTASEELACLLMDFGA 246

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 39/193 (20%)
Query: 163 SGFDPLHIAAVQGHH---------------------------------AIVQVLLDHDPS 189
           S + P+H AA+ GH                                  + V++LL H   
Sbjct: 58  SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 190 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 249
           ++  T   + TPL +A   G    VN LL    G      S+  + +H AAR+GHV+ V 
Sbjct: 118 VNGVTADWH-TPLFNACVSGSWDCVNLLLQH--GASVQPESDLASPIHEAARRGHVECVN 174
Query: 250 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR 309
           +L++    +  +    G T L++A + Q    VK LLE+ A +     K  ++ LH   R
Sbjct: 175 SLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVVR 231
Query: 310 KKRTEIVTELLSL 322
               E+   L+  
Sbjct: 232 TASEELACLLMDF 244

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 10/170 (5%)
Query: 126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 185
           N   +  L  AA  G +E V +L    +      + R    PLH AA     ++V+ LL 
Sbjct: 9   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRVSVVEYLLQ 67
Query: 186 HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 245
           H   +          PL +A + GH  V  ELL K G ++ ++       LH AA +G  
Sbjct: 68  HGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKY 125
Query: 246 DVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 293
           ++ K LL    DP    + ++ G T L +   G +   ++ LL  DAA++
Sbjct: 126 EICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQDLLRGDAALL 170

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 232 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 291
           G + LH AA+ GH    + LL        RT K  +T LHMA       +V++LL+   A
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHANIVEVLLK-HGA 91
Query: 292 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
            V   D    TALH AT     E+V ELL     +V+  ++  KTA DI+
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVV-ELLIKYGADVHTQSKFCKTAFDIS 140

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 15/147 (10%)
Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           +N+ ++ G + L  A  +G   VV  L+    +  +   NR    PLH+AA  GH  IVQ
Sbjct: 32  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR--INVMNRGDDTPLHLAASHGHRDIVQ 89
Query: 182 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
            LL +   ++      N  PL  A   G   V  +L++ +G L+ I    G+        
Sbjct: 90  KLLQYKADINAVNEHGN-VPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMP------ 141
Query: 242 QGHVDVVKALLSKDPQLARRTDKKGQT 268
              VD  KA L +   L  R +K GQ 
Sbjct: 142 ---VDKAKAPLRE--LLRERAEKMGQN 163

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 165 FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL 224
            D +     +G+   V++ LD+  +          +PL  A   G +AVV E+L   G  
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EMLIMRGAR 64
Query: 225 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 284
           + +        LH AA  GH D+V+ LL     +    ++ G   LH A      +V + 
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAED 123
Query: 285 LLEADAAIVMLPDKFG 300
           L+ A+ A+V + +K+G
Sbjct: 124 LV-ANGALVSICNKYG 138

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 185
           N   +  L  AA  G +E V +L    +      + R    PLH AA     ++V+ LL 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRVSVVEYLLQ 63
Query: 186 HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 245
           H   +          PL +A + GH  V  ELL K G ++ ++       LH AA +G  
Sbjct: 64  HGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121
Query: 246 DVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 292
           ++ K LL    DP    + ++ G T L +   G +   ++ LL  DAA+
Sbjct: 122 EICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQDLLRGDAAL 165

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 39/193 (20%)
Query: 163 SGFDPLHIAAVQGHH---------------------------------AIVQVLLDHDPS 189
           S + P+H AA+ GH                                  + V++LL H   
Sbjct: 2   SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 190 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 249
           ++  T   + TPL +A   G    VN LL + G  ++   S+  + +H AAR+GHV+ V 
Sbjct: 62  VNGVTADWH-TPLFNACVSGSWDCVN-LLLQHGASVQ-PESDLASPIHEAARRGHVECVN 118
Query: 250 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR 309
           +L++    +  +    G T L++A + Q    VK LLE+ A +     K  ++ LH   R
Sbjct: 119 SLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVAR 175
Query: 310 KKRTEIVTELLSL 322
               E+   L+  
Sbjct: 176 TASEELACLLMDF 188

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 261
           L+ AA  G    V  +L+ +G  +  +   G   LH AA  GH+++V+ LL K+      
Sbjct: 18  LLEAARAGQDDEV-RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-KNGADVNA 75
Query: 262 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 307
           T   G+T LH+A      E+V++LL+   A V   DKFG TA  ++
Sbjct: 76  TGNTGRTPLHLAAWADHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 120

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 24/215 (11%)
Query: 131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 190
           T L  AA    + +V  LL++     +  K++ G  PLH A   GH+ + ++LL H   +
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117
Query: 191 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKA 250
           +        TPL  AA++    V + LLS  G    +   +GK+A         VD    
Sbjct: 118 N-AMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSA---------VD---- 162
Query: 251 LLSKDPQLARR--TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH--V 306
            ++  P+L  R   + KG + L  A +    +V K L  A   I     +   TALH  V
Sbjct: 163 -MAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL--ALEIINFKQPQSHETALHCAV 219
Query: 307 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           A+   + + V ELL     NVN   +D  T L +A
Sbjct: 220 ASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVA 254

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 185
           N   +  L  AA  G +E V +L    +      + R    PLH AA     ++V+ LL 
Sbjct: 7   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRVSVVEYLLQ 65
Query: 186 HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 245
           H   +          PL +A + GH  V  ELL K G ++ ++       LH AA +G  
Sbjct: 66  HGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKY 123
Query: 246 DVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 292
           ++ K LL    DP    + ++ G T L +   G +   ++ LL  DAA+
Sbjct: 124 EICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQDLLRGDAAL 167

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
           AAR G  D V+ L++    +    DK G T LH+A      E+V++LL+ + A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGADVNAIDA 78
Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
            G T LH+       EIV  LL     +VNA  +  KTA DI+
Sbjct: 79  IGETPLHLVAMYGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 120

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 157 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 214
           + + +  GF PL  A+  G    V+ LL+   DP +         + L  A+T G+T +V
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI---LAKERESALSLASTGGYTDIV 85
Query: 215 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 274
             LL +D  +  I   NG   L +A R  HV  V+ALL++   L    D  G T + +AV
Sbjct: 86  GLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYTPMDLAV 143

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 15/146 (10%)
Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
           +N+ ++ G + L  A  +G   VV  L+    +  +   NR    PLH+AA  GH  IVQ
Sbjct: 27  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR--INVMNRGDDTPLHLAASHGHRDIVQ 84
Query: 182 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
            LL +   ++      N  PL  A   G   V  +L++ +G L+ I    G+        
Sbjct: 85  KLLQYKADINAVNEHGN-VPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMP------ 136
Query: 242 QGHVDVVKALLSKDPQLARRTDKKGQ 267
              VD  KA L +   L  R +K GQ
Sbjct: 137 ---VDKAKAPLRE--LLRERAEKMGQ 157

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 4/165 (2%)
Query: 166 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 225
           D +     +G+   V++ LD+  +          +PL  A   G +AVV E+L   G  +
Sbjct: 2   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EMLIMRGARI 60
Query: 226 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 285
            +        LH AA  GH D+V+ LL     +    ++ G   LH A      +V + L
Sbjct: 61  NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDL 119
Query: 286 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL 330
           + A+ A+V + +K+G   +  A    R E++ E       N+N +
Sbjct: 120 V-ANGALVSICNKYGEMPVDKAKAPLR-ELLRERAEKMGQNLNRI 162

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 160 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 219
           ++ +G  PLH A       + Q+LL +  +          TPL+ AA      +V +L++
Sbjct: 80  QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 139
Query: 220 KDGGLLEISRSNGKNALHFAARQGHVDVVKALL----SKDPQLARRTDKKGQTALHMAVK 275
            D   +  + ++GK ALH+AA   + + V  LL    ++D Q     D K +T L +A +
Sbjct: 140 ADAD-INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ-----DDKDETPLFLAAR 193
Query: 276 GQSCEVVKLLLE 287
             S E  K LL+
Sbjct: 194 EGSYEASKALLD 205

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 200 TPLVSAATRGHTAVVNELL-SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 258
           TP  +AA +     +++LL  +D   ++    NG+ AL F A  G    V+ L      L
Sbjct: 47  TPWWTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 103
Query: 259 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 307
             R  + G TALHMA      EVV+ L+E  A I  + D+ G TAL +A
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 151

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 247 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 306
           V+   + +   L  +TD+ G+TALH+A +    +  K LLEA +A   + D  G T LH 
Sbjct: 3   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADAXIQDNMGRTPLHA 61
Query: 307 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 344
           A       +   LL    T+++A   D  T L +A  L
Sbjct: 62  AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARL 99

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 200 TPLVSAATRGHTAVVNELL-SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 258
           TP  +AA +     +++LL  +D   ++    NG+ AL F A  G    V+ L      L
Sbjct: 46  TPWWTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102
Query: 259 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 307
             R  + G TALHMA      EVV+ L+E  A I  + D+ G TAL +A
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 150

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 44/205 (21%)
Query: 130 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS 189
           E+ L  AA +  ++ +++LLK+   E + ++   G   LHIAA+  +     VL++  P 
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 190 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 249
           L          P+ S    G TA                       LH A    +V++V+
Sbjct: 63  LV-------FEPMTSELYEGQTA-----------------------LHIAVINQNVNLVR 92
Query: 250 ALLSKDPQLARRTD------------KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD 297
           ALL++   ++ R                G+  L  A    S E+V+LL+E  A I    D
Sbjct: 93  ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQD 151
Query: 298 KFGNTALHVATRKKRTEIVTELLSL 322
             GNT LH+   +       ++ +L
Sbjct: 152 SLGNTVLHILILQPNKTFACQMYNL 176

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 157 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 214
           + + +  GF PL  A+  G    V+ LL+   DP +         + L  A+T G+T +V
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI---LAKERESALSLASTGGYTDIV 85
Query: 215 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 274
             LL +D  +  I   NG   L +A    HV  V+ALL++   L    D  G T + +AV
Sbjct: 86  GLLLERDVDI-NIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD-SGYTPMDLAV 143

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 105 LSGAEFDTEVAEIRSSVVNEV------NELGETALFTAADKGHIEVVNELLKYSTKEGLT 158
           LSGA    +V E+R  +  E+      N  G+TAL      G   +  ELLK      + 
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV- 63
Query: 159 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 218
            ++ SG  P+H AA  G    ++VL++H   ++   G + A P+  A   GHTAVV+ L 
Sbjct: 64  -QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLA 121
Query: 219 SKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 251
           ++    L    + G   L  A ++G  D+V  L
Sbjct: 122 AESD--LHRRDARGLTPLELALQRGAQDLVDIL 152

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 105 LSGAEFDTEVAEIRSSVVNEV------NELGETALFTAADKGHIEVVNELLKYSTKEGLT 158
           LSGA    +V E+R  +  E+      N  G+TAL      G   +  ELLK      + 
Sbjct: 12  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV- 69
Query: 159 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 218
            ++ SG  P+H AA  G    ++VL++H   ++   G + A P+  A   GHTAVV+ L 
Sbjct: 70  -QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLA 127
Query: 219 SKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 251
           ++    L    + G   L  A ++G  D+V  L
Sbjct: 128 AESD--LHRRDARGLTPLELALQRGAQDLVDIL 158

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 195 GPSNATPLVSAATRG-------------HTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
           GP   TPL+ A+  G               AV+++ + +   L   +   G+ ALH AAR
Sbjct: 8   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 67
Query: 242 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 301
               D  K LL      A   D  G+T LH AV   +  V ++L+   A  +      G 
Sbjct: 68  YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 126
Query: 302 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 338
           T L +A R     ++ +L++    +VNA+    K+AL
Sbjct: 127 TPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 162

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 195 GPSNATPLVSAATRG-------------HTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
           GP   TPL+ A+  G               AV+++ + +   L   +   G+ ALH AAR
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66
Query: 242 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 301
               D  K LL      A   D  G+T LH AV   +  V ++L+   A  +      G 
Sbjct: 67  YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125
Query: 302 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 338
           T L +A R     ++ +L++    +VNA+    K+AL
Sbjct: 126 TPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 161

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 198 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ 257
           N TPL+ A   G    +++L+ ++   LE     G  AL +A +   + + + LLSK   
Sbjct: 35  NRTPLMVACMLGMENAIDKLV-ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93
Query: 258 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF--GNTALHVATRKKRTEI 315
           +  + D  G+T L  ++     E+   LLE  A +    D+   G T L VA++  R+EI
Sbjct: 94  VNTK-DFSGKTPLMWSIIFGYSEMSYFLLEHGANV---NDRNLEGETPLIVASKYGRSEI 149
Query: 316 VTELLSL 322
           V +LL L
Sbjct: 150 VKKLLEL 156

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 216 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 275
           + + ++GG L+   ++G  ALH+AA     D +K LL K   L    ++ G+TAL +A K
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARK 249
Query: 276 GQSCEVVKLLLEADAAIVMLP 296
               E  +LL +A A     P
Sbjct: 250 KHHKECEELLEQAQAGTFAFP 270

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	591
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-51
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-51
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-50
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-47
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-50
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-46
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-50
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-49
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-41
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-32
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-47
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-37
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-35
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-47
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-46
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-47
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-46
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-42
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-46
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-45
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-46
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-46
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-46
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-45
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-41
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-44
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-33
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-44
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-41
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-34
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-43
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-43
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-22
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-43
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-43
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-43
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-38
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-36
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-42
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-41
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-40
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-37
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-36
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-40
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-37
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-11
2rfa_A	232	Transient receptor potential cation channel subfa	4e-40
2rfa_A	232	Transient receptor potential cation channel subfa	5e-33
2rfa_A	232	Transient receptor potential cation channel subfa	1e-28
2rfa_A	232	Transient receptor potential cation channel subfa	2e-12
2rfa_A	232	Transient receptor potential cation channel subfa	5e-12
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-38
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-38
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-37
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-37
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-37
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-36
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-32
2etb_A	256	Transient receptor potential cation channel subfam	6e-35
2etb_A	256	Transient receptor potential cation channel subfam	3e-31
2etb_A	256	Transient receptor potential cation channel subfam	5e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-35
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-33
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-34
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-24
2pnn_A	273	Transient receptor potential cation channel subfa	3e-34
2pnn_A	273	Transient receptor potential cation channel subfa	2e-33
2pnn_A	273	Transient receptor potential cation channel subfa	2e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-33
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-33
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-31
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-33
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-33
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-30
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-32
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-31
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-23
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-30
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-28
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-29
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-29
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-24
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-28
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-28
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-28
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-26
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-26
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-26
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-25
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-24
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-21
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-04

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  174 bits (445), Expect = 3e-51
 Identities = 53/219 (24%), Positives = 82/219 (37%), Gaps = 9/219 (4%)

Query: 128 LGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLD 185
           +    L  A  +     V ELL     +   L +K++ G  PLH +     H I   LL 
Sbjct: 1   MSNYPLHQACMENEFFKVQELLH---SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57

Query: 186 H--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL-LEISRSNGKNALHFAARQ 242
              + +L      S  TP   A + G+  VV  L  +     L    + G   LH A  +
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117

Query: 243 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT 302
              +V + L+     + R  DK  Q  LH A    S ++++LL     + V   DK G T
Sbjct: 118 KWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176

Query: 303 ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
            L  A  +   +    L+       + +      A D+A
Sbjct: 177 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  180 bits (460), Expect = 4e-51
 Identities = 85/266 (31%), Positives = 116/266 (43%), Gaps = 29/266 (10%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFT 135
           T LH+A+  G L  VK +L            GA              N  N   ET L  
Sbjct: 16  TPLHVASFMGHLPIVKNLL----------QRGAS------------PNVSNVKVETPLHM 53

Query: 136 AADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG 195
           AA  GH EV   LL+   K  +  K +    PLH AA  GH  +V++LL+++ + +  T 
Sbjct: 54  AARAGHTEVAKYLLQNKAK--VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT 111

Query: 196 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 255
            +  TPL  AA  GH   V  LL K           G   LH AA+ G V V + LL +D
Sbjct: 112 -AGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169

Query: 256 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 315
                   K G T LH+AV   + ++VKLLL    +    P   G T LH+A ++ + E+
Sbjct: 170 AHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHIAAKQNQVEV 227

Query: 316 VTELLSLPDTNVNALTRDHKTALDIA 341
              LL     + NA +    T L +A
Sbjct: 228 ARSLLQY-GGSANAESVQGVTPLHLA 252

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  178 bits (454), Expect = 4e-50
 Identities = 68/278 (24%), Positives = 112/278 (40%), Gaps = 30/278 (10%)

Query: 71  GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGE 130
           G++  T LH+A    +L  VK +L            G               +     G 
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLL----------PRGGS------------PHSPAWNGY 213

Query: 131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 190
           T L  AA +  +EV   LL+Y        ++  G  PLH+AA +GH  +V +LL    + 
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGS--ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271

Query: 191 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKA 250
           +     S  TPL   A  GH  V + L+   G +++ +   G   LH A+  G++ +VK 
Sbjct: 272 NLGNK-SGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKF 329

Query: 251 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 310
           LL     +  +  K G + LH A +    ++V LLL+  A+        G T L +A R 
Sbjct: 330 LLQHQADVNAK-TKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRL 387

Query: 311 KRTEIVTELLSLPD--TNVNALTRDHKTALDIAEGLPS 346
               +   L  + D  + V    +   +  +  + +  
Sbjct: 388 GYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILD 425

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  169 bits (430), Expect = 8e-47
 Identities = 77/222 (34%), Positives = 102/222 (45%), Gaps = 11/222 (4%)

Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 179
                E G T L  A+  GH+ +V  LL+     G      N     PLH+AA  GH  +
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQR----GASPNVSNVKVETPLHMAARAGHTEV 62

Query: 180 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 239
            + LL +   ++      + TPL  AA  GHT +V  LL        ++ + G   LH A
Sbjct: 63  AKYLLQNKAKVNAKAK-DDQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTPLHIA 120

Query: 240 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 299
           AR+GHV+ V ALL K+   A    KKG T LH+A K     V +LLLE DA       K 
Sbjct: 121 AREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKN 178

Query: 300 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           G T LHVA      +IV  LL     + ++   +  T L IA
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIA 219

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 98.7 bits (247), Expect = 3e-22
 Identities = 47/224 (20%), Positives = 74/224 (33%), Gaps = 70/224 (31%)

Query: 69  VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNEL 128
           +  +   T LHL AQ G +     ++            G              V+    +
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVADVLI----------KHGVM------------VDATTRM 310

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 188
           G T L  A+  G+I++V  LL++     +  K + G+ PLH AA QGH  IV +LL +  
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQAD--VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG- 367

Query: 189 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 248
                                  A  NE             S+G   L  A R G++ V 
Sbjct: 368 -----------------------ASPNE---VS--------SDGTTPLAIAKRLGYISVT 393

Query: 249 KALLSKDPQLAR--RTDKKGQTALHMAVKGQSCEVVKLLLEADA 290
             L     + +    +DK   +             V  +L+   
Sbjct: 394 DVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDVSE 428

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  171 bits (437), Expect = 6e-50
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 10/223 (4%)

Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 179
           +  +++     +  A   G  E   EL++     G  + + ++     LH AA+     +
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEA----GYDVRQPDKENVTLLHWAAINNRIDL 57

Query: 180 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 239
           V+  +     + Q  G  N+TPL  A  +GH ++V +L+   G    +    G + +H A
Sbjct: 58  VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLA 116

Query: 240 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV-KGQSCEVVKLLLEADAAIVMLPDK 298
           A+ GH  +V  L++K   +    D+ G T L  A  +  S +  +LLL  + ++ +    
Sbjct: 117 AQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY 175

Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
             NTALH A     T +++ LL     NV+A     ++ALD+A
Sbjct: 176 HKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  162 bits (412), Expect = 2e-46
 Identities = 64/251 (25%), Positives = 106/251 (42%), Gaps = 35/251 (13%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
            ++  A Q G     ++ +  G D                       V + ++   T L 
Sbjct: 11  WDIVKATQYGIYERCRELVEAGYD-----------------------VRQPDKENVTLLH 47

Query: 135 TAADKGHIEVVNELLKY-STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLS 191
            AA    I++V   +   +  +           PLH A  QGH ++V  L+ +  DPSL 
Sbjct: 48  WAAINNRIDLVKYYISKGAIVD--QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105

Query: 192 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH-VDVVKA 250
              G    + +  AA  GHT++V  L++K G  +++   NG   L +AA + H VD  + 
Sbjct: 106 DGEG---CSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161

Query: 251 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 310
           LL+ +  +         TALH AV   +  V+ LLLEA A +    +  G +AL +A ++
Sbjct: 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA-QNIKGESALDLAKQR 220

Query: 311 KRTEIVTELLS 321
           K   ++  L  
Sbjct: 221 KNVWMINHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  112 bits (284), Expect = 1e-28
 Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 32/186 (17%)

Query: 73  HNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGET 131
            N T LH A ++G L  V Q + YG D                        + ++  G +
Sbjct: 75  LNSTPLHWATRQGHLSMVVQLMKYGAD-----------------------PSLIDGEGCS 111

Query: 132 ALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHA-IVQVLLDHDP 188
            +  AA  GH  +V  L+      G  +   +++G  PL  AA + H     ++LL  + 
Sbjct: 112 CIHLAAQFGHTSIVAYLIAK----GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV 167

Query: 189 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 248
           S++        T L  A   G+T V++ LL   G  ++     G++AL  A ++ +V ++
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMI 226

Query: 249 KALLSK 254
             L   
Sbjct: 227 NHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 44.7 bits (107), Expect = 3e-05
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 24/86 (27%)

Query: 66  VKQVTGRHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNE 124
           V      H +T LH A   G+   +   +  G +                       V+ 
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-----------------------VDA 205

Query: 125 VNELGETALFTAADKGHIEVVNELLK 150
            N  GE+AL  A  + ++ ++N L +
Sbjct: 206 QNIKGESALDLAKQRKNVWMINHLQE 231

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  171 bits (437), Expect = 2e-49
 Identities = 57/279 (20%), Positives = 88/279 (31%), Gaps = 37/279 (13%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           T LHLA        +   + +                          ++  N+LG+TAL 
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGH--------------------EYLDLQNDLGQTALH 50

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ-- 192
            AA  G    V +L        +    R G   LH+A     H    VLL   PS  +  
Sbjct: 51  LAAILGEASTVEKLYAAGAG--VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA 108

Query: 193 ----------TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 242
                      T  ++  P    +                  LE    +G   LH A   
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168

Query: 243 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT 302
              ++V+ L      L +     G+T LH+AV+ Q+  V++LLL+A A         G T
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRT 227

Query: 303 ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
            L  A  +    +   L +           D  +    +
Sbjct: 228 PLGSALLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSS 265

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  150 bits (380), Expect = 3e-41
 Identities = 57/237 (24%), Positives = 85/237 (35%), Gaps = 21/237 (8%)

Query: 121 VVNEVNELGETALFTAADKGHIEVVNELLKYS-TKEGLTRKNRSGFDPLHIAAVQGHHAI 179
           V   V E G+TAL  A    H   ++ LL +S   E L  +N  G   LH+AA+ G  + 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 180 VQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK---------DGGLLEIS 228
           V+ L        +++  G    T L  A           LL           D  L +  
Sbjct: 61  VEKLYAAGAGVLVAERGG---HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 229 RSNGKN----ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 284
                     A   +      +          QL    +  G T LH+AV  +  E+V+L
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRL 176

Query: 285 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           L +A A +       G T LH+A   +   ++  LL     +  A     +T L  A
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSA 232

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  125 bits (316), Expect = 2e-32
 Identities = 31/215 (14%), Positives = 60/215 (27%), Gaps = 14/215 (6%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNE-LGETALF 134
           T LHLA +         +L                  + ++   +   +           
Sbjct: 80  TALHLACRVRAHTCACVLL----------QPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 194
             +            +   +  L  +N  G  PLH+A +     +V++L D    L++  
Sbjct: 130 VDSQPNPENEEEPRDE-DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 195 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 254
                TPL  A      +V+  LL   G         G+  L  A  + +  + + L + 
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

Query: 255 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 289
                        +    +      +      E D
Sbjct: 248 GAPEPED-GGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =   99 bits (250), Expect = 1e-23
 Identities = 28/196 (14%), Positives = 49/196 (25%), Gaps = 42/196 (21%)

Query: 69  VTGRHNDTELHLAAQRGDLGAVKQIL--YGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVN 126
            T   +     + +Q       +     + +                        +   N
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-----------------------LEAEN 155

Query: 127 ELGETALFTAADKGHIEVVNELLKY-------STKEGLTRKNRSGFDPLHIAAVQGHHAI 179
             G T L  A      E+V  L              G T        PLH+A      ++
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT--------PLHLAVEAQAASV 207

Query: 180 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 239
           +++LL      +        TPL SA  R +  +   L +  G        +  +    +
Sbjct: 208 LELLLKAGADPTARMY-GGRTPLGSALLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSS 265

Query: 240 ARQGHVDVVKALLSKD 255
                 D        D
Sbjct: 266 GSDSDSDNRDEGDEYD 281

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  167 bits (425), Expect = 1e-47
 Identities = 72/290 (24%), Positives = 109/290 (37%), Gaps = 56/290 (19%)

Query: 74  NDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEV-NELGET 131
           ++  L  A Q  D+  V+Q +  G +                       VN    E G T
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGAN-----------------------VNFQEEEGGWT 41

Query: 132 ALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--D 187
            L  A      ++V  LL++    G     + ++G  P  +AA+ G   ++++ L    D
Sbjct: 42  PLHNAVQMSREDIVELLLRH----GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97

Query: 188 PSLSQTTGPSNATPLVSAATRGHTAVVNELLS---------KDGGLLEISRSNGKNALHF 238
            +     G    T  + AA  G    +  L           K     E  R  G  AL  
Sbjct: 98  VNECDFYG---FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 239 AARQGHVDVVKALLSK---DPQLARRTDKKGQTALHMAV----KGQSCEVVKLLLEADAA 291
           AA +GHV+V+K LL +   D       D  G+ AL  A+          +  LLL+  A 
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNAC---DNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 292 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           +  +  + G T L +A  KK   +V  LL      +N    D KTAL +A
Sbjct: 212 V-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  139 bits (353), Expect = 2e-37
 Identities = 53/219 (24%), Positives = 74/219 (33%), Gaps = 19/219 (8%)

Query: 153 TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTA 212
             E            L  A       +VQ LL+   +++        TPL +A       
Sbjct: 2   AVEDNH--------LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED 53

Query: 213 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM 272
           +V  LL   G    + + NG      AA  G V ++K  LSK   +    D  G TA   
Sbjct: 54  IVELLLRH-GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFME 111

Query: 273 AVKGQSCEVVKLLLEADAAI---------VMLPDKFGNTALHVATRKKRTEIVTELLSLP 323
           A      + +K L +  A +              K G TAL  A  K   E++  LL   
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171

Query: 324 DTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 362
             +VNA     + AL  A       +   I   L   GA
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  131 bits (333), Expect = 9e-35
 Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 30/243 (12%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGN-----LSGAEF--DTEVAEI---RSSVVNE 124
           T LH A Q      V+  + +G D  +           A      ++ ++   + + VNE
Sbjct: 41  TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE 100

Query: 125 VNELGETALFTAADKGHIEVVNELL--------KYSTKEGLTRKNRSGFDPLHIAAVQGH 176
            +  G TA   AA  G ++ +  L         +  TKE   R  + G   L  AA +GH
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160

Query: 177 HAIVQVLLDH---DPSLSQTTGPSNATPLVSAATRGHT----AVVNELLSKDGGLLEISR 229
             ++++LLD    D +     G      L+ A          A+ + LL   G  + +  
Sbjct: 161 VEVLKILLDEMGADVNACDNMG---RNALIHALLSSDDSDVEAITHLLLDH-GADVNVRG 216

Query: 230 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 289
             GK  L  A  + H+ +V+ LL ++      TD  G+TAL +AV+ +  ++ +LL +  
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276

Query: 290 AAI 292
           A+ 
Sbjct: 277 AST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 84.4 bits (210), Expect = 3e-18
 Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 57/200 (28%)

Query: 57  IDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAE 116
           ++   K K  ++   +   T L  AA++G +  +K +L     +M     GA+       
Sbjct: 131 VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL----DEM-----GAD------- 174

Query: 117 IRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQ 174
                VN  + +G  AL  A        V  +       G  +  +   G  PL +A  +
Sbjct: 175 -----VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229

Query: 175 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN 234
            H  +VQ LL+                            +N+    D        S+GK 
Sbjct: 230 KHLGLVQRLLEQ-----------------------EHIEIND---TD--------SDGKT 255

Query: 235 ALHFAARQGHVDVVKALLSK 254
           AL  A       + + L  +
Sbjct: 256 ALLLAVELKLKKIAELLCKR 275

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  165 bits (420), Expect = 2e-47
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 12/246 (4%)

Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 179
               +E G+T L  A  +G++  V+ L+    + G  L   N     PLH+A +    ++
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 180 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK---DGGLLEISRSNGKNAL 236
           V++L+    S          T    A        +  LL         LE    +G  AL
Sbjct: 62  VRLLVTAGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120

Query: 237 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLP 296
           H A      + V+ LL +   +     K G++ L  AV+  S  +V+LLL+  A +    
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQ 179

Query: 297 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDC 356
              G++ALH A+ +    +V  L+     + +     + T L +A     S    +I   
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVA----RSRRVIDILRG 234

Query: 357 LARCGA 362
            A   A
Sbjct: 235 KATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  161 bits (410), Expect = 5e-46
 Identities = 53/253 (20%), Positives = 91/253 (35%), Gaps = 31/253 (12%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           DT LH+A  +G+L AV +++            G E            ++  N L +T L 
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQG------GRE------------LDIYNNLRQTPLH 51

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 194
            A       VV  L+           +R G    H+A        ++ LLD     +  T
Sbjct: 52  LAVITTLPSVVRLLVTAGAS--PMALDRHGQTAAHLACEHRSPTCLRALLDSA---APGT 106

Query: 195 GPSNA------TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 248
               A      T L  A        V  LL +   +  +   +G++ L  A     + +V
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166

Query: 249 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 308
           + LL     +       G +ALH A       +V+ L+ + A   +  +   +T L VA 
Sbjct: 167 QLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL-KNCHNDTPLMVAR 224

Query: 309 RKKRTEIVTELLS 321
            ++  +I+    +
Sbjct: 225 SRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  109 bits (276), Expect = 2e-27
 Identities = 45/228 (19%), Positives = 73/228 (32%), Gaps = 73/228 (32%)

Query: 72  RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGET 131
           RH  T  HLA +      ++ +L             A    +        +   N  G T
Sbjct: 77  RHGQTAAHLACEHRSPTCLRALL----DS------AAPGTLD--------LEARNYDGLT 118

Query: 132 ALFTAADKGHIEVVNELLKY-------STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
           AL  A +    E V  LL+          K G +        PL  A      ++VQ+LL
Sbjct: 119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRS--------PLIHAVENNSLSMVQLLL 170

Query: 185 DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 244
            H                         A VN    +          +G +ALH A+ +G 
Sbjct: 171 QHG------------------------ANVNA---QM--------YSGSSALHSASGRGL 195

Query: 245 VDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 290
           + +V+ L+    D  L    +    T L +A   +  ++++      A
Sbjct: 196 LPLVRTLVRSGADSSLK---NCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 69.8 bits (172), Expect = 1e-13
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 258 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADA---AIVMLPDKFGNTALHVATRKKRTE 314
           +A R D+ G T LH+AV   +   V  L+         + + +    T LH+A       
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 315 IVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELN 369
           +V  L++    +  AL R  +TA  +A        +      L    A    +L 
Sbjct: 61  VVRLLVTA-GASPMALDRHGQTAAHLA----CEHRSPTCLRALLDSAAPGTLDLE 110

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  165 bits (421), Expect = 6e-47
 Identities = 63/302 (20%), Positives = 112/302 (37%), Gaps = 46/302 (15%)

Query: 74  NDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETA 132
           +      A   GD   V + +  G D                       +N  N  G TA
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGAD-----------------------INYANVDGLTA 76

Query: 133 LFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 190
           L  A    ++++V  L++     G  + + +  G+ PLH AA  G+  I + L+     +
Sbjct: 77  LHQACIDDNVDMVKFLVEN----GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132

Query: 191 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKA 250
                    TPL  A       ++   +++ G        + + A     R    D  + 
Sbjct: 133 GAVNS-EGDTPLDIAEEEAMEELLQNEVNRQG-------VDIEAARKEEERIMLRDARQW 184

Query: 251 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 310
           L S      R   K G TALH+A      EV+KLL++A   +  + D  G T LH A   
Sbjct: 185 LNSGHINDVRH-AKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHW 242

Query: 311 KRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQ 370
            + E    +L     ++ A+ +  +TA D+A      +    +++   +   +  +E  +
Sbjct: 243 GKEEAC-RILVENLCDMEAVNKVGQTAFDVA----DEDILGYLEELQKKQNLLH-SEKRE 296

Query: 371 PR 372
            +
Sbjct: 297 KK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  124 bits (313), Expect = 7e-32
 Identities = 34/189 (17%), Positives = 72/189 (38%), Gaps = 11/189 (5%)

Query: 160 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 219
            +        +    G    ++  +             +    ++A + G T  V  LL 
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF--DDGAVFLAACSSGDTEEVLRLLE 61

Query: 220 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 279
           + G  +  +  +G  ALH A    +VD+VK L+     + +  D +G   LH A      
Sbjct: 62  R-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYL 119

Query: 280 EVVKLLLE--ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 337
           ++ + L+   A    V   +  G+T L +A  +   E++   ++    ++ A  ++ +  
Sbjct: 120 DIAEYLISQGAHVGAV---NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176

Query: 338 L--DIAEGL 344
           +  D  + L
Sbjct: 177 MLRDARQWL 185

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  120 bits (303), Expect = 2e-30
 Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 18/215 (8%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-- 186
            +         G    +   +    K     K   G      A   G    V  LL+   
Sbjct: 8   QKRNEQLKRWIGSETDLEPPVVKRKK--TKVKFDDG-AVFLAACSSGDTEEVLRLLERGA 64

Query: 187 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 246
           D + +   G    T L  A    +  +V  L+   G  +    + G   LH AA  G++D
Sbjct: 65  DINYANVDG---LTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLD 120

Query: 247 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 306
           + + L+S+   +    + +G T L +A +    E+++  +                A   
Sbjct: 121 IAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGV-------DIEAARKE 172

Query: 307 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
             R    +   + L+    N     +   TAL +A
Sbjct: 173 EERIMLRDAR-QWLNSGHINDVRHAKSGGTALHVA 206

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.3 bits (194), Expect = 4e-16
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 4/117 (3%)

Query: 225 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 284
           ++++ +  K         G    ++  + K  +   +           A      E V  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKK--TKVKFDDGAVFLAACSSGDTEEVLR 58

Query: 285 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           LLE  A I    +  G TALH A      ++V  L+     N+N    +    L  A
Sbjct: 59  LLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAA 113

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  166 bits (423), Expect = 1e-46
 Identities = 56/272 (20%), Positives = 90/272 (33%), Gaps = 50/272 (18%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
             LH A   G     +  + +G                         VN ++    T L 
Sbjct: 93  VPLHNACSYGHYEVTELLLKHGAC-----------------------VNAMDLWQFTPLH 129

Query: 135 TAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ 192
            AA K  +EV + LL +    G   T  N  G   + +A        +         L  
Sbjct: 130 EAASKNRVEVCSLLLSH----GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ- 184

Query: 193 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH---VDVVK 249
                       AA     A V + L+    +      + + ALH A    H     V +
Sbjct: 185 ------------AAREADLAKVKKTLAL-EIINFKQPQSHETALHCAVASLHPKRKQVAE 231

Query: 250 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR 309
            LL K   +    +K   T LH+A +    +V+++L +  A +    D  G TALH A  
Sbjct: 232 LLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAAL 289

Query: 310 KKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
               +    LLS   ++ + ++    TA  + 
Sbjct: 290 AGHLQTCRLLLSY-GSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  153 bits (390), Expect = 6e-42
 Identities = 71/312 (22%), Positives = 119/312 (38%), Gaps = 48/312 (15%)

Query: 47  ALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQIL--YGIDSQMVGN 104
           AL L++   +    G+ K            EL  AA+ G+   +  +L    ++      
Sbjct: 7   ALDLADPSAKAVLTGEYKK----------DELLEAARSGNEEKLMALLTPLNVNCHASDG 56

Query: 105 -----LSGAEFD--TEVAEI---RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTK 154
                L  A       + ++     + V+  ++ G   L  A   GH EV   LLK+   
Sbjct: 57  RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116

Query: 155 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTA 212
             +   +   F PLH AA +    +  +LL H  DP+L    G    + +  A T     
Sbjct: 117 --VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG---KSAVDMAPTPELRE 171

Query: 213 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM 272
            +                   ++L  AAR+  +  VK  L+ +    ++  +  +TALH 
Sbjct: 172 RLTYEFK-------------GHSLLQAAREADLAKVKKTLALEIINFKQ-PQSHETALHC 217

Query: 273 AVK---GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 329
           AV     +  +V +LLL   A +    +K   T LHVA  +   +++  L       +NA
Sbjct: 218 AVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKH-GAKMNA 275

Query: 330 LTRDHKTALDIA 341
           L    +TAL  A
Sbjct: 276 LDSLGQTALHRA 287

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  124 bits (315), Expect = 1e-31
 Identities = 54/258 (20%), Positives = 86/258 (33%), Gaps = 57/258 (22%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           T LH AA +  +      + +G D                          VN  G++A+ 
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGAD-----------------------PTLVNCHGKSAVD 162

Query: 135 TAADKGHIEVVNELLKYST-------------KEGLTR------KNRSGFDPLHIAAVQG 175
            A      E +    K  +             K+ L        + +S    LH A    
Sbjct: 163 MAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASL 222

Query: 176 HHA---IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG 232
           H     + ++LL    ++++       TPL  AA R H  V+  L    G  +    S G
Sbjct: 223 HPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVLHKH-GAKMNALDSLG 280

Query: 233 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 292
           + ALH AA  GH+   + LLS     +     +G TA  M       E V+ +L     +
Sbjct: 281 QTALHRAALAGHLQTCRLLLSYGSDPSII-SLQGFTAAQMGN-----EAVQQILSESTPM 334

Query: 293 VMLPDKFGNTALHVATRK 310
                   +  L  A++ 
Sbjct: 335 R---TSDVDYRLLEASKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 57.9 bits (141), Expect = 3e-09
 Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 38/141 (26%)

Query: 72  RHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGE 130
           +   T LH+AA+R     ++    +G                         +N ++ LG+
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVLHKHGAK-----------------------MNALDSLGQ 281

Query: 131 TALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 188
           TAL  AA  GH++    LL Y    G   +  +  GF    +      +  VQ +L    
Sbjct: 282 TALHRAALAGHLQTCRLLLSY----GSDPSIISLQGFTAAQMG-----NEAVQQILSEST 332

Query: 189 SLSQTTGPSNATPLVSAATRG 209
            +  +        L+ A+  G
Sbjct: 333 PMRTSD---VDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.7 bits (112), Expect = 1e-05
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 276 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 335
           G+  +    L +  A  V L  ++    L  A R    E +  LL+  + N +A      
Sbjct: 1   GEFGKSALDLADPSAKAV-LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKS 59

Query: 336 TALDIA 341
           T L +A
Sbjct: 60  TPLHLA 65

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  164 bits (417), Expect = 1e-46
 Identities = 68/308 (22%), Positives = 119/308 (38%), Gaps = 39/308 (12%)

Query: 80  LAAQRGDLGAVKQ-ILYGID------SQMVGNLSGAEFDTEVAEIR--SSVVNEVNELGE 130
           + +           +  G         Q   + S      +   IR  S+ +        
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 131 TALFTAADKGHIEVVNELLKY------STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
           + +  AA  GH   +  L+         T + ++        PLH A + GH + V++LL
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS--------PLHEACLGGHLSCVKILL 112

Query: 185 DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 244
            H   ++  T     TPL +A   G    VN LL   G  ++   S+  + +H AAR+GH
Sbjct: 113 KHGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQH-GASVQ-PESDLASPIHEAARRGH 169

Query: 245 VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 304
           V+ V +L++    +  +      T L++A + Q    VK LLE+ A +     K  ++ L
Sbjct: 170 VECVNSLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPL 226

Query: 305 HVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR 364
           H   R    E+   L+     +  A   + K  +++        E+   +  L R GA  
Sbjct: 227 HAVVRTASEELACLLMDF-GADTQAKNAEGKRPVELV-----PPESPLAQLFLEREGA-- 278

Query: 365 ANELNQPR 372
              L +P+
Sbjct: 279 --SLPKPK 284

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  161 bits (409), Expect = 2e-45
 Identities = 56/255 (21%), Positives = 93/255 (36%), Gaps = 34/255 (13%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           + +H AA  G   +++  I  G                         VN +     + L 
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWA-----------------------VNIITADHVSPLH 97

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 194
            A   GH+  V  LLK+  +  +         PL  A V G    V +LL H  S+   +
Sbjct: 98  EACLGGHLSCVKILLKHGAQ--VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155

Query: 195 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 254
               A+P+  AA RGH   VN L++  GG ++   S+    L+ A        VK LL  
Sbjct: 156 --DLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLES 212

Query: 255 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 314
              + +   K   + LH  V+  S E+  LL++  A      +  G   + +   +  + 
Sbjct: 213 GADVNQ--GKGQDSPLHAVVRTASEELACLLMDFGADT-QAKNAEGKRPVELVPPE--SP 267

Query: 315 IVTELLSLPDTNVNA 329
           +    L     ++  
Sbjct: 268 LAQLFLEREGASLPK 282

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  161 bits (411), Expect = 3e-46
 Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 10/222 (4%)

Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 179
               ++   + L  AA+ GH+++ + L++     G  +   +     PL  AA   H   
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQA----GANIDTCSEDQRTPLMEAAENNHLEA 59

Query: 180 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 239
           V+ L+     +        +T L  AA +GH  VV  LLS     +      G   + +A
Sbjct: 60  VKYLIKAGALVDPKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118

Query: 240 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 299
               HVD+VK LLSK   +  R D +    LH A      ++ ++LL A   +    +  
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEILLAAKCDLHA-VNIH 176

Query: 300 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           G++ LH+A R+ R + V   LS  D++V    ++ +T L  A
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  161 bits (409), Expect = 7e-46
 Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 45/255 (17%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           + LH AA+ G +      +  G +                       ++  +E   T L 
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGAN-----------------------IDTCSEDQRTPLM 49

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 194
            AA+  H+E V  L+K      +  K+  G   LH+AA +GH+ +VQ LL +        
Sbjct: 50  EAAENNHLEAVKYLIKAGAL--VDPKDAEGSTCLHLAAKKGHYEVVQYLLSN-------- 99

Query: 195 GPSN--------ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 246
           G  +         TP++ A    H  +V  LLSK G  + I  +     LH+AA  G VD
Sbjct: 100 GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVD 158

Query: 247 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 306
           + + LL+    L    +  G + LH+A +    + V L L  D+ + +  +K G T L  
Sbjct: 159 IAEILLAAKCDLHAV-NIHGDSPLHIAARENRYDCVVLFLSRDSDVTL-KNKEGETPLQC 216

Query: 307 ATRKKRTEIVTELLS 321
           A+   +     ++  
Sbjct: 217 ASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.1 bits (108), Expect = 3e-05
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 24/80 (30%)

Query: 73  HNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGET 131
           H D+ LH+AA+      V   +    D                       V   N+ GET
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSD-----------------------VTLKNKEGET 212

Query: 132 ALFTAADKGHIEVVNELLKY 151
            L  A+    +    ++ K 
Sbjct: 213 PLQCASLNSQVWSALQMSKA 232

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  164 bits (418), Expect = 9e-46
 Identities = 50/291 (17%), Positives = 93/291 (31%), Gaps = 28/291 (9%)

Query: 72  RHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFD-TEVAEIRSSVVNEVNELG 129
            H    +HLA        V   +    +   +      E D  EV EI     +  +  G
Sbjct: 82  WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEI---GSHVKHCKG 138

Query: 130 ETALFTAADKG--HIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD 187
           +TAL      G  ++E++  L++       T K+++   PL  A    +   + +++D  
Sbjct: 139 QTALHWCVGLGPEYLEMIKILVQLGAS--PTAKDKADETPLMRAMEFRNREALDLMMDTV 196

Query: 188 PSLSQ----TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 243
           PS S            + L  A       V    +   G  + +  +     L+ + R  
Sbjct: 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-GIDVNMEDNEHTVPLYLSVRAA 255

Query: 244 HVDVVKALLSKDPQLARR------------TDKKGQTALHMAVKGQSCEVVKLLLEADAA 291
            V + K LL K      +                    +  A      EV++LL E    
Sbjct: 256 MVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE 315

Query: 292 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 342
           + +     G        +K    +    L+ P   V   +R    +  +++
Sbjct: 316 V-VRSLNTGAGGAVKRKKKAAPAVKRMKLA-PSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  161 bits (411), Expect = 9e-45
 Identities = 48/277 (17%), Positives = 94/277 (33%), Gaps = 58/277 (20%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
            ++H+AA++G    V++ I  G+                            N  G TAL 
Sbjct: 22  EKIHVAARKGQTDEVRRLIETGVS-----------------------PTIQNRFGCTALH 58

Query: 135 TAADKGHIEVVNELLKY----STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 190
            A   G ++    L       S   G          P+H+A +     +V  L++     
Sbjct: 59  LACKFGCVDTAKYLASVGEVHSLWHGQK--------PIHLAVMANKTDLVVALVEG---- 106

Query: 191 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG--HVDVV 248
                     P           V             +    G+ ALH+    G  +++++
Sbjct: 107 ---AKERGQMPESLLNECDEREVN-------EIGSHVKHCKGQTALHWCVGLGPEYLEMI 156

Query: 249 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA----AIVMLPDKFGNTAL 304
           K L+        + DK  +T L  A++ ++ E + L+++         +   +K GN+ L
Sbjct: 157 KILVQLGASPTAK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL 215

Query: 305 HVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           H A      ++    + +   +VN    +H   L ++
Sbjct: 216 HWAILINWEDVAMRFVEM-GIDVNMEDNEHTVPLYLS 251

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  151 bits (383), Expect = 6e-41
 Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 30/228 (13%)

Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 179
             + ++     +  AA KG  + V  L++     G   T +NR G   LH+A   G    
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIET----GVSPTIQNRFGCTALHLACKFGCVDT 68

Query: 180 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 239
            + L       S   G     P+  A     T +V  L+         ++  G+      
Sbjct: 69  AKYLASVGEVHSLWHG---QKPIHLAVMANKTDLVVALVEG-------AKERGQMPESLL 118

Query: 240 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK--GQSCEVVKLLLEADAAIVMLPD 297
                 +V +               KGQTALH  V    +  E++K+L++  A+     D
Sbjct: 119 NECDEREVNEIGSHV-------KHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKD 170

Query: 298 KFGNTALHVATRKKRTEIVTELLSLPDT----NVNALTRDHKTALDIA 341
           K   T L  A   +  E +  ++    +     ++   +   + L  A
Sbjct: 171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWA 218

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  157 bits (399), Expect = 1e-44
 Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 14/227 (6%)

Query: 124 EVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQ 181
           ++ E G++ L  A       +  E+++    +   L  +N     PLH+A +     I +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 182 VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK-----DGGLLEISRSNGKN 234
            LL    DP L    G    TPL  A  +G  A V  L           +L+ +  NG  
Sbjct: 63  ALLGAGCDPELRDFRG---NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119

Query: 235 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM 294
            LH A+  G++ +V+ L+S    +  +    G+TALH+AV  Q+ ++V LLL+  A +  
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179

Query: 295 LPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           +    G +   +   +  T I  +L  L       +  + +      
Sbjct: 180 V-TYQGYSPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDEESYD 224

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  124 bits (315), Expect = 9e-33
 Identities = 44/246 (17%), Positives = 73/246 (29%), Gaps = 64/246 (26%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           T LHLA         +  +  G D                           +  G T L 
Sbjct: 47  TPLHLAVITNQPEIAEALLGAGCD-----------------------PELRDFRGNTPLH 83

Query: 135 TAADKGHIEVVNELLKY----STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 190
            A ++G +  V  L +          L   N +G   LH+A++ G+  IV++L+      
Sbjct: 84  LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG--- 140

Query: 191 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKA 250
                                A VN    ++         NG+ ALH A    + D+V  
Sbjct: 141 ---------------------ADVNA---QEP-------CNGRTALHLAVDLQNPDLVSL 169

Query: 251 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 310
           LL     + R    +G +   +     S  + + L +     +              T  
Sbjct: 170 LLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ-MLPESEDEESYDTES 227

Query: 311 KRTEIV 316
           + TE  
Sbjct: 228 EFTEFT 233

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  155 bits (393), Expect = 7e-44
 Identities = 42/238 (17%), Positives = 84/238 (35%), Gaps = 36/238 (15%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
             ++  A    +     ++           +   +            +  + ++ +T  +
Sbjct: 13  QVKVFRALYTFEPRTPDELY----------IEEGD------------IIYITDMSDTNWW 50

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQ 192
               KG   ++              +  S  +PLH AA +G+ + ++  LD+    +   
Sbjct: 51  KGTSKGRTGLIPSNYVA-------EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD 103

Query: 193 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 252
             G   +T L  A   GH  +V  L ++    L      G  ALH AA +G+ D+V+ LL
Sbjct: 104 KAG---STALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160

Query: 253 SKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 310
           +K  +   R + + + A  MA       ++K     DA    L +         +  +
Sbjct: 161 AKGARTDLR-NIEKKLAFDMATNAACASLLKKKQGTDAVRT-LSNAEDYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  148 bits (376), Expect = 1e-41
 Identities = 43/216 (19%), Positives = 76/216 (35%), Gaps = 13/216 (6%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD 187
           G+  +F A         +EL     +EG +                +G   ++      +
Sbjct: 12  GQVKVFRALYTFEPRTPDELYI---EEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 68

Query: 188 PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV 247
                    S   PL  AA RG+ + + E L      +      G  AL++A   GH D+
Sbjct: 69  ------QAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDI 121

Query: 248 VKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 307
           V+ L ++      + +K G TALH A      ++V+LLL   A    L +     A  +A
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMA 180

Query: 308 TRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 343
           T      ++ +     D        +     + ++ 
Sbjct: 181 TNAACASLLKKKQGT-DAVRTLSNAEDYLDDEDSDL 215

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  129 bits (326), Expect = 2e-34
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 9/181 (4%)

Query: 161 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 220
            + G   +  A           L   +  +   T  S+ T      ++G T ++      
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSD-TNWWKGTSKGRTGLIP----- 62

Query: 221 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 280
               +     +  N LH AA++G++  ++  L     +    DK G TAL+ A  G   +
Sbjct: 63  -SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKD 120

Query: 281 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 340
           +V++L       +   +K G+TALH A  K   +IV  LL+      +    + K A D+
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK-GARTDLRNIEKKLAFDM 179

Query: 341 A 341
           A
Sbjct: 180 A 180

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  103 bits (259), Expect = 3e-25
 Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 17/153 (11%)

Query: 199 ATPLVSAATRGHTAVVN----------ELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 248
           + P       G   V            + L  + G +                +G   ++
Sbjct: 2   SKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI 61

Query: 249 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 308
            +    +        +     LH A K  +   ++  L+     V   DK G+TAL+ A 
Sbjct: 62  PSNYVAE------QAESIDNPLHEAAKRGNLSWLRECLDNR-VGVNGLDKAGSTALYWAC 114

Query: 309 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
                +IV  L + P+  +N   +   TAL  A
Sbjct: 115 HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 99.6 bits (249), Expect = 4e-24
 Identities = 42/216 (19%), Positives = 69/216 (31%), Gaps = 69/216 (31%)

Query: 63  KKYVKQVTGRHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSV 121
                       D  LH AA+RG+L  +++ L   +                        
Sbjct: 62  PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG----------------------- 98

Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 179
           VN +++ G TAL+ A   GH ++V  L     +    L ++N+ G   LH AA +G+  I
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEMLFT---QPNIELNQQNKLGDTALHAAAWKGYADI 155

Query: 180 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 239
           VQ+LL                           A  +    ++           K A   A
Sbjct: 156 VQLLLAKG------------------------ARTDL---RN--------IEKKLAFDMA 180

Query: 240 ARQGHVDVVKALLSKDPQLARRT--DKKGQTALHMA 273
                  ++K     D   A RT  + +       +
Sbjct: 181 TNAACASLLKKKQGTD---AVRTLSNAEDYLDDEDS 213

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  158 bits (403), Expect = 1e-43
 Identities = 60/292 (20%), Positives = 99/292 (33%), Gaps = 32/292 (10%)

Query: 74  NDTELHLAAQRGDLGAVKQIL--YGIDSQMVGNLSGAEFDTEVAEIRSS---VVNEVNEL 128
           +   L  A+  G +   +  L  Y +     G  +G   +  + +   +   +  E    
Sbjct: 37  SQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNG---NDFLGDFNHTNLQIPTEPEPE 93

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 188
               L T A  G   +   + + S         R     LH  A        + L+ H+ 
Sbjct: 94  SPIKLHTEA-AGSYAITEPITRESVNI---IDPRHNRTVLHWIASNSSAEKSEDLIVHEA 149

Query: 189 SLSQTTGPS-NA------TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
                 G   NA      TPL+ A       +V  L+   G    I   + ++ALH AA 
Sbjct: 150 KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAA 208

Query: 242 QGHVDVVKALLSKDPQLAR--RTDKKGQTALHMAVKGQSCE---VVKLLLEADAAIVMLP 296
                ++  +L+           D+ G TAL +    +  +     KLL+E  A +    
Sbjct: 209 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 268

Query: 297 -------DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
                     G TALH A +     IV  L+    +N +    D KT + +A
Sbjct: 269 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  157 bits (398), Expect = 5e-43
 Identities = 58/267 (21%), Positives = 95/267 (35%), Gaps = 39/267 (14%)

Query: 72  RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGET 131
           RHN T LH  A        + ++     + +    GA+            VN ++    T
Sbjct: 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA--GAD------------VNAMDCDENT 168

Query: 132 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS 191
            L  A       +V  L+K       T  N+S    LH AA      ++  +L+      
Sbjct: 169 PLMLAVLARRRRLVAYLMKAGAD--PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226

Query: 192 QTTGPSN--ATPLVSAATRGHT---AVVNELLSK-------DGGLLEISRSNGKNALHFA 239
                     T L+  A        A    L+ K            +  +  G+ ALH+A
Sbjct: 227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286

Query: 240 ARQGHVDVVKALLS-----KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM 294
           A+  ++ +VK L+      KD Q     D+ G+T + +A +    EVV  L++  A++  
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDKQ-----DEDGKTPIMLAAQEGRIEVVMYLIQQGASV-E 340

Query: 295 LPDKFGNTALHVATRKKRTEIVTELLS 321
             D   +TA  +A       IV     
Sbjct: 341 AVDATDHTARQLAQANNHHNIVDIFDR 367

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 98.9 bits (247), Expect = 1e-22
 Identities = 41/200 (20%), Positives = 67/200 (33%), Gaps = 47/200 (23%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFT 135
           + LH AA   D G +   +  ++S  +             +I      E++  G TAL  
Sbjct: 201 SALHQAAANRDFGMMV-YM--LNSTKLK-----------GDI-----EELDRNGMTALMI 241

Query: 136 AADKGHIEVVN--ELL-------KYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 186
            A     + V   +LL        Y        +   G   LH AA   +  IV+ L+  
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301

Query: 187 ---DPSLSQTTGPSNA------TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH 237
              +          +       TP++ AA  G   VV  L+ + G  +E   +    A  
Sbjct: 302 KGSNK---------DKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQ 351

Query: 238 FAARQGHVDVVKALLSKDPQ 257
            A    H ++V       P+
Sbjct: 352 LAQANNHHNIVDIFDRCRPE 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  158 bits (402), Expect = 1e-43
 Identities = 55/316 (17%), Positives = 95/316 (30%), Gaps = 58/316 (18%)

Query: 60  AGKKKYVKQVTGRH--NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEI 117
              K+       +   ++    +AA  G   A+  +   + S                  
Sbjct: 76  RNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS-------DE--------- 119

Query: 118 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH 177
              +V  +      A   AA+ GH+ V+N L + +  E +       +    +AA  GH 
Sbjct: 120 ---IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL 176

Query: 178 AIVQVLLDHDPSL-SQTTGPSNATPLVSAATR-GHTAVVNELLSKD------------GG 223
            ++  L +  P+  +      N      AA   GH  V+N LL                G
Sbjct: 177 HVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYG 236

Query: 224 LLEI-----SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG-- 276
              +        N    +H A +  + D V  L++K          +G   L   ++   
Sbjct: 237 EKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC------LQGFYMLRNLIRRND 290

Query: 277 -QSCEVVKLLLEADA----AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV---- 327
               + ++ LL        A         N  L +A R         LLS+P        
Sbjct: 291 EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA 350

Query: 328 -NALTRDHKTALDIAE 342
            N    +    LD+  
Sbjct: 351 NNYYINETGGRLDLRA 366

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 96.2 bits (239), Expect = 1e-21
 Identities = 28/224 (12%), Positives = 57/224 (25%), Gaps = 13/224 (5%)

Query: 102 VGNLSGAEFDTEVAEIRSSVVNE-VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 160
           + N+   E D ++  I   +              +     + E ++  L           
Sbjct: 6   IHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLP--------GT 57

Query: 161 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 220
                    +     H+      L  D                          +  LL+ 
Sbjct: 58  KNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS 117

Query: 221 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL-ARRTDKKGQTALHMAVKGQSC 279
              ++++ ++    A   AA  GH+ V+  L    P         +   A  +A +    
Sbjct: 118 -DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL 176

Query: 280 EVVKLLLEADAAIV-MLPDKFGNTALHVATRKK-RTEIVTELLS 321
            V+  L E        +       A   A   +    ++  LL 
Sbjct: 177 HVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD 220

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 83.5 bits (206), Expect = 2e-17
 Identities = 34/236 (14%), Positives = 60/236 (25%), Gaps = 46/236 (19%)

Query: 72  RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGET 131
             N     LAA+ G L  + ++                  T            +      
Sbjct: 161 AENYHAFRLAAENGHLHVLNRLCE----------LAPTEAT----------AMIQAENYY 200

Query: 132 ALFTAA-DKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD----- 185
           A   AA  +GH  V+N LL       L       F+             V  L +     
Sbjct: 201 AFRWAAVGRGHHNVINFLLDCPVM--LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAF 258

Query: 186 -------HDPSLSQTTGPSNATPLVSAATRGHTAVVNEL-------LSKDGGLLEISRSN 231
                      ++++        L +   R    +++++         K          +
Sbjct: 259 KLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD 318

Query: 232 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 287
               L  A R G+      LLS    L            ++   G   ++  + LE
Sbjct: 319 ANELLRLALRLGNQGACALLLSIPSVL----ALTKANNYYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 76.9 bits (189), Expect = 3e-15
 Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 10/169 (5%)

Query: 175 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN 234
            +   + + L    ++ Q          +      H     + L  D     I       
Sbjct: 45  SYKEAIHIFLPGTKNMEQVRQ-------LLCLYYAHYNRNAKQLWSDAHKKGIKSEVICF 97

Query: 235 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM 294
                     +D +  LL+ D  +      +   A  +A +     V+  L E     +M
Sbjct: 98  VAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 156

Query: 295 -LPDKFGNTALHVATRKKRTEIVTELLSL-PDTNVNALTRDHKTALDIA 341
            +       A  +A       ++  L  L P      +  ++  A   A
Sbjct: 157 AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 66.5 bits (162), Expect = 7e-12
 Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 19/142 (13%)

Query: 45  APALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGN 104
                + ++ K  +  G    V +         L    +R D   +  I + +    +  
Sbjct: 249 NRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA 308

Query: 105 LSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSG 164
           L+                  +       L  A   G+      LL   +   LT+ N   
Sbjct: 309 LAP--------------TATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKAN--- 351

Query: 165 FDPLHIAAVQGHHAIVQVLLDH 186
               +I    G   +  V L+H
Sbjct: 352 --NYYINETGGRLDLRAVALEH 371

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  155 bits (395), Expect = 2e-43
 Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 25/242 (10%)

Query: 113 EVAEIRSSV-VNEVNELGETALFTAADKGHIEVVNELLKYS----TKEGLTRKNRSGFDP 167
           ++    SS    + +  G +A + A    ++ +V  LL         E           P
Sbjct: 14  QLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEF--------P 65

Query: 168 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 227
           LH AA      IV++LL      SQ       T L  A   G+   V   + K+  L+  
Sbjct: 66  LHQAATLEDTKIVKILLFSGLDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 124

Query: 228 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 287
            ++  K + + A     V +V   LS+ P           + +H+ +K    +++ LLL+
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLD 182

Query: 288 ADAAIVMLPDKFGNT-ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA----LDIAE 342
              +     +       + +A   K  E++  L    D N+   + + +       +IA+
Sbjct: 183 YMTSTNT-NNSLLFIPDIKLAIDNKDIEMLQALFKY-DINIY--SANLENVLLDDAEIAK 238

Query: 343 GL 344
            +
Sbjct: 239 MI 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  154 bits (392), Expect = 5e-43
 Identities = 39/273 (14%), Positives = 81/273 (29%), Gaps = 45/273 (16%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           +  + A    ++  V   +  G                          N +    E  L 
Sbjct: 33  SASYYAIADNNVRLVCTLLNAGAL-----------------------KNLLE--NEFPLH 67

Query: 135 TAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ 192
            AA     ++V  LL      G   ++ +  G   L+ A   G+   V++ +  +  L  
Sbjct: 68  QAATLEDTKIVKILLF----SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF 123

Query: 193 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 252
                  T    A      ++V+  LS+         +   + +H   + GHVD++  LL
Sbjct: 124 YGKTGWKTSFYHAVMLNDVSIVSYFLSE--IPSTFDLAILLSCIHITIKNGHVDMMILLL 181

Query: 253 SKDPQLARRTDKKGQT-ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 311
                     +       + +A+  +  E+++ L + D  I         +A        
Sbjct: 182 DYMTSTNTN-NSLLFIPDIKLAIDNKDIEMLQALFKYDINI--------YSANLENVLLD 232

Query: 312 RTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 344
             EI   ++        + +      +     L
Sbjct: 233 DAEIAKMIIEK-HVEYKSDSYTKDLDIVKNNKL 264

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  140 bits (356), Expect = 5e-38
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 11/207 (5%)

Query: 136 AADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG 195
             +    + +   L     +   + +  G    + A    +  +V  LL+     +    
Sbjct: 6   RINTWKSKQLKSFLS---SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE- 61

Query: 196 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 255
             N  PL  AAT   T +V  LL   G         G  AL++A   G++  VK  + K+
Sbjct: 62  --NEFPLHQAATLEDTKIVKILLFS-GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 118

Query: 256 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 315
            +L        +T+ + AV      +V   L    +          + +H+  +    ++
Sbjct: 119 WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDM 176

Query: 316 VTELLSLPDTNVNALTRDHKT-ALDIA 341
           +  LL    T+ N          + +A
Sbjct: 177 MILLLDY-MTSTNTNNSLLFIPDIKLA 202

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  136 bits (344), Expect = 3e-36
 Identities = 44/260 (16%), Positives = 84/260 (32%), Gaps = 40/260 (15%)

Query: 72  RHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGE 130
             N+  LH AA   D   VK  +  G+D                        ++ ++ G 
Sbjct: 60  LENEFPLHQAATLEDTKIVKILLFSGLD-----------------------DSQFDDKGN 96

Query: 131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFD-PLHIAAVQGHHAIVQVLLDHDPS 189
           TAL+ A D G+++ V   +K + +  L    ++G+    + A +    +IV   L   PS
Sbjct: 97  TALYYAVDSGNMQTVKLFVKKNWR--LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS 154

Query: 190 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGK-NALHFAARQGHVDVV 248
                     + +      GH  ++  LL         + S      +  A     ++++
Sbjct: 155 TFDLA--ILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDIEML 211

Query: 249 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 308
           +AL   D            +A    V     E+ K+++E             +  +    
Sbjct: 212 QALFKYDIN--------IYSANLENVLLDDAEIAKMIIEKHVEY-KSDSYTKDLDIVKNN 262

Query: 309 RKKRTEIVTELLSLPDTNVN 328
           +        + L L   N  
Sbjct: 263 KLDEIISKNKELRLMYVNCV 282

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 266 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 325
           G   L      +S ++   L   D       D  G++A + A       +V  LL+    
Sbjct: 1   GMD-LSRINTWKSKQLKSFLSSKD---TFKADVHGHSASYYAIADNNVRLVCTLLNA-GA 55

Query: 326 NVNALTRDHKTALDIA 341
             N    +++  L  A
Sbjct: 56  LKNL--LENEFPLHQA 69

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  153 bits (388), Expect = 1e-42
 Identities = 56/258 (21%), Positives = 95/258 (36%), Gaps = 37/258 (14%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEI----RSSVVNEVNELGET 131
           T L +A+  G            D+              V        +S+ N+ +  GET
Sbjct: 12  TPLMIASCSGGGLETGNSEEEEDA------------PAVISDFIYQGASLHNQTDRTGET 59

Query: 132 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS 191
           AL  AA     +    LL+ S       ++  G  PLH A       + Q+L+ +     
Sbjct: 60  ALHLAARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRN----- 112

Query: 192 QTTGPSN--------ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 243
                ++         TPL+ AA      ++ +L++     +      GK+ALH+AA   
Sbjct: 113 ---RATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVN 168

Query: 244 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA 303
           +VD    LL        + + + +T L +A +  S E  K+LL+  A    + D      
Sbjct: 169 NVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLP 226

Query: 304 LHVATRKKRTEIVTELLS 321
             +A  +   +IV  L  
Sbjct: 227 RDIAQERMHHDIVRLLDL 244

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  149 bits (378), Expect = 3e-41
 Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 24/236 (10%)

Query: 122 VNEVNELGETALFTAA-------------DKGHIEVVNELLKYSTKEG---LTRKNRSGF 165
           VN     G T L  A+             ++    V+++ +      G     + +R+G 
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ----GASLHNQTDRTGE 58

Query: 166 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 225
             LH+AA        + LL+     +        TPL +A +     V   L+      L
Sbjct: 59  TALHLAARYSRSDAAKRLLEASADANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDL 117

Query: 226 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 285
           +    +G   L  AAR     +++ L++    +    D  G++ALH A    + +   +L
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVL 176

Query: 286 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           L+  A   M  +    T L +A R+   E    LL     N +      +   DIA
Sbjct: 177 LKNGANKDM-QNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIA 230

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  146 bits (371), Expect = 1e-40
 Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 5/202 (2%)

Query: 120 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 179
           S+ N+ +  GETAL  AA     +    LL+ S       ++  G  PLH A       +
Sbjct: 16  SLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGV 73

Query: 180 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 239
            Q+L+ +  +          TPL+ AA      ++ +L++     +      GK+ALH+A
Sbjct: 74  FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWA 132

Query: 240 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 299
           A   +VD    LL        + + + +T L +A +  S E  K+LL+  A    + D  
Sbjct: 133 AAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLDHFANR-DITDHM 190

Query: 300 GNTALHVATRKKRTEIVTELLS 321
                 +A  +   +IV  L  
Sbjct: 191 DRLPRDIAQERMHHDIVRLLDE 212

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  137 bits (348), Expect = 2e-37
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 19/209 (9%)

Query: 140 GHIEVVNELLKYSTKEG---LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTT 194
               V+++ +      G     + +R+G   LH+AA        + LL+   D ++    
Sbjct: 2   DAPAVISDFIYQ----GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM 57

Query: 195 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 254
           G    TPL +A +     V   L+      L+    +G   L  AAR     +++ L++ 
Sbjct: 58  G---RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114

Query: 255 --DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR 312
             D       D  G++ALH A    + +   +LL+  A   M  +    T L +A R+  
Sbjct: 115 HADVN---AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLAAREGS 170

Query: 313 TEIVTELLSLPDTNVNALTRDHKTALDIA 341
            E   ++L     N +      +   DIA
Sbjct: 171 YETA-KVLLDHFANRDITDHMDRLPRDIA 198

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  134 bits (340), Expect = 2e-36
 Identities = 50/243 (20%), Positives = 84/243 (34%), Gaps = 40/243 (16%)

Query: 66  VKQVTGRHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNE 124
           +   T R  +T LHLAA+     A K+ +    D                        N 
Sbjct: 17  LHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-----------------------ANI 53

Query: 125 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
            + +G T L  A       V   L++    + L  +   G  PL +AA      +++ L+
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNRATD-LDARMHDGTTPLILAARLAVEGMLEDLI 112

Query: 185 DH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 242
           +   D +     G    + L  AA   +      LL   G   ++  +  +  L  AAR+
Sbjct: 113 NSHADVNAVDDLG---KSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAARE 168

Query: 243 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT 302
           G  +  K LL         TD   +    +A +    ++V+LL E +           + 
Sbjct: 169 GSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDEYNL--------VRSP 219

Query: 303 ALH 305
            LH
Sbjct: 220 QLH 222

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  144 bits (367), Expect = 2e-40
 Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 9/201 (4%)

Query: 126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 185
                  L  A  +   +V   L   + +  +   +  G  PL+IA       I + L+D
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQ--VDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 186 HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 245
               ++      + +P + A  +G T ++  +L      L      G NAL  AA +GH+
Sbjct: 61  RGADINLQNS-ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119

Query: 246 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC-----EVVKLLLEADAAIVMLPDKFG 300
           D VK LL    +     +  G TAL  AV  +       ++VKLL+E  A    + D  G
Sbjct: 120 DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSG 178

Query: 301 NTALHVATRKKRTEIVTELLS 321
            TA+  A +K  TEI   L  
Sbjct: 179 RTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  136 bits (344), Expect = 3e-37
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 8/187 (4%)

Query: 160 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 219
           K       L  A  +    + ++L D    + +       TPL  A       +   L+ 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT-EGNTPLNIAVHNNDIEIAKALID 60

Query: 220 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 279
           + G  + +  S   +   +A  QG  +++  +L        + ++ G  AL  A +    
Sbjct: 61  R-GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119

Query: 280 EVVKLLLEADAAIVMLPDKFGNTALHVA-----TRKKRTEIVTELLSLPDTNVNALTRDH 334
           + VKLLLE     +   + FG TAL  A       +   +IV  L+     + +      
Sbjct: 120 DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSIKDNSG 178

Query: 335 KTALDIA 341
           +TA+D A
Sbjct: 179 RTAMDYA 185

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  105 bits (265), Expect = 3e-26
 Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 47/194 (24%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           T L++A    D+   K  I  G D                       +N  N + ++   
Sbjct: 41  TPLNIAVHNNDIEIAKALIDRGAD-----------------------INLQNSISDSPYL 77

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 194
            A  +G  E++  +LK++T + L + NR G + L  AA +GH   V++LL+         
Sbjct: 78  YAGAQGRTEILAYMLKHATPD-LNKHNRYGGNALIPAAEKGHIDNVKLLLED-------- 128

Query: 195 GPSN--------ATPLVSAAT-----RGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 241
           G  +         T L+ A       + +  +V  L+   G    I  ++G+ A+ +A +
Sbjct: 129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSIKDNSGRTAMDYANQ 187

Query: 242 QGHVDVVKALLSKD 255
           +G+ ++ K L   +
Sbjct: 188 KGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 34/124 (27%)

Query: 72  RHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGE 130
           R+    L  AA++G +  VK  +  G                   +I     +  N+ G 
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDGR-----------------EDI-----DFQNDFGY 141

Query: 131 TALFTAA-----DKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVL 183
           TAL  A      ++ + ++V  L++     G   + K+ SG   +  A  +G+  I ++L
Sbjct: 142 TALIEAVGLREGNQLYQDIVKLLMEN----GADQSIKDNSGRTAMDYANQKGYTEISKIL 197

Query: 184 LDHD 187
             ++
Sbjct: 198 AQYN 201

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  125 bits (316), Expect = 5e-33
 Identities = 52/243 (21%), Positives = 85/243 (34%), Gaps = 48/243 (19%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLS-GAEFDTEVAEIRSSVVNEVNELGETAL 133
           ++ L LAA+  D+ A+ ++L             G E            V++   +GETAL
Sbjct: 4   ESPLLLAAKENDVQALSKLL----------KFEGCE------------VHQRGAMGETAL 41

Query: 134 FTAADKGHIEVVNELLKYS---TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH---- 186
             AA   ++E    L++ +     E +T +   G   LHIA +  +  +V+ LL      
Sbjct: 42  HIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV 101

Query: 187 --------DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 238
                                 PL  AA  G   +V  L+   G  +    S G   LH 
Sbjct: 102 SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-GADIRAQDSLGNTVLHI 160

Query: 239 AARQGHVDVVKA----LLSKD-----PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 289
              Q +          LLS D       L    + +G T   +A    +  + + L++  
Sbjct: 161 LILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220

Query: 290 AAI 292
             I
Sbjct: 221 KHI 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  113 bits (284), Expect = 1e-28
 Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 18/196 (9%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           +PL+ AA       +++LL  +G  +    + G+ ALH AA   +++    L+   P+L 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 260 RRT----DKKGQTALHMAVKGQSCEVVKLLLEADAAI------------VMLPDKFGNTA 303
                    +GQTALH+AV  Q+  +V+ LL   A++                  +G   
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124

Query: 304 LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA- 362
           L  A      EIV  L+     ++ A      T L I    P+   A ++ + L      
Sbjct: 125 LSFAACVGSEEIVRLLIEH-GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183

Query: 363 VRANELNQPRDELRKT 378
                L    +    T
Sbjct: 184 DHLKSLELVPNNQGLT 199

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 32/138 (23%)

Query: 58  DQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAE 116
                  Y       + +  L  AA  G    V+  I +G D                  
Sbjct: 105 ATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD------------------ 146

Query: 117 IRSSVVNEVNELGETALFTAADKGHIEVVNELLKY--------STKEGLTRKNRSGFDPL 168
                +   + LG T L     + +     ++             K      N  G  P 
Sbjct: 147 -----IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPF 201

Query: 169 HIAAVQGHHAIVQVLLDH 186
            +A V+G+  + Q L+  
Sbjct: 202 KLAGVEGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 64.9 bits (159), Expect = 5e-12
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 266 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS---- 321
            ++ L +A K    + +  LL+ +   V      G TALH+A      E    L+     
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 322 LPDTNVNALTRDHKTALDIA 341
           L    + +   + +TAL IA
Sbjct: 63  LVFEPMTSELYEGQTALHIA 82

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
              + L +A ++   + +++LL      V+      +TAL IA
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA 44

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  139 bits (352), Expect = 8e-38
 Identities = 44/269 (16%), Positives = 86/269 (31%), Gaps = 35/269 (13%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           +    + ++    GA++ ++   D             +      S +  +V    ET  +
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGH-----------SPSWVPSSYIAADVVSEYETPWW 50

Query: 135 TAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ 192
           TAA K   + +++LL     E   +   + +G   L   A  G    V++L +    L  
Sbjct: 51  TAARKADEQALSQLL-----EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105

Query: 193 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 252
                  T L  AA      VV  L+   G  +E+    G  AL  A            +
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKTTPKGNPM 164

Query: 253 SKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR 312
                  RR   +    +      +  EV +++ +            G    ++   K  
Sbjct: 165 QF----GRRIGLEKVINVLEGQVFEYAEVDEIVEK---------RGKGKDVEYLVRWKDG 211

Query: 313 TEIVTELLSLPDTNVNALTRDHKTALDIA 341
            +    +  +      A  +D++  L+ A
Sbjct: 212 GDCE-WVKGVHVAEDVA--KDYEDGLEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.1 bits (175), Expect = 5e-14
 Identities = 20/176 (11%), Positives = 43/176 (24%), Gaps = 41/176 (23%)

Query: 71  GRHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELG 129
            R   T LH+AA       V+  +  G D                       +   +E G
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGAD-----------------------IEVEDERG 144

Query: 130 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS 189
            TAL  A +          +++       R        +    V  +  + +++      
Sbjct: 145 LTALELAREILKTTPKGNPMQFGR-----RIGLEKVINVLEGQVFEYAEVDEIVEKRG-- 197

Query: 190 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 245
                             +        +        E    + ++ L +A  +  +
Sbjct: 198 -------KGKDVEYLVRWKDGGDCE-WVKGVHVA--EDVAKDYEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 20/90 (22%)

Query: 266 GQTALHMAVKGQS--------------CEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 311
           G+    +  +                            A +         T    A RK 
Sbjct: 1   GEVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKA 56

Query: 312 RTEIVTELLSLPDTNVNALTRDHKTALDIA 341
             + +++LL   D +V+A+  + +TAL   
Sbjct: 57  DEQALSQLLE--DRDVDAVDENGRTALLFV 84

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  136 bits (345), Expect = 9e-38
 Identities = 39/170 (22%), Positives = 63/170 (37%), Gaps = 4/170 (2%)

Query: 167 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 226
            +H  A QG    ++  L    +L         TPL+ A+  G    V  LL   G    
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPH 63

Query: 227 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 286
           I     ++AL  A+  G+ D+V  LL +D  +    D  G T L  AV+G   + V+ LL
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVEALL 122

Query: 287 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 336
              A  +      G T + +A      ++   + +     +         
Sbjct: 123 ARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  135 bits (342), Expect = 3e-37
 Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 9/176 (5%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-- 186
              ++   A +G ++ + E L+      + + +  GF PL  A+  G    V+ LL+   
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNL-VNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 187 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 246
           DP +         + L  A+T G+T +V  LL +    + I   NG   L +A R  HV 
Sbjct: 61  DPHILAKER---ESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVK 116

Query: 247 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT 302
            V+ALL++   L       G T + +AV     +V +++       +   +     
Sbjct: 117 CVEALLARGADLTTE-ADSGYTPMDLAVALGYRKVQQVIENHILK-LFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  123 bits (312), Expect = 4e-33
 Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 42/201 (20%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFT 135
             +H  A +G+L  +K+ L            G            ++VN+ +E G T L  
Sbjct: 4   LSIHQLAAQGELDQLKEHL----------RKGD-----------NLVNKPDERGFTPLIW 42

Query: 136 AADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT 193
           A+  G IE V  LL++    G       +     L +A+  G+  IV +LL+ D  +   
Sbjct: 43  ASAFGEIETVRFLLEW----GADPHILAKERESALSLASTGGYTDIVGLLLERDVDI--- 95

Query: 194 TGPSNA------TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV 247
               N       TPL+ A    H   V  LL++ G  L     +G   +  A   G+  V
Sbjct: 96  ----NIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALGYRKV 150

Query: 248 VKALLSKDPQLARRTDKKGQT 268
            + + +   +L +  +     
Sbjct: 151 QQVIENHILKLFQS-NLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  123 bits (311), Expect = 6e-33
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 7/146 (4%)

Query: 198 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--D 255
           ++  +   A +G    + E L K   L+      G   L +A+  G ++ V+ LL    D
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 256 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 315
           P       K+ ++AL +A  G   ++V LLLE D  I +  D  G T L  A R    + 
Sbjct: 62  PH---ILAKERESALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVRGNHVKC 117

Query: 316 VTELLSLPDTNVNALTRDHKTALDIA 341
           V  LL+    ++        T +D+A
Sbjct: 118 VEALLAR-GADLTTEADSGYTPMDLA 142

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  136 bits (346), Expect = 1e-37
 Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 26/206 (12%)

Query: 123 NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQV 182
           + +++ GE       +K   + ++ L  Y      T        PL +A + G    +  
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRT--------PLMVACMLGMENAIDK 53

Query: 183 LLDHDPSLSQTTGPSNA------TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL 236
           L+++   L               T L+ A       +  +LLSK G  +     +GK  L
Sbjct: 54  LVENFDKL-------EDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPL 105

Query: 237 HFAARQGHVDVVKALLSKDPQL-ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 295
            ++   G+ ++   LL     +  R  + +G+T L +A K    E+VK LLE  A I   
Sbjct: 106 MWSIIFGYSEMSYFLLEHGANVNDR--NLEGETPLIVASKYGRSEIVKKLLELGADI-SA 162

Query: 296 PDKFGNTALHVATRKKRTEIVTELLS 321
            D  G TA   A    R E++     
Sbjct: 163 RDLTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  119 bits (300), Expect = 3e-31
 Identities = 42/188 (22%), Positives = 69/188 (36%), Gaps = 26/188 (13%)

Query: 113 EVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHI 170
           +  +    + N  +    T L  A   G    +++L++        L  K+  G   L  
Sbjct: 22  QNLDF---LRNYRDSYNRTPLMVACMLGMENAIDKLVEN----FDKLEDKDIEGSTALIW 74

Query: 171 AAVQGHHAIVQVLLDHDPSLSQTTGPSNA------TPLVSAATRGHTAVVNELLSKDGGL 224
           A       I + LL    ++       N       TPL+ +   G++ +   LL   G  
Sbjct: 75  AVKNNRLGIAEKLLSKGSNV-------NTKDFSGKTPLMWSIIFGYSEMSYFLLEH-GAN 126

Query: 225 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQL-ARRTDKKGQTALHMAVKGQSCEVVK 283
           +      G+  L  A++ G  ++VK LL     + AR  D  G TA   A      EV+K
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR--DLTGLTAEASARIFGRQEVIK 184

Query: 284 LLLEADAA 291
           +  E   A
Sbjct: 185 IFTEVRRA 192

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  135 bits (342), Expect = 2e-37
 Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 5/167 (2%)

Query: 167 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 226
            +H  A QG    +   ++ +  ++ T      TPL+ AA  G  AVV  LL   G   +
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQN-GADPQ 63

Query: 227 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 286
           +     ++AL  A  +G+ D+VK LL     +    D  G T L  AV G   + VK+LL
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLL 122

Query: 287 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRD 333
           E+ A    +    G  ++ +A       +   + S     +    ++
Sbjct: 123 ESGADP-TIETDSGYNSMDLAVALGYRSVQQVIESH-LLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  132 bits (335), Expect = 2e-36
 Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 13/168 (7%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-- 186
              ++   A +G +  +   ++      +   +  GF PL  AA  G  A+V+ LL +  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENV--INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 187 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 246
           DP L         + L  A ++G+T +V  LL   G  +     NG   L +A    HV 
Sbjct: 61  DPQLLGKGR---ESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVK 116

Query: 247 VVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 292
            VK LL    DP +       G  ++ +AV      V +++      +
Sbjct: 117 CVKMLLESGADPTIE---TDSGYNSMDLAVALGYRSVQQVIESHLLKL 161

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  120 bits (303), Expect = 7e-32
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 8/147 (5%)

Query: 197 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK-- 254
           +N+  +   A +G    +   + +   ++  +   G   L +AA  G + VV+ LL    
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 255 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 314
           DPQL     K  ++AL +A      ++VK+LL+    +    D  G T L  A      +
Sbjct: 61  DPQLL---GKGRESALSLACSKGYTDIVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNHVK 116

Query: 315 IVTELLSLPDTNVNALTRDHKTALDIA 341
            V  LL     +    T     ++D+A
Sbjct: 117 CVKMLLES-GADPTIETDSGYNSMDLA 142

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  131 bits (331), Expect = 6e-35
 Identities = 49/255 (19%), Positives = 74/255 (29%), Gaps = 50/255 (19%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEG------LTRKNRSGFDPLHIAAV---QGHHAI 179
               LF+   +G  E +  LL+Y              +  +G   L  A +    G +A 
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 180 VQVLLDHDPSLSQTTGPSNA----------TPLVSAATRGHTAVVNELLS-------KDG 222
           +  LL  D          NA          + L  A  +     V  L+        +  
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 223 GLL-----EISRSNGKNALHFAARQGHVDVVKALLSKDPQLA--RRTDKKGQTALHM--- 272
           G             G+  L  AA     DVV  LL    Q A    TD  G T LH    
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

Query: 273 -------------AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 319
                         +     ++   L         + +  G T L +A ++ + EI   +
Sbjct: 182 IADNSPENSALVIHMYDGLLQMGARLCPTVQL-EEISNHQGLTPLKLAAKEGKIEIFRHI 240

Query: 320 LSLPDTNVNALTRDH 334
           L    +   A    H
Sbjct: 241 LQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  121 bits (305), Expect = 3e-31
 Identities = 48/274 (17%), Positives = 77/274 (28%), Gaps = 65/274 (23%)

Query: 74  NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETAL 133
           +   L     RG    +  +L              E+    ++  +         G+T L
Sbjct: 2   DRDRLFSVVSRGVPEELTGLL--------------EYLRWNSKYLTDSAYTEGSTGKTCL 47

Query: 134 FTAA---DKGHIEVVNELLKYSTKEG---------LTRKNRSGFDPLHIAAVQGHHAIVQ 181
             A      G    +  LL+     G          T +   G   LHIA  +     V+
Sbjct: 48  MKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVK 107

Query: 182 VLLDH------------DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL--LEI 227
           +L+++                  T       PL  AA      VV  LL        LE 
Sbjct: 108 LLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA 167

Query: 228 SRSNGKNALHF----------------AARQGHVDVVKALLSKDPQLARRTDKKGQTALH 271
           + S G   LH                     G + +   L           + +G T L 
Sbjct: 168 TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS-NHQGLTPLK 226

Query: 272 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH 305
           +A K    E+ + +L+ + +        G  A H
Sbjct: 227 LAAKEGKIEIFRHILQREFS--------GAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 62.5 bits (152), Expect = 5e-11
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 27/141 (19%)

Query: 58  DQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEI 117
                 +  +       +  L LAA       V  +L              E   + A +
Sbjct: 120 ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL--------------ENPHQPASL 165

Query: 118 RSS-----------VVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFD 166
            ++           V+   N    +AL      G +++   L      E     N  G  
Sbjct: 166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLE--EISNHQGLT 223

Query: 167 PLHIAAVQGHHAIVQVLLDHD 187
           PL +AA +G   I + +L  +
Sbjct: 224 PLKLAAKEGKIEIFRHILQRE 244

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  130 bits (330), Expect = 8e-35
 Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-- 186
           G+ +L         +  +E + +  +    + N      L  ++++G   +VQ ++    
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMR---VKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 187 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 246
           DPSL    G    T L +A   GHT +V  L+   G  +  + S+G   LH AA   +V 
Sbjct: 62  DPSLPNDEG---ITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ 117

Query: 247 VVKALLSKDPQLARRT--DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 304
           V K L+     +   T  D +        ++    +  + L      +  + +K    AL
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM-GIMNKGVIYAL 176

Query: 305 HVATRKKRTEIVTELLSLPDTNVNALTRDH--KTALDIAEG 343
                +       EL       +  + R+   +     A  
Sbjct: 177 WDYEPQN----DDELPMKEGDCMTIIHREDEDEIEWWWARL 213

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  126 bits (320), Expect = 2e-33
 Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 7/182 (3%)

Query: 163 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG 222
           +G   L               + H   +     P     L+ ++  G   +V  ++ +  
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLALLLDSSLEGEFDLVQRIIYE-V 60

Query: 223 GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 282
               +    G  ALH A   GH ++VK L+     +    D  G T LH A    + +V 
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVC 119

Query: 283 KLLLEADAAI--VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 340
           K L+E+ AA+  +   D            +  T+    L  +    +  + +    AL  
Sbjct: 120 KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV-QEKMGIMNKGVIYALWD 178

Query: 341 AE 342
            E
Sbjct: 179 YE 180

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  101 bits (253), Expect = 2e-24
 Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 41/209 (19%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFT 135
             L  ++  G+   V++I+     +        +             +  N+ G TAL  
Sbjct: 39  ALLLDSSLEGEFDLVQRII----YE------VDD------------PSLPNDEGITALHN 76

Query: 136 AADKGHIEVVNELLKY------STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--D 187
           A   GH E+V  L+++      +  +G T        PLH AA   +  + + L++    
Sbjct: 77  AVCAGHTEIVKFLVQFGVNVNAADSDGWT--------PLHCAASCNNVQVCKFLVESGAA 128

Query: 188 PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV 247
                 +    A         G+T     L       + I       AL     Q   ++
Sbjct: 129 VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV-QEKMGIMNKGVIYALWDYEPQNDDEL 187

Query: 248 VKALLSKDPQLARRTDKKGQTALHMAVKG 276
              +   D       + + +     A   
Sbjct: 188 --PMKEGDCMTIIHREDEDEIEWWWARLN 214

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 63.0 bits (154), Expect = 3e-11
 Identities = 9/79 (11%), Positives = 26/79 (32%), Gaps = 3/79 (3%)

Query: 263 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 322
           +  GQ +L    +    +     +     +    +      L  ++ +   ++V  ++  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 323 PDTNVNALTRDHKTALDIA 341
              + +    +  TAL  A
Sbjct: 60  -VDDPSLPNDEGITALHNA 77

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 2/46 (4%)

Query: 296 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           P+  G  +L    R    +  +E ++     V          L  +
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF-NPLPLALLLDS 44

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  129 bits (327), Expect = 3e-34
 Identities = 47/255 (18%), Positives = 74/255 (29%), Gaps = 49/255 (19%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEG------LTRKNRSGFDPLHIAAVQ---GHHAI 179
               LF    +G  + +  LL +             R+  +G   L  A +    G +  
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 180 VQVLLDHDPSLSQTTGPSNA----------TPLVSAATRGHTAVVNELLSK--------- 220
           + +LLD            N+          T L  A  R     V  L+ K         
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 221 ----DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA--RRTDKKGQTALHMAV 274
                          G+  L  AA      +V  L     + A  RR D +G T LH  V
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 275 KGQS---------CEVVKLLLEADAAI------VMLPDKFGNTALHVATRKKRTEIVTEL 319
                         ++  LLL   A +        L +  G + L +A +  +  I   +
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

Query: 320 LSLPDTNVNALTRDH 334
           +     +  A    H
Sbjct: 245 IRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 99.9 bits (249), Expect = 9e-24
 Identities = 44/267 (16%), Positives = 72/267 (26%), Gaps = 66/267 (24%)

Query: 74  NDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVN----EL 128
           N   L     RG    ++ +L + +                        + +        
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTH-------KKR------------LTDEEFREPST 45

Query: 129 GETALFTAA---DKGHIEVVNELLKYSTKEGLTR---------KNRSGFDPLHIAAVQGH 176
           G+T L  A      G  + +  LL  + K G  R             G   LHIA  +  
Sbjct: 46  GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105

Query: 177 HAIVQVLLDH-------------DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 223
              V++L++               P            PL  AA      +V+ L      
Sbjct: 106 KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165

Query: 224 LLEISR--SNGKNALHFAARQGH---------VDVVKALLSKD------PQLARRTDKKG 266
             ++ R  S G   LH                  +   LL K         L    +  G
Sbjct: 166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225

Query: 267 QTALHMAVKGQSCEVVKLLLEADAAIV 293
            + L MA K     + + ++  + A  
Sbjct: 226 LSPLMMAAKTGKIGIFQHIIRREIADA 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  130 bits (328), Expect = 3e-34
 Identities = 44/268 (16%), Positives = 82/268 (30%), Gaps = 57/268 (21%)

Query: 123 NEVNELGETALFTAADKGHIEVVNELLKYSTKEG------LTRKNRSGFDPLHIAAV--- 173
                    ++F A  + + + +  LL +  +          +   +G   L  A +   
Sbjct: 7   KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH 66

Query: 174 QGHHAIVQVLLDHDPSLSQTTGPSNA----------TPLVSAATRGHTAVVNELLSK--- 220
            G +  + +LLD            NA          T L  A  R +  +V  L+     
Sbjct: 67  NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD 126

Query: 221 -----DGGLLEISRSN-----GKNALHFAARQGHVDVVKALLSKDPQLA--RRTDKKGQT 268
                +G   + ++       G+  L  AA    + +VK LL    Q A     D  G T
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186

Query: 269 ALHMAVKGQ---------SCEVVKLLLEADA------AIVMLPDKFGNTALHVATRKKRT 313
            LH  V+              +   +L   A       +  + ++ G T L +A    + 
Sbjct: 187 VLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI 246

Query: 314 EIVTELLSLPDTNVNALTRDHKTALDIA 341
            ++  +L   + +              A
Sbjct: 247 GVLAYILQR-EIHEP-------ECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  127 bits (322), Expect = 2e-33
 Identities = 47/285 (16%), Positives = 80/285 (28%), Gaps = 72/285 (25%)

Query: 72  RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVN----E 127
            ++   +  A  + +   ++ +L                     +     + +      E
Sbjct: 11  LYDRRSIFDAVAQSNCQELESLL------------------PFLQRSKKRLTDSEFKDPE 52

Query: 128 LGETALFTA---ADKGHIEVVNELL---------KYSTKEGLTRKNRSGFDPLHIAAVQG 175
            G+T L  A      G  + +  LL         K       T     G   LHIA  + 
Sbjct: 53  TGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR 112

Query: 176 HHAIVQVLLDH-------------DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG 222
           +  +V +L+++               +  +        PL  AA     A+V  LL    
Sbjct: 113 NMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172

Query: 223 GLLEISR--SNGKNALHFAARQGHVDVVK---------------ALLSKDPQLARRTDKK 265
              +IS   S G   LH         V                 A L    +L   T++K
Sbjct: 173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK 232

Query: 266 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 310
           G T L +A       V+  +L+ +               H A   
Sbjct: 233 GLTPLALAASSGKIGVLAYILQREI--------HEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 90.2 bits (224), Expect = 2e-20
 Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 36/189 (19%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFD--TEVAEIRSSVVNEVNELGETAL 133
           T LH+A +R ++  V      +++       GA+          + +        GE  L
Sbjct: 103 TALHIAIERRNMTLVT---LLVEN-------GADVQAAANGDFFKKTKGRPGFYFGELPL 152

Query: 134 FTAADKGHIEVVNELLKYSTKE-GLTRKNRSGFDPLHIAAVQGHHAIVQV---------L 183
             AA    + +V  LL+ S +   ++ ++  G   LH       + +            +
Sbjct: 153 SLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEI 212

Query: 184 LDHDPSLSQTTGPSNA------TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH 237
           L     L  T            TPL  AA+ G   V+  +L ++         +     H
Sbjct: 213 LILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE--------IHEPECRH 264

Query: 238 FAARQGHVD 246
            AA   H  
Sbjct: 265 AAAHHHHHH 273

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  124 bits (315), Expect = 1e-33
 Identities = 46/201 (22%), Positives = 75/201 (37%), Gaps = 47/201 (23%)

Query: 125 VNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQV 182
           + E     L +AA +G +E +  LL+        +  +N  G   L +    G+  I + 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQN----NVNVNAQNGFGRTALQVMK-LGNPEIARR 55

Query: 183 LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 242
           LL                           A  +    KD          G   +H AAR 
Sbjct: 56  LLLRG------------------------ANPDL---KD--------RTGFAVIHDAARA 80

Query: 243 GHVDVVKALLSKDPQLAR--RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG 300
           G +D ++ LL      A     D +G   LH+A K     VV+ L++  A+ V   +  G
Sbjct: 81  GFLDTLQTLLEFQ---ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137

Query: 301 NTALHVATRKKRTEIVTELLS 321
           +TA  +A    R E+V+ + +
Sbjct: 138 DTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  107 bits (270), Expect = 2e-27
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 4/142 (2%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
             L SAA RG    +  LL      +      G+ AL      G+ ++ + LL +     
Sbjct: 7   NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD 64

Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 319
            + D+ G   +H A +    + ++ LLE  A +  + D  GN  LH+A ++    +V  L
Sbjct: 65  LK-DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFL 122

Query: 320 LSLPDTNVNALTRDHKTALDIA 341
           +    +NV        TA D+A
Sbjct: 123 VKHTASNVGHRNHKGDTACDLA 144

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  125 bits (316), Expect = 1e-33
 Identities = 43/206 (20%), Positives = 60/206 (29%), Gaps = 42/206 (20%)

Query: 116 EIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG 175
           E+   + +     G          GH          +              P   AA + 
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD-----VVSEYETPWWTAARKA 55

Query: 176 HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA 235
               +  LL                             V+     D         NG+ A
Sbjct: 56  DEQALSQLL-------------------------EDRDVDA---VD--------ENGRTA 79

Query: 236 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 295
           L F A  G    V+ L      L  R  + G TALHMA      EVV+ L+E  A I  +
Sbjct: 80  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EV 138

Query: 296 PDKFGNTALHVATRKKRTEIVTELLS 321
            D+ G TAL +A    +T      + 
Sbjct: 139 EDERGLTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  109 bits (274), Expect = 1e-27
 Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 9/145 (6%)

Query: 198 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK-DP 256
            A   +     GH+              ++  S  +     AAR+     +  LL   D 
Sbjct: 14  GAMEYLIEWKDGHSPSWVPSSYIAA---DVV-SEYETPWWTAARKADEQALSQLLEDRDV 69

Query: 257 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 316
                 D+ G+TAL       S + V+LL EA A +     + G TALH+A    R E+V
Sbjct: 70  D---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 126

Query: 317 TELLSLPDTNVNALTRDHKTALDIA 341
             L+ L   ++        TAL++A
Sbjct: 127 EALVEL-GADIEVEDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  108 bits (273), Expect = 1e-27
 Identities = 39/221 (17%), Positives = 69/221 (31%), Gaps = 71/221 (32%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFT 135
            E  +  + G                          +      S +  +V    ET  +T
Sbjct: 16  MEYLIEWKDGH-------------------------SPSWVPSSYIAADVVSEYETPWWT 50

Query: 136 AADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT 193
           AA K   + +++LL     E   +   + +G   L   A  G    V++L +        
Sbjct: 51  AARKADEQALSQLL-----EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG------ 99

Query: 194 TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 253
                             A ++    +D          G  ALH AA     +VV+AL+ 
Sbjct: 100 ------------------ADLDH---RD-------MRGGLTALHMAAGYVRPEVVEALVE 131

Query: 254 K--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 292
              D ++    D++G TAL +A +          ++    I
Sbjct: 132 LGADIEVE---DERGLTALELAREILKTTPKGNPMQFGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 90.2 bits (225), Expect = 4e-21
 Identities = 39/190 (20%), Positives = 58/190 (30%), Gaps = 61/190 (32%)

Query: 74  NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETAL 133
            +T    AA++ D  A+ Q+L   D                       V+ V+E G TAL
Sbjct: 44  YETPWWTAARKADEQALSQLLEDRD-----------------------VDAVDENGRTAL 80

Query: 134 FTAADKGHIEVVNELLKY-------STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 186
              A  G  + V  L +          + GLT         LH+AA      +V+ L++ 
Sbjct: 81  LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT--------ALHMAAGYVRPEVVEALVEL 132

Query: 187 --DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 244
             D  +    G    T L  A     T                        + F  R G 
Sbjct: 133 GADIEVEDERG---LTALELAREILKTTPK-GNP-----------------MQFGRRIGL 171

Query: 245 VDVVKALLSK 254
             V+  L  +
Sbjct: 172 EKVINVLEGQ 181

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  124 bits (314), Expect = 2e-33
 Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 11/185 (5%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 188
               +FT   +G+   V   L  +T+  L + +  GF PLH A  +G  A+V++L+    
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLD-NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 189 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 248
            ++      + TPL  AA+ GH  +V +LL      +     +G   LH+A   G   V 
Sbjct: 64  RINVMNR-GDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVA 121

Query: 249 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 308
           + L++    ++   +K G+  +  A       + +   +    +                
Sbjct: 122 EDLVANGALVSIC-NKYGEMPVDKAKAPLRELLRERAEKMGQNL-------NRIPYKDTF 173

Query: 309 RKKRT 313
            K  T
Sbjct: 174 WKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  119 bits (300), Expect = 2e-31
 Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 11/165 (6%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
             + +    G+   V   L      L     +G + LH+A R+G   VV+ L+ +    A
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG---A 63

Query: 260 R--RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 317
           R    ++   T LH+A      ++V+ LL+  A I    ++ GN  LH A    + ++  
Sbjct: 64  RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAE 122

Query: 318 ELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 362
           +L++     V+   +  +  +D A     +     +++   + G 
Sbjct: 123 DLVAN-GALVSICNKYGEMPVDKA----KAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 99.4 bits (249), Expect = 2e-24
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 231 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 290
              + +    R+G+   V+  L        + D  G + LH A +     VV++L+   A
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 291 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
            I  + ++  +T LH+A      +IV +LL     ++NA+       L  A
Sbjct: 64  RI-NVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYA 112

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 79.4 bits (197), Expect = 2e-17
 Identities = 31/140 (22%), Positives = 46/140 (32%), Gaps = 37/140 (26%)

Query: 75  DTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETAL 133
           DT LHLAA  G    V++ + Y  D                       +N VNE G   L
Sbjct: 73  DTPLHLAASHGHRDIVQKLLQYKAD-----------------------INAVNEHGNVPL 109

Query: 134 FTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS 191
             A   G  +V  +L+      G  ++  N+ G  P+  A       + +       +L 
Sbjct: 110 HYACFWGQDQVAEDLVAN----GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL- 164

Query: 192 QTTGPSNATPLVSAATRGHT 211
                 N  P      +G T
Sbjct: 165 ------NRIPYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 70.5 bits (174), Expect = 2e-14
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 263 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 322
             +    +    +  +   V+L L+     +   D  G + LH A R+ R+ +V  L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 323 PDTNVNALTRDHKTALDIA 341
               +N + R   T L +A
Sbjct: 62  -GARINVMNRGDDTPLHLA 79

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 14/105 (13%), Positives = 22/105 (20%), Gaps = 32/105 (30%)

Query: 73  HNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGET 131
           H +  LH A   G     +  +  G                         V+  N+ GE 
Sbjct: 104 HGNVPLHYACFWGQDQVAEDLVANGAL-----------------------VSICNKYGEM 140

Query: 132 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH 176
            +  A       +     K                P      +G 
Sbjct: 141 PVDKAKAPLRELLRERAEKMGQNLNRI--------PYKDTFWKGT 177

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  123 bits (311), Expect = 5e-33
 Identities = 53/197 (26%), Positives = 77/197 (39%), Gaps = 47/197 (23%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 186
               L  AA  G  + V  L+      G  +  ++ SG+ PLH+AA  GH  IV+VLL +
Sbjct: 14  LGKKLLEAARAGRDDEVRILMAN----GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 187 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 246
                                    A VN     D          G   L  AA  GH++
Sbjct: 70  G------------------------ADVNA---VD--------HAGMTPLRLAALFGHLE 94

Query: 247 VVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 304
           +V+ LL    D       D +G T LH+A      E+V++LL+  A +    DKFG TA 
Sbjct: 95  IVEVLLKNGADVN---ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAF 150

Query: 305 HVATRKKRTEIVTELLS 321
            ++      ++   L  
Sbjct: 151 DISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  110 bits (278), Expect = 2e-28
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
             L+ AA  G    V  L++  G  +    ++G   LH AA  GH+++V+ LL     + 
Sbjct: 16  KKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74

Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 319
              D  G T L +A      E+V++LL+  A +    D  G+T LH+A      EIV  L
Sbjct: 75  AV-DHAGMTPLRLAALFGHLEIVEVLLKNGADVNA-NDMEGHTPLHLAAMFGHLEIVEVL 132

Query: 320 LSLPDTNVNALTRDHKTALDIA 341
           L     +VNA  +  KTA DI+
Sbjct: 133 LKN-GADVNAQDKFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  110 bits (277), Expect = 2e-28
 Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 32/183 (17%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
            +L  AA+ G    V+  +  G D                       VN  +  G T L 
Sbjct: 16  KKLLEAARAGRDDEVRILMANGAD-----------------------VNAEDASGWTPLH 52

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQ 192
            AA  GH+E+V  LLK      +   + +G  PL +AA+ GH  IV+VLL +  D + + 
Sbjct: 53  LAAFNGHLEIVEVLLKNGAD--VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110

Query: 193 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 252
             G    TPL  AA  GH  +V  LL   G  +      GK A   +   G+ D+ + L 
Sbjct: 111 MEG---HTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

Query: 253 SKD 255
             +
Sbjct: 167 KLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 93.2 bits (233), Expect = 2e-22
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 230 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 289
           S+    L  AAR G  D V+ L++    +    D  G T LH+A      E+V++LL+  
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 290 AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           A +    D  G T L +A      EIV  LL     +VNA   +  T L +A
Sbjct: 71  ADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLA 120

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 61.2 bits (150), Expect = 3e-11
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 263 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 322
                  L  A +    + V++L+   A +    D  G T LH+A      EIV  LL  
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 323 PDTNVNALTRDHKTALDIA 341
              +VNA+     T L +A
Sbjct: 70  -GADVNAVDHAGMTPLRLA 87

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  122 bits (309), Expect = 6e-33
 Identities = 45/196 (22%), Positives = 69/196 (35%), Gaps = 46/196 (23%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 186
               L  AA +G ++ V  LL    +E       NR G   L +    G  AI   LL  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLL---HRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ 57

Query: 187 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 246
                                    A  N    +D        ++G + +H AAR G +D
Sbjct: 58  G------------------------ASPNV---QD--------TSGTSPVHDAARTGFLD 82

Query: 247 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE-ADAAIVMLPDKFGNTALH 305
            +K L+     +    D  G   +H+AV+     VV  L   +D   +   D  G T L 
Sbjct: 83  TLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAESD---LHRRDARGLTPLE 138

Query: 306 VATRKKRTEIVTELLS 321
           +A ++   ++V  L  
Sbjct: 139 LALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  115 bits (291), Expect = 2e-30
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 9/144 (6%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 257
             L  AA RG    V  LL ++    +     GK AL      G   +   LL +   P 
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 62

Query: 258 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 317
           +    D  G + +H A +    + +K+L+E  A +  +PD  G   +H+A ++  T +V+
Sbjct: 63  VQ---DTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVS 118

Query: 318 ELLSLPDTNVNALTRDHKTALDIA 341
            L +  +++++       T L++A
Sbjct: 119 FLAA--ESDLHRRDARGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  108 bits (273), Expect = 6e-28
 Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 35/182 (19%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFT 135
             L  AA RGD+  V+++L         +                  + +N  G+TAL  
Sbjct: 4   DRLSGAAARGDVQEVRRLL---------HRELVH------------PDALNRFGKTALQV 42

Query: 136 AADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLS 191
               G   +  ELLK     G     ++ SG  P+H AA  G    ++VL++H  D ++ 
Sbjct: 43  MM-FGSTAIALELLKQ----GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP 97

Query: 192 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 251
             TG   A P+  A   GHTAVV+ L +     L    + G   L  A ++G  D+V  L
Sbjct: 98  DGTG---ALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 252 LS 253
             
Sbjct: 153 QG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 69.7 bits (172), Expect = 2e-14
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 27/112 (24%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           + +H AA+ G L  +K  + +G D                       VN  +  G   + 
Sbjct: 70  SPVHDAARTGFLDTLKVLVEHGAD-----------------------VNVPDGTGALPIH 106

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 186
            A  +GH  VV+ L   S      R++  G  PL +A  +G   +V +L  H
Sbjct: 107 LAVQEGHTAVVSFLAAESDLH---RRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 265 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPD 324
           +    L  A      + V+ LL  +       ++FG TAL V      T I  ELL    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQ-G 58

Query: 325 TNVNALTRDHKTALDIA 341
            + N       + +  A
Sbjct: 59  ASPNVQDTSGTSPVHDA 75

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  122 bits (309), Expect = 4e-32
 Identities = 39/212 (18%), Positives = 67/212 (31%), Gaps = 27/212 (12%)

Query: 122 VNEVNEL---GETALFTAADKGHIEVVNELLKY------STKEGLTRKNRSGFDPLHIAA 172
             +           L  AA  G +EVV + +K         +EG+T         LH A 
Sbjct: 11  PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGIT--------ALHNAI 62

Query: 173 VQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS 230
              +++IV  L+    + +   + G    TPL  AA+   T +   L+     +   + S
Sbjct: 63  CGANYSIVDFLITAGANVNSPDSHG---WTPLHCAASCNDTVICMALVQHGAAIFATTLS 119

Query: 231 NGKNALHFAA--RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 288
           +G  A       R+G+ D    L   +  +    +     AL         + +      
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEFG-DELSFREGE 177

Query: 289 DAAIVMLPDKFGNTALHVATRKKRTEIVTELL 320
               V+  D    T    A    +   V    
Sbjct: 178 S-VTVLRRDGPEETDWWWAALHGQEGYVPRNY 208

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 33/211 (15%), Positives = 58/211 (27%), Gaps = 54/211 (25%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           T LH A    +   V   I  G +                       VN  +  G T L 
Sbjct: 56  TALHNAICGANYSIVDFLITAGAN-----------------------VNSPDSHGWTPLH 92

Query: 135 TAADKGHIEVVNELLKY-------STKEGLTRKNRSGFDPLHIAAV--QGHHAIVQVLLD 185
            AA      +   L+++       +  +G T                 +G+      L D
Sbjct: 93  CAASCNDTVICMALVQHGAAIFATTLSDGAT--------AFEKCDPYREGYADCATYLAD 144

Query: 186 H--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR--SNGKNALHFAAR 241
                 L  +        L   +        +EL  ++G  + + R     +    +AA 
Sbjct: 145 VEQSMGLMNSGA---VYALWDYSAEFG----DELSFREGESVTVLRRDGPEETDWWWAAL 197

Query: 242 QGHVDVV-KALLSKDPQLARRTDKKGQTALH 271
            G    V +      P++  +   K +   H
Sbjct: 198 HGQEGYVPRNYFGLFPRVKPQ-RSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 64.2 bits (157), Expect = 8e-12
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 248 VKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH 305
           ++++L K   P+ ARR        L  A      EVV+  ++        P++ G TALH
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-PNEEGITALH 59

Query: 306 VATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
            A       IV  L++    NVN+      T L  A
Sbjct: 60  NAICGANYSIVDFLITA-GANVNSPDSHGWTPLHCA 94

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  119 bits (300), Expect = 1e-31
 Identities = 45/194 (23%), Positives = 68/194 (35%), Gaps = 45/194 (23%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 188
               L  AA  G  + V  L+           +  G  PLH+AA  GH +  +VLL    
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPF---TTDWLGTSPLHLAAQYGHFSTTEVLLRAG- 57

Query: 189 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 248
                                     +    +            +  LH AA +GH ++V
Sbjct: 58  -----------------------VSRDA---RT--------KVDRTPLHMAASEGHANIV 83

Query: 249 KALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 306
           + LL    D       D    TALH A +    EVV+LL++  A +     KF  TA  +
Sbjct: 84  EVLLKHGADVN---AKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDI 139

Query: 307 ATRKKRTEIVTELL 320
           +      ++  E+L
Sbjct: 140 SIDNGNEDLA-EIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  109 bits (275), Expect = 3e-28
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 17/148 (11%)

Query: 200 TPLVSAATRGHTAVVNELLS------KDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 253
             L+ AA  G    V  L++       D          G + LH AA+ GH    + LL 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTD--------WLGTSPLHLAAQYGHFSTTEVLLR 55

Query: 254 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT 313
                  R  K  +T LHMA       +V++LL+  A +    D    TALH AT     
Sbjct: 56  AGVSRDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQ 113

Query: 314 EIVTELLSLPDTNVNALTRDHKTALDIA 341
           E+V  L+     +V+  ++  KTA DI+
Sbjct: 114 EVVELLIKY-GADVHTQSKFCKTAFDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  100 bits (253), Expect = 3e-25
 Identities = 46/213 (21%), Positives = 71/213 (33%), Gaps = 67/213 (31%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
            +L  AA+ G    V+  +  G                             + LG + L 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAP-----------------------FTT-DWLGTSPLH 39

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 194
            AA  GH      LL+         + +    PLH+AA +GH  IV+VLL H        
Sbjct: 40  LAAQYGHFSTTEVLLRAGVS--RDARTKVDRTPLHMAASEGHANIVEVLLKHG------- 90

Query: 195 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 254
                            A VN    KD             ALH+A    H +VV+ L+  
Sbjct: 91  -----------------ADVNA---KD--------MLKMTALHWATEHNHQEVVELLIKY 122

Query: 255 --DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 285
             D        K  +TA  +++   + ++ ++L
Sbjct: 123 GADVH---TQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 94.8 bits (237), Expect = 4e-23
 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 231 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 290
           +    L  AAR G  D V+ L++        TD  G + LH+A +       ++LL A  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 291 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           +      K   T LH+A  +    IV  LL     +VNA      TAL  A
Sbjct: 59  SR-DARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWA 107

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  115 bits (290), Expect = 4e-30
 Identities = 48/199 (24%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 125 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
            N   +  L  AA  G +E V +L    +             PLH AA     ++V+ LL
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 185 DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 244
            H                         A V+    KD          G   LH A   GH
Sbjct: 63  QHG------------------------ADVHA---KD--------KGGLVPLHNACSYGH 87

Query: 245 VDVVKALLSKDPQLA--RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT 302
            +V + L+      A     D    T LH A      E+ KLLL+  A      ++ GNT
Sbjct: 88  YEVAELLVKHG---AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNT 143

Query: 303 ALHVATRKKRTEIVTELLS 321
            L +  +   T+I   L  
Sbjct: 144 PLDLV-KDGDTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  110 bits (278), Expect = 2e-28
 Identities = 49/206 (23%), Positives = 68/206 (33%), Gaps = 46/206 (22%)

Query: 160 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 219
            N      L  AA  G    V+ L                           +    +   
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTV-----------------------QSVNCRD--- 37

Query: 220 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQ 277
            +G             LHFAA    V VV+ LL    D       DK G   LH A    
Sbjct: 38  IEG--------RQSTPLHFAAGYNRVSVVEYLLQHGADVH---AKDKGGLVPLHNACSYG 86

Query: 278 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 337
             EV +LL++  A + +  D +  T LH A  K + EI   LL     +     RD  T 
Sbjct: 87  HYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTP 144

Query: 338 LDIAEGLPSSEEASEIKDCLARCGAV 363
           LD+       +  ++I+D L    A+
Sbjct: 145 LDLV-----KDGDTDIQDLLRGDAAL 165

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 78.2 bits (194), Expect = 3e-17
 Identities = 40/194 (20%), Positives = 66/194 (34%), Gaps = 54/194 (27%)

Query: 75  DTELHLAAQRGDLGAVKQIL--YGIDSQMVGNLSG------AEFD-TEVAEIRSSV---V 122
           D +L  AA+ GD+  VK++     ++ + +           A ++   V E        V
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68

Query: 123 NEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIV 180
           +  ++ G   L  A   GH EV   L+K+    G  +   +   F PLH AA +G + I 
Sbjct: 69  HAKDKGGLVPLHNACSYGHYEVAELLVKH----GAVVNVADLWKFTPLHEAAAKGKYEIC 124

Query: 181 QVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 240
           ++LL H                         A   +   K+         +G   L    
Sbjct: 125 KLLLQHG------------------------ADPTK---KN--------RDGNTPLDLVK 149

Query: 241 RQGHVDVVKALLSK 254
             G  D+   L   
Sbjct: 150 D-GDTDIQDLLRGD 162

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  116 bits (291), Expect = 1e-29
 Identities = 60/251 (23%), Positives = 97/251 (38%), Gaps = 36/251 (14%)

Query: 74  NDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETA 132
           N    +LA         ++ +                                ++   TA
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSL-----------------------ATRTDQDSRTA 43

Query: 133 LFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 190
           L  A   GH E+V  LL+     G  +  K+ +G+ PLHIAA  G   IV+ LL     +
Sbjct: 44  LHWACSAGHTEIVEFLLQL----GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV 99

Query: 191 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKA 250
           +     +  TPL  AA++    +   LL   G   +        A+H AA +G++ +V  
Sbjct: 100 NAVNQ-NGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 251 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 310
           LL        + D +G T LH+A   +  E  K L+   A+I  + +K   T L VA   
Sbjct: 158 LLFYKASTNIQ-DTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAKGG 215

Query: 311 KRTEIVTELLS 321
               ++ + L+
Sbjct: 216 L--GLILKRLA 224

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  111 bits (280), Expect = 4e-28
 Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 11/217 (5%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 186
                  A      E+   +L          TR ++     LH A   GH  IV+ LL  
Sbjct: 7   NIMICNLAYSGKLDELKERILAD----KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 187 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 246
              ++     +  +PL  AA+ G   +V  LL K G  +     NG   LH+AA +   +
Sbjct: 63  GVPVNDKDD-AGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHE 120

Query: 247 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 306
           +   LL        + D    TA+H A    + ++V +LL   A+   + D  GNT LH+
Sbjct: 121 IAVMLLEGGANPDAK-DHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHL 178

Query: 307 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 343
           A  ++R E    L++    ++    ++ KT L +A+G
Sbjct: 179 ACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKG 214

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  103 bits (259), Expect = 3e-25
 Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 31/218 (14%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           T LH A   G    V+  +  G+                        VN+ ++ G + L 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVP-----------------------VNDKDDAGWSPLH 78

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 194
            AA  G  E+V  LL       +   N++G  PLH AA +  H I  +LL+   +     
Sbjct: 79  IAASAGXDEIVKALLVKGAH--VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

Query: 195 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 254
              +AT +  AA +G+  +V+ LL        I  + G   LH A  +  V+  K L+++
Sbjct: 137 H-YDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194

Query: 255 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 292
              +    +K+ +T L +A  G    ++   L      
Sbjct: 195 GASIYIE-NKEEKTPLQVAKGGL--GLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 88.4 bits (219), Expect = 6e-20
 Identities = 42/205 (20%), Positives = 68/205 (33%), Gaps = 46/205 (22%)

Query: 160 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 219
              S     ++A       + + +L                           ++      
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADK------------------------SLATR--- 35

Query: 220 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR--RTDKKGQTALHMAVKGQ 277
            D         + + ALH+A   GH ++V+ LL            D  G + LH+A    
Sbjct: 36  TD--------QDSRTALHWACSAGHTEIVEFLLQLG---VPVNDKDDAGWSPLHIAASAG 84

Query: 278 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 337
             E+VK LL   A +    ++ G T LH A  K R EI   LL     N +A      TA
Sbjct: 85  XDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATA 142

Query: 338 LDIAEGLPSSEEASEIKDCLARCGA 362
           +  A    +++   ++   L    A
Sbjct: 143 MHRA----AAKGNLKMVHILLFYKA 163

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 15/130 (11%)

Query: 68  QVTGRHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGN-------LSGAEFDTEVAEI-- 117
               ++  T LH AA +        +L  G +     +        + A+ + ++  I  
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159

Query: 118 -RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH 176
              +  N  +  G T L  A D+  +E    L+       +  +N+    PL +A   G 
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS--IYIENKEEKTPLQVAK--GG 215

Query: 177 HAIVQVLLDH 186
             ++   L  
Sbjct: 216 LGLILKRLAE 225

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  110 bits (278), Expect = 8e-29
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 8/135 (5%)

Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 179
           ++ +    +  L TAA +G +E V +LL+     G      NR G  P+ +    G   +
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEA----GADPNALNRFGRRPIQVMM-MGSAQV 59

Query: 180 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 239
            ++LL H    +     +   P+  AA  G    +  L    G  L++  + G+  +  A
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLA 118

Query: 240 ARQGHVDVVKALLSK 254
             QGH D+ + L + 
Sbjct: 119 EEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 98.7 bits (247), Expect = 1e-24
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 9/125 (7%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 257
             L +AA RG    V +LL   G         G+  +      G   V + LL    +P 
Sbjct: 14  AGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPN 71

Query: 258 LARRTDKKGQT-ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 316
            A   D    T  +H A +    + + +L  A A  + + D +G   + +A  +   +I 
Sbjct: 72  CA---DPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIA 127

Query: 317 TELLS 321
             L +
Sbjct: 128 RYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 94.4 bits (236), Expect = 3e-23
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 230 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 289
            +    L  AA +G V+ V+ LL          ++ G+  + + + G S +V +LLL   
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMMG-SAQVAELLLLHG 67

Query: 290 AAIVMLPDKFGNT-ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           A      D    T  +H A R+   + +  L       ++      +  +D+A
Sbjct: 68  AE-PNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 4/80 (5%)

Query: 263 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 322
                  L  A      E V+ LLEA A      ++FG   + V       ++   LL  
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLH 66

Query: 323 PDTNVNALTRDHKT-ALDIA 341
                N       T  +  A
Sbjct: 67  -GAEPNCADPATLTRPVHDA 85

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  110 bits (278), Expect = 1e-28
 Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 160 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 217
                 D L  AA +G    V+ LL+   +P+   + G     P+      G   V   L
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYG---RRPIQVMM-MGSARVAELL 63

Query: 218 LSKDGGLLEISRSNGK-NALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAV 274
           L   G     +        +H AAR+G +D +  L        +    D  G+  + +A 
Sbjct: 64  LLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR---DAWGRLPVDLAE 119

Query: 275 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 316
           +    +V + L  A           G+    +   +  ++I 
Sbjct: 120 ELGHRDVARYLRAAAG------GTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  108 bits (273), Expect = 5e-28
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 14/163 (8%)

Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 179
                E     L TAA +G +E V  LL+     G      N  G  P+ +    G   +
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEA----GANPNAPNSYGRRPIQVMM-MGSARV 59

Query: 180 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 239
            ++LL H    +     +   P+  AA  G    +  L    G  L++  + G+  +  A
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLA 118

Query: 240 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 282
              GH DV + L +           +G     +       ++ 
Sbjct: 119 EELGHRDVARYLRAAA------GGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  108 bits (272), Expect = 9e-28
 Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 14/150 (9%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 257
             L +AA RG    V  LL   G       S G+  +      G   V + LL    +P 
Sbjct: 14  DWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPN 71

Query: 258 LARRTDKKGQT-ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 316
            A   D    T  +H A +    + + +L  A A  + + D +G   + +A      ++ 
Sbjct: 72  CA---DPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVA 127

Query: 317 TELLSLPDTNVNALTRDHKTAL----DIAE 342
             L +               A     DI +
Sbjct: 128 RYLRAA-AGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  105 bits (264), Expect = 1e-26
 Identities = 40/182 (21%), Positives = 54/182 (29%), Gaps = 47/182 (25%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
              L  AA RG +  V+ +L            GA              N  N  G   + 
Sbjct: 13  ADWLATAAARGRVEEVRALL----EA------GAN------------PNAPNSYGRRPIQ 50

Query: 135 TAADKGHIEVVNELLKY------STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-- 186
                G   V   LL +      +    LTR       P+H AA +G    + VL     
Sbjct: 51  VMM-MGSARVAELLLLHGAEPNCADPATLTR-------PVHDAAREGFLDTLVVLHRAGA 102

Query: 187 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 246
              +    G     P+  A   GH  V   L +  GG        G N     A +G  D
Sbjct: 103 RLDVRDAWG---RLPVDLAEELGHRDVARYLRAAAGGT------RGSNHARIDAAEGPSD 153

Query: 247 VV 248
           + 
Sbjct: 154 IP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 92.5 bits (231), Expect = 3e-22
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 231 NGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 288
              + L  AA +G V+ V+ALL    +P      +  G+  + + + G S  V +LLL  
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMMMG-SARVAELLLLH 66

Query: 289 DAAIVMLPDKFGNT-ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
            A      D    T  +H A R+   + +  L       ++      +  +D+A
Sbjct: 67  GAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLA 118

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  102 bits (258), Expect = 3e-26
 Identities = 55/122 (45%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           TPL  AA  GH  VV  LL   G  +     NG+  LH AAR GH++VVK LL     + 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 319
            + DK G+T LH+A +    EVVKLLLEA A +    DK G T LH+A R    E+V  L
Sbjct: 63  AK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLL 120

Query: 320 LS 321
           L 
Sbjct: 121 LE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  101 bits (255), Expect = 6e-26
 Identities = 54/128 (42%), Positives = 72/128 (56%), Gaps = 3/128 (2%)

Query: 163 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG 222
           +G  PLH+AA  GH  +V++LL+    ++     +  TPL  AA  GH  VV  LL   G
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA-G 58

Query: 223 GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 282
             +     NG+  LH AAR GH++VVK LL     +  + DK G+T LH+A +    EVV
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVV 117

Query: 283 KLLLEADA 290
           KLLLEA A
Sbjct: 118 KLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 95.1 bits (238), Expect = 2e-23
 Identities = 50/113 (44%), Positives = 64/113 (56%), Gaps = 7/113 (6%)

Query: 231 NGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 288
           NG+  LH AAR GH++VVK LL    D       DK G+T LH+A +    EVVKLLLEA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 289 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
            A +    DK G T LH+A R    E+V  LL     +VNA  ++ +T L +A
Sbjct: 58  GADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 87.0 bits (217), Expect = 9e-21
 Identities = 60/182 (32%), Positives = 79/182 (43%), Gaps = 65/182 (35%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLS-GAEFDTEVAEIRSSVVNEVNELGETALF 134
           T LHLAA+ G L  VK +L          L  GA+            VN  ++ G T L 
Sbjct: 4   TPLHLAARNGHLEVVK-LL----------LEAGAD------------VNAKDKNGRTPLH 40

Query: 135 TAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ 192
            AA  GH+EVV  LL+     G  +  K+++G  PLH+AA  GH  +V++LL+       
Sbjct: 41  LAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG----- 91

Query: 193 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 252
                              A VN    KD         NG+  LH AAR GH++VVK LL
Sbjct: 92  -------------------ADVNA---KD--------KNGRTPLHLAARNGHLEVVKLLL 121

Query: 253 SK 254
             
Sbjct: 122 EA 123

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (256), Expect = 7e-26
 Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 160 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 217
            N  G   LHIA+++G    V+ LL +  DP++    G    TPL  A   GH  VV  L
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAG---WTPLHEACNHGHLKVVELL 62

Query: 218 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVK 275
           L     L+  +     + LH AA+ GHVD+VK LLS           +  G   +     
Sbjct: 63  LQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV---NIFGLRPVDYTDD 118

Query: 276 GQSCEVVKLLLEADA 290
                ++ L  + ++
Sbjct: 119 ESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 98.6 bits (247), Expect = 1e-24
 Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 11/138 (7%)

Query: 231 NGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 288
            G+  LH A+ +G +  V+ LL    DP      D  G T LH A      +VV+LLL+ 
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 289 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSE 348
            A  V       ++ LH A +    +IV  LLS    + NA+       +D        E
Sbjct: 66  KAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYT----DDE 119

Query: 349 EASEIKDCLARCGAVRAN 366
               +     +  +  A+
Sbjct: 120 SMKSLLLLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 85.9 bits (214), Expect = 4e-20
 Identities = 34/179 (18%), Positives = 57/179 (31%), Gaps = 61/179 (34%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           T LH+A+ +GD+ +V+  +  G D                        N  +  G T L 
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSD-----------------------PNVKDHAGWTPLH 48

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 194
            A + GH++VV  LL++     +         PLH AA  GH  IV++LL +        
Sbjct: 49  EACNHGHLKVVELLLQHKAL--VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG------- 99

Query: 195 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 253
                            A  N     +          G   + +   +    ++     
Sbjct: 100 -----------------ASRNA---VN--------IFGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 297 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           +  G T LH+A+ K     V  LL    ++ N       T L  A
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEA 50

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 24/82 (29%)

Query: 70  TGRHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNEL 128
           TG  ND+ LH AA+ G +  VK  + YG                          N VN  
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-----------------------RNAVNIF 108

Query: 129 GETALFTAADKGHIEVVNELLK 150
           G   +    D+    ++    K
Sbjct: 109 GLRPVDYTDDESMKSLLLLPEK 130

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  101 bits (254), Expect = 1e-25
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 10/127 (7%)

Query: 195 GPSNA---TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 251
           GP  +      + A   G    V + ++K G  +  +   G+  LH+AA  G +++++ L
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

Query: 252 LSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR 309
           L K  D       DK   T L  AV       VKLLL   A   +     G TA      
Sbjct: 60  LLKGADIN---APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTAFEATDN 115

Query: 310 KKRTEIV 316
           +    ++
Sbjct: 116 QAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 96.3 bits (241), Expect = 6e-24
 Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 3/112 (2%)

Query: 230 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 289
           S       +A + G +D VK  ++K   +  RT + G+  LH A      E+++ LL   
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 290 AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           A I   PDK   T L  A  +     V  LLS    +      D  TA +  
Sbjct: 64  ADINA-PDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 95.5 bits (239), Expect = 1e-23
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 20/133 (15%)

Query: 125 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
           +  + +     A   G ++ V + +  +  E + R    G  PLH AA  G   I++ LL
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYV--AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 185 DH--DPSLSQTTGPSNA------TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL 236
               D          NA      TPL+SA   GH + V  LLSK G    +   +G  A 
Sbjct: 61  LKGADI---------NAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAF 110

Query: 237 HFAARQGHVDVVK 249
                Q    +++
Sbjct: 111 EATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 61.6 bits (151), Expect = 8e-12
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 261 RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 320
                       A+K    + VK  +     +     + G   LH A    + EI+  LL
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLL 60

Query: 321 SLPDTNVNALTRDHKTALDIA 341
                ++NA  + H T L  A
Sbjct: 61  LK-GADINAPDKHHITPLLSA 80

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  100 bits (251), Expect = 1e-24
 Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 20/176 (11%)

Query: 162 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA--TPLVSAATRGHTAVVNELLS 219
            S +  +  AA+ G +     L +      ++   SN     L +        +   L++
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 220 KDGGLLEISRSNGKNALHFAARQGHVDV------VKALLSK--DPQLARRTDKKGQTALH 271
           K G  ++     G        + G  D+       K  L K  D        K  +  + 
Sbjct: 64  K-GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI---TALYKPYKIVVF 119

Query: 272 MAVKGQSCE------VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 321
             +     +      + KL+       +++ DK+G TAL    R ++   +  +  
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 92.0 bits (229), Expect = 9e-22
 Identities = 31/189 (16%), Positives = 53/189 (28%), Gaps = 34/189 (17%)

Query: 197 SNA----TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN-----ALHFAARQGHVDV 247
           SNA      + +AA  G      EL  K     E   S  K+      L     +    +
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKI 57

Query: 248 VKALLSK--DPQLARRTDKKGQTALHMAVKG------QSCEVVKLLLEADAAIVMLPDKF 299
              L++K  D +      K+G T      +G       + E+ K+ LE  A I     K 
Sbjct: 58  SMFLINKGADIKS---RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT-ALYKP 113

Query: 300 GNTALHVATRK------KRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEI 353
               +            +   +   + S     +    +   TAL+         +    
Sbjct: 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV----KRCQKPIA 169

Query: 354 KDCLARCGA 362
              +     
Sbjct: 170 LKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 87.8 bits (218), Expect = 2e-20
 Identities = 23/195 (11%), Positives = 47/195 (24%), Gaps = 42/195 (21%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFT 135
             +  AA  G      ++             G E                + +    L  
Sbjct: 8   RTVSAAAMLGTYEDFLELF----------EKGYE---------DKESVLKSNILYDVLRN 48

Query: 136 AADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHH------AIVQVLLDH- 186
             D+   ++   L+      G  +  + + G          G +       + ++ L+  
Sbjct: 49  NNDEARYKISMFLINK----GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG 104

Query: 187 -DPSLSQTTGPSNATPLVSAATRGH------TAVVNELLSKDGGLLEISRSNGKNALHFA 239
            D +            +                +   + S+ G  L I    G  AL F 
Sbjct: 105 ADITALYKPY---KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV 161

Query: 240 ARQGHVDVVKALLSK 254
            R      +K +   
Sbjct: 162 KRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 60.5 bits (147), Expect = 8e-11
 Identities = 13/125 (10%), Positives = 35/125 (28%), Gaps = 25/125 (20%)

Query: 69  VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNL--SGAEFDTEVAEIRSSVVNEVN 126
              +   T      Q G             +++       GA+            +  + 
Sbjct: 70  SRTKEGTTLFFPLFQGGGNDITG------TTELCKIFLEKGAD------------ITALY 111

Query: 127 ELGETALFTAADKGHIEVVNELLKYS---TKEG--LTRKNRSGFDPLHIAAVQGHHAIVQ 181
           +  +  +F       ++    +  Y    ++ G  L  K++ G   L           ++
Sbjct: 112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171

Query: 182 VLLDH 186
           ++ D+
Sbjct: 172 MMEDY 176

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 95.5 bits (239), Expect = 1e-23
 Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 37/155 (23%)

Query: 167 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 226
            L  AA  G    V++L+ +                         A VN    KD     
Sbjct: 17  KLLEAARAGQDDEVRILMANG------------------------ADVNA---KD----- 44

Query: 227 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 286
                G   L+ A   GH+++V+ LL     +    D  G T LH+A      E+ ++LL
Sbjct: 45  ---EYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAAFIGHLEIAEVLL 100

Query: 287 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 321
           +  A +    DKFG TA  ++      ++   L  
Sbjct: 101 KHGADVNAQ-DKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 90.5 bits (226), Expect = 9e-22
 Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 46/165 (27%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 186
               L  AA  G  + V  L+      G  +  K+  G  PL++A   GH  IV+VLL +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMAN----GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 187 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 246
                                    A VN     D        + G   LH AA  GH++
Sbjct: 70  G------------------------ADVNA---VD--------AIGFTPLHLAAFIGHLE 94

Query: 247 VVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 289
           + + LL    D       DK G+TA  +++   + ++ ++L + +
Sbjct: 95  IAEVLLKHGADV---NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 89.8 bits (224), Expect = 1e-21
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 6/119 (5%)

Query: 226 EISRSNGKN---ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 282
                +G +    L  AAR G  D V+ L++    +  + D+ G T L++A      E+V
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIV 63

Query: 283 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           ++LL+  A +    D  G T LH+A      EI  E+L     +VNA  +  KTA DI+
Sbjct: 64  EVLLKNGADVNA-VDAIGFTPLHLAAFIGHLEIA-EVLLKHGADVNAQDKFGKTAFDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 24/78 (30%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           T LHLAA  G L   +  + +G D                       VN  ++ G+TA  
Sbjct: 82  TPLHLAAFIGHLEIAEVLLKHGAD-----------------------VNAQDKFGKTAFD 118

Query: 135 TAADKGHIEVVNELLKYS 152
            +   G+ ++   L K +
Sbjct: 119 ISIGNGNEDLAEILQKLN 136

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 92.1 bits (230), Expect = 1e-22
 Identities = 40/108 (37%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 231 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 290
           +G   LH AA+ GH + VK LLSK   +     K G T LH+A K    E+VKLLL   A
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66

Query: 291 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 338
            +     K GNT  H+A +    EIV  L +    +VNA +       
Sbjct: 67  DVNA-RSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 89.7 bits (224), Expect = 1e-21
 Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 3/106 (2%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           TPL +AA  GH   V +LLSK G  +     +G   LH AA+ GH ++VK LL+K   + 
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69

Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH 305
            R  K G T  H+A K    E+VKLL    A +        +   H
Sbjct: 70  AR-SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA-RSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 87.4 bits (218), Expect = 6e-21
 Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 42/148 (28%)

Query: 126 NELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVL 183
           ++ G T L  AA  GH E V +LL      G  +  +++ G  PLH+AA  GH  IV++L
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSK----GADVNARSKDGNTPLHLAAKNGHAEIVKLL 61

Query: 184 LDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 243
           L                           A VN    +          +G    H A + G
Sbjct: 62  LAKG------------------------ADVNA---RS--------KDGNTPEHLAKKNG 86

Query: 244 HVDVVKALLSKDPQLARRTDKKGQTALH 271
           H ++VK L +K   +  R         H
Sbjct: 87  HHEIVKLLDAKGADVNAR-SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 67.0 bits (165), Expect = 8e-14
 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 30/114 (26%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           T LH AA+ G    VK+ +  G D                       VN  ++ G T L 
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGAD-----------------------VNARSKDGNTPLH 47

Query: 135 TAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 186
            AA  GH E+V  LL      G  +  +++ G  P H+A   GHH IV++L   
Sbjct: 48  LAAKNGHAEIVKLLLAK----GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK 97

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 66.6 bits (164), Expect = 9e-14
 Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 263 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 322
            K G T LH A K    E VK LL   A +     K GNT LH+A +    EIV  LL+ 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 323 PDTNVNALTRDHKTALDIA 341
              +VNA ++D  T   +A
Sbjct: 65  -GADVNARSKDGNTPEHLA 82

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 43.1 bits (103), Expect = 2e-05
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 28/99 (28%)

Query: 73  HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETA 132
             +T LHLAA+ G    VK +L    ++      GA+            VN  ++ G T 
Sbjct: 41  DGNTPLHLAAKNGHAEIVKLLL----AK------GAD------------VNARSKDGNTP 78

Query: 133 LFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLH 169
              A   GH E+V  L       G  +  ++       H
Sbjct: 79  EHLAKKNGHHEIVKLLDAK----GADVNARSWGSSHHHH 113

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 97.0 bits (241), Expect = 3e-22
 Identities = 50/319 (15%), Positives = 92/319 (28%), Gaps = 51/319 (15%)

Query: 12  DLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQA-GKKKYVKQVT 70
           DL    +S  L       S +                +L    + +  +       +   
Sbjct: 33  DLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSE 92

Query: 71  GRHNDTELHLAAQRGDLGAVKQIL--YGIDSQMVGNLSGAEFDTEVAEIRSSVVNE-VNE 127
           G  ++ +    +    L  V        ++                       +N  V+E
Sbjct: 93  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLN-----------------------LNIPVDE 129

Query: 128 LGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGH---HAIVQV 182
            G T L       ++E+V  L+K+    G      +  G   L  A    +       + 
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKH----GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 185

Query: 183 LLDHDPSLSQTTGPSNATPL-----------VSAATRGHTAVVNELLSKDGGLLEISRSN 231
           LLD+           N T L            SAA + +  ++   + K       S +N
Sbjct: 186 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 245

Query: 232 GKNALHFAARQGHVDVVKALLSKDPQLARR---TDKKGQTALHMAVKGQSCEVVKLLLEA 288
            K +          D +   L     +A      D  G T L++A +  +  +V  LL+ 
Sbjct: 246 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY 305

Query: 289 DAAIVMLPDKFGNTALHVA 307
            A    + +K G   +   
Sbjct: 306 GADP-FIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 93.6 bits (232), Expect = 5e-21
 Identities = 40/251 (15%), Positives = 74/251 (29%), Gaps = 39/251 (15%)

Query: 118 RSSVVNEVNELGETAL-FTAADKGHIEVVNELLKYST-------KEGLTRKNRSGFDPLH 169
            SS  N             + D    EV +              + G T        PLH
Sbjct: 85  DSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNT--------PLH 136

Query: 170 IAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGH---TAVVNELLSKDGGL 224
                 +  +V+ L+ H  +       G    + LV A    +   +     LL      
Sbjct: 137 WLTSIANLELVKHLVKHGSNRLYGDNMG---ESCLVKAVKSVNNYDSGTFEALLDYLYPC 193

Query: 225 LEISRSNGKNALHFAAR-----------QGHVDVVKALLSKDPQLARRTDKKGQTALHMA 273
           L +  S  +  LH               + ++D++   + K      ++    + +    
Sbjct: 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253

Query: 274 VKGQSCEVVKLLLEADAAIVML---PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL 330
             G+  + +   L+    I  +    D  G+T L++A R     IV  LL     +    
Sbjct: 254 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIA 312

Query: 331 TRDHKTALDIA 341
            +     +D  
Sbjct: 313 NKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 75.1 bits (184), Expect = 6e-15
 Identities = 33/277 (11%), Positives = 70/277 (25%), Gaps = 21/277 (7%)

Query: 154 KEGLTRKNRS-GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA----------TPL 202
             G    N +   D      +   H +    L     + +                   L
Sbjct: 8   PSGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFL 67

Query: 203 VSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT 262
                     +   L +          S+ +   H +      +V  A  +    L    
Sbjct: 68  QRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV 127

Query: 263 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK---KRTEIVTEL 319
           D+ G T LH      + E+VK L++  +   +  D  G + L  A +      +     L
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEAL 186

Query: 320 LSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTV 379
           L      +      ++T L            S               +         + +
Sbjct: 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN------RPI 240

Query: 380 TQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIN 416
                +  ++        K+    + +L+ +    +N
Sbjct: 241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 277

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 9/121 (7%)

Query: 57  IDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAE 116
           I               + D  +    ++ +                 N    +   E  +
Sbjct: 208 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD 267

Query: 117 IR---SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIA 171
           ++   ++++N  +  G+T L  AA  G+I +V+ LL Y    G      N+SG  P+   
Sbjct: 268 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY----GADPFIANKSGLRPVDFG 323

Query: 172 A 172
           A
Sbjct: 324 A 324

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 87.2 bits (217), Expect = 6e-21
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 205 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK 264
            ++  H    + L+ + G  +    S+    L  AAR G  D V+ L++    +    DK
Sbjct: 1   GSSHHHHHHSSGLVPR-GSHMG---SDLGKKLLEAARAGQDDEVRILMANGADV-AAKDK 55

Query: 265 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 319
            G T LH+A +    EVVKLLLEA A +    DKFG TA  ++      ++   L
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 80.7 bits (200), Expect = 1e-18
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 41/150 (27%)

Query: 136 AADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG 195
            +   H    + L+   +              L  AA  G    V++L+ +         
Sbjct: 1   GSSHHHHHHSSGLVPRGSH-----MGSDLGKKLLEAARAGQDDEVRILMANG-------- 47

Query: 196 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 255
                           A V     KD         NG   LH AAR GH++VVK LL   
Sbjct: 48  ----------------ADVAA---KD--------KNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 256 PQLARRTDKKGQTALHMAVKGQSCEVVKLL 285
             +  + DK G+TA  +++   + ++ ++L
Sbjct: 81  ADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 74.9 bits (185), Expect = 1e-16
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 6/116 (5%)

Query: 239 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 298
            +   H      L+ +   +           L  A +    + V++L+   A +    DK
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGADVAA-KDK 55

Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIK 354
            G+T LH+A R    E+V  LL     +V A  +  KTA DI+    + + A  ++
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 68.0 bits (167), Expect = 4e-14
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 11/98 (11%)

Query: 124 EVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQ 181
            +       L  AA  G  + V  L+      G  +  K+++G  PLH+AA  GH  +V+
Sbjct: 19  HMGSDLGKKLLEAARAGQDDEVRILMAN----GADVAAKDKNGSTPLHLAARNGHLEVVK 74

Query: 182 VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 217
           +LL+   D       G    T    +   G+  +   L
Sbjct: 75  LLLEAGADVXAQDKFG---KTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 28/110 (25%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFT 135
            +L  AA+ G    V+ ++    +       GA+            V   ++ G T L  
Sbjct: 26  KKLLEAARAGQDDEVRILM----AN------GAD------------VAAKDKNGSTPLHL 63

Query: 136 AADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVL 183
           AA  GH+EVV  LL+     G  +  +++ G     I+   G+  + ++L
Sbjct: 64  AARNGHLEVVKLLLEA----GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 85.1 bits (212), Expect = 2e-20
 Identities = 44/93 (47%), Positives = 53/93 (56%), Gaps = 6/93 (6%)

Query: 231 NGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 288
           NG+  LH AAR GH++VVK LL    D       DK G+T LH+A +    EVVKLLLEA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 289 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 321
            A +    DK G T LH+A R    E+V  LL 
Sbjct: 58  GADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 82.8 bits (206), Expect = 1e-19
 Identities = 44/93 (47%), Positives = 51/93 (54%), Gaps = 6/93 (6%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 257
           TPL  AA  GH  VV  LL   G  +     NG+  LH AAR GH++VVK LL    D  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 258 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 290
                DK G+T LH+A +    EVVKLLLEA A
Sbjct: 63  ---AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 79.3 bits (197), Expect = 2e-18
 Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 6/94 (6%)

Query: 163 SGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 220
           +G  PLH+AA  GH  +V++LL+   D +     G    TPL  AA  GH  VV  LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG---RTPLHLAARNGHLEVVKLLLEA 57

Query: 221 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 254
            G  +     NG+  LH AAR GH++VVK LL  
Sbjct: 58  -GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.5 bits (169), Expect = 1e-14
 Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 28/113 (24%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFT 135
           T LHLAA+ G L  VK +L            GA+            VN  ++ G T L  
Sbjct: 4   TPLHLAARNGHLEVVKLLL----EA------GAD------------VNAKDKNGRTPLHL 41

Query: 136 AADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 186
           AA  GH+EVV  LL+     G  +  K+++G  PLH+AA  GH  +V++LL+ 
Sbjct: 42  AARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 64.6 bits (157), Expect = 1e-11
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 228 SRSNGKNALHFAARQGHVDVVKA--LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 285
                + ALH A R      +     L ++     +   KG TALH      + E +KLL
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 286 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 322
           L   A+I  + ++ G T L +A R K       L   
Sbjct: 225 LRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 15/151 (9%)

Query: 150 KYSTKEGLTRKNRSGFDPLH---IAAVQGHHAIVQVLLDHDPSLSQTTGPSNA-----TP 201
           KY  +    +K+      LH    A        +         L++    +N      T 
Sbjct: 113 KYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETA 172

Query: 202 LVSAATRGHTAVVN--ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 257
           L  A        ++  + L ++ G L+     G  ALH+     + + +K LL      +
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232

Query: 258 LARRTDKKGQTALHMAVKGQSCEVVKLLLEA 288
           +    ++ G+T L +A + +     +LL +A
Sbjct: 233 I---ANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 260 RRTDKKGQTALHMAVKG--QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 317
               +  +TALH+AV+   ++   +   L  ++  +      G+TALH        E + 
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL- 221

Query: 318 ELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQP 371
           +LL     ++       +T LDIA+      +    ++ L +     +   N  
Sbjct: 222 KLLLRGKASIEIANESGETPLDIAK----RLKHEHCEELLTQA---LSGRFNSH 268

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 73  HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETA 132
            ++T LHLA +  D  ++  + + +        +               +++    G TA
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLV-------QNSGN------------LDKQTGKGSTA 208

Query: 133 LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
           L       + E +  LL+      +   N SG  PL IA    H    ++L 
Sbjct: 209 LHYCCLTDNAECLKLLLRGKASIEIA--NESGETPLDIAKRLKHEHCEELLT 258

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 168 LHIAAVQGHHAIVQVLLDHDPSLSQTTG-PSNATPLVSAATRGHTAVVNELLSKDGGLLE 226
              +        +   L H   ++   G   NATPL+ A          E L ++G  + 
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLAC-EFLLQNGANVN 262

Query: 227 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 286
            + S G+  LH A   GH  +    L +   L  R D +G+  L +A++  + ++V LL 
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGAR-DSEGRDPLTIAMETANADIVTLLR 321

Query: 287 EAD 289
            A 
Sbjct: 322 LAK 324

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 185
            +   T L  A     +     LL+      + + + +G  PLH A + GH  +  + L 
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGAN--VNQADSAGRGPLHHATILGHTGLACLFLK 289

Query: 186 HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 245
               L          PL  A    +  +V  L        E ++    +  +        
Sbjct: 290 RGADLGARD-SEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETY---LDIFR 345

Query: 246 DVVKALLSKDPQLARRTD 263
           D          +L+RR+ 
Sbjct: 346 DFSLMASDDPEKLSRRSH 363

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.1 bits (111), Expect = 9e-06
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 231 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 290
           +    L  A     +   + LL     + +  D  G+  LH A       +  L L+  A
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHATILGHTGLACLFLKRGA 292

Query: 291 AIVMLPDKFGNTALHVATRKKRTEIVTELL 320
             +   D  G   L +A      +IVT L 
Sbjct: 293 D-LGARDSEGRDPLTIAMETANADIVTLLR 321

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 150 KYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA-----TPLVS 204
           KY       R+       L  A        V     +     Q     +A       L  
Sbjct: 138 KYVEHR-FARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHL 196

Query: 205 AATRGHTAVVN--ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLAR 260
           A    + A +   + + ++GG L+   ++G  ALH+AA     D +K LL          
Sbjct: 197 AVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT-- 254

Query: 261 RTDKKGQTALHMAVKGQSCEVVKLLLEADA 290
             ++ G+TAL +A K    E  +LL +A A
Sbjct: 255 -VNEAGETALDIARKKHHKECEELLEQAQA 283

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 228 SRSNGKNALHFAARQGHVD--VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 285
           +++  +  LH A +  +     +   + ++          G TALH A      + +KLL
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245

Query: 286 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN 326
           L+  A +  + ++ G TAL +A +K   E   ELL      
Sbjct: 246 LKGRALVGTV-NEAGETALDIARKKHHKECE-ELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 54.2 bits (130), Expect = 4e-08
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 256 PQLARRTDKKGQTALHMAV---KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR 312
           P          +  LH+AV      S  +V  ++  +   +      GNTALH A    +
Sbjct: 180 PLPGPDAQAPEELVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTALHYAALYNQ 238

Query: 313 TEIVTELLSLPDTNVNALTRDHKTALDIA 341
            + + +LL      V  +    +TALDIA
Sbjct: 239 PDCL-KLLLKGRALVGTVNEAGETALDIA 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.4 bits (120), Expect = 6e-07
 Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 29/112 (25%)

Query: 76  TELHLAAQRGDLGAVKQ----ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGET 131
             LHLA +  +  ++      I  G                         ++     G T
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGH-----------------------LDAKAADGNT 228

Query: 132 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVL 183
           AL  AA     + +  LLK      +   N +G   L IA  + H    ++L
Sbjct: 229 ALHYAALYNQPDCLKLLLKGRAL--VGTVNEAGETALDIARKKHHKECEELL 278

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 7e-08
 Identities = 66/408 (16%), Positives = 127/408 (31%), Gaps = 103/408 (25%)

Query: 73  HNDTEL-HLAAQRGDLGAV--KQILYGIDSQMVGN-----LSGAEFDTEVAEIRSSVVNE 124
           H D E      Q  D+ +V     +   D + V +     LS  E D         ++  
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID--------HIIMS 57

Query: 125 VNELGET-ALF-TAADKGHIEV---VNELLK--Y----------------------STKE 155
            + +  T  LF T   K    V   V E+L+  Y                        ++
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 156 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVN 215
            L   N+  F   +++ +Q +  + Q LL     L     P+    +      G T V  
Sbjct: 118 RLYNDNQV-FAKYNVSRLQPYLKLRQALL----ELR----PAKNVLIDGVLGSGKTWVAL 168

Query: 216 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG-QTALHMAV 274
           ++       ++         L+      + +  + +L    +L  + D      + H + 
Sbjct: 169 DVCLSYK--VQCKMDFKIFWLNL----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 275 KGQSCEVVKLLLEADAAIVMLPDKFGNTAL----HVATRKK--------RTEIVTELLSL 322
                  ++  L       +L  K     L    +V   K         +  + T    +
Sbjct: 223 IKLRIHSIQAELR-----RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 323 PDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKT---- 378
            D  ++A T  H +    +  L + +E   +   L +    R  +L  PR E+  T    
Sbjct: 278 TDF-LSAATTTHISLDHHSMTL-TPDEVKSL---LLKYLDCRPQDL--PR-EVLTTNPRR 329

Query: 379 VTQI---KKDVHTQLEQTRRTNKN-VHNISK---------ELRKLHRE 413
           ++ I    +D     +  +  N + +  I +         E RK+   
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 52/331 (15%), Positives = 94/331 (28%), Gaps = 99/331 (29%)

Query: 224 LLEISRSNGKNALH-FAARQGHVDVVKALLSKD-PQLARRTDKKGQTALHMAVKGQSCEV 281
           L     S  +  +  F         V+ +L  +   L         + +    +  S   
Sbjct: 67  LFWTLLSKQEEMVQKF---------VEEVLRINYKFLM--------SPIKTEQRQPSMMT 109

Query: 282 VKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL-PDTNVNALTRDH------ 334
              + + D  +      F     +V+  +   ++   LL L P  NV  +          
Sbjct: 110 RMYIEQRDR-LYNDNQVF--AKYNVSRLQPYLKLRQALLELRPAKNV-LI---DGVLGSG 162

Query: 335 KTALDIAEGLPSSEEASEIKDC------LARCGAVRANELNQPRDELR---KTVTQIKKD 385
           KT +   +    S +     D       L  C        N P   L    K + QI  +
Sbjct: 163 KTWV-ALDVC-LSYKVQCKMDFKIFWLNLKNC--------NSPETVLEMLQKLLYQIDPN 212

Query: 386 VHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDD 445
             ++ + +      +H+I  ELR+L +       N + V+                   +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKS--KPYENCLLVL------------------LN 252

Query: 446 DNGKAVVVRRASF----KIFFIFNAIALFTSL-AVVVVQITLV---RGETKAEKRVVEVI 497
                      +F    KI        +   L A     I+L       T  E +   ++
Sbjct: 253 VQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLL 307

Query: 498 NKLMWL--------ASVCT----SVAFIASS 516
            K  +L          V T     ++ IA S
Sbjct: 308 LK--YLDCRPQDLPREVLTTNPRRLSIIAES 336

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 12/40 (30%)

Query: 14 EKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNS 53
          EK     Q + K + ++SL      +  SA  PAL +  +
Sbjct: 18 EK-----Q-ALKKL-QASLKLY---ADDSA--PALAIKAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	591
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	99.98
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.78
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.77
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.76
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.72
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.63
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.63

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2e-41  Score=337.49  Aligned_cols=262  Identities=28%  Similarity=0.368  Sum_probs=239.4

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhccccccc-CCCCCcHHHHHHHhCcHHHHHHHHhc
Q 007741           73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEV-NELGETALFTAADKGHIEVVNELLKY  151 (591)
Q Consensus        73 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~~g~TpL~~Aa~~g~~~~v~~Ll~~  151 (591)
                      +|.||||.|++.|+.+++++|++.                      +..++.. +..|.||||+|+..|+.+++++|+++
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~----------------------g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~   61 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEG----------------------GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH   61 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT----------------------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHc----------------------CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            466999999999999999999986                      4446655 78899999999999999999999998


Q ss_pred             CCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceec---
Q 007741          152 STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS---  228 (591)
Q Consensus       152 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~---  228 (591)
                      +.+  ++..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++++. .++..   
T Consensus        62 g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~  137 (285)
T 1wdy_A           62 GAD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGA-NVNLRRKT  137 (285)
T ss_dssp             TCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCCCC
T ss_pred             CCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCC-Cccccccc
Confidence            755  5678889999999999999999999999999998 6678899999999999999999999999854 34444   


Q ss_pred             -------CCCCCcHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCcHHHHHHhCCC----HHHHHHHHHcCcccccCC
Q 007741          229 -------RSNGKNALHFAARQGHVDVVKALLSK-DPQLARRTDKKGQTALHMAVKGQS----CEVVKLLLEADAAIVMLP  296 (591)
Q Consensus       229 -------~~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~~~~  296 (591)
                             +..|.||||.|+..|+.+++++|++. +.++ +..|..|+||||+|+..++    .+++++|+++|++ ++.+
T Consensus       138 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~  215 (285)
T 1wdy_A          138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVR  215 (285)
T ss_dssp             CHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCC
T ss_pred             HHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCc
Confidence                   77899999999999999999999998 7776 7779999999999999999    9999999999998 8899


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCccccc
Q 007741          297 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRAN  366 (591)
Q Consensus       297 d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~  366 (591)
                      |..|+||||+|+..|+.+++++|++..|++++.+|..|+||||+|+..+    +.+++++|+++|++...
T Consensus       216 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~----~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK----LKKIAELLCKRGASTDC  281 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT----CHHHHHHHHHHSSCSCC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcC----cHHHHHHHHHcCCCCCc
Confidence            9999999999999999999999999779999999999999999999999    89999999999997543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.7e-41  Score=355.44  Aligned_cols=319  Identities=26%  Similarity=0.308  Sum_probs=254.2

Q ss_pred             cchhhhccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCc-ch----------hHHHHhhcccccccCCCCCc
Q 007741           63 KKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAE-FD----------TEVAEIRSSVVNEVNELGET  131 (591)
Q Consensus        63 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~n~~g~T  131 (591)
                      ........+.+|.||||.|+..|+.+++++|++...........+.. ..          .......+...+..+..|.|
T Consensus        69 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t  148 (437)
T 1n11_A           69 NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT  148 (437)
T ss_dssp             HTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC
Confidence            33344556788999999999999999999999764322111111110 00          00011124556667888889


Q ss_pred             HHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH
Q 007741          132 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT  211 (591)
Q Consensus       132 pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  211 (591)
                      |||+|+..|+.+++++|++++.+  .+..+..|.||||+|+..|+.+++++|+++++++ ...+..|.||||+|+..|+.
T Consensus       149 ~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~  225 (437)
T 1n11_A          149 PLHVAAKYGKVRVAELLLERDAH--PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQV  225 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC--TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCH
Confidence            99999999999999999987654  4667778899999999999999999999988886 55677889999999999999


Q ss_pred             HHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcc
Q 007741          212 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA  291 (591)
Q Consensus       212 ~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~  291 (591)
                      +++++|++. +...+..+..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|.+
T Consensus       226 ~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  303 (437)
T 1n11_A          226 EVARSLLQY-GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM  303 (437)
T ss_dssp             HHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHc-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc
Confidence            999999987 4456777888999999999999999999999999887 66788999999999999999999999999887


Q ss_pred             cccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccccccCCc
Q 007741          292 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQP  371 (591)
Q Consensus       292 ~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~  371 (591)
                       ++.+|..|+||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+..+    +.+++++|+++|++........
T Consensus       304 -~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~~~g----~~~iv~~Ll~~ga~~~~~~~~g  377 (437)
T 1n11_A          304 -VDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQG----HTDIVTLLLKNGASPNEVSSDG  377 (437)
T ss_dssp             -TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT----CHHHHHHHHHTTCCSCCCCSSS
T ss_pred             -CCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHCC----hHHHHHHHHHCcCCCCCCCCCC
Confidence             788899999999999999999999999994 9999999999999999999998    8899999999999877766666


Q ss_pred             hHHhhhhhhhhhhhhhhHHHH
Q 007741          372 RDELRKTVTQIKKDVHTQLEQ  392 (591)
Q Consensus       372 ~~~l~~~~~~~~~~~~~~l~~  392 (591)
                      .+.+.........++.+.++.
T Consensus       378 ~t~l~~A~~~g~~~~~~~l~~  398 (437)
T 1n11_A          378 TTPLAIAKRLGYISVTDVLKV  398 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHh
Confidence            666666555555555554443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.8e-41  Score=355.41  Aligned_cols=290  Identities=31%  Similarity=0.353  Sum_probs=243.0

Q ss_pred             hccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHH
Q 007741           68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNE  147 (591)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~  147 (591)
                      ...+..|.||||.||..|+.++|++|++.                      +..++..|..|.||||+|+..|+.++|++
T Consensus         8 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~----------------------g~~~~~~~~~~~t~L~~A~~~g~~~~v~~   65 (437)
T 1n11_A            8 GGGGESGLTPLHVASFMGHLPIVKNLLQR----------------------GASPNVSNVKVETPLHMAARAGHTEVAKY   65 (437)
T ss_dssp             -------CCHHHHHHHHTCHHHHHHHHHT----------------------TCCSCCSSSCCCCHHHHHHHHTCHHHHHH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHc----------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            34677899999999999999999999986                      56678888899999999999999999999


Q ss_pred             HHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccee
Q 007741          148 LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI  227 (591)
Q Consensus       148 Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~  227 (591)
                      |++++++  ++.++..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++++ .....
T Consensus        66 Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~  141 (437)
T 1n11_A           66 LLQNKAK--VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKE-ASQAC  141 (437)
T ss_dssp             HHHHTCC--SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCC
T ss_pred             HHhCCCC--CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCcC
Confidence            9998754  5677888999999999999999999999999887 567788999999999999999999999884 44566


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 007741          228 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA  307 (591)
Q Consensus       228 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A  307 (591)
                      .+..|.||||+|+..|+.+++++|+++++++ +..+..|.||||+|+..|+.+++++|++++++ ++..+.+|.||||+|
T Consensus       142 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A  219 (437)
T 1n11_A          142 MTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIA  219 (437)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHH
Confidence            7888999999999999999999999999887 66788999999999999999999999999887 777888899999999


Q ss_pred             HHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccccccCCchHHhhhhhhhhhhhhh
Q 007741          308 TRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVH  387 (591)
Q Consensus       308 ~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~  387 (591)
                      +..|+.+++++|++ .|++++..|..|.||||+|+..+    +.+++++|++.|+............+.........++.
T Consensus       220 ~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g----~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  294 (437)
T 1n11_A          220 AKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEG----HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVA  294 (437)
T ss_dssp             HHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTT----CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHCC----CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999998 48899999999999999999988    88899999998887665555555566655555444444


Q ss_pred             hHH
Q 007741          388 TQL  390 (591)
Q Consensus       388 ~~l  390 (591)
                      +.+
T Consensus       295 ~~L  297 (437)
T 1n11_A          295 DVL  297 (437)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.8e-40  Score=340.13  Aligned_cols=257  Identities=25%  Similarity=0.281  Sum_probs=145.9

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCC-CCCcHHHHHHHhCcHHHHHHHHhcC
Q 007741           74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNE-LGETALFTAADKGHIEVVNELLKYS  152 (591)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~-~g~TpL~~Aa~~g~~~~v~~Ll~~~  152 (591)
                      |+|+||.||+.|+.++|+.||+.                      ++.+|.++. .|.||||+||..|+.++|++|+++|
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~----------------------Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g   82 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEG----------------------GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG   82 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH----------------------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CChHHHHHHHcCCHHHHHHHHHC----------------------CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence            55999999999999999999986                      677887775 4999999999999999999999988


Q ss_pred             CCcc-------------------------------CccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcc---------
Q 007741          153 TKEG-------------------------------LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ---------  192 (591)
Q Consensus       153 ~~~~-------------------------------~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~---------  192 (591)
                      ++.+                               ++..|..|.||||+|+..|+.+++++|+++|+++..         
T Consensus        83 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~  162 (337)
T 4g8k_A           83 ADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE  162 (337)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC----
T ss_pred             CchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccc
Confidence            6532                               223344455555555555555555555555444321         


Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCC----HHHHHHHHhcCcccccccCCCCCc
Q 007741          193 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH----VDVVKALLSKDPQLARRTDKKGQT  268 (591)
Q Consensus       193 ~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t  268 (591)
                      ..+..|.||||+|+..|+.+++++||++.+.+++..|..|.|++|.++..++    .+++++|+++|+++ +.+|..|+|
T Consensus       163 ~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t  241 (337)
T 4g8k_A          163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKT  241 (337)
T ss_dssp             -CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCC
T ss_pred             cccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCC
Confidence            1122344555555555555555555544444444445555555554443222    23444455555544 334445555


Q ss_pred             HHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCCh
Q 007741          269 ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSE  348 (591)
Q Consensus       269 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~  348 (591)
                      |||+|+..|+.++++.|++.+...++.+|.+|+||||+|++.|+.++|++||+ .|+|+|.+     +||++|+..+   
T Consensus       242 ~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~~---  312 (337)
T 4g8k_A          242 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCG-----DLVMTARRNY---  312 (337)
T ss_dssp             HHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT-TSCSSTTC-----CHHHHHHHTT---
T ss_pred             HHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-----CHHHHHHHcC---
Confidence            55555555555555555543222244455555555555555555555555554 24444332     3555555544   


Q ss_pred             hhHHHHHHHHhcCcc
Q 007741          349 EASEIKDCLARCGAV  363 (591)
Q Consensus       349 ~~~~i~~~L~~~ga~  363 (591)
                       +.+++++|+++||+
T Consensus       313 -~~~iv~~Ll~~GA~  326 (337)
T 4g8k_A          313 -DHSLVKVLLSHGAK  326 (337)
T ss_dssp             -CHHHHHHHHHTTCC
T ss_pred             -CHHHHHHHHHCcCC
Confidence             44455555555544

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.9e-40  Score=328.83  Aligned_cols=267  Identities=23%  Similarity=0.281  Sum_probs=206.4

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHh
Q 007741           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLK  150 (591)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~  150 (591)
                      ...|.|+||+|+..|+.+.+..++...+......           .+....++..|..|.||||+|+..|+.++|++|++
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~   80 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----------RLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLIS   80 (285)
T ss_dssp             ------------------------------CCSE-----------ECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccch-----------hhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHH
Confidence            4578899999999999888888765432110000           00022357789999999999999999999999999


Q ss_pred             cCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCC
Q 007741          151 YSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS  230 (591)
Q Consensus       151 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~  230 (591)
                      .+.+  ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++++.. ++. +.
T Consensus        81 ~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~-~~  155 (285)
T 3d9h_A           81 QGWA--VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQP-ES  155 (285)
T ss_dssp             TTCC--SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSC-SC
T ss_pred             CCCC--CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC-CCC-CC
Confidence            8754  6778999999999999999999999999999987 67788999999999999999999999998543 333 45


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc
Q 007741          231 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  310 (591)
Q Consensus       231 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~  310 (591)
                      +|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|++.|++ ++ .|..|+||||+|+..
T Consensus       156 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~  232 (285)
T 3d9h_A          156 DLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRT  232 (285)
T ss_dssp             TTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHc
Confidence            6999999999999999999999999998 67799999999999999999999999999998 55 488999999999999


Q ss_pred             CcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhc-Ccc
Q 007741          311 KRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARC-GAV  363 (591)
Q Consensus       311 g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~-ga~  363 (591)
                      |+.+++++|++. |+|++.+|..|+||||+|..      ..+++++|+++ |+.
T Consensus       233 ~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~------~~~~~~~Ll~~~~a~  279 (285)
T 3d9h_A          233 ASEELACLLMDF-GADTQAKNAEGKRPVELVPP------ESPLAQLFLEREGAS  279 (285)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSCT------TSHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHC-CCCCCCcCCCCCCHHHHhcC------ccHHHHHHHHhhccC
Confidence            999999999994 99999999999999999983      45788888887 543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.2e-39  Score=334.85  Aligned_cols=271  Identities=27%  Similarity=0.293  Sum_probs=178.7

Q ss_pred             ccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHH
Q 007741           69 VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNEL  148 (591)
Q Consensus        69 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~L  148 (591)
                      ..+..+.++||.||+.|+.+.++.++...                     +..++..|..|.||||+|+..|+.++|++|
T Consensus        19 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~---------------------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   77 (351)
T 3utm_A           19 LTGEYKKDELLEAARSGNEEKLMALLTPL---------------------NVNCHASDGRKSTPLHLAAGYNRVRIVQLL   77 (351)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHCCTT---------------------TTTCCCSSTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             eeccccchhHHHHHHcCCHHHHHHHHHhc---------------------CCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34556779999999999999999999753                     556788899999999999999999999999


Q ss_pred             HhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceec
Q 007741          149 LKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS  228 (591)
Q Consensus       149 l~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~  228 (591)
                      +++|.+  ++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++++ ...+..
T Consensus        78 l~~g~~--~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~  153 (351)
T 3utm_A           78 LQHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHG-ADPTLV  153 (351)
T ss_dssp             HHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             HHcCCC--CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCccc
Confidence            998755  5778889999999999999999999999999998 567889999999999999999999999984 444555


Q ss_pred             CCCCCcHHHHH---------------------HHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhC---CCHHHHHH
Q 007741          229 RSNGKNALHFA---------------------ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG---QSCEVVKL  284 (591)
Q Consensus       229 ~~~g~tpLh~A---------------------~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~---~~~~~v~~  284 (591)
                      +..|.+|++.|                     +..++.+.+..++...... ...+..|.||||+|+..   ++.+++++
T Consensus       154 ~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~  232 (351)
T 3utm_A          154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAEL  232 (351)
T ss_dssp             CTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHH
T ss_pred             cCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHH
Confidence            55554444332                     2233333333333332221 22334444444444444   23444444


Q ss_pred             HHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCccc
Q 007741          285 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  364 (591)
Q Consensus       285 Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  364 (591)
                      |++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..+    +.+++++|+++|++.
T Consensus       233 Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~----~~~~v~~Ll~~gad~  306 (351)
T 3utm_A          233 LLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAG----HLQTCRLLLSYGSDP  306 (351)
T ss_dssp             HHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHT----CHHHHHHHHHTTCCT
T ss_pred             HHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcC----cHHHHHHHHHcCCCC
Confidence            4444444 44444444444444444444444444444 24444444444444444444444    444444444444444


Q ss_pred             ccccCCc
Q 007741          365 ANELNQP  371 (591)
Q Consensus       365 ~~~~~~~  371 (591)
                      .......
T Consensus       307 ~~~~~~g  313 (351)
T 3utm_A          307 SIISLQG  313 (351)
T ss_dssp             TCCCTTS
T ss_pred             CCcCCCC
Confidence            4333333

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.2e-40  Score=344.46  Aligned_cols=264  Identities=23%  Similarity=0.275  Sum_probs=227.7

Q ss_pred             hccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccC-CCCCcHHHHHHHhCcHHHHH
Q 007741           68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVN-ELGETALFTAADKGHIEVVN  146 (591)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-~~g~TpL~~Aa~~g~~~~v~  146 (591)
                      ...+..|.||||.|+..|+ ++++.|+                        ...++..| ..|.||||+|+..|+.++++
T Consensus        88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~------------------------~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~  142 (373)
T 2fo1_E           88 TEPEPESPIKLHTEAAGSY-AITEPIT------------------------RESVNIIDPRHNRTVLHWIASNSSAEKSE  142 (373)
T ss_dssp             ------CCCHHHHHHHSSS-CCCSCCS------------------------TTTTTTCCCSSCCCHHHHHHCTTCCSCCT
T ss_pred             cCCCCCCccHHHHHhcCCc-hHHHHhc------------------------cccccccCCcCCCCHHHHHHHCCCHHHHH
Confidence            3567889999999999554 5665554                        23467777 78999999999999999888


Q ss_pred             HHH--------hcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 007741          147 ELL--------KYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL  218 (591)
Q Consensus       147 ~Ll--------~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL  218 (591)
                      +|+        +.|.  +++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+
T Consensus       143 ~Ll~~~~~~ll~~ga--~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll  219 (373)
T 2fo1_E          143 DLIVHEAKECIAAGA--DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYML  219 (373)
T ss_dssp             THHHHHHHHHHHTCC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCC--CCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            887        5554  46778999999999999999999999999999998 577889999999999999999999999


Q ss_pred             hcCC--CcceecCCCCCcHHHHHHHcC---CHHHHHHHHhcCccccc-------ccCCCCCcHHHHHHhCCCHHHHHHHH
Q 007741          219 SKDG--GLLEISRSNGKNALHFAARQG---HVDVVKALLSKDPQLAR-------RTDKKGQTALHMAVKGQSCEVVKLLL  286 (591)
Q Consensus       219 ~~~~--~~~~~~~~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~v~~Ll  286 (591)
                      +++.  ..++..|.+|.||||+|+..+   +.+++++|++.|+++..       ..|..|+||||+|+..|+.+++++|+
T Consensus       220 ~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  299 (373)
T 2fo1_E          220 NSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV  299 (373)
T ss_dssp             TSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH
T ss_pred             hcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHH
Confidence            8742  456778999999999999998   89999999999988732       25779999999999999999999999


Q ss_pred             HcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCccc
Q 007741          287 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  364 (591)
Q Consensus       287 ~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  364 (591)
                      +.+...++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+..+    +.+++++|.++++.+
T Consensus       300 ~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~l~~A~~~g----~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          300 GEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANN----HHNIVDIFDRCRPER  372 (373)
T ss_dssp             HHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTT----CHHHHHHHHTTC---
T ss_pred             HhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccCCCCCCCCHHHHHHHcC----CHHHHHHHHhcCccc
Confidence            987444899999999999999999999999999994 9999999999999999999999    899999999998753

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.5e-39  Score=316.79  Aligned_cols=232  Identities=22%  Similarity=0.250  Sum_probs=183.5

Q ss_pred             ccccCCCCCcHHHHHHHhC-------------cHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCC
Q 007741          122 VNEVNELGETALFTAADKG-------------HIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP  188 (591)
Q Consensus       122 ~~~~n~~g~TpL~~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~  188 (591)
                      +|.+|.+|.||||+|+..|             +.+++++|++.+.+.+ ...|..|.||||+|+..|+.+++++|+++|+
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            6788999999999999988             8999999999876532 4468899999999999999999999999999


Q ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCc
Q 007741          189 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT  268 (591)
Q Consensus       189 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  268 (591)
                      ++ +..+..|.||||+|+..|+.+++++|++++...++..+..|.||||+|+..|+.+++++|++.|+++ +..|..|+|
T Consensus        82 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t  159 (253)
T 1yyh_A           82 DA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKS  159 (253)
T ss_dssp             CT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCB
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCC
Confidence            98 6678899999999999999999999999977788889999999999999999999999999999998 677999999


Q ss_pred             HHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCCh
Q 007741          269 ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSE  348 (591)
Q Consensus       269 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~  348 (591)
                      |||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||+|+|++.+   
T Consensus       160 ~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~g---  234 (253)
T 1yyh_A          160 ALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERM---  234 (253)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTT---
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccCCCCHHHHHHHcC---
Confidence            99999999999999999999998 889999999999999999999999999995 9999999999999999999999   


Q ss_pred             hhHHHHHHHHhcCc
Q 007741          349 EASEIKDCLARCGA  362 (591)
Q Consensus       349 ~~~~i~~~L~~~ga  362 (591)
                       +.+|+++|.....
T Consensus       235 -~~~i~~~l~~~~~  247 (253)
T 1yyh_A          235 -HHDIVRLLDLEHH  247 (253)
T ss_dssp             -CHHHHHHHHC---
T ss_pred             -CHHHHHHHHHHhh
Confidence             8999998876543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.2e-39  Score=337.83  Aligned_cols=263  Identities=18%  Similarity=0.176  Sum_probs=227.2

Q ss_pred             hhccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHH
Q 007741           67 KQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVN  146 (591)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~  146 (591)
                      ....|.+|.||||+||..|+.++|++|++.                      +..++..|..|.||||+|+..|+.++|+
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~----------------------g~~~~~~d~~g~t~L~~A~~~g~~~~v~   70 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIET----------------------GVSPTIQNRFGCTALHLACKFGCVDTAK   70 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHT----------------------TCCTTCCCTTCCCHHHHHHHHCCHHHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHc----------------------CCCccccCCCCCcHHHHHHHcCCHHHHH
Confidence            344577888999999999999999999986                      6678899999999999999999999999


Q ss_pred             HHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhC----CCCCcc----------------cCCCCCCCHHHHHH
Q 007741          147 ELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH----DPSLSQ----------------TTGPSNATPLVSAA  206 (591)
Q Consensus       147 ~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~----~~~~~~----------------~~~~~g~tpL~~A~  206 (591)
                      +|+++++.    ..+..|.||||+|+..|+.+++++|+++    +.++..                ..+..|.||||+|+
T Consensus        71 ~Ll~~g~~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  146 (364)
T 3ljn_A           71 YLASVGEV----HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCV  146 (364)
T ss_dssp             HHHHHCCC----CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHH
T ss_pred             HHHHCCCC----ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHH
Confidence            99998863    2335799999999999999999999998    655421                16678999999999


Q ss_pred             HcC--CHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcc-----cccccCCCCCcHHHHHHhCCCH
Q 007741          207 TRG--HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ-----LARRTDKKGQTALHMAVKGQSC  279 (591)
Q Consensus       207 ~~g--~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~-----~~~~~d~~g~t~Lh~A~~~~~~  279 (591)
                      ..|  +.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++.+++     + +..|..|+||||+|+..|+.
T Consensus       147 ~~g~~~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~~  224 (364)
T 3ljn_A          147 GLGPEYLEMIKILVQL-GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINWE  224 (364)
T ss_dssp             HSCGGGHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTCH
T ss_pred             HcCCchHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCCH
Confidence            999  99999999999 667788899999999999999999999999999988     5 77799999999999999999


Q ss_pred             HHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCccc------------ccCCCCCHHHHHhhCCCC
Q 007741          280 EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA------------LTRDHKTALDIAEGLPSS  347 (591)
Q Consensus       280 ~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~------------~d~~G~t~L~~A~~~~~~  347 (591)
                      +++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++ |++++.            .+..|.||++.|+..+  
T Consensus       225 ~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~--  300 (364)
T 3ljn_A          225 DVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP--  300 (364)
T ss_dssp             HHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCH--
T ss_pred             HHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccccccchhhhhcc--
Confidence            999999999998 899999999999999999999999999995 665433            5678889998888776  


Q ss_pred             hhhHHHHHHHHhcCcc
Q 007741          348 EEASEIKDCLARCGAV  363 (591)
Q Consensus       348 ~~~~~i~~~L~~~ga~  363 (591)
                        ..+.+..|+..+.+
T Consensus       301 --~~~~v~~ll~~~~~  314 (364)
T 3ljn_A          301 --SKQEVLQLLQEKLD  314 (364)
T ss_dssp             --HHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHH
Confidence              45555445544443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.7e-38  Score=305.15  Aligned_cols=231  Identities=25%  Similarity=0.340  Sum_probs=211.2

Q ss_pred             ccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCH
Q 007741          122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP  201 (591)
Q Consensus       122 ~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp  201 (591)
                      ++..|..|.||||+|+..|+.+++++|+++|.+  ++..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~   80 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN--IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTC   80 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC--cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcH
Confidence            677899999999999999999999999998754  5678889999999999999999999999999987 5678899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHH
Q 007741          202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV  281 (591)
Q Consensus       202 L~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~  281 (591)
                      ||+|+..|+.+++++|+++++..++..+..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.++
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~  159 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDI  159 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHH
Confidence            999999999999999999977788888999999999999999999999999999998 6779999999999999999999


Q ss_pred             HHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHH
Q 007741          282 VKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA  358 (591)
Q Consensus       282 v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~  358 (591)
                      +++|++.|++ ++.+|..|+||||+|++.|+.+++++|+++ |++++.+|..|+||||+|+..+......++.+.|.
T Consensus       160 ~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~  234 (237)
T 3b7b_A          160 AEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ  234 (237)
T ss_dssp             HHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999998 888999999999999999999999999994 99999999999999999999884333334444443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=7.5e-39  Score=318.90  Aligned_cols=255  Identities=23%  Similarity=0.216  Sum_probs=192.5

Q ss_pred             hccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHH
Q 007741           68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNE  147 (591)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~  147 (591)
                      ...|.+|.||||+|++.|+.+++++|++....                   ...++.+|..|.||||+|+..|+.++|++
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------------------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~   63 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAG-------------------HEYLDLQNDLGQTALHLAAILGEASTVEK   63 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTT-------------------SGGGGCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-------------------cccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            34688999999999999999999999975210                   22378899999999999999999999999


Q ss_pred             HHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcc------------cCCCCCCCHHHHHHHcCCHHHHH
Q 007741          148 LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ------------TTGPSNATPLVSAATRGHTAVVN  215 (591)
Q Consensus       148 Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~------------~~~~~g~tpL~~A~~~g~~~~v~  215 (591)
                      |+++|++  ++..+..|.||||+|+..|+.+++++|++++++...            .....+.++++.++..+......
T Consensus        64 Ll~~ga~--~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (282)
T 1oy3_D           64 LYAAGAG--VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE  141 (282)
T ss_dssp             HHHTTCC--SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------
T ss_pred             HHHcCCC--CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhh
Confidence            9998765  567888999999999999999999999999876422            12234567777777766665555


Q ss_pred             HHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccC
Q 007741          216 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML  295 (591)
Q Consensus       216 ~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~  295 (591)
                      .++...+..++..+..|.||||+|+..|+.+++++|+++|+++....+..|+||||+|+..|+.+++++|+++|++ ++.
T Consensus       142 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~  220 (282)
T 1oy3_D          142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTA  220 (282)
T ss_dssp             --CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTC
T ss_pred             hhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-Ccc
Confidence            5555556667788999999999999999999999999999998544335699999999999999999999999998 899


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 007741          296 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLP  345 (591)
Q Consensus       296 ~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~  345 (591)
                      +|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|....
T Consensus       221 ~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          221 RMYGGRTPLGSALLRPNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             CCTTSCCHHHHHHTSSCHHHHHHHHH-TTCCCCCCC--------------
T ss_pred             cccCCCCHHHHHHHcCCcHHHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence            99999999999999999999999999 59999999999999999998654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.5e-38  Score=306.63  Aligned_cols=234  Identities=24%  Similarity=0.275  Sum_probs=204.2

Q ss_pred             ccccCCCCCcHHHHHHHhCcHHHHHHHHhc--CCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCC
Q 007741          122 VNEVNELGETALFTAADKGHIEVVNELLKY--STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA  199 (591)
Q Consensus       122 ~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~--~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~  199 (591)
                      ++.+|.+|.||||+|+..|+.+++++|++.  ..+.+++..|..|.||||+|+..|+.+++++|+++|+++ ...+..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~   80 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQ   80 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCC
Confidence            467799999999999999999999999972  123456778899999999999999999999999999987 56788999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCC---cceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhC
Q 007741          200 TPLVSAATRGHTAVVNELLSKDGG---LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG  276 (591)
Q Consensus       200 tpL~~A~~~g~~~~v~~LL~~~~~---~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  276 (591)
                      ||||+|+..|+.+++++|++.+..   .++..+..|.||||+|+..|+.+++++|++.++++....+..|.||||+|+..
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  160 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN  160 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHc
Confidence            999999999999999999998642   56778899999999999999999999999999998444338899999999999


Q ss_pred             CCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHH
Q 007741          277 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDC  356 (591)
Q Consensus       277 ~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~  356 (591)
                      |+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..+    ..++++.
T Consensus       161 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~----~~~i~~~  234 (241)
T 1k1a_A          161 NSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRR----VIDILRG  234 (241)
T ss_dssp             TCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHH----HHHHHTC
T ss_pred             CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcC----cHHHHhh
Confidence            999999999999998 88999999999999999999999999999 59999999999999999999877    8888887


Q ss_pred             HHhcCc
Q 007741          357 LARCGA  362 (591)
Q Consensus       357 L~~~ga  362 (591)
                      |.+.++
T Consensus       235 l~~~~a  240 (241)
T 1k1a_A          235 KATRPA  240 (241)
T ss_dssp             ------
T ss_pred             hccCCC
Confidence            776553

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5e-38  Score=308.51  Aligned_cols=228  Identities=25%  Similarity=0.332  Sum_probs=181.3

Q ss_pred             hccCCCCCcHhHHHHHcC-------------CHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccc-cccCCCCCcHH
Q 007741           68 QVTGRHNDTELHLAAQRG-------------DLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVV-NEVNELGETAL  133 (591)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~n~~g~TpL  133 (591)
                      +.+|.+|.||||.|+..|             +.++++.|++.                      +..+ +..|..|.|||
T Consensus         4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~----------------------g~~~~~~~d~~g~t~L   61 (253)
T 1yyh_A            4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ----------------------GASLHNQTDRTGETAL   61 (253)
T ss_dssp             ----------------------------------------------------------------------CCCTTSCCHH
T ss_pred             CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc----------------------cCCcccccCCCCCcHH
Confidence            456889999999999988             89999999976                      3334 45689999999


Q ss_pred             HHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHH
Q 007741          134 FTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAV  213 (591)
Q Consensus       134 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  213 (591)
                      |+|+..|+.++|++|+++|.+  ++..|..|.||||+|+..|+.+++++|+++++......+..|.||||+|+..|+.++
T Consensus        62 ~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  139 (253)
T 1yyh_A           62 HLAARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM  139 (253)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHH
Confidence            999999999999999998755  567889999999999999999999999999985557788999999999999999999


Q ss_pred             HHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccc
Q 007741          214 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV  293 (591)
Q Consensus       214 v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~  293 (591)
                      +++|+++ +.+++..|..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++ +
T Consensus       140 v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~  216 (253)
T 1yyh_A          140 LEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-R  216 (253)
T ss_dssp             HHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-T
T ss_pred             HHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-c
Confidence            9999997 5667888999999999999999999999999999998 67799999999999999999999999999998 8


Q ss_pred             cCCCCCCCcHHHHHHHcCcHHHHHHHhcC
Q 007741          294 MLPDKFGNTALHVATRKKRTEIVTELLSL  322 (591)
Q Consensus       294 ~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~  322 (591)
                      +.+|..|+||||+|+++|+.+++++|...
T Consensus       217 ~~~d~~g~tpl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          217 DITDHMDRLPRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            89999999999999999999999999875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.4e-37  Score=306.04  Aligned_cols=235  Identities=24%  Similarity=0.267  Sum_probs=217.2

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHh
Q 007741           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLK  150 (591)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~  150 (591)
                      +..|.||||.|+..|+.+++++|++.                      +..++..|..|.||||+|+..|+.+++++|++
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   93 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRH----------------------GADPVLRKKNGATPFLLAAIAGSVKLLKLFLS   93 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHT----------------------TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHc----------------------CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            67789999999999999999999986                      66678889999999999999999999999999


Q ss_pred             cCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccC---------CCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 007741          151 YSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT---------GPSNATPLVSAATRGHTAVVNELLSKD  221 (591)
Q Consensus       151 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~---------~~~g~tpL~~A~~~g~~~~v~~LL~~~  221 (591)
                      ++.+  ++..+..|.||||+|+..|+.+++++|+++++++....         +..|.||||+|+..|+.+++++|+++.
T Consensus        94 ~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  171 (285)
T 1wdy_A           94 KGAD--VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM  171 (285)
T ss_dssp             TTCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS
T ss_pred             cCCC--CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhc
Confidence            8755  56788899999999999999999999999999874332         678999999999999999999999987


Q ss_pred             CCcceecCCCCCcHHHHHHHcCC----HHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHH-cCcccccCC
Q 007741          222 GGLLEISRSNGKNALHFAARQGH----VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE-ADAAIVMLP  296 (591)
Q Consensus       222 ~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~-~~~~~~~~~  296 (591)
                      +..++..|..|.||||+|+..++    .+++++|++.|+++ +..|..|+||||+|+..|+.+++++|++ .|.+ ++.+
T Consensus       172 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~  249 (285)
T 1wdy_A          172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDT  249 (285)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCC
T ss_pred             CCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-cccc
Confidence            77888899999999999999999    99999999999998 6779999999999999999999999999 6766 8999


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccC
Q 007741          297 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTR  332 (591)
Q Consensus       297 d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~  332 (591)
                      |..|+||||+|++.|+.+++++|++ .|++++.+|.
T Consensus       250 ~~~g~t~l~~A~~~~~~~i~~~Ll~-~Ga~~~~~d~  284 (285)
T 1wdy_A          250 DSDGKTALLLAVELKLKKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHH-HSSCSCCSSC
T ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCCcccc
Confidence            9999999999999999999999999 5999998874

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.6e-37  Score=297.04  Aligned_cols=227  Identities=28%  Similarity=0.402  Sum_probs=208.4

Q ss_pred             hccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHH
Q 007741           68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNE  147 (591)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~  147 (591)
                      +..+.+|.||||.|+..|+.+++++|++.                      +..++..|..|.||||+|+..|+.+++++
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~   62 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQA----------------------GANIDTCSEDQRTPLMEAAENNHLEAVKY   62 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHT----------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHc----------------------CCCcCccCCCCCCHHHHHHHhCCHHHHHH
Confidence            45688999999999999999999999986                      66688889999999999999999999999


Q ss_pred             HHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccee
Q 007741          148 LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI  227 (591)
Q Consensus       148 Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~  227 (591)
                      |++++..  ++..+..|.||||+|+..|+.+++++|+++++...+..+..|.||||+|+..|+.+++++|+++ +..++.
T Consensus        63 Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~  139 (237)
T 3b7b_A           63 LIKAGAL--VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINI  139 (237)
T ss_dssp             HHTTTCC--CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTC
T ss_pred             HHhCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCc
Confidence            9998755  5677889999999999999999999999999655577888999999999999999999999998 556778


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 007741          228 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA  307 (591)
Q Consensus       228 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A  307 (591)
                      .+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..++.+++++|+++|++ ++.+|.+|+||||+|
T Consensus       140 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A  217 (237)
T 3b7b_A          140 RDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCA  217 (237)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHS
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC-CCccCCCCCCHHHHH
Confidence            8999999999999999999999999999998 66799999999999999999999999999998 889999999999999


Q ss_pred             HHcCcHHHHHHHhc
Q 007741          308 TRKKRTEIVTELLS  321 (591)
Q Consensus       308 ~~~g~~~iv~~Ll~  321 (591)
                      +..|+.+.+..+++
T Consensus       218 ~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          218 SLNSQVWSALQMSK  231 (237)
T ss_dssp             CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999976666654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.3e-37  Score=302.65  Aligned_cols=230  Identities=22%  Similarity=0.268  Sum_probs=203.1

Q ss_pred             ccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHH
Q 007741           69 VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNEL  148 (591)
Q Consensus        69 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~L  148 (591)
                      ..|.+|.||||.|+..|+.+++++|++...                  ..+..++..|..|.||||+|+..|+.+++++|
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~------------------~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   65 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQ------------------QGGRELDIYNNLRQTPLHLAVITTLPSVVRLL   65 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHH------------------HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHH------------------hcCCCCCcccccCCCHHHHHHHcCCHHHHHHH
Confidence            468899999999999999999999996210                  01567888999999999999999999999999


Q ss_pred             HhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCC----CCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc
Q 007741          149 LKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP----SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL  224 (591)
Q Consensus       149 l~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~----~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~  224 (591)
                      +++|.+  ++..+..|.||||+|+..|+.+++++|++.++    ++ ...+..|.||||+|+..|+.+++++|++++ .+
T Consensus        66 l~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~  141 (241)
T 1k1a_A           66 VTAGAS--PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERG-AD  141 (241)
T ss_dssp             HHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CC
T ss_pred             HHcCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcC-CC
Confidence            998755  56778899999999999999999999999987    44 567889999999999999999999999985 44


Q ss_pred             ceecC-CCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcH
Q 007741          225 LEISR-SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA  303 (591)
Q Consensus       225 ~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~  303 (591)
                      ++..+ ..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||
T Consensus       142 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tp  219 (241)
T 1k1a_A          142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTP  219 (241)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCT
T ss_pred             cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCH
Confidence            55555 78999999999999999999999999998 67799999999999999999999999999998 88999999999


Q ss_pred             HHHHHHcCcHHHHHHHhcC
Q 007741          304 LHVATRKKRTEIVTELLSL  322 (591)
Q Consensus       304 Lh~A~~~g~~~iv~~Ll~~  322 (591)
                      ||+|+..|+.++++.|++.
T Consensus       220 l~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          220 LMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             TTTCSSHHHHHHHTC----
T ss_pred             HHHHHhcCcHHHHhhhccC
Confidence            9999999999999999874

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.1e-37  Score=296.07  Aligned_cols=228  Identities=25%  Similarity=0.328  Sum_probs=211.0

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHH
Q 007741          126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  205 (591)
Q Consensus       126 n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  205 (591)
                      +..+.||||.|+..|+.+.+++|++.+.. ..+..+..|.||||+|+..|+.+++++|+++++++ +..+..|.||||+|
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   80 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA   80 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHH
Confidence            45688999999999999999999997543 35778889999999999999999999999999987 66788999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHH
Q 007741          206 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  285 (591)
Q Consensus       206 ~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  285 (591)
                      +..|+.+++++|+++ +..++..+..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L  158 (231)
T 3aji_A           81 ASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHIL  158 (231)
T ss_dssp             HHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHcCHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            999999999999998 5567788999999999999999999999999999998 67799999999999999999999999


Q ss_pred             HHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcc
Q 007741          286 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  363 (591)
Q Consensus       286 l~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~  363 (591)
                      +++|++ ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||+|+|...+    ..++.++|.++|+.
T Consensus       159 l~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~----~~~i~~lL~~~~a~  230 (231)
T 3aji_A          159 LFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVAKGGL----GLILKRLAEGEEAS  230 (231)
T ss_dssp             HHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHSCHHH----HHHHHHHHHHHHHC
T ss_pred             HhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHhhH----HHHHHHHHcccccc
Confidence            999998 888999999999999999999999999995 9999999999999999998877    88999999988764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.8e-37  Score=296.81  Aligned_cols=225  Identities=27%  Similarity=0.353  Sum_probs=207.8

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHh
Q 007741           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLK  150 (591)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~  150 (591)
                      +..+++|||.|++.|+.+.++.+++..                     +...+..|..|.||||+|+..|+.+++++|++
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~---------------------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~   61 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILAD---------------------KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ   61 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHC---------------------GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhc---------------------hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            456789999999999999999999753                     44578889999999999999999999999999


Q ss_pred             cCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCC
Q 007741          151 YSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS  230 (591)
Q Consensus       151 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~  230 (591)
                      ++.+  ++..|..|.||||+|+..|+.+++++|+++++++ +..+..|.||||+|+..|+.+++++|+++ +..++..+.
T Consensus        62 ~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~  137 (231)
T 3aji_A           62 LGVP--VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDH  137 (231)
T ss_dssp             TTCC--SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT
T ss_pred             hCCC--CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCC
Confidence            8754  5778889999999999999999999999999998 66788999999999999999999999988 556777899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc
Q 007741          231 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  310 (591)
Q Consensus       231 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~  310 (591)
                      .|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..
T Consensus       138 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~  215 (231)
T 3aji_A          138 YDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGG  215 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhh
Confidence            9999999999999999999999999998 67799999999999999999999999999998 789999999999999999


Q ss_pred             CcHHHHHHHhcC
Q 007741          311 KRTEIVTELLSL  322 (591)
Q Consensus       311 g~~~iv~~Ll~~  322 (591)
                      ++.+++++|+++
T Consensus       216 ~~~~i~~lL~~~  227 (231)
T 3aji_A          216 LGLILKRLAEGE  227 (231)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHccc
Confidence            999999999873

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.5e-37  Score=320.29  Aligned_cols=235  Identities=21%  Similarity=0.243  Sum_probs=209.8

Q ss_pred             cccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCC
Q 007741          119 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN  198 (591)
Q Consensus       119 ~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g  198 (591)
                      +...+..|..|.||||+||..|+.++|++|+++|.+  ++..|..|.||||+|+..|+.+++++|++++++..   +..|
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g   84 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS--PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHG   84 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTT
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCC
Confidence            455677899999999999999999999999998754  67789999999999999999999999999999653   3578


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcC---CCccee-----------------cCCCCCcHHHHHHHcC--CHHHHHHHHhcCc
Q 007741          199 ATPLVSAATRGHTAVVNELLSKD---GGLLEI-----------------SRSNGKNALHFAARQG--HVDVVKALLSKDP  256 (591)
Q Consensus       199 ~tpL~~A~~~g~~~~v~~LL~~~---~~~~~~-----------------~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~  256 (591)
                      .||||+|+..|+.+++++|+++.   +...+.                 .|..|.||||+|+..|  +.+++++|++.|+
T Consensus        85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga  164 (364)
T 3ljn_A           85 QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA  164 (364)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            99999999999999999999872   222333                 7789999999999999  9999999999999


Q ss_pred             ccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCccc----ccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccC
Q 007741          257 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI----VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTR  332 (591)
Q Consensus       257 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~----~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~  332 (591)
                      ++ +..|..|+||||+|+..|+.+++++|+++|++.    ++.+|..|+||||+|+..|+.+++++|++ .|+|++.+|.
T Consensus       165 ~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~~d~  242 (364)
T 3ljn_A          165 SP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNMEDN  242 (364)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTCCCT
T ss_pred             CC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCC
Confidence            98 677999999999999999999999999998763    78889999999999999999999999999 5999999999


Q ss_pred             CCCCHHHHHhhCCCChhhHHHHHHHHhcCccc
Q 007741          333 DHKTALDIAEGLPSSEEASEIKDCLARCGAVR  364 (591)
Q Consensus       333 ~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  364 (591)
                      .|+||||+|+..+    +.+++++|++.|+..
T Consensus       243 ~g~tpL~~A~~~g----~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          243 EHTVPLYLSVRAA----MVLLTKELLQKTDVF  270 (364)
T ss_dssp             TSCCHHHHHHHTC----CHHHHHHHHHHSCHH
T ss_pred             CCCCHHHHHHHhC----hHHHHHHHHHcCCch
Confidence            9999999999999    899999999998764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.7e-37  Score=306.53  Aligned_cols=229  Identities=24%  Similarity=0.303  Sum_probs=205.3

Q ss_pred             ccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHH
Q 007741           69 VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNEL  148 (591)
Q Consensus        69 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~L  148 (591)
                      ..+.+|.||||.||..|+.+++++|++.                      +..++.+|..|.||||+|+..|+.+++++|
T Consensus        54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~----------------------g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  111 (285)
T 3d9h_A           54 GDAVSDWSPMHEAAIHGHQLSLRNLISQ----------------------GWAVNIITADHVSPLHEACLGGHLSCVKIL  111 (285)
T ss_dssp             SSSCCSCCHHHHHHHTTCHHHHHHHHHT----------------------TCCSCEECTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCccCCCHHHHHHHcCCHHHHHHHHHC----------------------CCCCCCcCCCCCCHHHHHHHCCcHHHHHHH
Confidence            3678899999999999999999999986                      666889999999999999999999999999


Q ss_pred             HhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceec
Q 007741          149 LKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS  228 (591)
Q Consensus       149 l~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~  228 (591)
                      ++++++  ++..|..|.||||+|+..|+.+++++|+++++++..  +..|.||||+|+..|+.+++++|+++ +.+++..
T Consensus       112 l~~ga~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~  186 (285)
T 3d9h_A          112 LKHGAQ--VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAY-GGNIDHK  186 (285)
T ss_dssp             HHTTCC--SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred             HHCCCC--CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCc
Confidence            998654  577889999999999999999999999999998743  44599999999999999999999998 5567888


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 007741          229 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  308 (591)
Q Consensus       229 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~  308 (591)
                      |..|.||||+|+..|+.+++++|++.|+++.  .|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+
T Consensus       187 d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          187 ISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVELVP  263 (285)
T ss_dssp             BTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSC
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHhc
Confidence            9999999999999999999999999999984  388999999999999999999999999998 8999999999999999


Q ss_pred             HcCcHHHHHHHhcCCCCCccc
Q 007741          309 RKKRTEIVTELLSLPDTNVNA  329 (591)
Q Consensus       309 ~~g~~~iv~~Ll~~~g~d~~~  329 (591)
                        ++.+++++|+++.|+++..
T Consensus       264 --~~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          264 --PESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             --TTSHHHHHHHHHC------
T ss_pred             --CccHHHHHHHHhhccCCCC
Confidence              5579999999976777643

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=8.1e-37  Score=294.44  Aligned_cols=222  Identities=24%  Similarity=0.257  Sum_probs=198.7

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCC--CCCcccCCCCCCCHHHHHH
Q 007741          129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD--PSLSQTTGPSNATPLVSAA  206 (591)
Q Consensus       129 g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~  206 (591)
                      |+||||.|+..|+.+++++|++.+... ....|..|.||||+|+..|+.+++++|++++  +++....+..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            789999999999999999999987543 3557889999999999999999999999999  5554447889999999999


Q ss_pred             HcCCHHHHHHHHhcC-CCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHH
Q 007741          207 TRGHTAVVNELLSKD-GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  285 (591)
Q Consensus       207 ~~g~~~~v~~LL~~~-~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  285 (591)
                      ..|+.+++++|++++ ..+++..+..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999985 2667778999999999999999999999999999998 67799999999999999999999999


Q ss_pred             HHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHh
Q 007741          286 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR  359 (591)
Q Consensus       286 l~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~  359 (591)
                      ++.|...++.+|..|+||||+|+..|+.+++++|++..|+|++.+|..|+||+|+|.+.+       +.++|.+
T Consensus       160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~-------~~~~l~~  226 (228)
T 2dzn_A          160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ-------VKKFFLN  226 (228)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT-------HHHHHHT
T ss_pred             HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH-------HHHHHHh
Confidence            999944489999999999999999999999999994369999999999999999997543       5555554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.2e-36  Score=289.47  Aligned_cols=220  Identities=24%  Similarity=0.291  Sum_probs=197.9

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCC
Q 007741           74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYST  153 (591)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~  153 (591)
                      |+||||.|++.|+.++++.|++..                     ....+..|..|.||||+|+..|+.+++++|+++++
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~---------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~   60 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSK---------------------PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME   60 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHC---------------------GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCT
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcC---------------------ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence            679999999999999999999763                     33355689999999999999999999999999987


Q ss_pred             CccCcc-CCCCCChHHHHHHHhCcHHHHHHHHhCC--CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCC
Q 007741          154 KEGLTR-KNRSGFDPLHIAAVQGHHAIVQVLLDHD--PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS  230 (591)
Q Consensus       154 ~~~~~~-~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~  230 (591)
                      +.++.. .+..|.||||+|+..|+.+++++|++++  +++ +..+..|.||||+|+..|+.+++++|+++ +.+++..|.
T Consensus        61 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~  138 (228)
T 2dzn_A           61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDK  138 (228)
T ss_dssp             TCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCT
T ss_pred             cccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCC
Confidence            666666 8889999999999999999999999998  665 66788999999999999999999999998 666888899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCcHHHHHHhCCCHHHHHHHH-HcCcccccCCCCCCCcHHHHHH
Q 007741          231 NGKNALHFAARQGHVDVVKALLSKD-PQLARRTDKKGQTALHMAVKGQSCEVVKLLL-EADAAIVMLPDKFGNTALHVAT  308 (591)
Q Consensus       231 ~g~tpLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll-~~~~~~~~~~d~~g~T~Lh~A~  308 (591)
                      .|.||||+|+..|+.+++++|++.+ .++ +..|..|+||||+|+..|+.+++++|+ +.|++ ++.+|.+|.||||+|+
T Consensus       139 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          139 FNQIPLHRAASVGSLKLIELLCGLGKSAV-NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVAL  216 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTTTCCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCBCTTSCBGGGGCS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCcccc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCcHHHHHH
Confidence            9999999999999999999999999 555 778999999999999999999999999 88888 8899999999999997


Q ss_pred             HcCcHHHHHHHhc
Q 007741          309 RKKRTEIVTELLS  321 (591)
Q Consensus       309 ~~g~~~iv~~Ll~  321 (591)
                      ..   +++++|++
T Consensus       217 ~~---~~~~~l~~  226 (228)
T 2dzn_A          217 NE---QVKKFFLN  226 (228)
T ss_dssp             ST---THHHHHHT
T ss_pred             HH---HHHHHHHh
Confidence            65   45556655

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-37  Score=304.05  Aligned_cols=217  Identities=27%  Similarity=0.365  Sum_probs=172.1

Q ss_pred             ccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCc------cCccCCCCCChHHHHHHHhCcH-HHHHHHHhCCCCCcccCCC
Q 007741          124 EVNELGETALFTAADKGHIEVVNELLKYSTKE------GLTRKNRSGFDPLHIAAVQGHH-AIVQVLLDHDPSLSQTTGP  196 (591)
Q Consensus       124 ~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~------~~~~~~~~g~t~Lh~A~~~g~~-~iv~~Ll~~~~~~~~~~~~  196 (591)
                      ..|..+.+||+.||..|+.++|++||+.+...      .++..+..|.||||.|+..++. .+++.|++.|+++ +..|.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~   84 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQ   84 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCC
Confidence            34667789999999999999999999987543      2455677899999999988876 4889999999998 67889


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhC
Q 007741          197 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG  276 (591)
Q Consensus       197 ~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  276 (591)
                      +|.||||+|+..|+.+++++|++. +.+++..+.+|.||+|.|+..++.+++++|++.|+++ +..|..|+||||+|+..
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~-~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhc-CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHC
Confidence            999999999999999999999988 5567788999999999999999999999999999998 67799999999999999


Q ss_pred             CCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 007741          277 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLP  345 (591)
Q Consensus       277 ~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~  345 (591)
                      |+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|+|++.+|..|+||||+|++.+
T Consensus       163 g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          163 GHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             TCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTC
T ss_pred             CCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCC
Confidence            999999999999998 89999999999999999999999999999 49999999999999999998655

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=8.7e-37  Score=317.24  Aligned_cols=257  Identities=20%  Similarity=0.210  Sum_probs=219.5

Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCC-CCCChHHHHHHHhCcHHHHHHHH--------hCCCCCccc
Q 007741          123 NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKN-RSGFDPLHIAAVQGHHAIVQVLL--------DHDPSLSQT  193 (591)
Q Consensus       123 ~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~iv~~Ll--------~~~~~~~~~  193 (591)
                      +..|..|.||||+|+..|+ +++++|++.    +++..| ..|+||||+|+..|+.+++++|+        +.|+++ +.
T Consensus        88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~----~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~  161 (373)
T 2fo1_E           88 TEPEPESPIKLHTEAAGSY-AITEPITRE----SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NA  161 (373)
T ss_dssp             ------CCCHHHHHHHSSS-CCCSCCSTT----TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TC
T ss_pred             cCCCCCCccHHHHHhcCCc-hHHHHhccc----cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cC
Confidence            3458889999999999654 788877652    355666 68999999999999998887776        788887 66


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCCcHH
Q 007741          194 TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD---PQLARRTDKKGQTAL  270 (591)
Q Consensus       194 ~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~---~~~~~~~d~~g~t~L  270 (591)
                      .|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||||+|+..|+.+++++|++.+   .++ +..|..|.|||
T Consensus       162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L  239 (373)
T 2fo1_E          162 MDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTAL  239 (373)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHH
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHH
Confidence            788999999999999999999999998 5667888999999999999999999999999987   455 66799999999


Q ss_pred             HHHHhCC---CHHHHHHHHHcCcccccC--------CCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHH
Q 007741          271 HMAVKGQ---SCEVVKLLLEADAAIVML--------PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALD  339 (591)
Q Consensus       271 h~A~~~~---~~~~v~~Ll~~~~~~~~~--------~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~  339 (591)
                      |+|+..+   +.+++++|+++|++ ++.        .|..|+||||+|+..|+.+++++|++..+++++.+|..|+||||
T Consensus       240 ~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~  318 (373)
T 2fo1_E          240 MIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM  318 (373)
T ss_dssp             HHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred             HHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHH
Confidence            9999988   89999999999987 443        67799999999999999999999998767999999999999999


Q ss_pred             HHhhCCCChhhHHHHHHHHhcCcccccccCCchHHhhhhhhhhhhhhhhHHHH
Q 007741          340 IAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ  392 (591)
Q Consensus       340 ~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  392 (591)
                      +|+..+    +.+++++|++.|++...........+..+......++.+.|.+
T Consensus       319 ~A~~~g----~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~  367 (373)
T 2fo1_E          319 LAAQEG----RIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  367 (373)
T ss_dssp             HHHHHT----CHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHcC----CHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999    8999999999999887776667777777777666666665544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=7.7e-36  Score=297.07  Aligned_cols=249  Identities=22%  Similarity=0.234  Sum_probs=192.3

Q ss_pred             ccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCcc-CccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCC
Q 007741          122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT  200 (591)
Q Consensus       122 ~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~-~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t  200 (591)
                      ++.+|..|.||||+|+..|+.++|++|++++.+.. ++..+..|+||||+|+..|+.+++++|+++|+++ +..+..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence            56789999999999999999999999999876643 6788899999999999999999999999999998 577889999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcc------------eecCCCCCcHHHHHHHcCCHHHHH-HHHhcCcccccccCCCCC
Q 007741          201 PLVSAATRGHTAVVNELLSKDGGLL------------EISRSNGKNALHFAARQGHVDVVK-ALLSKDPQLARRTDKKGQ  267 (591)
Q Consensus       201 pL~~A~~~g~~~~v~~LL~~~~~~~------------~~~~~~g~tpLh~A~~~g~~~~v~-~Ll~~~~~~~~~~d~~g~  267 (591)
                      |||+|+..|+.+++++|++++....            ......+.++++.++..+...... .+...+.++ +..|..|.
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~  159 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGH  159 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGT-TCCCTTSC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcC-CCcCCCCc
Confidence            9999999999999999998754321            122345677787777665544443 344445555 67799999


Q ss_pred             cHHHHHHhCCCHHHHHHHHHcCcccccCCCC-CCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCC
Q 007741          268 TALHMAVKGQSCEVVKLLLEADAAIVMLPDK-FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPS  346 (591)
Q Consensus       268 t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~-~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~  346 (591)
                      ||||+|+..|+.+++++|+++|++ ++.++. .|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..+ 
T Consensus       160 t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~-  236 (282)
T 1oy3_D          160 TPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRP-  236 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHTSS-
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCCHHHHHHHcC-
Confidence            999999999999999999999998 666664 599999999999999999999995 9999999999999999999999 


Q ss_pred             ChhhHHHHHHHHhcCcccccccCCchHHhhhh
Q 007741          347 SEEASEIKDCLARCGAVRANELNQPRDELRKT  378 (591)
Q Consensus       347 ~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~  378 (591)
                         +.+++++|+++|++..........++...
T Consensus       237 ---~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a  265 (282)
T 1oy3_D          237 ---NPILARLLRAHGAPEPEDGGDKLSPCSSS  265 (282)
T ss_dssp             ---CHHHHHHHHHTTCCCCCCC----------
T ss_pred             ---CcHHHHHHHHcCCCcCcCCCccccccccc
Confidence               89999999999999876666555555443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=9.6e-37  Score=306.68  Aligned_cols=238  Identities=25%  Similarity=0.303  Sum_probs=209.1

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhc
Q 007741           72 RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKY  151 (591)
Q Consensus        72 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~  151 (591)
                      ..|.||||.||..|+.++++.|++.                      +..++..|..|.||||+|+..|+.++|++|+++
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~----------------------g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~   95 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLER----------------------GADINYANVDGLTALHQACIDDNVDMVKFLVEN   95 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHH----------------------CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHc----------------------CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            3567999999999999999999986                      666888999999999999999999999999998


Q ss_pred             CCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCC
Q 007741          152 STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN  231 (591)
Q Consensus       152 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~  231 (591)
                      |++  ++..|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..|+.++++.++...+...+..+..
T Consensus        96 ga~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~  172 (299)
T 1s70_B           96 GAN--INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE  172 (299)
T ss_dssp             TCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             CCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhh
Confidence            755  5778889999999999999999999999999997 6678899999999999999999999998866655544433


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcC
Q 007741          232 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK  311 (591)
Q Consensus       232 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g  311 (591)
                      +.++++        ..+..++..+.......+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|
T Consensus       173 ~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~  243 (299)
T 1s70_B          173 EERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWG  243 (299)
T ss_dssp             HHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             hhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcC
Confidence            333333        3445566666665566788999999999999999999999999988 8899999999999999999


Q ss_pred             cHHHHHHHhcCCCCCcccccCCCCCHHHHHhhC
Q 007741          312 RTEIVTELLSLPDTNVNALTRDHKTALDIAEGL  344 (591)
Q Consensus       312 ~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~  344 (591)
                      +.+++++|++. |+|++.+|..|+||||+|.+.
T Consensus       244 ~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          244 KEEACRILVEN-LCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCTTSCCTTTSCCSG
T ss_pred             CHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHH
Confidence            99999999995 999999999999999999653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=287.74  Aligned_cols=233  Identities=26%  Similarity=0.360  Sum_probs=212.2

Q ss_pred             ccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCH
Q 007741          122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP  201 (591)
Q Consensus       122 ~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp  201 (591)
                      ++..|..|.||||.|+..|+.+++++|++.+.+  ++..+..|.||||+|+..|+.+++++|++++++.....+..|.||
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   79 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD--VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP   79 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh
Confidence            456688999999999999999999999998754  577888999999999999999999999999999877777789999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCC-HH
Q 007741          202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS-CE  280 (591)
Q Consensus       202 L~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~  280 (591)
                      ||+|+..|+.+++++|++. +..++..+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..++ .+
T Consensus        80 L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           80 LHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSST
T ss_pred             hHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHH
Confidence            9999999999999999988 5567778999999999999999999999999999988 6779999999999996555 89


Q ss_pred             HHHHHHHcCcccccCCCC-CCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHh
Q 007741          281 VVKLLLEADAAIVMLPDK-FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR  359 (591)
Q Consensus       281 ~v~~Ll~~~~~~~~~~d~-~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~  359 (591)
                      ++++|++.+++ ++..+. .|+||||+|+..|+.+++++|+++ |++++.+|..|+|||++|++.+    ..+++++|.+
T Consensus       158 ~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~----~~~~v~~L~~  231 (240)
T 3eu9_A          158 PTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRK----NVWMINHLQE  231 (240)
T ss_dssp             THHHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTT----CHHHHHHHHH
T ss_pred             HHHHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcC----cHHHHHHHHH
Confidence            99999999998 666676 899999999999999999999995 9999999999999999999999    8999999999


Q ss_pred             cCccc
Q 007741          360 CGAVR  364 (591)
Q Consensus       360 ~ga~~  364 (591)
                      .++..
T Consensus       232 ~~~~~  236 (240)
T 3eu9_A          232 ARQAK  236 (240)
T ss_dssp             HC---
T ss_pred             hhhcc
Confidence            98764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=300.34  Aligned_cols=222  Identities=25%  Similarity=0.332  Sum_probs=169.9

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHH-HHHHHH
Q 007741           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIE-VVNELL  149 (591)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~-~v~~Ll  149 (591)
                      |.++.+||+.||+.|+.++|++||+.......              .....++..|..|.||||.|+..++.+ ++++|+
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~--------------~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll   73 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLE--------------DAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVP   73 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------------------
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccc--------------cccccccccCccCCCHHHHHHHhCCHHHHHHHHH
Confidence            45566999999999999999999986432110              013346778889999999999988764 889999


Q ss_pred             hcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecC
Q 007741          150 KYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR  229 (591)
Q Consensus       150 ~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~  229 (591)
                      +.|++  ++..|.+|+||||+|+..|+.+++++|++.++++ ...+..|.||+++|+..++.+++++|++. +.+++..|
T Consensus        74 ~~Gad--vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~n~~d  149 (269)
T 4b93_B           74 ASGLG--VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKKD  149 (269)
T ss_dssp             -CCCC--TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCC
T ss_pred             HCCCC--CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHC-CCCCCCCC
Confidence            98765  5778999999999999999999999999999997 66788999999999999999999999998 56678899


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 007741          230 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR  309 (591)
Q Consensus       230 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~  309 (591)
                      ..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|++
T Consensus       150 ~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          150 LSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             TTCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCT
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHh
Confidence            99999999999999999999999999998 77799999999999999999999999999998 89999999999999998


Q ss_pred             cCc
Q 007741          310 KKR  312 (591)
Q Consensus       310 ~g~  312 (591)
                      +++
T Consensus       228 ~~~  230 (269)
T 4b93_B          228 NSK  230 (269)
T ss_dssp             TCH
T ss_pred             CCc
Confidence            775

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.2e-35  Score=305.24  Aligned_cols=263  Identities=25%  Similarity=0.268  Sum_probs=229.9

Q ss_pred             cccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCC
Q 007741          121 VVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT  200 (591)
Q Consensus       121 ~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t  200 (591)
                      ..+..+..|.|+||.||+.|+.+.|+.|+.. .+.+++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.|
T Consensus        16 ~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t   93 (351)
T 3utm_A           16 KAVLTGEYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLV   93 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCC
T ss_pred             eeeeeccccchhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCc
Confidence            3455567789999999999999999999985 34557788999999999999999999999999999997 667889999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHH-------
Q 007741          201 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA-------  273 (591)
Q Consensus       201 pL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A-------  273 (591)
                      |||+|+..|+.+++++|+++ +..++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||+|+|       
T Consensus        94 ~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~  171 (351)
T 3utm_A           94 PLHNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRE  171 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHH
Confidence            99999999999999999998 5667888999999999999999999999999999998 66799999998875       


Q ss_pred             --------------HhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc---CcHHHHHHHhcCCCCCcccccCCCCC
Q 007741          274 --------------VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK---KRTEIVTELLSLPDTNVNALTRDHKT  336 (591)
Q Consensus       274 --------------~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~---g~~~iv~~Ll~~~g~d~~~~d~~G~t  336 (591)
                                    +..++.+.++.++..... ....+..|.||||+|+..   +..+++++|++ .|++++.+|..|+|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t  249 (351)
T 3utm_A          172 RLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFMT  249 (351)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTTCCC
T ss_pred             HHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCCCCC
Confidence                          456677777777776544 445678899999999999   66899999999 59999999999999


Q ss_pred             HHHHHhhCCCChhhHHHHHHHHhcCcccccccCCchHHhhhhhhhhhhhhhhHHHHh
Q 007741          337 ALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT  393 (591)
Q Consensus       337 ~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  393 (591)
                      |||+|+..+    +.+++++|++.|++.........+.+..+......++.+.|-+.
T Consensus       250 ~L~~A~~~g----~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  302 (351)
T 3utm_A          250 PLHVAAERA----HNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY  302 (351)
T ss_dssp             HHHHHHHTT----CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHcC----CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            999999999    88999999999999887777777888888887777777777654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4.6e-35  Score=299.96  Aligned_cols=253  Identities=26%  Similarity=0.331  Sum_probs=211.3

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCC-CCCChHHHHHHHhCcHHHHHHHHhCCCCCc-------------
Q 007741          126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKN-RSGFDPLHIAAVQGHHAIVQVLLDHDPSLS-------------  191 (591)
Q Consensus       126 n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~-------------  191 (591)
                      +.+|.||||.||+.|+.++|++||++|++.  +.++ ..|+||||+|+..|+.++|++|+++|+++.             
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadv--n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANV--NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCCT--TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCC--CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence            345789999999999999999999998664  4455 459999999999999999999999988653             


Q ss_pred             -------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc---------ceecCCCCCcHHHHHHHcC
Q 007741          192 -------------------QTTGPSNATPLVSAATRGHTAVVNELLSKDGGL---------LEISRSNGKNALHFAARQG  243 (591)
Q Consensus       192 -------------------~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~---------~~~~~~~g~tpLh~A~~~g  243 (591)
                                         +..|..|.||||+|+..|+.+++++|++++...         ....+..|.||||+|+..|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence                               245677899999999999999999999884332         1234567999999999999


Q ss_pred             CHHHHHHHHh-cCcccccccCCCCCcHHHHHHhCCC----HHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHH
Q 007741          244 HVDVVKALLS-KDPQLARRTDKKGQTALHMAVKGQS----CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE  318 (591)
Q Consensus       244 ~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~  318 (591)
                      +.+++++|++ .|+++ +..|..|.|+||.++..+.    .+++++|+++|++ ++.+|..|+||||+|+..|+.++++.
T Consensus       180 ~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~  257 (337)
T 4g8k_A          180 HVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQR  257 (337)
T ss_dssp             CHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHH
Confidence            9999999996 47777 7779999999998875433    4688999999998 89999999999999999999999999


Q ss_pred             HhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccccccCCchHHhhhhhhhhhhhhhhHHH
Q 007741          319 LLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLE  391 (591)
Q Consensus       319 Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  391 (591)
                      |++..|++++.+|..|+||||+|+..+    +.+++++|+++|++....     +.+..+......++.+.|-
T Consensus       258 Ll~~~~~~vn~~d~~G~TpL~~A~~~g----~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll  321 (337)
T 4g8k_A          258 LLEQEHIEINDTDSDGKTALLLAVELK----LKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLL  321 (337)
T ss_dssp             HHTSTTCCTTCBCTTSCBHHHHHHHTT----CHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhcCCcccCcCCCCCCHHHHHHHcC----CHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHH
Confidence            999889999999999999999999999    899999999999975432     2455555554555544443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=5.4e-35  Score=283.39  Aligned_cols=231  Identities=25%  Similarity=0.275  Sum_probs=205.4

Q ss_pred             cCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHH
Q 007741           70 TGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELL  149 (591)
Q Consensus        70 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll  149 (591)
                      .|..|.++||.|+..|+.+++++|++.                      +..++..|..|.||||+|+..|+.+++++|+
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~----------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   62 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEA----------------------GYDVRQPDKENVTLLHWAAINNRIDLVKYYI   62 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHT----------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHc----------------------CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            366788999999999999999999986                      6668888999999999999999999999999


Q ss_pred             hcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecC
Q 007741          150 KYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR  229 (591)
Q Consensus       150 ~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~  229 (591)
                      +++...+ ...+..|.||||+|+..|+.+++++|+++++++ ...+..|.||||+|+..|+.+++++|+++ +..++..+
T Consensus        63 ~~~~~~~-~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~  139 (240)
T 3eu9_A           63 SKGAIVD-QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMD  139 (240)
T ss_dssp             HTTCCTT-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCC
T ss_pred             HcCCcch-hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccC
Confidence            9876542 344556999999999999999999999999988 56788999999999999999999999998 55677889


Q ss_pred             CCCCcHHHHHHHcCC-HHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 007741          230 SNGKNALHFAARQGH-VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  308 (591)
Q Consensus       230 ~~g~tpLh~A~~~g~-~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~  308 (591)
                      ..|.||||+|+..++ .+++++|++.++++....+..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+
T Consensus       140 ~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~  218 (240)
T 3eu9_A          140 QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAK  218 (240)
T ss_dssp             TTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHH
T ss_pred             CCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence            999999999997766 89999999999998444334899999999999999999999999988 8899999999999999


Q ss_pred             HcCcHHHHHHHhcCCCCCc
Q 007741          309 RKKRTEIVTELLSLPDTNV  327 (591)
Q Consensus       309 ~~g~~~iv~~Ll~~~g~d~  327 (591)
                      +.|+.+++++|++. +.+.
T Consensus       219 ~~~~~~~v~~L~~~-~~~~  236 (240)
T 3eu9_A          219 QRKNVWMINHLQEA-RQAK  236 (240)
T ss_dssp             HTTCHHHHHHHHHH-C---
T ss_pred             HcCcHHHHHHHHHh-hhcc
Confidence            99999999999984 4443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.6e-35  Score=296.02  Aligned_cols=224  Identities=20%  Similarity=0.190  Sum_probs=202.4

Q ss_pred             ccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCH
Q 007741          122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP  201 (591)
Q Consensus       122 ~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp  201 (591)
                      ++.+|..|.||||+|+..|+.++|++|+++|++.  +..  +|.||||+|+..|+.+++++|+++|+++ +..|..|.||
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~   98 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALK--NLL--ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTA   98 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG--SCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC--CCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcH
Confidence            7889999999999999999999999999987654  333  4899999999999999999999999998 5678899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcceecCCCC-CcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHH
Q 007741          202 LVSAATRGHTAVVNELLSKDGGLLEISRSNG-KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE  280 (591)
Q Consensus       202 L~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g-~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  280 (591)
                      ||+|+..|+.+++++|+++ +.+++..+..| .||||+|+..|+.+++++|++++++...  ...|+||||+|+..|+.+
T Consensus        99 L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~  175 (285)
T 3kea_A           99 LYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVD  175 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHH
Confidence            9999999999999999999 66778889999 8999999999999999999999987622  228999999999999999


Q ss_pred             HHHHHHHcCcccccCCCCCCCcH-HHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHh
Q 007741          281 VVKLLLEADAAIVMLPDKFGNTA-LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR  359 (591)
Q Consensus       281 ~v~~Ll~~~~~~~~~~d~~g~T~-Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~  359 (591)
                      ++++|+++|++ ++.+|..|+|| ||+|+..|+.+++++|+++ |++++.+|.       .|+..+    +.+++++|++
T Consensus       176 ~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~-gad~~~~~~-------~a~~~~----~~~iv~~Ll~  242 (285)
T 3kea_A          176 MMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-DINIYSANL-------ENVLLD----DAEIAKMIIE  242 (285)
T ss_dssp             HHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS-CBCSTTTTG-------GGGTTT----CHHHHHHHHH
T ss_pred             HHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCh-------hhhhcC----CHHHHHHHHH
Confidence            99999999998 89999999998 9999999999999999995 999999984       445566    8999999999


Q ss_pred             cCccccc
Q 007741          360 CGAVRAN  366 (591)
Q Consensus       360 ~ga~~~~  366 (591)
                      +|++...
T Consensus       243 ~g~~~~~  249 (285)
T 3kea_A          243 KHVEYKS  249 (285)
T ss_dssp             HHHHHTT
T ss_pred             cCCCCCC
Confidence            9987543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.8e-35  Score=281.83  Aligned_cols=217  Identities=21%  Similarity=0.266  Sum_probs=189.1

Q ss_pred             CcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 007741          140 GHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS  219 (591)
Q Consensus       140 g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~  219 (591)
                      |+.+++++|++++.+.+ ...|..|.||||+|+..|+.+++++|+++++++ +..+..|.||||+|+..|+.+++++|++
T Consensus         2 g~~~~i~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEETTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcc-cccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            67888888998776532 344778999999999999999999999998887 5677889999999999999999999999


Q ss_pred             cCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCC
Q 007741          220 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF  299 (591)
Q Consensus       220 ~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~  299 (591)
                      +++...+..+..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~  157 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNR  157 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence            877677888889999999999999999999999999887 66788999999999999999999999999887 7888999


Q ss_pred             CCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccc
Q 007741          300 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA  365 (591)
Q Consensus       300 g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~  365 (591)
                      |+||||+|+..|+.+++++|+++ |++++.+|..|+||+++|+..+    +.+++++|.++|+...
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~----~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERM----HHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTT----CHHHHHHHHHTTCSSC
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHc-CCCCccccccCCCHHHHHHHhc----chHHHHHHHHcCCCcc
Confidence            99999999999999999999994 8999999999999999999988    8899999999988654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.9e-34  Score=276.87  Aligned_cols=214  Identities=23%  Similarity=0.322  Sum_probs=191.6

Q ss_pred             CCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccc-cCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCC
Q 007741           85 GDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNE-VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRS  163 (591)
Q Consensus        85 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~  163 (591)
                      |+.+++++|++.                      +..++. .|..|.||||+|+..|+.+++++|++++.+  ++..|..
T Consensus         2 g~~~~i~~Ll~~----------------------g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~   57 (223)
T 2f8y_A            2 DAPAVISDFIYQ----------------------GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD--ANIQDNM   57 (223)
T ss_dssp             ---CCEETTEET----------------------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTT
T ss_pred             CcHHHHHHHHHc----------------------CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC--CCCcCCC
Confidence            566777777765                      334444 488999999999999999999999998755  5678899


Q ss_pred             CChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcC
Q 007741          164 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG  243 (591)
Q Consensus       164 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g  243 (591)
                      |.||||+|+..|+.+++++|+++++......+..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|
T Consensus        58 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~  136 (223)
T 2f8y_A           58 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVN  136 (223)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcCcCCCCCcHHHHHHHcC
Confidence            999999999999999999999999865577889999999999999999999999997 5567888999999999999999


Q ss_pred             CHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCC
Q 007741          244 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLP  323 (591)
Q Consensus       244 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~  323 (591)
                      +.+++++|++.++++ +..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|++.++.+++++|+++ 
T Consensus       137 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~-  213 (223)
T 2f8y_A          137 NVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEY-  213 (223)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred             CHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHc-
Confidence            999999999999998 67799999999999999999999999999998 788999999999999999999999999995 


Q ss_pred             CCC
Q 007741          324 DTN  326 (591)
Q Consensus       324 g~d  326 (591)
                      |+.
T Consensus       214 g~~  216 (223)
T 2f8y_A          214 NLV  216 (223)
T ss_dssp             TCS
T ss_pred             CCC
Confidence            654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4.1e-35  Score=284.48  Aligned_cols=218  Identities=24%  Similarity=0.292  Sum_probs=186.6

Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCc--cCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCC
Q 007741          123 NEVNELGETALFTAADKGHIEVVNELLKYSTKE--GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT  200 (591)
Q Consensus       123 ~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~--~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t  200 (591)
                      +.+|.+|.||||+|+..|+.+++++|++.+...  +++..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.|
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t   80 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNT   80 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCC
Confidence            346889999999999999999999999976542  57888999999999999999999999999999987 667889999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCC-----cceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCC-CCCcHHHHHH
Q 007741          201 PLVSAATRGHTAVVNELLSKDGG-----LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK-KGQTALHMAV  274 (591)
Q Consensus       201 pL~~A~~~g~~~~v~~LL~~~~~-----~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~  274 (591)
                      |||+|+..|+.+++++|++++..     ..+..+..|.||||+|+..|+.+++++|+++|+++ +..+. .|+||||+|+
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~  159 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAV  159 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHH
Confidence            99999999999999999998542     25667888999999999999999999999999998 55565 8999999999


Q ss_pred             hCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcc--cccCCCCCHHHHHhhC
Q 007741          275 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVN--ALTRDHKTALDIAEGL  344 (591)
Q Consensus       275 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~--~~d~~G~t~L~~A~~~  344 (591)
                      ..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++ |++..  ..+..|.||.+.+...
T Consensus       160 ~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          160 DLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             HTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT-SCGGGSSCCCCCTTTCCCCC---
T ss_pred             HcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHc-chhhhhcCCccchHHHHhhhccc
Confidence            99999999999999988 888999999999999999999999999994 88766  7889999988776543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.6e-34  Score=288.79  Aligned_cols=227  Identities=16%  Similarity=0.177  Sum_probs=200.2

Q ss_pred             hhccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHH
Q 007741           67 KQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVN  146 (591)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~  146 (591)
                      ....|.+|.||||+|+..|+.+++++|++.                      +..++..  +|.||||+|+..|+.++++
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------g~~~~~~--~g~t~L~~A~~~g~~~~v~   79 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNA----------------------GALKNLL--ENEFPLHQAATLEDTKIVK   79 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----------------------TGGGSCC--TTCCHHHHHTTSSSCHHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhC----------------------CCCCCCC--CCCCHHHHHHHcCCHHHHH
Confidence            356788999999999999999999999986                      5556666  4999999999999999999


Q ss_pred             HHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCC-CCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 007741          147 ELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN-ATPLVSAATRGHTAVVNELLSKDGGLL  225 (591)
Q Consensus       147 ~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~~v~~LL~~~~~~~  225 (591)
                      +|+++|++  ++..|..|.||||+|+..|+.+++++|+++|+++ +..+..| .||||+|+..|+.+++++|++++....
T Consensus        80 ~Ll~~ga~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~  156 (285)
T 3kea_A           80 ILLFSGLD--DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF  156 (285)
T ss_dssp             HHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC
T ss_pred             HHHHCCCC--CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Confidence            99998765  5678889999999999999999999999999997 5677777 799999999999999999999865442


Q ss_pred             eecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcH-HHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHH
Q 007741          226 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA-LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL  304 (591)
Q Consensus       226 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~L  304 (591)
                      +  ...|.||||+|+..|+.+++++|+++|+++ +..|..|+|| ||+|+..|+.+++++|+++|++ ++.+|       
T Consensus       157 ~--~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------  225 (285)
T 3kea_A          157 D--LAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-IYSAN-------  225 (285)
T ss_dssp             C--CSTHHHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC-STTTT-------
T ss_pred             c--ccCCccHHHHHHHcChHHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------
Confidence            2  138999999999999999999999999998 6779999998 9999999999999999999998 67666       


Q ss_pred             HHHHHcCcHHHHHHHhcCCCCCcccccC
Q 007741          305 HVATRKKRTEIVTELLSLPDTNVNALTR  332 (591)
Q Consensus       305 h~A~~~g~~~iv~~Ll~~~g~d~~~~d~  332 (591)
                      +.|+..|+.+++++|+++ |++++..+.
T Consensus       226 ~~a~~~~~~~iv~~Ll~~-g~~~~~~~~  252 (285)
T 3kea_A          226 LENVLLDDAEIAKMIIEK-HVEYKSDSY  252 (285)
T ss_dssp             GGGGTTTCHHHHHHHHHH-HHHHTTCTT
T ss_pred             hhhhhcCCHHHHHHHHHc-CCCCCCccc
Confidence            366889999999999994 777665543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-34  Score=293.08  Aligned_cols=262  Identities=15%  Similarity=0.130  Sum_probs=194.6

Q ss_pred             cchhhccchhhhccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccc---cccCCCCCcHH
Q 007741           57 IDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVV---NEVNELGETAL  133 (591)
Q Consensus        57 ~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~n~~g~TpL  133 (591)
                      +....+........+..|.++++     |+.++++.||+.........+..        ...+...   ........+.+
T Consensus        35 v~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~--------a~~~~~~~~~~~~~~~~~~~~  101 (327)
T 1sw6_A           35 TSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPT--------SLNNDSSNRNSEGGSSNQQQQ  101 (327)
T ss_dssp             CCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------------
T ss_pred             HHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchH--------hhhcccccccccccCCccchh
Confidence            33444444455566788999988     99999999997531100000000        0000000   00111223446


Q ss_pred             HHHHHhCcHHHHHHHHhcCCCccCcc-CCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC--
Q 007741          134 FTAADKGHIEVVNELLKYSTKEGLTR-KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH--  210 (591)
Q Consensus       134 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~--  210 (591)
                      |+|+..+..++++.|++.+.+  ++. .|..|+||||+|+..|+.++|++|+++|+++ +..|..|.||||+|+..|+  
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~d--vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLN--LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCC--SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHH
T ss_pred             HHHHHhhHHHHHHHHHhcCCC--cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccc
Confidence            899999999999999997654  566 7899999999999999999999999999998 6788999999999999998  


Q ss_pred             -HHHHHHHHhcCCCcceecCCCCCcHHHHHHH----cCCHHHHHHHHhc--------------------CcccccccCCC
Q 007741          211 -TAVVNELLSKDGGLLEISRSNGKNALHFAAR----QGHVDVVKALLSK--------------------DPQLARRTDKK  265 (591)
Q Consensus       211 -~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~----~g~~~~v~~Ll~~--------------------~~~~~~~~d~~  265 (591)
                       .++++.|++.....++..|..|.||||+|+.    .|+.+++++|++.                    +.++ +..|..
T Consensus       179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~  257 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGE  257 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred             cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-cccccc
Confidence             6888888888666788899999999999999    8999999999987                    5666 667899


Q ss_pred             CCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 007741          266 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLP  345 (591)
Q Consensus       266 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~  345 (591)
                      |.||||.|+.      +++|++++   ++.+|..|+||||+|+..|+.+++++|+++ |+|++.+|..|+||||+|++.+
T Consensus       258 g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          258 RKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             --CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcC
Confidence            9999999986      89999983   788999999999999999999999999995 9999999999999999998653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=9.9e-34  Score=274.67  Aligned_cols=221  Identities=24%  Similarity=0.270  Sum_probs=188.4

Q ss_pred             hccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHH
Q 007741           68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNE  147 (591)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~  147 (591)
                      +..|.+|.||||.|+..|+.++++.|++.....                  +..++..|..|.||||+|+..|+.+++++
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   63 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD------------------LAFLNFQNNLQQTPLHLAVITNQPEIAEA   63 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----------------------CCCCCCCCTTCCCHHHHHHHTTCHHHHHC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhcc------------------HHHhhccCCCCCCHHHHHHHcCCHHHHHH
Confidence            456889999999999999999999999763311                  44689999999999999999999999999


Q ss_pred             HHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCC-----cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 007741          148 LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL-----SQTTGPSNATPLVSAATRGHTAVVNELLSKDG  222 (591)
Q Consensus       148 Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~  222 (591)
                      |+++|++  ++..+..|.||||+|+..|+.+++++|++++++.     ....+..|.||||+|+..|+.+++++|+++ +
T Consensus        64 Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g  140 (236)
T 1ikn_D           64 LLGAGCD--PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-G  140 (236)
T ss_dssp             CCSCCCC--SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-T
T ss_pred             HHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-C
Confidence            9998755  5678889999999999999999999999998653     356788899999999999999999999998 4


Q ss_pred             CcceecCC-CCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccc-cCCCCCC
Q 007741          223 GLLEISRS-NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV-MLPDKFG  300 (591)
Q Consensus       223 ~~~~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~-~~~d~~g  300 (591)
                      .+++..+. .|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++.. ..++..|
T Consensus       141 ~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~  219 (236)
T 1ikn_D          141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESED  219 (236)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCT
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccch
Confidence            55677776 9999999999999999999999999998 6779999999999999999999999999998633 4778888


Q ss_pred             CcHHHHHHHc
Q 007741          301 NTALHVATRK  310 (591)
Q Consensus       301 ~T~Lh~A~~~  310 (591)
                      .|+.+.+...
T Consensus       220 ~~~~~~~~~~  229 (236)
T 1ikn_D          220 EESYDTESEF  229 (236)
T ss_dssp             TTCCCCC---
T ss_pred             HHHHhhhccc
Confidence            8887765543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.1e-32  Score=266.31  Aligned_cols=192  Identities=24%  Similarity=0.369  Sum_probs=145.7

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCc----ccCCCCCCCHHH
Q 007741          128 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS----QTTGPSNATPLV  203 (591)
Q Consensus       128 ~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~----~~~~~~g~tpL~  203 (591)
                      .|+||||+|+..|+.+++++|++.. +.+++..|..|+||||+|+..|+.+++++|+++++++.    ...|..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            4899999999999999999999861 24467788999999999999999999999999988753    345668889999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcceecCC-------------CCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHH
Q 007741          204 SAATRGHTAVVNELLSKDGGLLEISRS-------------NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTAL  270 (591)
Q Consensus       204 ~A~~~g~~~~v~~LL~~~~~~~~~~~~-------------~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  270 (591)
                      +|+..|+.+++++|++++ .+++..+.             +|.||||+|+..|+.+++++|+++|+++ +..|..|+|||
T Consensus        81 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L  158 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARG-ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVL  158 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTT-CCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             HHHHcCCHHHHHHHHhCC-CCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHH
Confidence            999999999999999884 44444433             5777777777777777777777777766 55567777777


Q ss_pred             HHHHhCCCHHHH----HHHHHcCcccc-----cCCCCCCCcHHHHHHHcCcHHHHHHHhcC
Q 007741          271 HMAVKGQSCEVV----KLLLEADAAIV-----MLPDKFGNTALHVATRKKRTEIVTELLSL  322 (591)
Q Consensus       271 h~A~~~~~~~~v----~~Ll~~~~~~~-----~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~  322 (591)
                      |+|+..++.+++    ++|+++|++..     +.+|..|+||||+|+..|+.+++++|+++
T Consensus       159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~  219 (232)
T 2rfa_A          159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK  219 (232)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            777777777666    66777666532     46666777777777777777777777763

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.5e-33  Score=279.20  Aligned_cols=272  Identities=18%  Similarity=0.194  Sum_probs=219.1

Q ss_pred             HHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCc
Q 007741           79 HLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLT  158 (591)
Q Consensus        79 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~  158 (591)
                      +.++..|..+.++.++...........             .......+..|.||||.||..|+.++|++|+++|.+  ++
T Consensus         3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~--~~   67 (299)
T 1s70_B            3 MADAKQKRNEQLKRWIGSETDLEPPVV-------------KRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD--IN   67 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTSSCCSCC-------------CCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC--TT
T ss_pred             hhHHHHHHHHHHHHHHccccccccccc-------------cCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC--Cc
Confidence            357788888888888865332111000             111233456788999999999999999999998755  57


Q ss_pred             cCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHH
Q 007741          159 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF  238 (591)
Q Consensus       159 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~  238 (591)
                      ..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +..++..+..|.||||+
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~  145 (299)
T 1s70_B           68 YANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDI  145 (299)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHH
Confidence            78889999999999999999999999999998 66788999999999999999999999998 55677889999999999


Q ss_pred             HHHcCCHHHHHHHHhc-CcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHH
Q 007741          239 AARQGHVDVVKALLSK-DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT  317 (591)
Q Consensus       239 A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~  317 (591)
                      |+..++.++++.++.. +.++ +..+..+.++++        ..+..++..+.......+..|.||||+|+..|+.++++
T Consensus       146 A~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  216 (299)
T 1s70_B          146 AEEEAMEELLQNEVNRQGVDI-EAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK  216 (299)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCH-HHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHhcchHHHHHHHHhhcCCCc-hhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHH
Confidence            9999999999988875 3333 332333333333        34556666666656677889999999999999999999


Q ss_pred             HHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccccccCCchHHhhhhhhh
Q 007741          318 ELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQ  381 (591)
Q Consensus       318 ~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~  381 (591)
                      +|++ .|++++.+|..|+||||+|+..+    +.+++++|++.|++...........+..+.++
T Consensus       217 ~Ll~-~g~d~~~~d~~g~tpL~~A~~~~----~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          217 LLIQ-ARYDVNIKDYDGWTPLHAAAHWG----KEEACRILVENLCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             HHHT-TTCCTTCCCTTCCCHHHHHHHTT----CHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred             HHHH-cCCCCCCcCCCCCcHHHHHHhcC----CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence            9999 59999999999999999999999    89999999999998776665566666555433

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.5e-32  Score=263.89  Aligned_cols=197  Identities=25%  Similarity=0.263  Sum_probs=176.8

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcC
Q 007741           73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYS  152 (591)
Q Consensus        73 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~  152 (591)
                      .|.||||.|++.|+.++++.|++..                     +..++.+|..|.||||+|+..|+.+++++|++++
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~---------------------g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~   60 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFE---------------------GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA   60 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTT---------------------CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhc---------------------CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4789999999999999999999752                     5668889999999999999999999999999987


Q ss_pred             CCcc---CccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccC------------CCCCCCHHHHHHHcCCHHHHHHH
Q 007741          153 TKEG---LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT------------GPSNATPLVSAATRGHTAVVNEL  217 (591)
Q Consensus       153 ~~~~---~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~------------~~~g~tpL~~A~~~g~~~~v~~L  217 (591)
                      ++..   ....|..|.||||+|+..|+.+++++|+++|+++....            +..|.||||+|+..|+.+++++|
T Consensus        61 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  140 (232)
T 2rfa_A           61 PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL  140 (232)
T ss_dssp             GGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHH
T ss_pred             chhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHH
Confidence            6532   25567789999999999999999999999999874432            23799999999999999999999


Q ss_pred             HhcCCCcceecCCCCCcHHHHHHHcCCHHHH----HHHHhcCcccc-----cccCCCCCcHHHHHHhCCCHHHHHHHHHc
Q 007741          218 LSKDGGLLEISRSNGKNALHFAARQGHVDVV----KALLSKDPQLA-----RRTDKKGQTALHMAVKGQSCEVVKLLLEA  288 (591)
Q Consensus       218 L~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v----~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  288 (591)
                      +++ +.+++..|.+|.||||+|+..|+.+++    ++|++.+++..     +..|..|+||||+|++.|+.+++++|+++
T Consensus       141 l~~-ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~  219 (232)
T 2rfa_A          141 IEH-GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK  219 (232)
T ss_dssp             HHT-TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHC-CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            998 667888999999999999999999988    99999998764     57799999999999999999999999999


Q ss_pred             Ccc
Q 007741          289 DAA  291 (591)
Q Consensus       289 ~~~  291 (591)
                      |+.
T Consensus       220 g~~  222 (232)
T 2rfa_A          220 RKH  222 (232)
T ss_dssp             HHH
T ss_pred             Ccc
Confidence            876

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=7.1e-32  Score=254.55  Aligned_cols=193  Identities=30%  Similarity=0.368  Sum_probs=175.5

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHH
Q 007741          126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  205 (591)
Q Consensus       126 n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  205 (591)
                      +..+.||||.|+..|+.+.++.|++.+. .+++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A   79 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYA   79 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            4568999999999999999999999754 356788889999999999999999999999999998 66788999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCcHHHHHHhCCC-----H
Q 007741          206 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD-PQLARRTDKKGQTALHMAVKGQS-----C  279 (591)
Q Consensus       206 ~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~g~t~Lh~A~~~~~-----~  279 (591)
                      +..|+.+++++|++..+..++..+..|.||||+|+..|+.+++++|++.+ .++ +..|..|+||||+|+..++     .
T Consensus        80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~  158 (201)
T 3hra_A           80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQ  158 (201)
T ss_dssp             HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred             HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHH
Confidence            99999999999998878888888999999999999999999999999999 555 7789999999999999888     8


Q ss_pred             HHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcC
Q 007741          280 EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL  322 (591)
Q Consensus       280 ~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~  322 (591)
                      +++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++
T Consensus       159 ~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          159 DIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            999999999988 788999999999999999999999999984

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.2e-31  Score=253.02  Aligned_cols=194  Identities=26%  Similarity=0.309  Sum_probs=177.5

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhc
Q 007741           72 RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKY  151 (591)
Q Consensus        72 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~  151 (591)
                      ..+.||||.|+..|+.+.++.|+...                     +..++..|..|.||||+|+..|+.+++++|+++
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~---------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   61 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDT---------------------TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR   61 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCT---------------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcC---------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            45779999999999999999999763                     346888999999999999999999999999998


Q ss_pred             CCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCC
Q 007741          152 STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN  231 (591)
Q Consensus       152 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~  231 (591)
                      |++  ++..+..|.||||+|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|+++++.+++..|..
T Consensus        62 g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  139 (201)
T 3hra_A           62 GAD--INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF  139 (201)
T ss_dssp             TCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTT
T ss_pred             CCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC
Confidence            765  567888999999999999999999999965554447788899999999999999999999999976888999999


Q ss_pred             CCcHHHHHHHcCC-----HHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcC
Q 007741          232 GKNALHFAARQGH-----VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD  289 (591)
Q Consensus       232 g~tpLh~A~~~g~-----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~  289 (591)
                      |.||||+|+..++     .+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++|
T Consensus       140 g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCHHHHHHHhccchhhHHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9999999999998     99999999999998 777999999999999999999999999876

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.98  E-value=5.9e-33  Score=275.45  Aligned_cols=217  Identities=19%  Similarity=0.253  Sum_probs=155.3

Q ss_pred             cccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCC--ccCc----cCCCCCChHHHHHHHh---CcHHHHHHHHhCCCC
Q 007741          119 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTK--EGLT----RKNRSGFDPLHIAAVQ---GHHAIVQVLLDHDPS  189 (591)
Q Consensus       119 ~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~--~~~~----~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~  189 (591)
                      ++..+..|..|.||||.|+..|+.++|+.|++.+..  .++.    ..+..|+||||+|+..   |+.+++++|+++|++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence            344567799999999999999999999999985422  1222    3578899999999987   999999999998764


Q ss_pred             Cc----------ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCC--------------CCCcHHHHHHHcCCH
Q 007741          190 LS----------QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS--------------NGKNALHFAARQGHV  245 (591)
Q Consensus       190 ~~----------~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~--------------~g~tpLh~A~~~g~~  245 (591)
                      ..          ...|..|.||||+|+..|+.+++++|+++ +.+++..+.              .|.||||+|+..|+.
T Consensus        83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~  161 (273)
T 2pnn_A           83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL  161 (273)
T ss_dssp             TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH
T ss_pred             ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccccccccccccccCCCCHHHHHHHcCCH
Confidence            31          12456788888888888888888888887 455565655              688888888888888


Q ss_pred             HHHHHHHh---cCcccccccCCCCCcHHHHHHhCCC---------HHHHHHHHHcCcccc------cCCCCCCCcHHHHH
Q 007741          246 DVVKALLS---KDPQLARRTDKKGQTALHMAVKGQS---------CEVVKLLLEADAAIV------MLPDKFGNTALHVA  307 (591)
Q Consensus       246 ~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~~~~~~~------~~~d~~g~T~Lh~A  307 (591)
                      +++++|++   .|+++ +.+|..|+||||+|+..|+         .+++++|+++|+++.      +.+|..|+||||+|
T Consensus       162 ~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A  240 (273)
T 2pnn_A          162 AIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA  240 (273)
T ss_dssp             HHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence            88888888   77777 5668888888888888777         688888888887732      35788888888888


Q ss_pred             HHcCcHHHHHHHhcCCCC-CcccccCCCCCHH
Q 007741          308 TRKKRTEIVTELLSLPDT-NVNALTRDHKTAL  338 (591)
Q Consensus       308 ~~~g~~~iv~~Ll~~~g~-d~~~~d~~G~t~L  338 (591)
                      +..|+.+++++|+++ |+ |+......+.+|-
T Consensus       241 ~~~g~~~iv~~Ll~~-ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          241 ASSGKIGVLAYILQR-EIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHTTCHHHHHHHHHH-HTC-------------
T ss_pred             HHhChHHHHHHHHHC-CCCCchhhhhhhhhcc
Confidence            888888888888885 55 7777666665553

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=4.5e-32  Score=269.10  Aligned_cols=218  Identities=19%  Similarity=0.227  Sum_probs=173.4

Q ss_pred             hccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhccccc----ccCCCCCcHHHHHHHh---C
Q 007741           68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVN----EVNELGETALFTAADK---G  140 (591)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~n~~g~TpL~~Aa~~---g  140 (591)
                      +..+..|.||||.|++.|+.++|+.|++....                  .+..++    ..|..|.||||+|+..   |
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------------------~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g   68 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQR------------------SKKRLTDSEFKDPETGKTCLLKAMLNLHNG   68 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHH------------------SCCCTTSGGGSCTTTCCCHHHHHHHSCBTT
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhh------------------cccccCCcccccCcCCCCHHHHHHHHHhcC
Confidence            34678899999999999999999999863110                  022232    4588999999999987   9


Q ss_pred             cHHHHHHHHhcCCCc---------cCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCC--------------C
Q 007741          141 HIEVVNELLKYSTKE---------GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGP--------------S  197 (591)
Q Consensus       141 ~~~~v~~Ll~~~~~~---------~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~--------------~  197 (591)
                      +.++|++|++++++.         .....|..|.||||+|+..|+.+++++|+++|+++.. .+.              .
T Consensus        69 ~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~~~  147 (273)
T 2pnn_A           69 QNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA-AANGDFFKKTKGRPGFYF  147 (273)
T ss_dssp             BCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBCSGGGSSCSSSCCCCS
T ss_pred             ChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-cccccccccccccccccC
Confidence            999999999987542         1233567899999999999999999999999999844 443              7


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhc--CCCcceecCCCCCcHHHHHHHcCC---------HHHHHHHHhcCcccc------c
Q 007741          198 NATPLVSAATRGHTAVVNELLSK--DGGLLEISRSNGKNALHFAARQGH---------VDVVKALLSKDPQLA------R  260 (591)
Q Consensus       198 g~tpL~~A~~~g~~~~v~~LL~~--~~~~~~~~~~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~------~  260 (591)
                      |.||||+|+..|+.+++++|++.  .+.+++..|.+|.||||+|+..|+         .+++++|+++|+++.      +
T Consensus       148 g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~  227 (273)
T 2pnn_A          148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE  227 (273)
T ss_dssp             CBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGG
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccccccc
Confidence            99999999999999999999994  477788899999999999999998         899999999999884      3


Q ss_pred             ccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHH
Q 007741          261 RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL  304 (591)
Q Consensus       261 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~L  304 (591)
                      ..|..|+||||+|++.|+.+++++|+++|+..+......+.+|-
T Consensus       228 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          228 ITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             ccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence            57999999999999999999999999999965776666666553

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.2e-31  Score=263.41  Aligned_cols=204  Identities=24%  Similarity=0.280  Sum_probs=142.4

Q ss_pred             CCcHhHHHHHcCCHHHHH----HHHcCCCcccccccCCCcchhHHHHhhcccccc----cCCCCCcHHHHHHHh---CcH
Q 007741           74 NDTELHLAAQRGDLGAVK----QILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNE----VNELGETALFTAADK---GHI  142 (591)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~----~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~n~~g~TpL~~Aa~~---g~~  142 (591)
                      |.||||.|++.|+.+.++    +|++.                      +..++.    .|..|.||||+|+..   |+.
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~----------------------g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~   59 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWN----------------------SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVN   59 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHH----------------------TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHc----------------------CCCcccccccCCCCCCCHHHHHHHccccchH
Confidence            679999999999998554    44443                      556776    899999999999999   999


Q ss_pred             HHHHHHHhcCCCccC---------ccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHH
Q 007741          143 EVVNELLKYSTKEGL---------TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAV  213 (591)
Q Consensus       143 ~~v~~Ll~~~~~~~~---------~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  213 (591)
                      ++|++|++++++.+.         ...|..|.||||+|+..|+.+++++|+++|+++. ..+..+.+             
T Consensus        60 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~-------------  125 (256)
T 2etb_A           60 ACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFF-------------  125 (256)
T ss_dssp             TTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGG-------------
T ss_pred             HHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccc-------------
Confidence            999999998765431         1245679999999999999999999999998873 34433210             


Q ss_pred             HHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHh---cCcccccccCCCCCcHHHHHHh--CCCHH-------H
Q 007741          214 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS---KDPQLARRTDKKGQTALHMAVK--GQSCE-------V  281 (591)
Q Consensus       214 v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~--~~~~~-------~  281 (591)
                              .......+..|.||||+|+..|+.+++++|++   .|+++ +..|..|+||||+|+.  .++.+       +
T Consensus       126 --------~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~i  196 (256)
T 2etb_A          126 --------QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHM  196 (256)
T ss_dssp             --------SCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             --------cccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHH
Confidence                    01112223346666666666666666666666   56655 4556666666666665  55655       6


Q ss_pred             HHHHHHcCcccc------cCCCCCCCcHHHHHHHcCcHHHHHHHhcC
Q 007741          282 VKLLLEADAAIV------MLPDKFGNTALHVATRKKRTEIVTELLSL  322 (591)
Q Consensus       282 v~~Ll~~~~~~~------~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~  322 (591)
                      +++|+++|+++.      +.+|..|+||||+|+..|+.+++++|+++
T Consensus       197 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  243 (256)
T 2etb_A          197 YDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR  243 (256)
T ss_dssp             HHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence            666666666521      56666677777777777777777776663

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.3e-31  Score=261.26  Aligned_cols=205  Identities=24%  Similarity=0.276  Sum_probs=158.6

Q ss_pred             CCCcHHHHHHHhCcHH----HHHHHHhcCCCccCcc----CCCCCChHHHHHHHh---CcHHHHHHHHhCCCCCcccCCC
Q 007741          128 LGETALFTAADKGHIE----VVNELLKYSTKEGLTR----KNRSGFDPLHIAAVQ---GHHAIVQVLLDHDPSLSQTTGP  196 (591)
Q Consensus       128 ~g~TpL~~Aa~~g~~~----~v~~Ll~~~~~~~~~~----~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~  196 (591)
                      .|+||||.|+..|+.+    ++++|++.+.+  ++.    .|..|+||||+|+..   |+.+++++|+++|++...... 
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~--i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~-   77 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY--LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP-   77 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC--TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC-
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC--cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh-
Confidence            3678888888888886    45566665543  344    677788888888888   888888888887766532110 


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCC-----------
Q 007741          197 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK-----------  265 (591)
Q Consensus       197 ~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-----------  265 (591)
                                          ++..   .....|..|.||||+|+..|+.+++++|+++|+++ +..|..           
T Consensus        78 --------------------~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~  133 (256)
T 2etb_A           78 --------------------LVNA---QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCF  133 (256)
T ss_dssp             --------------------GGGC---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCC
T ss_pred             --------------------hccc---ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Ccccccccccccccccc
Confidence                                0000   01123455677777777777777777777776666 333443           


Q ss_pred             --CCcHHHHHHhCCCHHHHHHHHH---cCcccccCCCCCCCcHHHHHHH--cCcHH-------HHHHHhcCCCCCc----
Q 007741          266 --GQTALHMAVKGQSCEVVKLLLE---ADAAIVMLPDKFGNTALHVATR--KKRTE-------IVTELLSLPDTNV----  327 (591)
Q Consensus       266 --g~t~Lh~A~~~~~~~~v~~Ll~---~~~~~~~~~d~~g~T~Lh~A~~--~g~~~-------iv~~Ll~~~g~d~----  327 (591)
                        |+||||+|+..|+.+++++|++   +|++ ++.+|..|+||||+|+.  .++.+       ++++|++. |+++    
T Consensus       134 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~  211 (256)
T 2etb_A          134 YFGELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTV  211 (256)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCccccc
Confidence              9999999999999999999999   8888 89999999999999999  88888       99999994 9999    


Q ss_pred             ---ccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccc
Q 007741          328 ---NALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA  365 (591)
Q Consensus       328 ---~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~  365 (591)
                         +.+|..|+||||+|+..+    +.+++++|+++|+...
T Consensus       212 ~~~~~~d~~g~tpL~~A~~~g----~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          212 QLEEISNHQGLTPLKLAAKEG----KIEIFRHILQREFSGA  248 (256)
T ss_dssp             CGGGCCCTTSCCHHHHHHHTT----CHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCCCCHHHHHHHhC----CHHHHHHHHhCCCCCC
Confidence               999999999999999999    8999999999998754

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=3.4e-31  Score=260.64  Aligned_cols=201  Identities=20%  Similarity=0.222  Sum_probs=127.6

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhccccccc----CCCCCcHHHHHH---HhCcHH
Q 007741           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEV----NELGETALFTAA---DKGHIE  143 (591)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----n~~g~TpL~~Aa---~~g~~~  143 (591)
                      +..|.++||.|++.|+.+.++.|++...                  ..+..++..    |..|.||||+|+   ..|+.+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~------------------~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~   63 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLL------------------THKKRLTDEEFREPSTGKTCLPKALLNLSAGRND   63 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHH------------------HHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCT
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHH------------------hcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHH
Confidence            4567899999999999997777765100                  003344433    477999999999   779999


Q ss_pred             HHHHHHhcCCC---------ccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCC--------------CCCCC
Q 007741          144 VVNELLKYSTK---------EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG--------------PSNAT  200 (591)
Q Consensus       144 ~v~~Ll~~~~~---------~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~--------------~~g~t  200 (591)
                      +|++|++.+++         ......|..|+||||+|+..|+.+++++|+++|+++. ..+              ..|.|
T Consensus        64 ~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~t  142 (260)
T 3jxi_A           64 TIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGEL  142 (260)
T ss_dssp             HHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSS
T ss_pred             HHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCC
Confidence            99999998753         2344556689999999999999999999999998874 333              34555


Q ss_pred             HHHHHHHcCCHHHHHHHHhc--CCCcceecCCCCCcHHHHHHHcCC---------HHHHHHHHhcCcccc------cccC
Q 007741          201 PLVSAATRGHTAVVNELLSK--DGGLLEISRSNGKNALHFAARQGH---------VDVVKALLSKDPQLA------RRTD  263 (591)
Q Consensus       201 pL~~A~~~g~~~~v~~LL~~--~~~~~~~~~~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~------~~~d  263 (591)
                      |||+|+..|+.+++++|++.  .+.+++..|..|.||||+|+..|+         .+++++|+++|+++.      +..|
T Consensus       143 pL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d  222 (260)
T 3jxi_A          143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN  222 (260)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhccc
Confidence            55555555555555555552  234444445555555555554444         345555555544432      2334


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHHcCc
Q 007741          264 KKGQTALHMAVKGQSCEVVKLLLEADA  290 (591)
Q Consensus       264 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  290 (591)
                      ..|+||||+|++.|+.+++++|+++|+
T Consensus       223 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~  249 (260)
T 3jxi_A          223 NDGLSPLMMAAKTGKIGIFQHIIRREI  249 (260)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            444455555544444445544444443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=6.3e-30  Score=234.09  Aligned_cols=157  Identities=35%  Similarity=0.473  Sum_probs=86.0

Q ss_pred             HHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHH
Q 007741          167 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD  246 (591)
Q Consensus       167 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~  246 (591)
                      +|+.||..|+.++|+.|+++|+++ +..|..|.||||+|+..++.+++++|+++ +.+++..|.+|.||||+|+..|+.+
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhhccCCCCHHHHHHHcCCHH
Confidence            444455555555555555555444 33444455555555555555555555544 3334445555666666666666666


Q ss_pred             HHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCC
Q 007741          247 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN  326 (591)
Q Consensus       247 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d  326 (591)
                      ++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|++.|+.+++++|++ .|++
T Consensus        85 ~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GA~  161 (169)
T 4gpm_A           85 VVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLEK-QGGW  161 (169)
T ss_dssp             HHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHT-C---
T ss_pred             HHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCC
Confidence            666666666655 44566666666666666666666666666665 55566666666666666666666666666 3555


Q ss_pred             cc
Q 007741          327 VN  328 (591)
Q Consensus       327 ~~  328 (591)
                      ++
T Consensus       162 ie  163 (169)
T 4gpm_A          162 LE  163 (169)
T ss_dssp             --
T ss_pred             cC
Confidence            54

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=2e-29  Score=230.81  Aligned_cols=157  Identities=34%  Similarity=0.548  Sum_probs=144.8

Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC
Q 007741          131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH  210 (591)
Q Consensus       131 TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  210 (591)
                      ++|+.||+.|+.++|++||++|++  ++.+|..|+||||+|+..++.+++++|+++|+++ +..|..|.||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad--vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence            479999999999999999998765  5778999999999999999999999999999998 6788999999999999999


Q ss_pred             HHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCc
Q 007741          211 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA  290 (591)
Q Consensus       211 ~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  290 (591)
                      .+++++|+++ +.+++.+|.+|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|++.|+.+++++|+++|+
T Consensus        83 ~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A           83 KEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             HHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            9999999998 5668889999999999999999999999999999998 6779999999999999999999999999999


Q ss_pred             cc
Q 007741          291 AI  292 (591)
Q Consensus       291 ~~  292 (591)
                      ++
T Consensus       161 ~i  162 (169)
T 4gpm_A          161 WL  162 (169)
T ss_dssp             --
T ss_pred             Cc
Confidence            84

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=3.5e-31  Score=269.86  Aligned_cols=257  Identities=14%  Similarity=0.056  Sum_probs=198.1

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCC
Q 007741           74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYST  153 (591)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~  153 (591)
                      +.+|+|.    ...+++++|++.                      ++.++..|..|.|+++     |+.++|++|+++|.
T Consensus        23 ~~~~~~~----~~~dlv~~ll~~----------------------ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~   71 (327)
T 1sw6_A           23 TAGPIIT----FTHDLTSDFLSS----------------------PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLL   71 (327)
T ss_dssp             --CCEEE----CCTTCCCSTTTS----------------------SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHH
T ss_pred             cccchhh----hcCchHHHHhhC----------------------CcccccCCCCCCcccC-----chhHHHHHHHHhcc
Confidence            3355552    445668888876                      7789999999999987     99999999999886


Q ss_pred             CccCcc---------------CCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 007741          154 KEGLTR---------------KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL  218 (591)
Q Consensus       154 ~~~~~~---------------~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL  218 (591)
                      +++...               ......+.+|+|+..+..++++.|++.+.+++...|..|.||||+|+..|+.+++++|+
T Consensus        72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll  151 (327)
T 1sw6_A           72 FPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV  151 (327)
T ss_dssp             C-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            543210               01112234588999999999999999999985548999999999999999999999999


Q ss_pred             hcCCCcceecCCCCCcHHHHHHHcCC---HHHHHHHHhcCcccccccCCCCCcHHHHHHh----CCCHHHHHHHHHc---
Q 007741          219 SKDGGLLEISRSNGKNALHFAARQGH---VDVVKALLSKDPQLARRTDKKGQTALHMAVK----GQSCEVVKLLLEA---  288 (591)
Q Consensus       219 ~~~~~~~~~~~~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~~~~~~v~~Ll~~---  288 (591)
                      ++ +.+++..|.+|.||||+|+..|+   .++++.|++.+....+..|..|+||||+|+.    .|+.+++++|++.   
T Consensus       152 ~~-Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~  230 (327)
T 1sw6_A          152 KH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG  230 (327)
T ss_dssp             HT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             Hc-CCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHH
Confidence            98 56778899999999999999998   7888888888744347889999999999999    9999999999987   


Q ss_pred             -----------------CcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhH
Q 007741          289 -----------------DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEAS  351 (591)
Q Consensus       289 -----------------~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~  351 (591)
                                       +++ ++.+|..|.||||.|+.      +++|++.   +++.+|..|+||||+|+..+    +.
T Consensus       231 ~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g----~~  296 (327)
T 1sw6_A          231 WIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLG----NI  296 (327)
T ss_dssp             HHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHC----CH
T ss_pred             HHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcC----CH
Confidence                             555 78889999999999985      8888885   69999999999999999999    89


Q ss_pred             HHHHHHHhcCcccccccCCchHHhh
Q 007741          352 EIKDCLARCGAVRANELNQPRDELR  376 (591)
Q Consensus       352 ~i~~~L~~~ga~~~~~~~~~~~~l~  376 (591)
                      +++++|+++|++..........++.
T Consensus       297 ~~v~~Ll~~Gad~~~~d~~G~TpL~  321 (327)
T 1sw6_A          297 SIVDALLDYGADPFIANKSGLRPVD  321 (327)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHH
Confidence            9999999999987666555554443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.6e-30  Score=253.33  Aligned_cols=208  Identities=21%  Similarity=0.224  Sum_probs=122.1

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHh----cCCCccCcc--CCCCCChHHHHHH---HhCcHHHHHHHHhCCCCCcccCCC
Q 007741          126 NELGETALFTAADKGHIEVVNELLK----YSTKEGLTR--KNRSGFDPLHIAA---VQGHHAIVQVLLDHDPSLSQTTGP  196 (591)
Q Consensus       126 n~~g~TpL~~Aa~~g~~~~v~~Ll~----~~~~~~~~~--~~~~g~t~Lh~A~---~~g~~~iv~~Ll~~~~~~~~~~~~  196 (591)
                      |..|+|+||.|++.|+.+.++.|++    .+...+...  .+..|.||||+|+   ..|+.+++++|++.+++....   
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~---   78 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM---   78 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH---
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch---
Confidence            5678899999999999985554444    665433221  2366889999888   678999999999876543110   


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccC-------------
Q 007741          197 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTD-------------  263 (591)
Q Consensus       197 ~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-------------  263 (591)
                                        ..++   .......|..|.||||+|+..|+.+++++|++.|+++ +..|             
T Consensus        79 ------------------~~~~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~  136 (260)
T 3jxi_A           79 ------------------REFI---NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGY  136 (260)
T ss_dssp             ------------------HHHH---TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCS
T ss_pred             ------------------Hhhh---cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCccccccc
Confidence                              0011   1112223334555555555555555555555555554 2223             


Q ss_pred             -CCCCcHHHHHHhCCCHHHHHHHHH---cCcccccCCCCCCCcHHHHHHHcCc---------HHHHHHHhcCCCCCc---
Q 007741          264 -KKGQTALHMAVKGQSCEVVKLLLE---ADAAIVMLPDKFGNTALHVATRKKR---------TEIVTELLSLPDTNV---  327 (591)
Q Consensus       264 -~~g~t~Lh~A~~~~~~~~v~~Ll~---~~~~~~~~~d~~g~T~Lh~A~~~g~---------~~iv~~Ll~~~g~d~---  327 (591)
                       ..|+||||+|+..|+.+++++|++   .|++ ++.+|..|+||||+|+..++         .+++++|++ .|+++   
T Consensus       137 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~  214 (260)
T 3jxi_A          137 FYFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPD  214 (260)
T ss_dssp             CCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTT
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccc
Confidence             356666666666666666666666   5555 55556666666666665554         456666665 35555   


Q ss_pred             ----ccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCccc
Q 007741          328 ----NALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  364 (591)
Q Consensus       328 ----~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  364 (591)
                          +.+|..|+||||+|+..+    +.+++++|+++|+..
T Consensus       215 ~~~~~~~d~~g~tpL~~A~~~g----~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          215 TNLEALLNNDGLSPLMMAAKTG----KIGIFQHIIRREIAD  251 (260)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTT----CHHHHHHHHHHHHHH
T ss_pred             cchhhcccCCCCCHHHHHHHcC----CHHHHHHHHHhCCCc
Confidence                456666666666666665    556666666665543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=4.1e-30  Score=255.44  Aligned_cols=193  Identities=25%  Similarity=0.319  Sum_probs=164.9

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHH--
Q 007741          129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA--  206 (591)
Q Consensus       129 g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--  206 (591)
                      +.+++|.|+..|+.+.++.|++.+.+..++..|..|+||||+|+..|+.+++++|++.|+...+..+..|.||||+|+  
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            467889999999999999998876665678889999999999999999999999999998444778888999999998  


Q ss_pred             ---HcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHH
Q 007741          207 ---TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK  283 (591)
Q Consensus       207 ---~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  283 (591)
                         ..++.+++++|++.+ ......+..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.++++
T Consensus       156 ~~~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHS-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHH
Confidence               667888999888884 555667788899999999999999999999998887 667888999999999999999999


Q ss_pred             HHHH-cCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCC
Q 007741          284 LLLE-ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPD  324 (591)
Q Consensus       284 ~Ll~-~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g  324 (591)
                      +|++ .|++ ++.+|..|+||||+|+..|+.+++++|+++.+
T Consensus       234 ~Ll~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          234 LLLAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHHhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            9998 6776 78888889999999999999999998887644

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=6.8e-29  Score=246.61  Aligned_cols=192  Identities=26%  Similarity=0.282  Sum_probs=176.4

Q ss_pred             ChHHHHHHHhCcHHHHHHHHhCCCC-CcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHH---
Q 007741          165 FDPLHIAAVQGHHAIVQVLLDHDPS-LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA---  240 (591)
Q Consensus       165 ~t~Lh~A~~~g~~~iv~~Ll~~~~~-~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~---  240 (591)
                      ++++|.|+..|+.+.++.+++.+.+ ..+..|..|.||||+|+..|+.+++++|++.+..+++..+..|.||||+|+   
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            4688999999999999999887554 135678899999999999999999999999977688899999999999999   


Q ss_pred             --HcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHH
Q 007741          241 --RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE  318 (591)
Q Consensus       241 --~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~  318 (591)
                        ..++.+++++|++.+... +..|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++
T Consensus       157 ~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~  234 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGL  234 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             hhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence              668999999999999776 66788999999999999999999999999998 89999999999999999999999999


Q ss_pred             HhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCc
Q 007741          319 LLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA  362 (591)
Q Consensus       319 Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga  362 (591)
                      |++..|+|++.+|..|+||||+|+..+    +.+++++|++++.
T Consensus       235 Ll~~~gad~~~~d~~g~TpL~~A~~~g----~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          235 LLAVPSCDISLTDRDGSTALMVALDAG----QSEIASMLYSRMN  274 (276)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHHHT----CHHHHHHHHHHCC
T ss_pred             HHhcCCCCCcCcCCCCCCHHHHHHHcC----CHHHHHHHHhccC
Confidence            999679999999999999999999999    8999999987653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=2.5e-28  Score=224.40  Aligned_cols=168  Identities=23%  Similarity=0.236  Sum_probs=79.4

Q ss_pred             hHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCH
Q 007741          166 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV  245 (591)
Q Consensus       166 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~  245 (591)
                      ||||.|+..|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|+++ +.+++..+..|.||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCCCH
Confidence            3444444444444444444444332233334444444444444444444444433 222333444455555555555555


Q ss_pred             HHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCC
Q 007741          246 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT  325 (591)
Q Consensus       246 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~  325 (591)
                      +++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++ ++
T Consensus        83 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~-~~  159 (172)
T 3v30_A           83 DIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENH-IL  159 (172)
T ss_dssp             HHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HH
T ss_pred             HHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHHH-HH
Confidence            5555555555554 34455555555555555555555555555555 455555555555555555555555555552 55


Q ss_pred             CcccccCCCCCH
Q 007741          326 NVNALTRDHKTA  337 (591)
Q Consensus       326 d~~~~d~~G~t~  337 (591)
                      ++...|..|.||
T Consensus       160 ~~~~~~~~~~~p  171 (172)
T 3v30_A          160 KLFQSNLVPADP  171 (172)
T ss_dssp             HHSCC-------
T ss_pred             HHhcccCCCCCC
Confidence            555555555544

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=6.6e-28  Score=225.81  Aligned_cols=166  Identities=25%  Similarity=0.268  Sum_probs=129.9

Q ss_pred             cccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCC
Q 007741          119 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN  198 (591)
Q Consensus       119 ~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g  198 (591)
                      ..+++.+|..|.||||+|+..|+.+++++|++.+.+  ++..+..|.||||+|+..|+.+++++|+++++++ +..|..|
T Consensus        25 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g  101 (192)
T 2rfm_A           25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK--LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSG  101 (192)
T ss_dssp             HHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTS
T ss_pred             HHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc--cccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCC
Confidence            455778888999999999999999999999987654  5667788899999999999999999999888876 5566777


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCC
Q 007741          199 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS  278 (591)
Q Consensus       199 ~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  278 (591)
                      .||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~  179 (192)
T 2rfm_A          102 KTPLMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGR  179 (192)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTC
T ss_pred             CcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCc
Confidence            8888888888888888877776 4556666777777777777777777777777777776 5557777777777777777


Q ss_pred             HHHHHHHHHcC
Q 007741          279 CEVVKLLLEAD  289 (591)
Q Consensus       279 ~~~v~~Ll~~~  289 (591)
                      .+++++|++.+
T Consensus       180 ~~~v~~Ll~~~  190 (192)
T 2rfm_A          180 QEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            77777777654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=1.2e-27  Score=219.70  Aligned_cols=170  Identities=23%  Similarity=0.319  Sum_probs=149.4

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc
Q 007741          129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  208 (591)
Q Consensus       129 g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  208 (591)
                      +.||||.|+..|+.+++++|++.+.. .++..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDN-LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSG-GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcc-cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence            56899999999999999999997643 36778899999999999999999999999999987 66788999999999999


Q ss_pred             CCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHc
Q 007741          209 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA  288 (591)
Q Consensus       209 g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  288 (591)
                      |+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++
T Consensus        80 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           80 GYTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             TCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            999999999988 5667888999999999999999999999999999998 67799999999999999999999999999


Q ss_pred             CcccccCCCCCCCcH
Q 007741          289 DAAIVMLPDKFGNTA  303 (591)
Q Consensus       289 ~~~~~~~~d~~g~T~  303 (591)
                      +++ ....+..|.||
T Consensus       158 ~~~-~~~~~~~~~~p  171 (172)
T 3v30_A          158 ILK-LFQSNLVPADP  171 (172)
T ss_dssp             HHH-HSCC-------
T ss_pred             HHH-HhcccCCCCCC
Confidence            988 66667777776

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1.4e-30  Score=268.62  Aligned_cols=236  Identities=21%  Similarity=0.213  Sum_probs=159.4

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHh
Q 007741           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLK  150 (591)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~  150 (591)
                      +.++.||||.||+.|+.++|++|++...+                   ....+..|..|.||||+||..|+.++|++|++
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~-------------------~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~  149 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTS-------------------DEIVKVIQAENYQAFRLAAENGHLHVLNRLCE  149 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--C-------------------CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCc-------------------HHHHHHhccCCCCHHHHHHHcCCHHHHHHHHh
Confidence            45566999999999999999999876321                   11223445567889999999999999999999


Q ss_pred             cCCCc---cCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcc-cCCCCCCCHHHHHH-HcCCHHHHHHHHhcCCCcc
Q 007741          151 YSTKE---GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ-TTGPSNATPLVSAA-TRGHTAVVNELLSKDGGLL  225 (591)
Q Consensus       151 ~~~~~---~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~-~~~~~g~tpL~~A~-~~g~~~~v~~LL~~~~~~~  225 (591)
                      +|++.   ++...+   .||||+|+..|+.+++++|+++|+++.. ..|..|.||||+|+ ..|+.+++++|++++ .  
T Consensus       150 ~gad~~~~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a--  223 (376)
T 2aja_A          150 LAPTEIMAMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-V--  223 (376)
T ss_dssp             SCTTTHHHHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-H--
T ss_pred             CCCCccccccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC-C--
Confidence            87541   222222   7899999999999999999999887632 25667889999999 999999999998753 1  


Q ss_pred             eecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHH-------------------------
Q 007741          226 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE-------------------------  280 (591)
Q Consensus       226 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~-------------------------  280 (591)
                           .|.||||.|+..|+.+++++|++.++++. ..|    ++++.|+.+|+.+                         
T Consensus       224 -----~~~taL~~Aa~~g~~evv~lL~~~ga~~~-~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~  293 (376)
T 2aja_A          224 -----MLAYAEIHEFEYGEKYVNPFIARHVNRLK-EMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVL  293 (376)
T ss_dssp             -----HHHHHHHCTTTTTTTTHHHHHHHHHHHHH-HHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGG
T ss_pred             -----ccchHHHHHHHCCCHHHHHHHHhcCcccc-ccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhH
Confidence                 27889999999999999999998887763 222    2445555555443                         


Q ss_pred             --HHHHHHHcCcc--c--ccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 007741          281 --VVKLLLEADAA--I--VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLP  345 (591)
Q Consensus       281 --~v~~Ll~~~~~--~--~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~  345 (591)
                        .+++|++.+..  .  .....+.++||||+|+..|+.+++++|++.    ...++..|+|++++|...+
T Consensus       294 ~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~----~~v~~~~~~~~~~~~~~~~  360 (376)
T 2aja_A          294 LDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI----PSVLALTKANNYYINETGG  360 (376)
T ss_dssp             HHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS----HHHHHSCC-----------
T ss_pred             HHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC----hHHHHHHHHhccccccccc
Confidence              33344432110  0  112234577889999999999999999874    3677888889988888777

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=2e-27  Score=222.56  Aligned_cols=161  Identities=24%  Similarity=0.297  Sum_probs=131.6

Q ss_pred             ccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHH
Q 007741          158 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH  237 (591)
Q Consensus       158 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh  237 (591)
                      +.+|..|+||||+|+..|+.+++++|+++++++ +..+..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHH
Confidence            456778889999999999999999999888876 55677788888888888888888888887 4556677788888888


Q ss_pred             HHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHH
Q 007741          238 FAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT  317 (591)
Q Consensus       238 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~  317 (591)
                      +|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.++++
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCcHHHHH
Confidence            888888888888888888877 56678888888888888888888888888877 7777888888888888888888888


Q ss_pred             HHhcC
Q 007741          318 ELLSL  322 (591)
Q Consensus       318 ~Ll~~  322 (591)
                      +|++.
T Consensus       185 ~Ll~~  189 (192)
T 2rfm_A          185 IFTEV  189 (192)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            88763

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=2.4e-27  Score=215.39  Aligned_cols=152  Identities=26%  Similarity=0.359  Sum_probs=84.4

Q ss_pred             hHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCH
Q 007741          166 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV  245 (591)
Q Consensus       166 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~  245 (591)
                      ||||.|+..|+.+++++|+++++++ +..+..|.||||+|+. |+.+++++|+++ +.+++..+..|.||||+|+..|+.
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            7 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCH
Confidence            4555555555555555555544444 3334445555555444 555555555544 233444455555556666555566


Q ss_pred             HHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhc
Q 007741          246 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  321 (591)
Q Consensus       246 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~  321 (591)
                      +++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|++.++.+|..|+||||+|+..|+.+++++|++
T Consensus        84 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A           84 DTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            6666666555555 44455666666666666666666666666655455566666666666666666666666665

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=2.5e-27  Score=215.19  Aligned_cols=155  Identities=26%  Similarity=0.350  Sum_probs=70.9

Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC
Q 007741          131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH  210 (591)
Q Consensus       131 TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  210 (591)
                      ||||.|+..|+.+++++|++++.+  ++..+..|+||||+|+. |+.+++++|+++++++ +..+..|.||||+|+..|+
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            7 NELASAAARGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC--TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             hHHHHHHHcCCHHHHHHHHhCCCC--ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCC
Confidence            444444444444444444443322  23334444444444444 4444444444444443 2333444444444444444


Q ss_pred             HHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCc
Q 007741          211 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA  290 (591)
Q Consensus       211 ~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  290 (591)
                      .+++++|+++ +.+++..|.+|.||||+|+..|+.+++++|++++++..+..|..|+||||+|+..|+.+++++|+++|+
T Consensus        83 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           83 LDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            4444444443 233334444455555555555555555555555444334445555555555555555555555555544

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=5.6e-27  Score=214.23  Aligned_cols=159  Identities=23%  Similarity=0.307  Sum_probs=119.2

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHH
Q 007741          128 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT  207 (591)
Q Consensus       128 ~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  207 (591)
                      .|.||||.|+..|+.+++++|++.+..  ++..|..|.||||+|+..|+.+++++|+++++++ +..+..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV--INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence            467888888888888888888887533  5667778888888888888888888888887776 4556677777777777


Q ss_pred             cCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHH
Q 007741          208 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE  287 (591)
Q Consensus       208 ~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  287 (591)
                      .|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|++
T Consensus        79 ~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           79 KGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            7777777777776 4445666777777777777777777777777777766 5557777777777777777777777777


Q ss_pred             cCcc
Q 007741          288 ADAA  291 (591)
Q Consensus       288 ~~~~  291 (591)
                      ++..
T Consensus       157 ~~~~  160 (167)
T 3v31_A          157 HLLK  160 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1.4e-26  Score=212.25  Aligned_cols=156  Identities=31%  Similarity=0.476  Sum_probs=86.6

Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHH
Q 007741          127 ELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA  206 (591)
Q Consensus       127 ~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  206 (591)
                      ..+.|+|+.|++.|+.++|++|++++.+  ++..|..|.||||+|+..|+.+++++|+++++++                
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------------   73 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGAD--VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV----------------   73 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------------
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------------
Confidence            3445566666666666666666665432  3445555666666666666666666666655554                


Q ss_pred             HcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHH
Q 007741          207 TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL  286 (591)
Q Consensus       207 ~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  286 (591)
                                         +..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+
T Consensus        74 -------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll  133 (169)
T 2y1l_E           74 -------------------NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLL  133 (169)
T ss_dssp             -------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             -------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                               333444555555555555555555555555554 344555555555555555555555555


Q ss_pred             HcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhc
Q 007741          287 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  321 (591)
Q Consensus       287 ~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~  321 (591)
                      ++|++ ++.+|..|.||||+|+..|+.+++++|++
T Consensus       134 ~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          134 KNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             HTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            55555 45555555566666655555555555554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=7.6e-27  Score=213.32  Aligned_cols=156  Identities=21%  Similarity=0.261  Sum_probs=74.5

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCC
Q 007741          199 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS  278 (591)
Q Consensus       199 ~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  278 (591)
                      .||||.|+..|+.+++++|++. +..++..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             cchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCC
Confidence            3444444444444444444444 2223334444444444444444444444444444444 3334444555555555555


Q ss_pred             HHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHH
Q 007741          279 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA  358 (591)
Q Consensus       279 ~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~  358 (591)
                      .+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..+    ..+++++|.
T Consensus        82 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~----~~~~~~~L~  155 (167)
T 3v31_A           82 TDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALG----YRSVQQVIE  155 (167)
T ss_dssp             HHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHT----CHHHHHHHH
T ss_pred             HHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcC----cHHHHHHHH
Confidence            5555555554444 44444455555555555555555555554 24555555555555555555444    444444444


Q ss_pred             hcCc
Q 007741          359 RCGA  362 (591)
Q Consensus       359 ~~ga  362 (591)
                      ++++
T Consensus       156 ~~~~  159 (167)
T 3v31_A          156 SHLL  159 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1.6e-26  Score=211.70  Aligned_cols=159  Identities=31%  Similarity=0.404  Sum_probs=141.4

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHH
Q 007741          195 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV  274 (591)
Q Consensus       195 ~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  274 (591)
                      ...+.+||+.|+..|+.+++++|+++ +.+++..|.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAA   88 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHH
Confidence            44556777888888888888877776 4456667888999999999999999999999999988 677999999999999


Q ss_pred             hCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHH
Q 007741          275 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIK  354 (591)
Q Consensus       275 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~  354 (591)
                      ..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+..+    +.+++
T Consensus        89 ~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~----~~~~~  162 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNG----NEDLA  162 (169)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT----CHHHH
T ss_pred             HcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhC----CHHHH
Confidence            99999999999999998 888999999999999999999999999995 9999999999999999999999    89999


Q ss_pred             HHHHhcC
Q 007741          355 DCLARCG  361 (591)
Q Consensus       355 ~~L~~~g  361 (591)
                      ++|.+.|
T Consensus       163 ~~L~~~G  169 (169)
T 2y1l_E          163 EILQKLN  169 (169)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHcC
Confidence            9999876

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=7.8e-30  Score=245.99  Aligned_cols=177  Identities=18%  Similarity=0.109  Sum_probs=97.9

Q ss_pred             CCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHH
Q 007741          162 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR  241 (591)
Q Consensus       162 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~  241 (591)
                      ..|.||||.|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+.
T Consensus        19 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpLh~A~~   96 (229)
T 2vge_A           19 LNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITA-GANVNSPDSHGWTPLHCAAS   96 (229)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred             cchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHH
Confidence            34445555555555555555555555544 33444555555555555555555555554 33344455556666666666


Q ss_pred             cCCHHHHHHHHhcCcccccccCCCCCcHHHHH--HhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHH
Q 007741          242 QGHVDVVKALLSKDPQLARRTDKKGQTALHMA--VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  319 (591)
Q Consensus       242 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~L  319 (591)
                      .|+.+++++|++.|+++....+..|+||||+|  +..|+.+++++|++.|++ ++.+|..|.||+|.++..+..   ++|
T Consensus        97 ~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~~---~~l  172 (229)
T 2vge_A           97 CNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFGD---ELS  172 (229)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSCBCCSSTT---BCC
T ss_pred             cCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchHHHHHHhhcccc---ccC
Confidence            66666666666666655333234666666666  666666666666666665 555566666666644433322   344


Q ss_pred             hcCCCCC--cccccCCCCCHHHHHhhCC
Q 007741          320 LSLPDTN--VNALTRDHKTALDIAEGLP  345 (591)
Q Consensus       320 l~~~g~d--~~~~d~~G~t~L~~A~~~~  345 (591)
                      ++ .|++  ++.+|..|+||||+|+..+
T Consensus       173 l~-~ga~~~~~~~d~~G~TpL~~A~~~g  199 (229)
T 2vge_A          173 FR-EGESVTVLRRDGPEETDWWWAALHG  199 (229)
T ss_dssp             BC-TTCEEEEEESSCTTCSSEEEEEETT
T ss_pred             cc-ccccccccccCCCcccHHHHHHHcC
Confidence            44 3555  5556666666666666665

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=4e-27  Score=214.76  Aligned_cols=158  Identities=30%  Similarity=0.345  Sum_probs=92.8

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhC
Q 007741          197 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG  276 (591)
Q Consensus       197 ~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  276 (591)
                      .|.||||.|+..|+.++++.|++..+......+..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHc
Confidence            34445555555555555555554434444444555556666666666666666666666555 44466666666666666


Q ss_pred             CCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHH
Q 007741          277 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDC  356 (591)
Q Consensus       277 ~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~  356 (591)
                      |+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|.. +    +.+++++
T Consensus        86 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~~-~----~~~i~~~  158 (165)
T 3twr_A           86 GHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVKD-G----DTDIQDL  158 (165)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTGGGSCT-T----CHHHHHH
T ss_pred             CcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChhHhHhc-C----ChHHHHH
Confidence            666666666666665 555666666666666666666666666663 66666666666666666554 3    4566666


Q ss_pred             HHhcCc
Q 007741          357 LARCGA  362 (591)
Q Consensus       357 L~~~ga  362 (591)
                      |.+.|+
T Consensus       159 L~~~gA  164 (165)
T 3twr_A          159 LRGDAA  164 (165)
T ss_dssp             HHTC--
T ss_pred             Hhhccc
Confidence            666554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=2.1e-26  Score=207.29  Aligned_cols=149  Identities=29%  Similarity=0.386  Sum_probs=77.4

Q ss_pred             hHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCH
Q 007741          166 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV  245 (591)
Q Consensus       166 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~  245 (591)
                      |+||.|+..|+.+++++|++.+++..  .+..|.||||+|+..|+.+++++|+++ +.+++..+..|.||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcChH
Confidence            34444444444444444444443321  233344444444444444444444433 222333445555555555555555


Q ss_pred             HHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHH
Q 007741          246 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  319 (591)
Q Consensus       246 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~L  319 (591)
                      +++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus        81 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           81 NIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            5555555555555 44455666666666666666666666666655 555566666666666666666666554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=9.7e-27  Score=215.30  Aligned_cols=163  Identities=23%  Similarity=0.341  Sum_probs=71.0

Q ss_pred             hHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCH
Q 007741          166 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV  245 (591)
Q Consensus       166 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~  245 (591)
                      ++||.|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.
T Consensus         7 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~   85 (179)
T 3f6q_A            7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHR   85 (179)
T ss_dssp             CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCH
Confidence            3333333333333333333332222233333333333333333333333333333 222333344444444444444444


Q ss_pred             HHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCC
Q 007741          246 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT  325 (591)
Q Consensus       246 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~  325 (591)
                      +++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++ .|+
T Consensus        86 ~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~~-~g~  162 (179)
T 3f6q_A           86 DIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEK-MGQ  162 (179)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHHH-hhc
Confidence            4444444444444 33344455555555555555555555555444 44445555555555555555555555554 244


Q ss_pred             CcccccC
Q 007741          326 NVNALTR  332 (591)
Q Consensus       326 d~~~~d~  332 (591)
                      +++..+.
T Consensus       163 ~~~~~~~  169 (179)
T 3f6q_A          163 NLNRIPY  169 (179)
T ss_dssp             CCSCBCC
T ss_pred             CcccCCc
Confidence            4444433

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=1e-28  Score=238.22  Aligned_cols=192  Identities=20%  Similarity=0.196  Sum_probs=167.0

Q ss_pred             ccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCH
Q 007741          122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP  201 (591)
Q Consensus       122 ~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp  201 (591)
                      .+..+..|.||||.|+..|+.++|++|++.+.+  ++..|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||
T Consensus        14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tp   90 (229)
T 2vge_A           14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMND--PSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTP   90 (229)
T ss_dssp             CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCH
T ss_pred             ccccccchhHHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCH
Confidence            445566778899999999999999999998764  5778999999999999999999999999999998 6778899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcceecC-CCCCcHHHHH--HHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCC
Q 007741          202 LVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFA--ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS  278 (591)
Q Consensus       202 L~~A~~~g~~~~v~~LL~~~~~~~~~~~-~~g~tpLh~A--~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  278 (591)
                      ||+|+..|+.+++++|++++ .+++..+ .+|.||||+|  +..|+.+++++|++.|+++ +..|..|.|++|.++..+.
T Consensus        91 Lh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~~l~~~~~~~~  168 (229)
T 2vge_A           91 LHCAASCNDTVICMALVQHG-AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEFG  168 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHTTT-CCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEEEESSCBCCSST
T ss_pred             HHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCchHHHHHHhhccc
Confidence            99999999999999999984 4455554 6999999999  9999999999999999998 6678899999997665543


Q ss_pred             HHHHHHHHHcCccc-ccCCCCCCCcHHHHHHHcCcHHHHHHHhc
Q 007741          279 CEVVKLLLEADAAI-VMLPDKFGNTALHVATRKKRTEIVTELLS  321 (591)
Q Consensus       279 ~~~v~~Ll~~~~~~-~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~  321 (591)
                      .   ++|++.|+++ ++.+|.+|+||||+|+..|+.++|+.++-
T Consensus       169 ~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l  209 (229)
T 2vge_A          169 D---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF  209 (229)
T ss_dssp             T---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred             c---ccCccccccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence            3   5778888764 67789999999999999999999876543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=1.5e-26  Score=213.97  Aligned_cols=165  Identities=19%  Similarity=0.294  Sum_probs=152.9

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHh
Q 007741          196 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK  275 (591)
Q Consensus       196 ~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  275 (591)
                      ..+.++|+.|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            356799999999999999999999988888899999999999999999999999999999998 6779999999999999


Q ss_pred             CCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHH
Q 007741          276 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKD  355 (591)
Q Consensus       276 ~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~  355 (591)
                      .|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++. |++++.+|..|+|||++|...+    ..++++
T Consensus        82 ~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~----~~~~~~  155 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPL----RELLRE  155 (179)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCHHH----HHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHHHH----HHHHHH
Confidence            9999999999999998 889999999999999999999999999994 9999999999999999998877    889999


Q ss_pred             HHHhcCcccccc
Q 007741          356 CLARCGAVRANE  367 (591)
Q Consensus       356 ~L~~~ga~~~~~  367 (591)
                      +|.+.|+.....
T Consensus       156 ~L~~~g~~~~~~  167 (179)
T 3f6q_A          156 RAEKMGQNLNRI  167 (179)
T ss_dssp             HHHHTTCCCSCB
T ss_pred             HHHHhhcCcccC
Confidence            999999986543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=4.1e-26  Score=205.37  Aligned_cols=151  Identities=27%  Similarity=0.377  Sum_probs=140.0

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc
Q 007741          129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  208 (591)
Q Consensus       129 g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  208 (591)
                      ..||||.|+..|+.+++++|++.+.+.+   .+..|.||||+|+..|+.+++++|+++++++ +..+..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            4689999999999999999999886532   5788999999999999999999999999987 66788999999999999


Q ss_pred             CCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHH
Q 007741          209 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  285 (591)
Q Consensus       209 g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  285 (591)
                      |+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|
T Consensus        78 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           78 GHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ChHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999988 5667888999999999999999999999999999998 67799999999999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.4e-26  Score=211.05  Aligned_cols=159  Identities=24%  Similarity=0.367  Sum_probs=79.2

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHH
Q 007741          126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  205 (591)
Q Consensus       126 n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  205 (591)
                      |.+|.||||.|+..|+.+++++|++.+ ..+....+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   82 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA   82 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence            445566666666666666666666542 2334445555556666666666666666666665554 33444455555555


Q ss_pred             HHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHH
Q 007741          206 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  285 (591)
Q Consensus       206 ~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  285 (591)
                      +..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+. ++.+++++|
T Consensus        83 ~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           83 CSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHcCcHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHH
Confidence            555555555555544 2333344444444444444444444444444444443 3334444444444333 444444444


Q ss_pred             HHcC
Q 007741          286 LEAD  289 (591)
Q Consensus       286 l~~~  289 (591)
                      +++|
T Consensus       160 ~~~g  163 (165)
T 3twr_A          160 RGDA  163 (165)
T ss_dssp             HTC-
T ss_pred             hhcc
Confidence            4433

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=4.7e-26  Score=205.48  Aligned_cols=153  Identities=27%  Similarity=0.396  Sum_probs=82.2

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc
Q 007741          129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  208 (591)
Q Consensus       129 g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  208 (591)
                      +.||||.|+..|+.+++++|++. ...+.+..+..|.||||+ +..|+.+++++|+++|+++ +..|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence            34666666666666666666665 333455566666666666 6666666666666666655 34444555555555555


Q ss_pred             CCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHH
Q 007741          209 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE  287 (591)
Q Consensus       209 g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  287 (591)
                      |+.+++++|+++ +.+++..|.+|.||||+|+..|+.+++++|++. +++ +..|..|.||||+|+..|+.+++++|++
T Consensus        79 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           79 GFLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             TCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             CcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            555555555544 233444444445555555555555555544444 333 3334444444444444444444444443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=6.3e-26  Score=204.64  Aligned_cols=154  Identities=27%  Similarity=0.334  Sum_probs=117.6

Q ss_pred             CChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcC
Q 007741          164 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG  243 (591)
Q Consensus       164 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g  243 (591)
                      |.||||.|+..|+.++++.|++..+...+..+..|.||||+ +..|+.+++++|+++ +.+++..|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcC
Confidence            45788888888888888888877332335667778888888 777888888888877 4556677777888888888888


Q ss_pred             CHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcC
Q 007741          244 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL  322 (591)
Q Consensus       244 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~  322 (591)
                      +.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|++. ++ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus        80 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            888888888887776 55677788888888888888888888877 54 677777888888888888888888887763

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=7.8e-29  Score=255.59  Aligned_cols=222  Identities=19%  Similarity=0.157  Sum_probs=167.2

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCcc-CccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCc--ccCCCCCCCHH
Q 007741          126 NELGETALFTAADKGHIEVVNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS--QTTGPSNATPL  202 (591)
Q Consensus       126 n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~-~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpL  202 (591)
                      +.++.||||+||+.|+.++|++|++.++... ....+..|.||||+|+..|+.++|++|+++|++..  ...+.+ .|||
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            3445699999999999999999999876321 12345568899999999999999999999997531  112222 8999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccee--cCCCCCcHHHHHH-HcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCH
Q 007741          203 VSAATRGHTAVVNELLSKDGGLLEI--SRSNGKNALHFAA-RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC  279 (591)
Q Consensus       203 ~~A~~~g~~~~v~~LL~~~~~~~~~--~~~~g~tpLh~A~-~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  279 (591)
                      |+|+..|+.+++++|++++ .+++.  .|..|.||||+|+ ..|+.+++++|++.|++        |.||||+|+.+|+.
T Consensus       168 h~Aa~~G~~eiv~~Ll~~g-a~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~g~~  238 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELA-PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LAYAEIHEFEYGEK  238 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSC-GGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HHHHHHCTTTTTTT
T ss_pred             HHHHHCCCHHHHHHHHHcC-CccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cchHHHHHHHCCCH
Confidence            9999999999999999984 44444  6788999999999 99999999999996632        78999999999999


Q ss_pred             HHHHHHHHcCcccccCCCCCCCcHHHHHHHc---------------------------CcHHHHHHHhcCCCCC----cc
Q 007741          280 EVVKLLLEADAAIVMLPDKFGNTALHVATRK---------------------------KRTEIVTELLSLPDTN----VN  328 (591)
Q Consensus       280 ~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~---------------------------g~~~iv~~Ll~~~g~d----~~  328 (591)
                      +++++|+++|++ ++..|    ++++.|+..                           +..+.+++|++..+++    ..
T Consensus       239 evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g  313 (376)
T 2aja_A          239 YVNPFIARHVNR-LKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA  313 (376)
T ss_dssp             THHHHHHHHHHH-HHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCC
T ss_pred             HHHHHHHhcCcc-ccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccC
Confidence            999999998876 22222    122333322                           3345667776643221    12


Q ss_pred             cccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCccccc
Q 007741          329 ALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRAN  366 (591)
Q Consensus       329 ~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~  366 (591)
                      ...+.+.|||++|+..|    +.+++++|++.|..+..
T Consensus       314 ~~~n~~~~~L~~A~~~g----~~e~v~lLl~~~~v~~~  347 (376)
T 2aja_A          314 TIPGDANELLRLALRLG----NQGACALLLSIPSVLAL  347 (376)
T ss_dssp             SSTTCCCHHHHHHHHHT----CTTHHHHHTTSHHHHHS
T ss_pred             CCCCCccHHHHHHHHcC----cHHHHHHHHcChHHHHH
Confidence            23346778999999999    88899999988765443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=1.1e-26  Score=225.68  Aligned_cols=209  Identities=16%  Similarity=0.142  Sum_probs=137.8

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHH
Q 007741          126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  205 (591)
Q Consensus       126 n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  205 (591)
                      +..|.||||.|++.|+.+.++.|+++|.+.+.   +..|.||||.|+..|+.+++++|++.++++ +..|..|.||||+|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNA   77 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCccc---CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence            34689999999999999999999998876543   356899999999999999999999999987 66788999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCC-cHHHHH--HhCCCHHHH
Q 007741          206 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ-TALHMA--VKGQSCEVV  282 (591)
Q Consensus       206 ~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~~v  282 (591)
                      +..|+.+++++|+++ +.+++..|.+|.||||+|+..|+.+++++|+++|+++ +..|..|. ||||+|  +..|+.+++
T Consensus        78 ~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~  155 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCS  155 (239)
T ss_dssp             HHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             HHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHH
Confidence            999999999999988 5667888999999999999999999999999999998 45565555 999999  788999999


Q ss_pred             HHHHHcCcccccCC---------CCCCCcHHHHHHHcCcHHHHHHHhcCCCCC------cccccCCCCCHHHHHhhC
Q 007741          283 KLLLEADAAIVMLP---------DKFGNTALHVATRKKRTEIVTELLSLPDTN------VNALTRDHKTALDIAEGL  344 (591)
Q Consensus       283 ~~Ll~~~~~~~~~~---------d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d------~~~~d~~G~t~L~~A~~~  344 (591)
                      ++|++++++ .+..         |..+.++++++...|.  +++.|.+ .+.+      ....++.|.+|.++....
T Consensus       156 ~~Ll~~~a~-~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~-~~~~~~~Ww~~~~~~~~G~~P~~yv~~~  228 (239)
T 1ycs_B          156 QFLYGVQEK-MGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHR-EDEDEIEWWWARLNDKEGYVPRNLLGLY  228 (239)
T ss_dssp             HHHHHHHHH-TTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCC-CTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             HHHHHhhhc-ccccccceEEEEeccCCCCCCcccccCCC--EEEEEEe-cCCCCCCEEEEEECCcEEEeehHHeeEC
Confidence            999998876 3333         5667788888777765  3333333 2222      234455566666655443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=1.3e-26  Score=225.05  Aligned_cols=178  Identities=19%  Similarity=0.204  Sum_probs=128.8

Q ss_pred             CCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHH
Q 007741          162 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR  241 (591)
Q Consensus       162 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~  241 (591)
                      ..|.||||.|+..|+.++++.|+++|.++..  +..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTT-SSCCCCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHH
Confidence            4589999999999999999999999998843  467899999999999999999999884 4788889999999999999


Q ss_pred             cCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCC-cHHHHH--HHcCcHHHHHH
Q 007741          242 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN-TALHVA--TRKKRTEIVTE  318 (591)
Q Consensus       242 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~-T~Lh~A--~~~g~~~iv~~  318 (591)
                      .|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|. ||||+|  +..|+.+++++
T Consensus        80 ~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             HTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            99999999999999998 77799999999999999999999999999998 677777776 999999  78899999999


Q ss_pred             HhcCCCCCcccc---------cCCCCCHHHHHhhCC
Q 007741          319 LLSLPDTNVNAL---------TRDHKTALDIAEGLP  345 (591)
Q Consensus       319 Ll~~~g~d~~~~---------d~~G~t~L~~A~~~~  345 (591)
                      |++. |++++..         +..|.++++++.+.+
T Consensus       158 Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G  192 (239)
T 1ycs_B          158 LYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEG  192 (239)
T ss_dssp             HHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred             HHHh-hhcccccccceEEEEeccCCCCCCcccccCC
Confidence            9984 7777665         566788888777655

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=4.8e-24  Score=192.51  Aligned_cols=144  Identities=19%  Similarity=0.229  Sum_probs=100.9

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCc-HHHH
Q 007741          194 TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT-ALHM  272 (591)
Q Consensus       194 ~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~Lh~  272 (591)
                      .+..|.||||+|+..|+.+++++|+++ +..++..|..|.||||+|+ .|+.+++++|++.|+++ +..|..|+| |||+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD   84 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence            345566777777777777777777766 4455666778888888875 78888888888888877 666888888 9999


Q ss_pred             HHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 007741          273 AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  342 (591)
Q Consensus       273 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~  342 (591)
                      |+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||.+-+.
T Consensus        85 A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC------------------
T ss_pred             HHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccCC
Confidence            9999999999999998887 78888999999999999999999999998 48999999999999877543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=2.7e-24  Score=199.90  Aligned_cols=156  Identities=17%  Similarity=0.096  Sum_probs=120.3

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCcceecC-CCCCcHHHHHHHcCCH----HHHHHHHhcCcccccccCCCCCcHHHH
Q 007741          198 NATPLVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFAARQGHV----DVVKALLSKDPQLARRTDKKGQTALHM  272 (591)
Q Consensus       198 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~-~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  272 (591)
                      +.++|+.|+..|+.+.++.++..+.   +..+ ..|+||||+|+..|+.    +++++|+++|+++ +.+|..|+||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHH
Confidence            3467777888888777777776542   2233 5688888888887764    4788888888887 6667888888888


Q ss_pred             HHhCCC------HHHHHHHHHcCcccccCCCCCCC-cHHHHHHHcC-----cHHHHHHHhcCCCCCcccccCCCCCHHHH
Q 007741          273 AVKGQS------CEVVKLLLEADAAIVMLPDKFGN-TALHVATRKK-----RTEIVTELLSLPDTNVNALTRDHKTALDI  340 (591)
Q Consensus       273 A~~~~~------~~~v~~Ll~~~~~~~~~~d~~g~-T~Lh~A~~~g-----~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~  340 (591)
                      |+..++      .+++++|+++|++ ++.+|..|+ ||||+|+..+     +.+++++|++..|+|++.+|..|+||||+
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~  160 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF  160 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHH
Confidence            887776      5778888888888 788888888 8898888843     45688888885588999999999999999


Q ss_pred             HhhCCCChhhHHHHHHHHhcCc
Q 007741          341 AEGLPSSEEASEIKDCLARCGA  362 (591)
Q Consensus       341 A~~~~~~~~~~~i~~~L~~~ga  362 (591)
                      |.+.+    ..+++++|.++..
T Consensus       161 A~~~~----~~~~v~~L~~~~~  178 (186)
T 3t8k_A          161 VKRCQ----KPIALKMMEDYIK  178 (186)
T ss_dssp             HHTTT----CHHHHHHHHHHHH
T ss_pred             HHHcC----CHHHHHHHHHHHH
Confidence            98888    7777777776544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=1e-23  Score=185.71  Aligned_cols=131  Identities=19%  Similarity=0.225  Sum_probs=77.5

Q ss_pred             cceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCC-CCc
Q 007741          224 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF-GNT  302 (591)
Q Consensus       224 ~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~-g~T  302 (591)
                      .++..+..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+. ++.+++++|+++|++ ++.+|.. |+|
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t   80 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTR   80 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBC
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCC
Confidence            34445555666666666666666666666665555 4445556666666666 666666666666555 5555555 566


Q ss_pred             HHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCc
Q 007741          303 ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA  362 (591)
Q Consensus       303 ~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga  362 (591)
                      |||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..+    ..+++++|+++|+
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~----~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQG----HRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHT----CHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcC----CHHHHHHHHHcCC
Confidence            6666666666666666665 35666666666666666666555    5556666655554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=1.3e-23  Score=189.69  Aligned_cols=143  Identities=24%  Similarity=0.331  Sum_probs=64.4

Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCC-H
Q 007741          123 NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT-P  201 (591)
Q Consensus       123 ~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t-p  201 (591)
                      +..+..|.||||+|+..|+.++|++|++++.+  ++..+..|+||||+|+ .|+.+++++|+++|+++ +..|..|.| |
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttp   81 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGAN--PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRP   81 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCC--TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHH
Confidence            34455555666666666666666666654432  3444555555555553 55555555555555554 334444444 5


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHH
Q 007741          202 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH  271 (591)
Q Consensus       202 L~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  271 (591)
                      ||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||.+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~  149 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HHHHHHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccc
Confidence            5555555555555555544 3334444444455555555545555555555444444 333444444433

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=2.6e-23  Score=183.04  Aligned_cols=128  Identities=25%  Similarity=0.416  Sum_probs=54.8

Q ss_pred             ccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCC-CCC
Q 007741          122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS-NAT  200 (591)
Q Consensus       122 ~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-g~t  200 (591)
                      ++..|..|.||||+|+..|+.+++++|++++.+  ++..|..|+||||+|+. |+.+++++|+++++++ +..|.. |.|
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t   80 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD--PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTR   80 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBC
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC--cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCC
Confidence            444444444444444444444444444444322  23344444444444444 4444444444444443 222333 344


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 007741          201 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK  254 (591)
Q Consensus       201 pL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~  254 (591)
                      |||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT-CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            44444444444444444433 222333333444444444444444444444433

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=1e-23  Score=196.04  Aligned_cols=154  Identities=19%  Similarity=0.113  Sum_probs=103.5

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCccCccCC-CCCChHHHHHHHhCcH----HHHHHHHhCCCCCcccCCCCCCCHHH
Q 007741          129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKN-RSGFDPLHIAAVQGHH----AIVQVLLDHDPSLSQTTGPSNATPLV  203 (591)
Q Consensus       129 g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-~~g~t~Lh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~  203 (591)
                      +.++|+.|++.|+.+.++.+++.+.    +..+ ..|+||||+|+.+|+.    +++++|+++|+++ +..|..|+||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~----~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY----EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS----SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc----ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence            4578888888888888888887542    2233 5688888888888864    4888888888887 566778888888


Q ss_pred             HHHHcCC------HHHHHHHHhcCCCcceecCCCCC-cHHHHHHHcC-----CHHHHHHHHh-cCcccccccCCCCCcHH
Q 007741          204 SAATRGH------TAVVNELLSKDGGLLEISRSNGK-NALHFAARQG-----HVDVVKALLS-KDPQLARRTDKKGQTAL  270 (591)
Q Consensus       204 ~A~~~g~------~~~v~~LL~~~~~~~~~~~~~g~-tpLh~A~~~g-----~~~~v~~Ll~-~~~~~~~~~d~~g~t~L  270 (591)
                      +|+..|+      .+++++|+++ +.+++..|..|. ||||+|+..+     +.+++++|++ .|+++ +.+|..|+|||
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL  158 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTAL  158 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHT-TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHC-CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHH
Confidence            8887776      4556666665 445566666666 6666666633     2345556665 55555 44555566666


Q ss_pred             HHHHhCCCHHHHHHHHHcC
Q 007741          271 HMAVKGQSCEVVKLLLEAD  289 (591)
Q Consensus       271 h~A~~~~~~~~v~~Ll~~~  289 (591)
                      |+|++.|+.+++++|.+..
T Consensus       159 ~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          159 EFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             HHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHH
Confidence            6666666666665555543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=2.9e-22  Score=176.25  Aligned_cols=123  Identities=32%  Similarity=0.368  Sum_probs=66.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc
Q 007741          231 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  310 (591)
Q Consensus       231 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~  310 (591)
                      .+.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHc
Confidence            3455555555555555555555555554 34455555555555555555555555555554 445555555555555555


Q ss_pred             CcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhc
Q 007741          311 KRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARC  360 (591)
Q Consensus       311 g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~  360 (591)
                      |+.+++++|++. |++++.+|..|+||||+|+..+    ..+++++|++.
T Consensus        91 ~~~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~----~~~~~~~Ll~~  135 (136)
T 2jab_A           91 GHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNG----NEDLAEILQKL  135 (136)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT----CHHHHHHHHHC
T ss_pred             CCHHHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCC----CHHHHHHHHHc
Confidence            555555555552 5555555555555555555555    45555555544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=7.1e-22  Score=170.62  Aligned_cols=121  Identities=46%  Similarity=0.643  Sum_probs=60.6

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCC
Q 007741          198 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ  277 (591)
Q Consensus       198 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  277 (591)
                      |.||||+|+..|+.+++++|+++ +..++..+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcC
Confidence            44555555555555555555544 2233444445555555555555555555555554444 333445555555555555


Q ss_pred             CHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhc
Q 007741          278 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  321 (591)
Q Consensus       278 ~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~  321 (591)
                      +.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++
T Consensus        80 ~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  122 (126)
T 1n0r_A           80 HLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE  122 (126)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            55555555555444 44444555555555555555555555544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.3e-21  Score=168.91  Aligned_cols=125  Identities=40%  Similarity=0.623  Sum_probs=75.9

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHH
Q 007741          128 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT  207 (591)
Q Consensus       128 ~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  207 (591)
                      +|.||||.|+..|+.+++++|++++.+  ++..+..|.||||+|+..|+.+++++|+++++++ +..+..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC--CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence            366777777777777777777776533  4455666677777777777777777777766665 3445555566666665


Q ss_pred             cCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCc
Q 007741          208 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP  256 (591)
Q Consensus       208 ~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~  256 (591)
                      .|+.+++++|+++ +..++..|..|.||||+|+..|+.+++++|+++|+
T Consensus        78 ~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           78 NGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             cChHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            5555555555555 33344445555555555555555555555555544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=1.2e-21  Score=172.32  Aligned_cols=125  Identities=27%  Similarity=0.378  Sum_probs=70.7

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHH
Q 007741          126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  205 (591)
Q Consensus       126 n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  205 (591)
                      ...|.||||+|+..|+.+++++|++++.+  ++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A   87 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGAD--VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLA   87 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence            34456666666666666666666665433  3455556666666666666666666666666554 33444555555555


Q ss_pred             HHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 007741          206 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK  254 (591)
Q Consensus       206 ~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~  254 (591)
                      +..|+.+++++|+++ +.+++..|.+|.||||+|+..|+.+++++|++.
T Consensus        88 ~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           88 AFIGHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            555555555555554 333444455555555555555555555555544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=2.5e-22  Score=176.83  Aligned_cols=127  Identities=25%  Similarity=0.295  Sum_probs=101.9

Q ss_pred             ecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHH
Q 007741          227 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV  306 (591)
Q Consensus       227 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~  306 (591)
                      ..|.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHH
Confidence            46778888888888888888888888888877 56688888888888888888888888888877 77788888888888


Q ss_pred             HHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhc
Q 007741          307 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARC  360 (591)
Q Consensus       307 A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~  360 (591)
                      |+..|+.+++++|++. |++++.+|..|+||||+|...+    ..+++++|.+.
T Consensus        83 A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~----~~~~l~~l~~~  131 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDDES----MKSLLLLPEKN  131 (137)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCCHH----HHHHHSCC---
T ss_pred             HHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhcc----HHHHHhhcccc
Confidence            8888888888888884 8888888888888888887555    55555554443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=8.6e-22  Score=182.70  Aligned_cols=143  Identities=22%  Similarity=0.233  Sum_probs=112.3

Q ss_pred             ccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHH
Q 007741          124 EVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLV  203 (591)
Q Consensus       124 ~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  203 (591)
                      ..+..|.||||+|+..|+.+++++|++ +.  +++..|..|+||||+|+..|+.+++++|+++|++++...+..|.||||
T Consensus        39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~--~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~  115 (183)
T 3deo_A           39 DVVSEYETPWWTAARKADEQALSQLLE-DR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTT-TS--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHh-cC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence            345678999999999999999999998 54  467788899999999999999999999999999885444477888888


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHH
Q 007741          204 SAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK  283 (591)
Q Consensus       204 ~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  283 (591)
                      +|+..|+.+++++|+++ +.+++..|.+|.||||+|+..++                  ...+.++|++|+..|..++++
T Consensus       116 ~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~~~~~i~~  176 (183)
T 3deo_A          116 MAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVIN  176 (183)
T ss_dssp             HHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHcCHHHHHH
Confidence            88888888888888877 45567778888888888876432                  134566777777777777777


Q ss_pred             HHHHc
Q 007741          284 LLLEA  288 (591)
Q Consensus       284 ~Ll~~  288 (591)
                      +|.++
T Consensus       177 ~L~~~  181 (183)
T 3deo_A          177 VLEGQ  181 (183)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            77653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=7.7e-22  Score=191.95  Aligned_cols=142  Identities=22%  Similarity=0.228  Sum_probs=101.0

Q ss_pred             cCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHH
Q 007741          125 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS  204 (591)
Q Consensus       125 ~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  204 (591)
                      .+..|.||||+|+..|+.++|++|++ +.  +++..|..|+||||+|+..|+.+++++|+++|++++...+..|.||||+
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~  117 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TC--CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CC--CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            34567888888888888888888888 43  4567788888888888888888888888888888744444667777777


Q ss_pred             HHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHH
Q 007741          205 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL  284 (591)
Q Consensus       205 A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~  284 (591)
                      |+..|+.+++++|+++ +.+++..|..|.||||+|+..++                  ...+.||||+|+..|+.+++++
T Consensus       118 A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~  178 (244)
T 3ui2_A          118 AAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINV  178 (244)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHH
Confidence            7777777777777766 45566667777777777764211                  2345566666666666666666


Q ss_pred             HHHc
Q 007741          285 LLEA  288 (591)
Q Consensus       285 Ll~~  288 (591)
                      |++.
T Consensus       179 L~~~  182 (244)
T 3ui2_A          179 LEGQ  182 (244)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=2.6e-21  Score=179.50  Aligned_cols=140  Identities=22%  Similarity=0.233  Sum_probs=120.2

Q ss_pred             CCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecC-CCCCcHHHHH
Q 007741          161 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFA  239 (591)
Q Consensus       161 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~-~~g~tpLh~A  239 (591)
                      +..|.||||.|+..|+.++++.|++ +.++ +..|..|.||||+|+..|+.+++++|++++ .+++..+ .+|.||||+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCCHHHHH
Confidence            4568899999999999999999999 7776 667889999999999999999999999884 5555566 8899999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHH
Q 007741          240 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  319 (591)
Q Consensus       240 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~L  319 (591)
                      +..|+.+++++|+++|+++ +.+|..|+||||+|++.++.                  ..+.++|++|+..|+.+++++|
T Consensus       118 ~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          118 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHH
Confidence            9999999999999999988 67799999999999863321                  3467899999999999999998


Q ss_pred             hcC
Q 007741          320 LSL  322 (591)
Q Consensus       320 l~~  322 (591)
                      .++
T Consensus       179 ~~~  181 (183)
T 3deo_A          179 EGQ  181 (183)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            763

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=1.2e-20  Score=189.16  Aligned_cols=140  Identities=24%  Similarity=0.250  Sum_probs=90.3

Q ss_pred             CChHHHHHHHhCcHHHHHHHHhCCCCCccc-----CCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCcceecCCCCCcH
Q 007741          164 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQT-----TGPSNATPLVSAATR---GHTAVVNELLSKDGGLLEISRSNGKNA  235 (591)
Q Consensus       164 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~~~v~~LL~~~~~~~~~~~~~g~tp  235 (591)
                      +.++||.|+..|+.+.++.|++.++++...     .+..|.||||+|+..   |+.+++++|+++ +.+++..|.+|.||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCCH
Confidence            346677777777777777777777776432     456666777777765   666777777766 44456666667777


Q ss_pred             HHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCc
Q 007741          236 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR  312 (591)
Q Consensus       236 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~  312 (591)
                      ||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++++++       .|.||||+|+..|+
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence            77777777777777777777666 55566777777777777777777777776654       36677777766654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=1.5e-21  Score=171.82  Aligned_cols=125  Identities=26%  Similarity=0.315  Sum_probs=76.6

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHH
Q 007741          194 TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA  273 (591)
Q Consensus       194 ~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  273 (591)
                      .|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A   83 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDA   83 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHH
Confidence            344555555555555555555555554 3334455556666666666666666666666666665 44566667777777


Q ss_pred             HhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhc
Q 007741          274 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  321 (591)
Q Consensus       274 ~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~  321 (591)
                      +..|+.+++++|+++|++ ++.+|..|+||||+|+..+..+++++|.+
T Consensus        84 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             HHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            777777777777776666 56667777777777776666666655544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=3.9e-21  Score=165.85  Aligned_cols=111  Identities=27%  Similarity=0.325  Sum_probs=99.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 007741          229 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  308 (591)
Q Consensus       229 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~  308 (591)
                      +..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHH
Confidence            456889999999999999999999999887 66788999999999999999999999999988 8888999999999999


Q ss_pred             HcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 007741          309 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  342 (591)
Q Consensus       309 ~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~  342 (591)
                      ..|+.+++++|++. |++++.+|..|+||||+|.
T Consensus        82 ~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCC
T ss_pred             HcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHhC
Confidence            99999999999995 9999999999999999984

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.84  E-value=5.6e-21  Score=185.82  Aligned_cols=167  Identities=21%  Similarity=0.210  Sum_probs=129.8

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHH
Q 007741          128 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT  207 (591)
Q Consensus       128 ~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  207 (591)
                      .+.+++.+++..|+.+.+..+...+     ...+..|.||||.|+..|+.++++.|++ +.++ +..|..|.||||+|+.
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~-----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~   86 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIA-----ADVVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAG   86 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSC-----HHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHH
T ss_pred             CCccHHHHHHHcCCCcccccccccc-----cccccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHH
Confidence            4556666666666665554443322     2234468899999999999999999999 7776 5677889999999999


Q ss_pred             cCCHHHHHHHHhcCCCcceecC-CCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHH
Q 007741          208 RGHTAVVNELLSKDGGLLEISR-SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL  286 (591)
Q Consensus       208 ~g~~~~v~~LL~~~~~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  286 (591)
                      .|+.+++++|+++ +.+++..+ ..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..++        
T Consensus        87 ~g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~--------  156 (244)
T 3ui2_A           87 LGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK--------  156 (244)
T ss_dssp             HTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT--------
T ss_pred             CCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh--------
Confidence            9999999999988 44555555 77899999999999999999999998887 6678889999999875211        


Q ss_pred             HcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhc
Q 007741          287 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  321 (591)
Q Consensus       287 ~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~  321 (591)
                                +..+.||||+|+..|+.+++++|++
T Consensus       157 ----------~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          157 ----------TTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             ----------TCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------ccCCCCHHHHHHHcChHHHHHHHHH
Confidence                      2457889999999999998888886

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=3.5e-20  Score=183.70  Aligned_cols=127  Identities=22%  Similarity=0.265  Sum_probs=101.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCcccc-----cccCCCCCcHHHHHHhC---CCHHHHHHHHHcCcccccCCCCCCCcH
Q 007741          232 GKNALHFAARQGHVDVVKALLSKDPQLA-----RRTDKKGQTALHMAVKG---QSCEVVKLLLEADAAIVMLPDKFGNTA  303 (591)
Q Consensus       232 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~~~~d~~g~T~  303 (591)
                      ..++|+.|+..|+.+.+..+++.|+++.     +..|..|+||||+|+..   |+.+++++|+++|++ ++.+|..|+||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~Tp  208 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCH
Confidence            3467888888888888888888877753     23377788888888887   788888888888887 77788888888


Q ss_pred             HHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCccc
Q 007741          304 LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  364 (591)
Q Consensus       304 Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  364 (591)
                      ||+|+..|+.+++++|++ .|+|++.+|..|+||||+|+..+    +.+++++|+++|+.+
T Consensus       209 Lh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~----~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLK----HEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT----CHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcC----CHHHHHHHHHcCCCC
Confidence            888888888888888888 48888888888888888888887    778888888887753

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=1.3e-20  Score=188.99  Aligned_cols=140  Identities=19%  Similarity=0.153  Sum_probs=115.7

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccc------cCCCCCcHHHHHHHh---CcHHH
Q 007741           74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNE------VNELGETALFTAADK---GHIEV  144 (591)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~n~~g~TpL~~Aa~~---g~~~~  144 (591)
                      +.++||.|+..|+.+.++.|++.                      +..++.      .|..|.||||+|+..   |+.++
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~----------------------g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~i  208 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFAN----------------------GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPL  208 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHT----------------------TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhc----------------------CCcccccCCCcccCCCCccHHHHHHHhcccCcHHH
Confidence            44779999999999999999976                      334444      588999999999997   89999


Q ss_pred             HHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc
Q 007741          145 VNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL  224 (591)
Q Consensus       145 v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~  224 (591)
                      +++|+++|++  ++..|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++++.  
T Consensus       209 v~~Ll~~gad--vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga--  283 (301)
T 2b0o_E          209 VDFIIQNGGH--LDAKAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQA--  283 (301)
T ss_dssp             HHHHHHHSSC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH--
T ss_pred             HHHHHhcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC--
Confidence            9999998765  5778899999999999999999999999999998 6788899999999999999999999998743  


Q ss_pred             ceecCCCCCcHHHHHHHcCCH
Q 007741          225 LEISRSNGKNALHFAARQGHV  245 (591)
Q Consensus       225 ~~~~~~~g~tpLh~A~~~g~~  245 (591)
                           ..|.||||+|+..|+.
T Consensus       284 -----~~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          284 -----GTFAFPLHVDYSWVIS  299 (301)
T ss_dssp             -----HTTSSCCC--------
T ss_pred             -----CCCCChhHHHHhcCCc
Confidence                 2578999999988764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=2.3e-20  Score=184.93  Aligned_cols=194  Identities=21%  Similarity=0.251  Sum_probs=145.2

Q ss_pred             ccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHH
Q 007741          124 EVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLV  203 (591)
Q Consensus       124 ~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  203 (591)
                      ..|..+.+.|+++...|+..+.+++............+ .+...    ......-..+++................++|+
T Consensus        61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~-~~s~~----~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~  135 (278)
T 1dcq_A           61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPN-PGSDM----IARKDYITAKYMERRYARKKHADTAAKLHSLC  135 (278)
T ss_dssp             TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCC-TTCCH----HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCC-CCCCH----HHHHHHHHHHHHHhhcccccccccchhhhhhh
Confidence            36778899999999999988877665432211110111 11112    11222223334444322221222222347899


Q ss_pred             HHHHcCCHHHHHHHHhcCCCc-----ceecCCCCCcHHHHHHHc---CCHHHHHHHHhcCcccccccCCCCCcHHHHHHh
Q 007741          204 SAATRGHTAVVNELLSKDGGL-----LEISRSNGKNALHFAARQ---GHVDVVKALLSKDPQLARRTDKKGQTALHMAVK  275 (591)
Q Consensus       204 ~A~~~g~~~~v~~LL~~~~~~-----~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  275 (591)
                      .|+..|+.+.+..+++.+...     ++..+..|.||||+|+..   |+.+++++|+++|+++ +..|..|+||||+|+.
T Consensus       136 ~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~  214 (278)
T 1dcq_A          136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCL  214 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHH
T ss_pred             hHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHH
Confidence            999999999999999885543     344578899999999999   8999999999999998 6779999999999999


Q ss_pred             CCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCC
Q 007741          276 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT  325 (591)
Q Consensus       276 ~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~  325 (591)
                      .|+.+++++|+++|++ ++.+|.+|.||||+|+..|+.+++++|++. |+
T Consensus       215 ~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga  262 (278)
T 1dcq_A          215 TDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQA-LS  262 (278)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HT
T ss_pred             cCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence            9999999999999998 899999999999999999999999999985 44

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.82  E-value=7.2e-21  Score=182.18  Aligned_cols=133  Identities=25%  Similarity=0.318  Sum_probs=79.9

Q ss_pred             ccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhC-CCCCcccCCCCCCC
Q 007741          122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-DPSLSQTTGPSNAT  200 (591)
Q Consensus       122 ~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~t  200 (591)
                      ++..+..|.||||+|+..|+.++|++|++.+.+  ++..|..|+||||+|+..|+.+++++|+++ +.++ +..|..|.|
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~t  142 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG--VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDT  142 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCC
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCC
Confidence            344566677777777777777777777775533  455666677777777777777777777776 5554 445556666


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCccc
Q 007741          201 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL  258 (591)
Q Consensus       201 pL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  258 (591)
                      |||+|+..|+.+++++|+++ +.+++..|.+|.||||+|+..|+.++++.|++.++..
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            66666666666666666665 3445555666666666666666666666666555543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.82  E-value=7.8e-21  Score=181.91  Aligned_cols=129  Identities=27%  Similarity=0.327  Sum_probs=71.8

Q ss_pred             CCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHH
Q 007741          160 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA  239 (591)
Q Consensus       160 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A  239 (591)
                      .+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++..+.+++..|..|.||||+|
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            3556778888888888888888888877765 445556666666666666666666666554444444555555555555


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCc
Q 007741          240 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA  290 (591)
Q Consensus       240 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  290 (591)
                      +..|+.+++++|+++|+++ +..|..|+||||+|+..++.++++.|++.++
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             HHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            5555555555555554444 3334444444444444444444444444443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=1.4e-20  Score=162.36  Aligned_cols=108  Identities=26%  Similarity=0.325  Sum_probs=61.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCC
Q 007741          198 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ  277 (591)
Q Consensus       198 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  277 (591)
                      |.||||+|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcC-CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcC
Confidence            444555555555555555555442 234444555556666666666666666666665555 444566666666666666


Q ss_pred             CHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 007741          278 SCEVVKLLLEADAAIVMLPDKFGNTALHVAT  308 (591)
Q Consensus       278 ~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~  308 (591)
                      +.+++++|+++|++ ++.+|.+|+||||+|.
T Consensus        85 ~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           85 HVSCVKLLLSKGAD-KTVKGPDGLTAFEATD  114 (123)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHCC
T ss_pred             CHHHHHHHHHcCCC-CCCcCCCCCCHHHHhC
Confidence            66666666666655 5556666666666663

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.78  E-value=8.9e-19  Score=179.78  Aligned_cols=147  Identities=20%  Similarity=0.229  Sum_probs=103.9

Q ss_pred             CCCCCcHhHHHHHc-CCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccC--CCCCcHHHHHHHhCcHHHHHH
Q 007741           71 GRHNDTELHLAAQR-GDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVN--ELGETALFTAADKGHIEVVNE  147 (591)
Q Consensus        71 ~~~g~t~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n--~~g~TpL~~Aa~~g~~~~v~~  147 (591)
                      +.++.|+||.|+.. |+.++++.||+.                      +..++..|  ..|.||||+|+..|+.++|++
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~----------------------Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~  253 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAH----------------------GADVNWVNGGQDNATPLIQATAANSLLACEF  253 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHT----------------------TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHc----------------------CCCCCccccccCCCCHHHHHHHCCCHHHHHH
Confidence            34566889999888 899999888876                      55677777  788899999999899999999


Q ss_pred             HHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc--c
Q 007741          148 LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL--L  225 (591)
Q Consensus       148 Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~--~  225 (591)
                      |+++|++  ++..|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+......  .
T Consensus       254 LL~~Gad--vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~  330 (368)
T 3jue_A          254 LLQNGAN--VNQADSAGRGPLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEA  330 (368)
T ss_dssp             HHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----
T ss_pred             HHHcCCC--CCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc
Confidence            8887654  5677888889999999888999999998888887 667788888888888888888888888764222  2


Q ss_pred             eecCCCCCcHHHHHHHc
Q 007741          226 EISRSNGKNALHFAARQ  242 (591)
Q Consensus       226 ~~~~~~g~tpLh~A~~~  242 (591)
                      ...+..+.|+++.+...
T Consensus       331 ~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          331 AQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             -----------------
T ss_pred             cccCCCCCCHHHHHHHH
Confidence            23345566666665543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=5.4e-19  Score=150.31  Aligned_cols=109  Identities=38%  Similarity=0.481  Sum_probs=99.0

Q ss_pred             ecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHH
Q 007741          227 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV  306 (591)
Q Consensus       227 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~  306 (591)
                      ..|.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..++.+++++|+++|++ ++.+|..|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence            46889999999999999999999999999987 66789999999999999999999999999988 78899999999999


Q ss_pred             HHHcCcHHHHHHHhcCCCCCcccccCCCCCHH
Q 007741          307 ATRKKRTEIVTELLSLPDTNVNALTRDHKTAL  338 (591)
Q Consensus       307 A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L  338 (591)
                      |+..|+.+++++|++ .|+++|.++..|.+|-
T Consensus        82 A~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDA-KGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHH-cCCCCCcCCccccccc
Confidence            999999999999998 5999999999999873

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=1.4e-18  Score=141.72  Aligned_cols=92  Identities=48%  Similarity=0.686  Sum_probs=63.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc
Q 007741          231 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  310 (591)
Q Consensus       231 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~  310 (591)
                      +|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHc
Confidence            3667777777777777777777777666 55567777777777777777777777777766 666677777777777777


Q ss_pred             CcHHHHHHHhcCCCC
Q 007741          311 KRTEIVTELLSLPDT  325 (591)
Q Consensus       311 g~~~iv~~Ll~~~g~  325 (591)
                      |+.+++++|++. |+
T Consensus        79 ~~~~~~~~Ll~~-ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLEA-GA   92 (93)
T ss_dssp             TCHHHHHHHHHT-TC
T ss_pred             CCHHHHHHHHHc-CC
Confidence            777777777763 44

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.77  E-value=1.1e-18  Score=179.21  Aligned_cols=144  Identities=19%  Similarity=0.211  Sum_probs=84.7

Q ss_pred             CCCHHHHHHHc-CCHHHHHHHHhcCCCcceecC--CCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHH
Q 007741          198 NATPLVSAATR-GHTAVVNELLSKDGGLLEISR--SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV  274 (591)
Q Consensus       198 g~tpL~~A~~~-g~~~~v~~LL~~~~~~~~~~~--~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  274 (591)
                      +.|+||.|+.. |+.++++.|+++ +.+++..+  ..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~  276 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHAT  276 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            34567777776 777777777765 34445555  66777777777777777777777777766 555777777777777


Q ss_pred             hCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcC--CCCCcccccCCCCCHHHHHhhC
Q 007741          275 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL--PDTNVNALTRDHKTALDIAEGL  344 (591)
Q Consensus       275 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~--~g~d~~~~d~~G~t~L~~A~~~  344 (591)
                      ..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|+..  .+.+....+..+.|+++++...
T Consensus       277 ~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          277 ILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            77777777777777766 666777777777777777777777777652  2334445556666777666544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.76  E-value=2.4e-18  Score=140.34  Aligned_cols=68  Identities=38%  Similarity=0.605  Sum_probs=33.1

Q ss_pred             cccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCC
Q 007741          119 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP  188 (591)
Q Consensus       119 ~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~  188 (591)
                      +..++.+|..|.||||+|+..|+.+++++|+++|++  ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        25 g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~--~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            333444455555555555555555555555554332  33444445555555555555555555555443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.72  E-value=2e-17  Score=140.55  Aligned_cols=90  Identities=33%  Similarity=0.515  Sum_probs=37.6

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHH
Q 007741          126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  205 (591)
Q Consensus       126 n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  205 (591)
                      |.+|.||||+|+..|+.+++++|++++.+  ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD--VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA   82 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCC--SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence            44444444444444444444444443322  2333444444444444444444444444444443 22333333333333


Q ss_pred             HHcCCHHHHHHHH
Q 007741          206 ATRGHTAVVNELL  218 (591)
Q Consensus       206 ~~~g~~~~v~~LL  218 (591)
                      +..|+.+++++|+
T Consensus        83 ~~~~~~~~~~~Ll   95 (115)
T 2l6b_A           83 KKNGHHEIVKLLD   95 (115)
T ss_dssp             HTTTCHHHHHHHH
T ss_pred             HHCCCHHHHHHHH
Confidence            3333333333333

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.63  E-value=6e-16  Score=130.31  Aligned_cols=91  Identities=37%  Similarity=0.488  Sum_probs=66.2

Q ss_pred             ecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHH
Q 007741          227 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV  306 (591)
Q Consensus       227 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~  306 (591)
                      ..|.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDI   96 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHHHH
Confidence            34567777777777777777777777777766 55577777777777777777777777777776 66777777777777


Q ss_pred             HHHcCcHHHHHHH
Q 007741          307 ATRKKRTEIVTEL  319 (591)
Q Consensus       307 A~~~g~~~iv~~L  319 (591)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            7777777777765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.63  E-value=1e-15  Score=128.88  Aligned_cols=96  Identities=22%  Similarity=0.318  Sum_probs=78.2

Q ss_pred             cccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCC
Q 007741          119 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN  198 (591)
Q Consensus       119 ~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g  198 (591)
                      +......|.+|.||||+|+..|+.+++++|++.+.  +++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|
T Consensus        14 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g   90 (110)
T 2zgd_A           14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGA--DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFG   90 (110)
T ss_dssp             --------CCHHHHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred             CCcccccCCccchHHHHHHHcCCHHHHHHHHHcCC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCC
Confidence            44567788899999999999999999999999764  45677889999999999999999999999999887 5677889


Q ss_pred             CCHHHHHHHcCCHHHHHHH
Q 007741          199 ATPLVSAATRGHTAVVNEL  217 (591)
Q Consensus       199 ~tpL~~A~~~g~~~~v~~L  217 (591)
                      .||||+|+..|+.+++++|
T Consensus        91 ~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHh
Confidence            9999999999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	591
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-32
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-26
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-32
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-29
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-25
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-24
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-22
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-15
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-21
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-21
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-20
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-20
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-17
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-16
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-16
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-17
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	8e-09
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	6e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-06
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-06
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.001

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 1e-32
 Identities = 75/267 (28%), Positives = 108/267 (40%), Gaps = 31/267 (11%)

Query: 76  TELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           T LH+A+  G L  VK +L  G                          N  N   ET L 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-----------------------PNVSNVKVETPLH 38

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 194
            AA  GH EV   LL+   K  +  K +    PLH AA  GH  +V++LL+++ + +   
Sbjct: 39  MAARAGHTEVAKYLLQNKAK--VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA- 95

Query: 195 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 254
             +     +  A R         L +           G   LH AA+ G V V + LL +
Sbjct: 96  -TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 154

Query: 255 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 314
           D        K G T LH+AV   + ++VKLLL    +    P   G T LH+A ++ + E
Sbjct: 155 DAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVE 212

Query: 315 IVTELLSLPDTNVNALTRDHKTALDIA 341
           +   LL     + NA +    T L +A
Sbjct: 213 VARSLLQ-YGGSANAESVQGVTPLHLA 238

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (274), Expect = 1e-26
 Identities = 76/302 (25%), Positives = 113/302 (37%), Gaps = 60/302 (19%)

Query: 69  VTGRHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNE 127
           V+    +T LH+AA+ G     K +L                            VN   +
Sbjct: 28  VSNVKVETPLHMAARAGHTEVAKYLLQNKAK-----------------------VNAKAK 64

Query: 128 LGETALFTAADKGHIEVVNELLKY-------------------------------STKEG 156
             +T L  AA  GH  +V  LL+                                  +  
Sbjct: 65  DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS 124

Query: 157 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNE 216
                + GF PLH+AA  G   + ++LL+ D   +   G +  TPL  A    +  +V +
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIV-K 182

Query: 217 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 276
           LL   GG       NG   LH AA+Q  V+V ++LL      A     +G T LH+A + 
Sbjct: 183 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQE 241

Query: 277 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 336
              E+V  LL +  A   L +K G T LH+  ++    +   L+      V+A TR   T
Sbjct: 242 GHAEMVA-LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYT 299

Query: 337 AL 338
            L
Sbjct: 300 PL 301

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (274), Expect = 1e-26
 Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 17/273 (6%)

Query: 72  RHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGN-------LSGAEFDTEVAEIRSSV-- 121
           +   T LH+AA+ G +   + +L         G        ++    + ++ ++      
Sbjct: 130 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 189

Query: 122 -VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIV 180
             +     G T L  AA +  +EV   LL+Y        ++  G  PLH+AA +GH  +V
Sbjct: 190 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA--NAESVQGVTPLHLAAQEGHAEMV 247

Query: 181 QVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 240
            +LL    + +     S  TPL   A  GH  V + L+   G +++ +   G   LH A+
Sbjct: 248 ALLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVAS 305

Query: 241 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG 300
             G++ +VK  L +         K G + LH A +    ++V LLL+  A+        G
Sbjct: 306 HYGNIKLVK-FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDG 363

Query: 301 NTALHVATRKKRTEIVTELLSLPDTNVNALTRD 333
            T L +A R     +   L  + D     L  D
Sbjct: 364 TTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  123 bits (310), Expect = 9e-32
 Identities = 47/293 (16%), Positives = 79/293 (26%), Gaps = 65/293 (22%)

Query: 71  GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGE 130
           G  ++    +AA  G   A+  +   + S                      V  +     
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLLLTS-------DEI------------VKVIQAENY 127

Query: 131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 190
            A   AA+ GH+ V+N L + +  E +       +    +AA  GH  ++  L +  P+ 
Sbjct: 128 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 187

Query: 191 SQTT----------------------------GPSNATPLVSAATRGHTAVVNELLSKDG 222
           +                                   A   +     G   V   +     
Sbjct: 188 ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVN 247

Query: 223 GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 282
            L E       +A   +   G  D+V        +            L         + +
Sbjct: 248 RLKE-----MHDAFKLSNPDGVFDLVT-------KSECLQGFYMLRNLIRRNDEVLLDDI 295

Query: 283 KLLLEADAAIVMLPD----KFGNTALHVATRKKRTEIVTELLSLPDTNVNALT 331
           + LL       + P        N  L +A R         LLS+P   V ALT
Sbjct: 296 RFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS--VLALT 346

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 5e-29
 Identities = 73/304 (24%), Positives = 114/304 (37%), Gaps = 46/304 (15%)

Query: 74  NDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNEV-NELGET 131
           ++  L  A Q  D+  V+Q+L  G +                       VN    E G T
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGAN-----------------------VNFQEEEGGWT 41

Query: 132 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS 191
            L  A      ++V  LL++        + ++G  P  +AA+ G   ++++ L       
Sbjct: 42  PLHNAVQMSREDIVELLLRHGADP--VLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-V 98

Query: 192 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGL---------LEISRSNGKNALHFAARQ 242
                   T  + AA  G    +  L  +   +          E  R  G  AL  AA +
Sbjct: 99  NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

Query: 243 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC----EVVKLLLEADAAIVMLPDK 298
           GHV+V+K LL +        D  G+ AL  A+          +  LLL+  A  V +  +
Sbjct: 159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGE 217

Query: 299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 358
            G T L +A  KK   +V  LL      +N    D KTAL +A       +  +I + L 
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA----VELKLKKIAELLC 273

Query: 359 RCGA 362
           + GA
Sbjct: 274 KRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 2e-25
 Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 22/249 (8%)

Query: 66  VKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGN-----------LSGAEFDTEV 114
           V         T LH A Q      V+ +L      ++             ++G+    ++
Sbjct: 31  VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL 90

Query: 115 AEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYS--------TKEGLTRKNRSGFD 166
              + + VNE +  G TA   AA  G ++ +  L K          TKE   R  + G  
Sbjct: 91  FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150

Query: 167 PLHIAAVQGHHAIVQVLLDH---DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 223
            L  AA +GH  ++++LLD    D +     G +     + ++       +  LL   G 
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 224 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 283
            + +    GK  L  A  + H+ +V+ LL ++      TD  G+TAL +AV+ +  ++ +
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

Query: 284 LLLEADAAI 292
           LL +  A+ 
Sbjct: 271 LLCKRGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 7e-10
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 228 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 286
           +     + L  A +   VD+V+ LL     +  + ++ G T LH AV+    ++V+LLL
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 4e-08
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 265 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 316
           +    L  AV+ +  ++V+ LLE  A +    ++ G T LH A +  R +IV
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.7 bits (242), Expect = 9e-24
 Identities = 47/211 (22%), Positives = 80/211 (37%), Gaps = 6/211 (2%)

Query: 133 LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ 192
           +   A  G +E + E +  + K   TR ++     LH A   GH  IV+        +  
Sbjct: 7   VCNLAYSGKLEELKESIL-ADKSLATRTDQDSRTALHWACSAGHTEIVEF--LLQLGVPV 63

Query: 193 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 252
                     +  A       + + L   G  +     NG   LH+AA +   ++   LL
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 253 SKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR 312
                   + D    TA+H     +    +  +L    A   + D  GNT LH+A  ++R
Sbjct: 124 EGGANPDAK-DHYEATAMHR-AAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 181

Query: 313 TEIVTELLSLPDTNVNALTRDHKTALDIAEG 343
            E    L+S    ++    ++ KT L +A+G
Sbjct: 182 VEEAKLLVSQ-GASIYIENKEEKTPLQVAKG 211

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 1e-22
 Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 28/247 (11%)

Query: 74  NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETAL 133
           ++  +   A  G L  +K+ +                         S+    ++   TAL
Sbjct: 3   SNLMVCNLAYSGKLEELKESI---------------------LADKSLATRTDQDSRTAL 41

Query: 134 FTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT 193
             A   GH E+V           +  K+ +G+ PLHIAA  G   IV+ LL     ++  
Sbjct: 42  HWACSAGHTEIVEF--LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 99

Query: 194 TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 253
              +  TPL  AA++    +   LL   G   +        A+H AA +G++ ++  LL 
Sbjct: 100 NQ-NGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIHILLY 157

Query: 254 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT 313
                  + D +G T LH+A   +  E  KLL+   A+ + + +K   T L VA +    
Sbjct: 158 YKASTNIQ-DTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA-KGGLG 214

Query: 314 EIVTELL 320
            I+  ++
Sbjct: 215 LILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 9e-15
 Identities = 44/194 (22%), Positives = 69/194 (35%), Gaps = 16/194 (8%)

Query: 70  TGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRS---------- 119
           T + + T LH A   G    V+ +L         + +G       A              
Sbjct: 33  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 92

Query: 120 -SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA 178
            + VN VN+ G T L  AA K   E+   LL+         K+      +H AA +G+  
Sbjct: 93  GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN--PDAKDHYEATAMHRAAAKGNLK 150

Query: 179 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 238
           ++ +LL +  S          TPL  A           L+S+ G  + I     K  L  
Sbjct: 151 MIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKTPLQV 208

Query: 239 AARQGHVDVVKALL 252
           A   G   ++K ++
Sbjct: 209 AKG-GLGLILKRMV 221

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.3 bits (225), Expect = 3e-21
 Identities = 55/247 (22%), Positives = 82/247 (33%), Gaps = 47/247 (19%)

Query: 121 VVNEVNELGETALFTAADKGHIEVVNELLKY-STKEGLTRKNRSGFDPLHIAAVQGH--- 176
           V   V E G+TAL  A    H   ++ LL + +  E L  +N  G   LH+AA+ G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 177 ------------------------------HAIVQVLLDHDPSLSQT------------T 194
                                         H    VLL   PS  +             T
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 195 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 254
             ++  P    +                  LE    +G   LH A      ++V+ L   
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 255 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 314
              L +     G+T LH+AV+ Q+  V++LLL+A A         G T L  A  +    
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPI 239

Query: 315 IVTELLS 321
           +   L +
Sbjct: 240 LARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.1 bits (196), Expect = 2e-17
 Identities = 49/264 (18%), Positives = 73/264 (27%), Gaps = 70/264 (26%)

Query: 75  DTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETAL 133
           DT LHLA        +  +L +                          ++  N+LG+TAL
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGH--------------------EYLDLQNDLGQTAL 49

Query: 134 FTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT 193
             AA  G    V +   Y+   G+    R G   LH+A     H    VLL   PS  + 
Sbjct: 50  HLAAILGEASTVEK--LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107

Query: 194 ------------TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG--------- 232
                       T  ++  P    +                  LE    +G         
Sbjct: 108 ASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI 167

Query: 233 -------------------------KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ 267
                                    +  LH A       V++ LL        R    G+
Sbjct: 168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR-MYGGR 226

Query: 268 TALHMAVKGQSCEVVKLLLEADAA 291
           T L  A+   +  + +LL    A 
Sbjct: 227 TPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 37/219 (16%), Positives = 63/219 (28%), Gaps = 24/219 (10%)

Query: 59  QAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQ------------------ 100
                     +      T LHLAA  G+   V+++                         
Sbjct: 30  GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVR 89

Query: 101 ---MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEG- 156
                  L             + +    +   +T+   AA        NE          
Sbjct: 90  AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149

Query: 157 -LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVN 215
            L  +N  G  PLH+A +     +V++L D    L++       TPL  A      +V+ 
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209

Query: 216 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 254
            LL   G         G+  L  A  + +  + + L + 
Sbjct: 210 LLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 6/34 (17%), Positives = 11/34 (32%)

Query: 122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKE 155
                  G T L +A  + +  +   L  +   E
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 91.7 bits (226), Expect = 3e-21
 Identities = 46/270 (17%), Positives = 91/270 (33%), Gaps = 30/270 (11%)

Query: 63  KKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVV 122
           ++ V  +  RHN T LH  A        + ++     + +    GA+            V
Sbjct: 22  RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA--GAD------------V 67

Query: 123 NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQV 182
           N ++    T L  A       +V  L+K      +  K+         A       ++  
Sbjct: 68  NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA--NRDFGMMVY 125

Query: 183 LLDHDPSLSQTTGPSNATPLVS--AATRGHTAV----------VNELLSKDGGLLEISRS 230
           +L+                      A                   ++        +  + 
Sbjct: 126 MLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY 185

Query: 231 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 290
            G+ ALH+AA+  ++ +VK L+ +      + D+ G+T + +A +    EVV  L++  A
Sbjct: 186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 245

Query: 291 AIVMLPDKFGNTALHVATRKKRTEIVTELL 320
           ++    D   +TA  +A       IV ++ 
Sbjct: 246 SV-EAVDATDHTARQLAQANNHHNIV-DIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 81.3 bits (199), Expect = 1e-17
 Identities = 50/304 (16%), Positives = 93/304 (30%), Gaps = 46/304 (15%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           ++ + L  +     A+ + +                       R SV         T L 
Sbjct: 1   ESPIKLHTEAAGSYAITEPI----------------------TRESVNIIDPRHNRTVLH 38

Query: 135 TAADKGHIEVVNELLKYSTKEGLTR------KNRSGFDPLHIAAVQGHHAIVQVLLDHDP 188
             A     E   +L+ +  KE +         +     PL +A +     +V  L+    
Sbjct: 39  WIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA 98

Query: 189 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF--AARQGHVD 246
             +       +    +AA      ++  +L+      +I   +          A     D
Sbjct: 99  DPTIYNKSERSALHQAAA-NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD 157

Query: 247 V----------VKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLP 296
                         +             KG+TALH A +  +  +VK L+    +     
Sbjct: 158 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ 217

Query: 297 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDC 356
           D+ G T + +A ++ R E+V  L+     +V A+     TA  +A     +     I D 
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLA----QANNHHNIVDI 272

Query: 357 LARC 360
             RC
Sbjct: 273 FDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 24/81 (29%)

Query: 72  RHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGE 130
               T + LAAQ G +  V  ++  G                         V  V+    
Sbjct: 219 EDGKTPIMLAAQEGRIEVVMYLIQQGAS-----------------------VEAVDATDH 255

Query: 131 TALFTAADKGHIEVVNELLKY 151
           TA   A    H  +V+   + 
Sbjct: 256 TARQLAQANNHHNIVDIFDRC 276

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.0 bits (216), Expect = 3e-20
 Identities = 45/248 (18%), Positives = 79/248 (31%), Gaps = 25/248 (10%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           +  LH A    +   V+++L                       + S++ + ++ G   L 
Sbjct: 1   NYPLHQACMENEFFKVQELL---------------------HSKPSLLLQKDQDGRIPLH 39

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 194
            +      E+ + LL       L              A    +  V   L   P      
Sbjct: 40  WSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN 99

Query: 195 GPSNATPLVSAATRGHTAV-VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 253
             +N          G     V++ L ++G  + I     +  LH AA  G + +++ L  
Sbjct: 100 KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 159

Query: 254 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT 313
                    DK+G T L  A+     +   LL+E   A   L D  G  A  VA  +   
Sbjct: 160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE--- 216

Query: 314 EIVTELLS 321
           ++    L+
Sbjct: 217 QVKKFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.2 bits (214), Expect = 4e-20
 Identities = 44/234 (18%), Positives = 72/234 (30%), Gaps = 10/234 (4%)

Query: 131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 190
             L  A  +     V ELL  S    L +K++ G  PLH +     H I   LL    ++
Sbjct: 2   YPLHQACMENEFFKVQELLH-SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 191 SQTTGPSNATPLVSAATRGHTAVVNELLS--KDGGLLEISRSNGKNALHFAARQGHVDVV 248
           +    P ++             +        +         +N        A       V
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 249 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 308
              L ++    R  DK  Q  LH A    S ++++LL     + V   DK G T L  A 
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 309 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 362
            +   +    L+       + +      A D+A          ++K        
Sbjct: 181 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA-------LNEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 301 NTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 341
           N  LH A  +     V ELL    + +    +D +  L  +
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS 41

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.1 bits (209), Expect = 9e-19
 Identities = 38/315 (12%), Positives = 86/315 (27%), Gaps = 41/315 (13%)

Query: 11  RDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAP-ALVLSNSGKRIDQAGKKKYVKQV 69
            DL    +S  L       S +                L+     +           +  
Sbjct: 8   HDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNS 67

Query: 70  TGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELG 129
            G  ++ +    +    L  V                  + +  +          V+E G
Sbjct: 68  EGGSSNQQQQHVSFDSLLQEVNDAF-----------PNTQLNLNIP---------VDEHG 107

Query: 130 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS 189
            T L       ++E+V  L+K+ +       +  G   L  A    ++            
Sbjct: 108 NTPLHWLTSIANLELVKHLVKHGSN--RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 165

Query: 190 LSQTTGPSNA---TPLVSAATRGH------------TAVVNELLSKDGGLLEISRSNGKN 234
           L       ++   T L                      ++  ++ K    ++   +  ++
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 235 ALHFAARQGHVDVVKALLSKD--PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 292
             +    +    +++ L  K     +    D  G T L++A +  +  +V  LL+  A  
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD- 284

Query: 293 VMLPDKFGNTALHVA 307
             + +K G   +   
Sbjct: 285 PFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.6 bits (135), Expect = 2e-09
 Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 4/145 (2%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
             L          +   L +          S+ +   H +      +V  A  +    L 
Sbjct: 41  AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 100

Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR---TEIV 316
              D+ G T LH      + E+VK L++  +   +  D  G + L  A +      +   
Sbjct: 101 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTF 159

Query: 317 TELLSLPDTNVNALTRDHKTALDIA 341
             LL      +      ++T L   
Sbjct: 160 EALLDYLYPCLILEDSMNRTILHHI 184

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.2 bits (134), Expect = 3e-09
 Identities = 25/225 (11%), Positives = 57/225 (25%), Gaps = 50/225 (22%)

Query: 167 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 226
            L          +   L +   + +   G SN      +       V +   +    L  
Sbjct: 42  FLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI 101

Query: 227 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR------------------------- 261
               +G   LH+     ++++VK L+                                  
Sbjct: 102 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 161

Query: 262 -----------TDKKGQTALHMAVKGQSCE------------VVKLLLEADAAIVMLPDK 298
                       D   +T LH  +                  ++  +++     +     
Sbjct: 162 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 221

Query: 299 FGNTALHVATRKKRTEIVTELLS--LPDTNVNALTRDHKTALDIA 341
              +  +    +++  I+  L    +    +NA   +  T L+IA
Sbjct: 222 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 266

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.7 bits (130), Expect = 9e-09
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 1/147 (0%)

Query: 229 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 288
           +   +  L         ++  +L +             Q   H++      EV       
Sbjct: 36  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 95

Query: 289 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSE 348
              + +  D+ GNT LH  T     E+V  L+    +N        ++ L  A    ++ 
Sbjct: 96  QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNY 154

Query: 349 EASEIKDCLARCGAVRANELNQPRDEL 375
           ++   +  L         E +  R  L
Sbjct: 155 DSGTFEALLDYLYPCLILEDSMNRTIL 181

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 73  HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETA 132
            N T LH       +             ++G +          + ++  +       E+ 
Sbjct: 176 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWI---------VKKQNRPIQSGTNEKESK 226

Query: 133 LFTAADKGHIEVVNEL-LKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPS 189
                 +    ++  L LK+     L  ++ +G   L+IAA  G+ +IV  LLD+  DP 
Sbjct: 227 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 286

Query: 190 LSQTTGPSNATPLVSAA 206
           ++  +G     P+   A
Sbjct: 287 IANKSG---LRPVDFGA 300

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 2e-17
 Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 40/226 (17%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQV---- 182
           G+T L  A  +G++  V+ L+    + G  L   N     PLH+A +    ++V++    
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 183 --------------------------------LLDHDPSLSQTTGPSNATPLVSAATRGH 210
                                                    +       T L  A     
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 211 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTAL 270
              V  LL +   +  +   +G++ L  A     + +V+ LL +           G +AL
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ-LLLQHGANVNAQMYSGSSAL 181

Query: 271 HMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 316
           H A       +V+ L+ + A    L +   +T L VA  ++  +I+
Sbjct: 182 HSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (183), Expect = 6e-16
 Identities = 48/246 (19%), Positives = 87/246 (35%), Gaps = 59/246 (23%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETAL- 133
           DT LH+A  +G+L AV +++            G E            ++  N L +T L 
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQ------GGRE------------LDIYNNLRQTPLH 45

Query: 134 --------------------------------FTAADKGHIEVVNELLKY--STKEGLTR 159
                                             A +      +  LL         L  
Sbjct: 46  LAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA 105

Query: 160 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 219
           +N  G   LH+A        VQ+LL+    +      S  +PL+ A    ++  + +LL 
Sbjct: 106 RNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV-ENNSLSMVQLLL 164

Query: 220 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQ 277
           + G  +     +G +ALH A+ +G + +V+ L+    D  L    +    T L +A   +
Sbjct: 165 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL---KNCHNDTPLMVARSRR 221

Query: 278 SCEVVK 283
             ++++
Sbjct: 222 VIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 7e-09
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 231 NGKNALHFAARQGHVDVVKALLSKDPQLAR---RTDKKGQTALHMAVKGQSC 279
           +G   LH A  QG++  V  L++   Q  R     +   QT LH+AV     
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP 53

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 27/92 (29%)

Query: 55  KRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTE 113
           + + Q G     +  +G      LH A+ RG L  V+ ++  G D               
Sbjct: 161 QLLLQHGANVNAQMYSGSSA---LHSASGRGLLPLVRTLVRSGAD--------------- 202

Query: 114 VAEIRSSVVNEVNELGETALFTAADKGHIEVV 145
                    +  N   +T L  A  +  I+++
Sbjct: 203 --------SSLKNCHNDTPLMVARSRRVIDIL 226

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 80.9 bits (198), Expect = 2e-17
 Identities = 50/240 (20%), Positives = 82/240 (34%), Gaps = 32/240 (13%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 188
                  A   G  E V  LL+      +   N  G   LH A +  +  +V+ L+++  
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 189 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 248
             +     +     + AA       + E L   G  +    S G   L  A  +   +++
Sbjct: 98  --NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

Query: 249 K--------------------------ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 282
           +                            L+       R  K G TALH+A      EV+
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215

Query: 283 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 342
           K LL      V + D  G T LH A    + E    L+     ++ A+ +  +TA D+A+
Sbjct: 216 K-LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 78.2 bits (191), Expect = 2e-16
 Identities = 49/296 (16%), Positives = 84/296 (28%), Gaps = 54/296 (18%)

Query: 51  SNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAE 109
             S   ++    K+   +V    +      A   GD   V ++L  G D           
Sbjct: 18  IGSETDLEPPVVKRKKTKVK-FDDGAVFLAACSSGDTEEVLRLLERGAD----------- 65

Query: 110 FDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLH 169
                       +N  N  G TAL  A    ++++V  L++                   
Sbjct: 66  ------------INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAA 113

Query: 170 IAAV-----------------------QGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA 206
            +                                +  ++            +        
Sbjct: 114 ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEE 173

Query: 207 TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG 266
            R       + L+           +G  ALH AA +G+ +V+K L+     +    D  G
Sbjct: 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDG 232

Query: 267 QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 322
            T LH A      E  ++L+E    +    +K G TA  VA      +I+  L  L
Sbjct: 233 WTPLHAAAHWGKEEACRILVENLCDM-EAVNKVGQTAFDVADE----DILGYLEEL 283

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 239 AARQGHVDVVKALLSKDPQLARRTDKK--------GQTALHMAVKGQSCEVVKLLLEADA 290
            A+Q   + +K  +  +  L     K+               A      E V  LLE  A
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64

Query: 291 AIVMLPDKFGNTALHVATRKKRTEI 315
             +   +  G TALH A      ++
Sbjct: 65  D-INYANVDGLTALHQACIDDNVDM 88

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.8 bits (192), Expect = 3e-17
 Identities = 43/213 (20%), Positives = 82/213 (38%), Gaps = 7/213 (3%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAA----VQGHHAIVQV 182
           G++ L  A       +  E+++    +   L  +N     PLH+A      +   A++  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 183 LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 242
             D +    +   P +                +        +L+ +  NG   LH A+  
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 243 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT 302
           G++ +V+ L+S    +  +    G+TALH+AV  Q+ ++V LLL+  A +       G +
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYS 180

Query: 303 ALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 335
              +   +  T I  +L  L   N+  L     
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQMLPESED 213

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (172), Expect = 1e-14
 Identities = 45/228 (19%), Positives = 73/228 (32%), Gaps = 23/228 (10%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
           D+ LHLA    +     +++  +          A             +N  N L +T L 
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGD------LAF------------LNFQNNLQQTPLH 44

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT- 193
            A      E+   LL       L     +    L           V       P L    
Sbjct: 45  LAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 104

Query: 194 --TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 251
             T  +  T L  A+  G+  +V  L+S    +      NG+ ALH A    + D+V  L
Sbjct: 105 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 164

Query: 252 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA-AIVMLPDK 298
           L     + R    +G +   +     S  + + L +     + MLP+ 
Sbjct: 165 LKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 8e-09
 Identities = 39/219 (17%), Positives = 72/219 (32%), Gaps = 14/219 (6%)

Query: 164 GFDPLHIAAVQGHHA----IVQVLLDHDPSLSQTTGPSNATPLVSAA----TRGHTAVVN 215
           G   LH+A +    A    +++ +      L+        TPL  A          A++ 
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALLG 60

Query: 216 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 275
                +      +                V            + + T+  G T LH+A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 276 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 335
                +V+LL+   A +       G TALH+A   +  ++V+ LL     +VN +T    
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGY 179

Query: 336 TALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDE 374
           +   +         ++ I+  L +        L +  DE
Sbjct: 180 SPYQLT----WGRPSTRIQQQLGQLTLENLQMLPESEDE 214

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 231 NGKNALHFAARQGHVDVVKALLSK---DPQLARRTDKKGQTALHMAVKGQSC 279
           +G + LH A       +   ++ +   D       +   QT LH+AV     
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQP 52

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 71.0 bits (172), Expect = 1e-14
 Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 7/200 (3%)

Query: 122 VNE-VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIV 180
           +N  +++ GET+L  AA     +    LL                    +AA       +
Sbjct: 15  LNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQI 74

Query: 181 QVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 240
            +        ++    +        A R     + E L      +  + ++GK ALH+AA
Sbjct: 75  LLRNRATNLNARMHDGTTPLI---LAARLAIEGMVEDLITADADINAADNSGKTALHWAA 131

Query: 241 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG 300
              + + V  L           D K +T L +A +  S E  K LL+  A    + D   
Sbjct: 132 AVNNTEAVNIL-LMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR-EITDHMD 189

Query: 301 NTALHVATRKKRTEIVTELL 320
                VA+ +   +IV  LL
Sbjct: 190 RLPRDVASERLHHDIV-RLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.9 bits (138), Expect = 4e-10
 Identities = 42/197 (21%), Positives = 65/197 (32%), Gaps = 14/197 (7%)

Query: 66  VKQVTGRHNDTELHLAAQRGDLGAVK-----------QILYGIDSQMVGNLSGAEFDTEV 114
           +     +  +T LHLAA+     A K           Q   G         + A    ++
Sbjct: 15  LNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQI 74

Query: 115 AEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ 174
                +          T     A +  IE + E L  +  + +   + SG   LH AA  
Sbjct: 75  LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAAAV 133

Query: 175 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN 234
            +   V +LL H  +          TPL  AA  G       LL       EI+    + 
Sbjct: 134 NNTEAVNILLMHHANRDAQDDKDE-TPLFLAAREGSYEASKALLDN-FANREITDHMDRL 191

Query: 235 ALHFAARQGHVDVVKAL 251
               A+ + H D+V+ L
Sbjct: 192 PRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 49/202 (24%), Positives = 76/202 (37%), Gaps = 11/202 (5%)

Query: 143 EVVNELLKYSTKEGL---TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA 199
           +V+++LL      G       +++G   LH+AA        +  L    + + +   +  
Sbjct: 3   QVISDLLAQ----GAELNATMDKTGETSLHLAARFARADAAK-RLLDAGADANSQDNTGR 57

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
           TPL +A       V   LL      L     +G   L  AAR     +V+ L++ D  + 
Sbjct: 58  TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN 117

Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 319
              D  G+TALH A    + E V +LL   A      D    T L +A R+   E    L
Sbjct: 118 AA-DNSGKTALHWAAAVNNTEAVNILLMHHANRDA-QDDKDETPLFLAAREGSYEASKAL 175

Query: 320 LSLPDTNVNALTRDHKTALDIA 341
           L     N        +   D+A
Sbjct: 176 LDN-FANREITDHMDRLPRDVA 196

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 278 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 319
           + +V+  LL   A +    DK G T+LH+A R  R +    L
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (130), Expect = 1e-09
 Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 7/159 (4%)

Query: 127 ELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 186
           +LG   L  AA  G  + V  L+             S               ++      
Sbjct: 1   DLG-KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 187 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 246
             + ++                   A + E+L K G  +         ALH+A    H +
Sbjct: 60  RDARTKVDRTPLHMA-----ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114

Query: 247 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 285
           VV+ L+     +  +  K  +TA  +++   + ++ ++L
Sbjct: 115 VVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.4 bits (121), Expect = 2e-08
 Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 6/154 (3%)

Query: 167 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 226
            L  AA  G    V++L+ +    +     ++   L +      T  V            
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS----R 60

Query: 227 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 286
            +R+         A       +  +L K        D    TALH A +    EVV+LL 
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL- 119

Query: 287 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 320
               A V    KF  TA  ++      ++  E+L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLA-EIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 5/142 (3%)

Query: 200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 259
             L+ AA  G    V  L++        +      +    A Q        +L +     
Sbjct: 4   KKLLEAARAGQDDEVRILMANGA---PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 260 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 319
               K  +T LHMA       +V++LL+  A +    D    TALH AT     E+V EL
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVV-EL 118

Query: 320 LSLPDTNVNALTRDHKTALDIA 341
           L     +V+  ++  KTA DI+
Sbjct: 119 LIKYGADVHTQSKFCKTAFDIS 140

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 37/176 (21%), Positives = 56/176 (31%), Gaps = 27/176 (15%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFT 135
            +L  AA+ G    V+ ++           +GA F T             + LG + L  
Sbjct: 4   KKLLEAARAGQDDEVRILMA----------NGAPFTT-------------DWLGTSPLHL 40

Query: 136 AADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG 195
           AA  GH      LL+         K       +  +    +   V +    D +      
Sbjct: 41  AAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK 100

Query: 196 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 251
               T L  A    H  VV ELL K G  +       K A   +   G+ D+ + L
Sbjct: 101 M---TALHWATEHNHQEVV-ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 7/29 (24%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 122 VNEVNELGETALFTAADKGHIEVVNELLK 150
           V+  ++  +TA   + D G+ ++  E+L+
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLA-EILQ 153

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 8e-09
 Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 4/127 (3%)

Query: 127 ELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 186
           E     L TAA +G +E V  LL+     G      + +    I  +    A V  LL  
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEA----GANPNAPNSYGRRPIQVMMMGSARVAELLLL 56

Query: 187 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 246
             +      P+  T  V  A R        +L + G  L++  + G+  +  A   GH D
Sbjct: 57  HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD 116

Query: 247 VVKALLS 253
           V + L +
Sbjct: 117 VARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 6e-07
 Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 3/123 (2%)

Query: 166 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 225
           D L  AA +G    V+ LL+   + +           V        A +  L   +    
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 226 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 285
           + +                  VV     +        D  G+  + +A +    +V + L
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVL---HRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

Query: 286 LEA 288
             A
Sbjct: 122 RAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-06
 Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 31/121 (25%)

Query: 232 GKNALHFAARQGHVDVVKALLS-------------------------------KDPQLAR 260
             + L  AA +G V+ V+ALL                                       
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 261 RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 320
             D    T        +      ++L    A + + D +G   + +A      ++   L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 321 S 321
           +
Sbjct: 123 A 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 2e-05
 Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 9/121 (7%)

Query: 74  NDTELHLAAQRGDLGAVKQIL---------YGIDSQMVGNLSGAEFDTEVAEIRSSVVNE 124
           +   L  AA RG +  V+ +L              + +  +           +       
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 125 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 184
             +                +   ++ +     L  ++  G  P+ +A   GH  + + L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 185 D 185
            
Sbjct: 123 A 123

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 3e-08
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 6/159 (3%)

Query: 129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 188
               L  AA +G ++ V  LL           NR G   L +         +++L     
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLH-RELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 189 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 248
              Q T  ++     +      T  V     + G  + +    G   +H A ++GH  VV
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLV---EHGADVNVPDGTGALPIHLAVQEGHTAVV 117

Query: 249 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 287
             L ++     R  D +G T L +A++  + ++V +L  
Sbjct: 118 SFLAAESDLHRR--DARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 6e-08
 Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 6/160 (3%)

Query: 162 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 221
           R+G D L  AA +G    V+ LL  +            T L           +  L    
Sbjct: 1   RAG-DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

Query: 222 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 281
                  +     +    A +        +L +        D  G   +H+AV+     V
Sbjct: 60  S---PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 116

Query: 282 VKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 321
           V  L     + +   D  G T L +A ++   ++V  L  
Sbjct: 117 VSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 157 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 186
           L R++  G  PL +A  +G   +V +L  H
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 28/182 (15%)

Query: 72  RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGET 131
           R  D  L  AA RGD+  V+++L         +                  + +N  G+T
Sbjct: 1   RAGDR-LSGAAARGDVQEVRRLL---------HRELVH------------PDALNRFGKT 38

Query: 132 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS 191
           AL           +  L + ++         S               ++        +  
Sbjct: 39  ALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV----EHGADV 94

Query: 192 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 251
                + A P+  A   GHTAVV+ L ++    L    + G   L  A ++G  D+V  L
Sbjct: 95  NVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 252 LS 253
             
Sbjct: 153 QG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 33/141 (23%)

Query: 232 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA- 290
             + L  AA +G V  V+ LL ++       ++ G+TAL + + G +   ++LL +  + 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 291 ------------------------------AIVMLPDKFGNTALHVATRKKRTEIVTELL 320
                                         A V +PD  G   +H+A ++  T +V+ L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 321 SLPDTNVNALTRDHKTALDIA 341
           +  D  ++       T L++A
Sbjct: 122 AESD--LHRRDARGLTPLELA 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (120), Expect = 3e-08
 Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 40/128 (31%)

Query: 234 NALHFAARQGHVDVVKALLSK-----DPQLARRTDKKGQTALHMAVK---GQSCEVVKLL 285
           ++L  A +   +  +    +      +        +  +TALH+AV+     S  +V  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 286 LEADA--------------------------------AIVMLPDKFGNTALHVATRKKRT 313
           ++                                   A + + ++ G T L +A R K  
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 127

Query: 314 EIVTELLS 321
                L  
Sbjct: 128 HCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 19/145 (13%), Positives = 41/145 (28%), Gaps = 10/145 (6%)

Query: 161 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA-----TPL---VSAATRGHTA 212
             +    L  A        +         L++    +N      T L   V +  R    
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 213 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM 272
           +V+ L+          ++   +                LL +        ++ G+T L +
Sbjct: 63  IVDFLVQN--SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 273 AVKGQSCEVVKLLLEADAAIVMLPD 297
           A + +     +LL +A +       
Sbjct: 121 AKRLKHEHCEELLTQALSGRFNSHV 145

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 4e-08
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 190
             L +AA +G +E +  LL+ +    +  +N  G   L +  +       ++      + 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMKLGNPEIARRL--LLRGAN 58

Query: 191 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKA 250
                 +    +  AA  G    +  LL     +            H AA++GH+ VV+ 
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL-HLAAKEGHLRVVEF 117

Query: 251 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 288
           L+          + KG TA  +A      EVV L+   
Sbjct: 118 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 9e-08
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 166 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 225
           + L  AA +G    +  LL ++ +++   G       V        A    L   +    
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANP--- 59

Query: 226 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 285
           ++    G   +H AAR G +D ++ LL     +    ++        A +G    V  L+
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 119

Query: 286 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 321
            +  A+ V   +  G+TA  +A    R E+V+ + +
Sbjct: 120 -KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 41/180 (22%), Positives = 57/180 (31%), Gaps = 28/180 (15%)

Query: 76  TELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALF 134
            EL  AA RGDL  +  +L   ++                       VN  N  G TAL 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVN-----------------------VNAQNGFGRTALQ 39

Query: 135 TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 194
                                    K+R+GF  +H AA  G    +Q LL+    ++   
Sbjct: 40  VMKLGNPEIARR---LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED 96

Query: 195 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 254
              N      AA  GH  VV  L+      +      G  A   A   G  +VV  + + 
Sbjct: 97  NEGNLPL-HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 6e-08
 Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 5/130 (3%)

Query: 131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 190
             L  ++ +G  ++V  ++    +                 AV   H  +   L      
Sbjct: 3   ALLLDSSLEGEFDLVQRIIY---EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 59

Query: 191 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA--LHFAARQGHVDVV 248
                    TPL  AA+  +  V   L+     +  ++ S+ + A        +G+    
Sbjct: 60  VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 119

Query: 249 KALLSKDPQL 258
           + L     ++
Sbjct: 120 QFLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 4e-07
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 4/128 (3%)

Query: 167 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 226
            L  ++++G   +VQ ++      S            +        V      + G  + 
Sbjct: 4   LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL--VQFGVNVN 61

Query: 227 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA--LHMAVKGQSCEVVKL 284
            + S+G   LH AA   +V V K L+     +   T    QTA      ++    +  + 
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 285 LLEADAAI 292
           L      +
Sbjct: 122 LYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 34/121 (28%)

Query: 236 LHFAARQGHVDVVKALLSK--------------------------------DPQLARRTD 263
           L  ++ +G  D+V+ ++ +                                        D
Sbjct: 5   LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 64

Query: 264 KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA--LHVATRKKRTEIVTELLS 321
             G T LH A    + +V K L+E+ AA+  +      TA        +  T+    L  
Sbjct: 65  SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 124

Query: 322 L 322
           +
Sbjct: 125 V 125

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.5 bits (103), Expect = 2e-06
 Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 7/121 (5%)

Query: 167 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 226
               A   G    V+  +     +++T          +A       +        G  + 
Sbjct: 5   EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL--LLKGADIN 62

Query: 227 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 286
               +    L  A  +GHV  VK LLSK      +    G TAL         + +K LL
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTALEAT----DNQAIKALL 117

Query: 287 E 287
           +
Sbjct: 118 Q 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.2 bits (97), Expect = 2e-05
 Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 8/125 (6%)

Query: 128 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD 187
           + +     A   G ++ V + +        T +             Q       +L   D
Sbjct: 1   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 60

Query: 188 PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV 247
            +       +     V            +LL   G    +   +G  AL     Q     
Sbjct: 61  INAPDKHHITPLLSAVYEGHVSC----VKLLLSKGADKTVKGPDGLTALEATDNQ----A 112

Query: 248 VKALL 252
           +KALL
Sbjct: 113 IKALL 117

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 35/118 (29%)

Query: 234 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL--------- 284
               +A + G +D VK  ++K   + R  +   +   + A  GQ   +  L         
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 285 ----------------------LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 320
                                 LL +  A   +    G TAL         + +  LL
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT----DNQAIKALL 117

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 13/118 (11%)

Query: 75  DTELHLAAQRGDLGAVKQIL-----------YGIDSQMVGNLSGAEFDTEVAEIRSSVVN 123
           D E   A + GDL  VK  +            G          G     E   ++ + +N
Sbjct: 3   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62

Query: 124 EVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 181
             ++   T L +A  +GH+  V      S     T K   G   L     Q   A++Q
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKL--LLSKGADKTVKGPDGLTALEATDNQAIKALLQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	591
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.79

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-36  Score=310.45  Aligned_cols=288  Identities=29%  Similarity=0.334  Sum_probs=232.5

Q ss_pred             CcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 007741           75 DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTK  154 (591)
Q Consensus        75 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~  154 (591)
                      .||||.||..|+.++|++|++.                      ++.+|..|..|.||||+|+..|+.++|++|+++|++
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~----------------------g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad   58 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQR----------------------GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK   58 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT----------------------TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             CChHHHHHHCcCHHHHHHHHHC----------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC
Confidence            3999999999999999999986                      677899999999999999999999999999998865


Q ss_pred             ccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCc--------------------------------ccCCCCCCCHH
Q 007741          155 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS--------------------------------QTTGPSNATPL  202 (591)
Q Consensus       155 ~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~--------------------------------~~~~~~g~tpL  202 (591)
                        ++.++.+|.||||+|+..|+.+++++|+..+++..                                ...+..+.+++
T Consensus        59 --i~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  136 (408)
T d1n11a_          59 --VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPL  136 (408)
T ss_dssp             --SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHH
T ss_pred             --CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHH
Confidence              67788999999999999999999999987654321                                22345677888


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccc-----------------------
Q 007741          203 VSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA-----------------------  259 (591)
Q Consensus       203 ~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~-----------------------  259 (591)
                      +.|+..++.+++++|+++ +..++..+.+|.+|||+|+..|+.+++++|+++|+++.                       
T Consensus       137 ~~a~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~  215 (408)
T d1n11a_         137 HVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR  215 (408)
T ss_dssp             HHHHHTTCHHHHHHHHHT-TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhh
Confidence            888888888888888877 44556667778888888888888888888887665431                       


Q ss_pred             ------------------------------------------cccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCC
Q 007741          260 ------------------------------------------RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD  297 (591)
Q Consensus       260 ------------------------------------------~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d  297 (591)
                                                                +..|..|.|||+.|++.++.+++++|+++|++ ++..+
T Consensus       216 ~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~  294 (408)
T d1n11a_         216 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATT  294 (408)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCC
T ss_pred             hhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc-ccccc
Confidence                                                      11244555666666667777888888888777 67777


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccccccCCchHHhhh
Q 007741          298 KFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRK  377 (591)
Q Consensus       298 ~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~  377 (591)
                      ..+.||||.|+..++.++++++++ .|+++|.+|.+|+||||+|++.+    +.+++++|+++|++.....+.+.+.+..
T Consensus       295 ~~~~t~L~~~~~~~~~~~~~~ll~-~g~~in~~d~~G~T~Lh~A~~~g----~~~iv~~Ll~~GAd~n~~d~~G~t~L~~  369 (408)
T d1n11a_         295 RMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQG----HTDIVTLLLKNGASPNEVSSDGTTPLAI  369 (408)
T ss_dssp             SSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT----CHHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred             ccccccchhhcccCcceeeeeecc-ccccccccCCCCCCHHHHHHHcC----CHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            788888888888888888888888 48999999999999999999998    8999999999999987766667777777


Q ss_pred             hhhhhhhhhhhHHHHh
Q 007741          378 TVTQIKKDVHTQLEQT  393 (591)
Q Consensus       378 ~~~~~~~~~~~~l~~~  393 (591)
                      +......++.+.|+..
T Consensus       370 A~~~~~~~iv~~L~~~  385 (408)
T d1n11a_         370 AKRLGYISVTDVLKVV  385 (408)
T ss_dssp             HHHTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHH
Confidence            7766666666666544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-35  Score=305.22  Aligned_cols=283  Identities=29%  Similarity=0.384  Sum_probs=200.4

Q ss_pred             hhccCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcc--------hhHHHHh---------------------
Q 007741           67 KQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEF--------DTEVAEI---------------------  117 (591)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~--------~~~~~~~---------------------  117 (591)
                      ....|.+|.||||+|++.|+.+++++||+........+..+...        ..++...                     
T Consensus        26 in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  105 (408)
T d1n11a_          26 PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI  105 (408)
T ss_dssp             SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhh
Confidence            44568899999999999999999999998622111110000000        0000000                     


Q ss_pred             ---------------hcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHH
Q 007741          118 ---------------RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQV  182 (591)
Q Consensus       118 ---------------~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~  182 (591)
                                     .+...+..+..+.++|+.|+..++.+++++|++++..  ++..+..|.+|||.|+..|+.+++++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~--~~~~~~~~~~~L~~A~~~~~~~~~~~  183 (408)
T d1n11a_         106 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH--PNAAGKNGLTPLHVAVHHNNLDIVKL  183 (408)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCSSCCCHHHHHHHTTCHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC--CCcCCCcCchHHHHHHHcCCHHHHHH
Confidence                           0011222334444444444444445555555554332  34455566777777777777777777


Q ss_pred             HHhCCCCCcc--------------------------------cCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCC
Q 007741          183 LLDHDPSLSQ--------------------------------TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS  230 (591)
Q Consensus       183 Ll~~~~~~~~--------------------------------~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~  230 (591)
                      |+++|+++..                                ..+..+.|||++|+..++.+++++++.. ....+..+.
T Consensus       184 Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~  262 (408)
T d1n11a_         184 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNK  262 (408)
T ss_dssp             HGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCT
T ss_pred             HHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhcc-ccccccccC
Confidence            7777665421                                1123344555555555556666555554 334455677


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc
Q 007741          231 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  310 (591)
Q Consensus       231 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~  310 (591)
                      .|.|||+.|+..++.+++++|++.|+++ +..+..+.||||.++..++.++++++++.|++ ++.+|.+|+||||+|++.
T Consensus       263 ~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~-in~~d~~G~T~Lh~A~~~  340 (408)
T d1n11a_         263 SGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQ  340 (408)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             CCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchhhcccCcceeeeeecccccc-ccccCCCCCCHHHHHHHc
Confidence            8899999999999999999999999988 66788999999999999999999999999998 899999999999999999


Q ss_pred             CcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHh
Q 007741          311 KRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR  359 (591)
Q Consensus       311 g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~  359 (591)
                      |+.++|++|++ .|+|++.+|++|+||||+|++.+    +.+++++|..
T Consensus       341 g~~~iv~~Ll~-~GAd~n~~d~~G~t~L~~A~~~~----~~~iv~~L~~  384 (408)
T d1n11a_         341 GHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLG----YISVTDVLKV  384 (408)
T ss_dssp             TCHHHHHHHHH-TTCCSCCCCSSSCCHHHHHHHTT----CHHHHHHHHH
T ss_pred             CCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcC----CHHHHHHHHH
Confidence            99999999999 49999999999999999999999    6777776643

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-35  Score=286.86  Aligned_cols=235  Identities=23%  Similarity=0.224  Sum_probs=188.1

Q ss_pred             ccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCcc-CccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCC
Q 007741          122 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT  200 (591)
Q Consensus       122 ~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~-~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t  200 (591)
                      .+..|++|.||||+||++|+.+++++|++++++.. ++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.|
T Consensus         2 ~~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~t   80 (255)
T d1oy3d_           2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT   80 (255)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred             CccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccch
Confidence            35678999999999999999999999999886543 6788899999999999999999999999999998 668889999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcceec---------CCCCCc---HHHHHHHcCCHHHHH-HHHhcCcccccccCCCCC
Q 007741          201 PLVSAATRGHTAVVNELLSKDGGLLEIS---------RSNGKN---ALHFAARQGHVDVVK-ALLSKDPQLARRTDKKGQ  267 (591)
Q Consensus       201 pL~~A~~~g~~~~v~~LL~~~~~~~~~~---------~~~g~t---pLh~A~~~g~~~~v~-~Ll~~~~~~~~~~d~~g~  267 (591)
                      |||+|+..++.+++++|++.........         +..+.+   ++............. .+...+.++ +.+|..|.
T Consensus        81 pL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-n~~d~~g~  159 (255)
T d1oy3d_          81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGH  159 (255)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGT-TCCCTTSC
T ss_pred             hhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccc-ccccccCc
Confidence            9999999999999999997643221100         001111   111111111111111 122223333 66799999


Q ss_pred             cHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCC
Q 007741          268 TALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS  347 (591)
Q Consensus       268 t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~  347 (591)
                      ||||+|+..++.+++++|++.+++.....+..|.||||+|++.|+.+++++|+++ |+|++.+|+.|+||||+|+..+  
T Consensus       160 TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~-gadin~~d~~g~t~L~~A~~~~--  236 (255)
T d1oy3d_         160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRP--  236 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHTSS--
T ss_pred             ccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCC--
Confidence            9999999999999999999999987777788999999999999999999999995 9999999999999999999999  


Q ss_pred             hhhHHHHHHHHhcCcc
Q 007741          348 EEASEIKDCLARCGAV  363 (591)
Q Consensus       348 ~~~~~i~~~L~~~ga~  363 (591)
                        +.+++++|+++||+
T Consensus       237 --~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         237 --NPILARLLRAHGAP  250 (255)
T ss_dssp             --CHHHHHHHHHTTCC
T ss_pred             --CHHHHHHHHHcCCC
Confidence              89999999999996

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=277.08  Aligned_cols=220  Identities=27%  Similarity=0.400  Sum_probs=162.3

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCC
Q 007741           74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYST  153 (591)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~  153 (591)
                      +++.|+.+|+.|+.+.++.+|...                     +.+++..|.+|+||||+||..|+.+++++|++.+.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~---------------------~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~   61 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD---------------------KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV   61 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC---------------------GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC---------------------CCcCcCcCCCCCCHHHHHHHhhhhccccccccccc
Confidence            357788888888888887777542                     56677888888888888888888888888888654


Q ss_pred             CccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCC
Q 007741          154 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGK  233 (591)
Q Consensus       154 ~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~  233 (591)
                      .  ....+..+.++++.|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+++ +.+++..+.+|.
T Consensus        62 ~--~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~-g~d~~~~~~~~~  137 (223)
T d1uoha_          62 P--VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEA  137 (223)
T ss_dssp             C--SCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSC
T ss_pred             c--cccccccccccccccccccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHC-CCCCCCcCCCCC
Confidence            3  3445556778888888888888888888887776 55667777777777777777777777766 344566677777


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcH
Q 007741          234 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT  313 (591)
Q Consensus       234 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~  313 (591)
                      ||||+|+..++.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+| ..|+.
T Consensus       138 t~L~~a~~~~~~~~~~~L~~~~~~i-~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad-~~~~d~~g~tpl~~A-~~~~~  214 (223)
T d1uoha_         138 TAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA-KGGLG  214 (223)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHC-CTTHH
T ss_pred             ccchhhhhcCCcchhhhhcccccee-eeccCCCCceeccccccCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHH-HCCCH
Confidence            7777777777777777777777766 55677777777777777777777777777776 667777777777776 35777


Q ss_pred             HHHHHHhc
Q 007741          314 EIVTELLS  321 (591)
Q Consensus       314 ~iv~~Ll~  321 (591)
                      +++++||+
T Consensus       215 ~i~~~Ll~  222 (223)
T d1uoha_         215 LILKRMVE  222 (223)
T ss_dssp             HHHHHHHC
T ss_pred             HHHhcccC
Confidence            77777765

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-35  Score=286.65  Aligned_cols=234  Identities=25%  Similarity=0.252  Sum_probs=185.6

Q ss_pred             cCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHH
Q 007741           70 TGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELL  149 (591)
Q Consensus        70 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll  149 (591)
                      .+++|.||||.||+.|+.+++++||+....                   ...++..|..|.||||+||..|+.+++++|+
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~-------------------~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll   65 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAG-------------------HEYLDLQNDLGQTALHLAAILGEASTVEKLY   65 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTT-------------------SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------cccccCcCCCCCCccchHHhhcccccccccc
Confidence            578999999999999999999999975210                   3447888999999999999999999999999


Q ss_pred             hcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCC---------CCC---HHHHHHHcCCHHHHHHH
Q 007741          150 KYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS---------NAT---PLVSAATRGHTAVVNEL  217 (591)
Q Consensus       150 ~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~---------g~t---pL~~A~~~g~~~~v~~L  217 (591)
                      ++|++  ++..|.+|.||||+|+..++.+++++|++............         ..+   ++..............+
T Consensus        66 ~~ga~--i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (255)
T d1oy3d_          66 AAGAG--VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR  143 (255)
T ss_dssp             HTTCC--SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------
T ss_pred             ccccc--ccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHH
Confidence            98755  57789999999999999999999999999865532211100         011   11111111111112222


Q ss_pred             HhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCC
Q 007741          218 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD  297 (591)
Q Consensus       218 L~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d  297 (591)
                      .......++..|.+|.||||+|+..|+.+++++|++.+++.....+..|.||||+|++.|+.+++++|+++|++ ++.+|
T Consensus       144 ~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad-in~~d  222 (255)
T d1oy3d_         144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARM  222 (255)
T ss_dssp             CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred             hhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC-CCCCC
Confidence            22234445667899999999999999999999999999998777788999999999999999999999999988 79999


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHhcCCCCC
Q 007741          298 KFGNTALHVATRKKRTEIVTELLSLPDTN  326 (591)
Q Consensus       298 ~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d  326 (591)
                      .+|+||||+|+..++.+++++|+++ |++
T Consensus       223 ~~g~t~L~~A~~~~~~~i~~~Ll~~-Ga~  250 (255)
T d1oy3d_         223 YGGRTPLGSALLRPNPILARLLRAH-GAP  250 (255)
T ss_dssp             TTSCCHHHHHHTSSCHHHHHHHHHT-TCC
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHc-CCC
Confidence            9999999999999999999999995 886

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-34  Score=272.43  Aligned_cols=220  Identities=26%  Similarity=0.341  Sum_probs=201.1

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc
Q 007741          129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  208 (591)
Q Consensus       129 g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  208 (591)
                      +.+.|+.+|..|+.+.|+.++... +..++.+|..|+||||+|+..|+.+++++|++.+... ...+..+.++++.++..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccc
Confidence            468999999999999998888754 4457889999999999999999999999999998877 45566788999999999


Q ss_pred             CCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHc
Q 007741          209 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA  288 (591)
Q Consensus       209 g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  288 (591)
                      |+.+++++|++++ .+++..|.+|.||||+|+..|+.+++++|+++|.++ +..|..|.||||+|+..++.+++++|++.
T Consensus        81 ~~~~i~~~Ll~~~-~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          81 GRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhHHHhccC-ceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            9999999999984 567889999999999999999999999999999988 67799999999999999999999999999


Q ss_pred             CcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHh
Q 007741          289 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR  359 (591)
Q Consensus       289 ~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~  359 (591)
                      +.+ ++.+|..|+||||+|+..|+.+++++|++. |+|++.+|..|+||||+|. .+    +.+|++.|++
T Consensus       159 ~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~-Gad~~~~d~~g~tpl~~A~-~~----~~~i~~~Ll~  222 (223)
T d1uoha_         159 KAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKTPLQVAK-GG----LGLILKRMVE  222 (223)
T ss_dssp             TCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHCC-TT----HHHHHHHHHC
T ss_pred             cce-eeeccCCCCceeccccccCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH-CC----CHHHHhcccC
Confidence            988 899999999999999999999999999994 9999999999999999985 46    7788888765

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-34  Score=273.75  Aligned_cols=225  Identities=24%  Similarity=0.240  Sum_probs=202.9

Q ss_pred             CcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCc--ccCCCCCCCHHHHHHH
Q 007741          130 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS--QTTGPSNATPLVSAAT  207 (591)
Q Consensus       130 ~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~A~~  207 (591)
                      .||||+||..|+.++|+.|++.. +..++.+|.+|+||||+|+..|+.+++++|+++|+++.  ...+..|.+|+++++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            48999999999999999999864 34578899999999999999999999999999998763  3567789999999999


Q ss_pred             cCCHHHHHHHHhcCCC-cceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHH
Q 007741          208 RGHTAVVNELLSKDGG-LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL  286 (591)
Q Consensus       208 ~g~~~~v~~LL~~~~~-~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  286 (591)
                      .+..++++.++..... .....+..+.|+++.++..++.++++.|++.+... ...|..|+||||+|+..|+.+++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhccccccccccc
Confidence            9999999999877433 34446778999999999999999999999999887 667999999999999999999999999


Q ss_pred             HcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcc
Q 007741          287 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  363 (591)
Q Consensus       287 ~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~  363 (591)
                      +.++..++.+|.+|+||||+|+..|+.+++++|++..|+|++.+|.+|+||||+|.       ..+++++|++.|++
T Consensus       159 ~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~-------~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL-------NEQVKKFFLNNVVD  228 (229)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS-------CHHHHHHHHHHCCC
T ss_pred             ccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh-------hHHHHHHHHHcCCC
Confidence            99877789999999999999999999999999997669999999999999999997       34689999999875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-33  Score=267.74  Aligned_cols=225  Identities=23%  Similarity=0.248  Sum_probs=200.5

Q ss_pred             CcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 007741           75 DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTK  154 (591)
Q Consensus        75 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~  154 (591)
                      ++|||.||+.|+.+.++.||+..                     +..++.+|.+|.||||+|+..|+.+++++|+++|++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~---------------------~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~   59 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK---------------------PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN   59 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC---------------------GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTT
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC---------------------CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcc
Confidence            48999999999999999999752                     567899999999999999999999999999999876


Q ss_pred             ccC-ccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCC
Q 007741          155 EGL-TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL-SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG  232 (591)
Q Consensus       155 ~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~-~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g  232 (591)
                      .+. ...+..|.+|+|+|+..+..++++.++..+... ....+..+.+|++.++..++.++++.|++. +......+.+|
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g  138 (229)
T d1ixva_          60 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFN  138 (229)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhh-cccccccCCCC
Confidence            543 456778999999999999999999999987654 345667789999999999999999999988 45567788999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHH-cCcccccCCCCCCCcHHHHHHHcC
Q 007741          233 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE-ADAAIVMLPDKFGNTALHVATRKK  311 (591)
Q Consensus       233 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~-~~~~~~~~~d~~g~T~Lh~A~~~g  311 (591)
                      .||||+|+..|+.+++++|++.++...+.+|.+|+||||+|++.|+.+++++|++ .|++ ++.+|.+|+||||+|+.  
T Consensus       139 ~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad-~~~~d~~g~t~l~~A~~--  215 (229)
T d1ixva_         139 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALN--  215 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCCCTTSCCTGGGCSC--
T ss_pred             CCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCC-CCCcCCCCCCHHHHHhh--
Confidence            9999999999999999999999876668889999999999999999999999997 4777 89999999999999984  


Q ss_pred             cHHHHHHHhcCCCCC
Q 007741          312 RTEIVTELLSLPDTN  326 (591)
Q Consensus       312 ~~~iv~~Ll~~~g~d  326 (591)
                       .+++++|++ .|+|
T Consensus       216 -~~~~~~Ll~-~g~d  228 (229)
T d1ixva_         216 -EQVKKFFLN-NVVD  228 (229)
T ss_dssp             -HHHHHHHHH-HCCC
T ss_pred             -HHHHHHHHH-cCCC
Confidence             589999998 4775

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-32  Score=269.34  Aligned_cols=262  Identities=28%  Similarity=0.364  Sum_probs=227.8

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccC-CCCCcHHHHHHHhCcHHHHHHHHhcC
Q 007741           74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVN-ELGETALFTAADKGHIEVVNELLKYS  152 (591)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-~~g~TpL~~Aa~~g~~~~v~~Ll~~~  152 (591)
                      ++|+||.|++.|+.++|++||+.                      ++.++.++ ..|.||||+|+..|+.+++++|++.+
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~----------------------G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~   62 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEG----------------------GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG   62 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT----------------------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHC----------------------CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccc
Confidence            45999999999999999999987                      66676554 57999999999999999999999976


Q ss_pred             CCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc--------
Q 007741          153 TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL--------  224 (591)
Q Consensus       153 ~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~--------  224 (591)
                      ..  ....+..+.+|.+.|+..+..+....+++...+. ...+..+.++++.|+..|+...+..++......        
T Consensus        63 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (285)
T d1wdya_          63 AD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE  139 (285)
T ss_dssp             CC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH
T ss_pred             cc--ccccccccchhhHHHhhcCCccccchhhhhcccc-cccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchh
Confidence            54  4566777899999999999999999999987765 556788999999999999999999998763321        


Q ss_pred             -ceecCCCCCcHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCcHHHHHHh----CCCHHHHHHHHHcCcccccCCCC
Q 007741          225 -LEISRSNGKNALHFAARQGHVDVVKALLSK-DPQLARRTDKKGQTALHMAVK----GQSCEVVKLLLEADAAIVMLPDK  298 (591)
Q Consensus       225 -~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~----~~~~~~v~~Ll~~~~~~~~~~d~  298 (591)
                       ....+..|.||||+|++.|+.+++++|++. +.++ +..+..|.++++.+..    .+..+++++|+++|++ ++.+|.
T Consensus       140 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~~  217 (285)
T d1wdya_         140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGE  217 (285)
T ss_dssp             HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCT
T ss_pred             hhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHHCCCC-CCccCC
Confidence             122356799999999999999999999976 5666 7778899998887654    3345799999999998 788999


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCccccc
Q 007741          299 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRAN  366 (591)
Q Consensus       299 ~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~  366 (591)
                      .|.||||.|++.|+.+++++|++..|++++.+|.+|+||||+|++.+    +.+++++|+++||+...
T Consensus       218 ~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~----~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK----LKKIAELLCKRGASTDC  281 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT----CHHHHHHHHHHSSCSCC
T ss_pred             CCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC----CHHHHHHHHHCCCCCCc
Confidence            99999999999999999999998789999999999999999999999    89999999999998654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=4.5e-34  Score=281.11  Aligned_cols=257  Identities=22%  Similarity=0.271  Sum_probs=208.7

Q ss_pred             CcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccC-CCCCcHHHHHHHhCcHHHHHHHHhcC-
Q 007741           75 DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVN-ELGETALFTAADKGHIEVVNELLKYS-  152 (591)
Q Consensus        75 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-~~g~TpL~~Aa~~g~~~~v~~Ll~~~-  152 (591)
                      +||||++++.+..+.+..+|.+                       ..+|..+ .+|+||||+||..|+.++|++|+.+. 
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~-----------------------~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~   57 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITR-----------------------ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA   57 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCST-----------------------TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHh-----------------------cCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcch
Confidence            4899987777655555555543                       2244444 46999999999999999998886542 


Q ss_pred             -----CCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCC--Ccc
Q 007741          153 -----TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG--GLL  225 (591)
Q Consensus       153 -----~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~--~~~  225 (591)
                           .+.+++.+|.+|+||||+|+..|+.+++++|+++|+++ +..+..|.|||++|+..++.+++..+.....  ...
T Consensus        58 ~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~  136 (277)
T d2fo1e1          58 KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI  136 (277)
T ss_dssp             HHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT
T ss_pred             hHHHHcCCCccccCCCCCeeecccccccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccc
Confidence                 12356788999999999999999999999999999997 6678899999999999999999998876522  234


Q ss_pred             eecCCCCCcHHHHHHHcCCHH---HHHHHHhcCc-------ccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccC
Q 007741          226 EISRSNGKNALHFAARQGHVD---VVKALLSKDP-------QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML  295 (591)
Q Consensus       226 ~~~~~~g~tpLh~A~~~g~~~---~v~~Ll~~~~-------~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~  295 (591)
                      +..+..+.++.+.+...+..+   .+..+.+...       ......+..|+||||+++..++.+++++++.......+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~  216 (277)
T d2fo1e1         137 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK  216 (277)
T ss_dssp             SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred             cccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccc
Confidence            456788999999999877644   3444443321       112345778999999999999999999888766555888


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhc
Q 007741          296 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARC  360 (591)
Q Consensus       296 ~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~  360 (591)
                      +|..|+||||+|++.|+.+++++|+++ |+|++.+|..|+||||+|++.+    +.+++++|.++
T Consensus       217 ~d~~g~tpL~~A~~~g~~~iv~~Ll~~-gadin~~d~~G~T~L~~A~~~~----~~~iv~lL~~c  276 (277)
T d2fo1e1         217 QDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANN----HHNIVDIFDRC  276 (277)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTT----CHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHcC----CHHHHHHHHHh
Confidence            999999999999999999999999995 9999999999999999999999    89999999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=1.5e-32  Score=272.46  Aligned_cols=236  Identities=26%  Similarity=0.315  Sum_probs=197.6

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcC
Q 007741           73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYS  152 (591)
Q Consensus        73 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~  152 (591)
                      ++.|+||.||..|+.++|++||+.                      ++++|..|.+|.||||+|+..|+.++|++|++++
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~----------------------Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~   96 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLER----------------------GADINYANVDGLTALHQACIDDNVDMVKFLVENG   96 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH----------------------CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHC----------------------CCCCCccCCCCCcHHHHHHhcCCceeeeeecccc
Confidence            455999999999999999999986                      7778999999999999999999999999999987


Q ss_pred             CCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCC
Q 007741          153 TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG  232 (591)
Q Consensus       153 ~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g  232 (591)
                      .+  ....+..+.+||+.|+..++.++++.|++++... ...+..+.+|+++|+..++.+.++.++...+.........+
T Consensus        97 ~~--~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~  173 (291)
T d1s70b_          97 AN--INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEE  173 (291)
T ss_dssp             CC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             cc--cccccccccccccccccccccchhhcccccCccc-ccccccCccccccccccccchhccccccccccccccccccc
Confidence            65  4566778999999999999999999999999876 56788999999999999999999999977544322221111


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCc
Q 007741          233 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR  312 (591)
Q Consensus       233 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~  312 (591)
                      ..+.       .......+.....+. ...+..|.||||.|+..|+.++++.|++.|++ ++.+|.+|+||||+|+..|+
T Consensus       174 ~~~~-------~~~~~~~~~~~~~~~-~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~  244 (291)
T d1s70b_         174 ERIM-------LRDARQWLNSGHIND-VRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGK  244 (291)
T ss_dssp             HHHH-------HHHHHHHHHHTCCCC-CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred             cccc-------cccchhhhccccccc-ccccCCCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCC
Confidence            1111       122223333333333 45688899999999999999999999999998 78999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccccCCCCCHHHHHhh
Q 007741          313 TEIVTELLSLPDTNVNALTRDHKTALDIAEG  343 (591)
Q Consensus       313 ~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~  343 (591)
                      .++|++|++ .|+|++.+|+.|+||||+|++
T Consensus       245 ~~iv~lLl~-~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         245 EEACRILVE-NLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HHHHHHHHH-TTCCTTCCCTTSCCTTTSCCS
T ss_pred             HHHHHHHHH-CCCCCCCcCCCCCCHHHHHHH
Confidence            999999999 599999999999999999964

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=3.4e-31  Score=260.37  Aligned_cols=236  Identities=22%  Similarity=0.242  Sum_probs=194.3

Q ss_pred             cCCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHH
Q 007741           70 TGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELL  149 (591)
Q Consensus        70 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll  149 (591)
                      .+.+|.||||+||..|+.++++.|+....              ...--.|+++|.+|.+|+||||+|+..|+.++|++|+
T Consensus        29 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~--------------~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll   94 (277)
T d2fo1e1          29 DPRHNRTVLHWIASNSSAEKSEDLIVHEA--------------KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM   94 (277)
T ss_dssp             CCSSCCCHHHHHHCTTCCSCCTTHHHHHH--------------HHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHhcch--------------hHHHHcCCCccccCCCCCeeecccccccccccccccc
Confidence            34579999999999999999999985311              1111136789999999999999999999999999999


Q ss_pred             hcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCC--CcccCCCCCCCHHHHHHHcCCHH---HHHHHHhcCC--
Q 007741          150 KYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS--LSQTTGPSNATPLVSAATRGHTA---VVNELLSKDG--  222 (591)
Q Consensus       150 ~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpL~~A~~~g~~~---~v~~LL~~~~--  222 (591)
                      ++|++  ++.+|..|.|||+.|+..++.++++.+......  .....+..+.++.+.+...+..+   .+..+.+...  
T Consensus        95 ~~Gad--~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (277)
T d2fo1e1          95 KAGAD--PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV  172 (277)
T ss_dssp             HTTCC--SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS
T ss_pred             ccccc--cccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccc
Confidence            98765  567888999999999999999999999876421  12455777889999999877643   4444443321  


Q ss_pred             -----CcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCC
Q 007741          223 -----GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD  297 (591)
Q Consensus       223 -----~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d  297 (591)
                           ...+..+..|.||||.++..++.+++++++.......+..|..|+||||+|++.|+.+++++|+++|++ ++.+|
T Consensus       173 ~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad-in~~d  251 (277)
T d2fo1e1         173 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVD  251 (277)
T ss_dssp             SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCC
T ss_pred             cccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCcC
Confidence                 112345678999999999999999999877665555577899999999999999999999999999998 89999


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHhcC
Q 007741          298 KFGNTALHVATRKKRTEIVTELLSL  322 (591)
Q Consensus       298 ~~g~T~Lh~A~~~g~~~iv~~Ll~~  322 (591)
                      .+|+||||+|+++|+.+++++|++.
T Consensus       252 ~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         252 ATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             SSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999999999873

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-29  Score=239.86  Aligned_cols=221  Identities=24%  Similarity=0.283  Sum_probs=194.5

Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHhcC--CCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHH
Q 007741          127 ELGETALFTAADKGHIEVVNELLKYS--TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS  204 (591)
Q Consensus       127 ~~g~TpL~~Aa~~g~~~~v~~Ll~~~--~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  204 (591)
                      ++|+||||+||..|+.++|+.|++..  .+.+++..|..|+||||+|+..|+.+++++|++++++. ...+..+.++++.
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~   79 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHL   79 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccc-ccccccccccccc
Confidence            36999999999999999999998631  23456788999999999999999999999999999887 5667789999999


Q ss_pred             HHHcCCHHHHHHHHhcCCC---cceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHH
Q 007741          205 AATRGHTAVVNELLSKDGG---LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV  281 (591)
Q Consensus       205 A~~~g~~~~v~~LL~~~~~---~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~  281 (591)
                      |...++.++++.+......   ..+.......++|+.+.........+.|.....+.....+..|.++|+.|+..+..++
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence            9999999999888765322   2334456788999999999999999999998888777778899999999999999999


Q ss_pred             HHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHH
Q 007741          282 VKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIK  354 (591)
Q Consensus       282 v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~  354 (591)
                      ++.+++.+.. .+.+|..|+||||+|+..|+.+++++|++. |+|++.+|.+|+||||+|++.+    +.+|+
T Consensus       160 ~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-Gad~n~~d~~G~TpL~~A~~~~----~~div  226 (228)
T d1k1aa_         160 VQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRR----VIDIL  226 (228)
T ss_dssp             HHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSSHH----HHHHH
T ss_pred             hhhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHhCC----Ccccc
Confidence            9999999887 788899999999999999999999999995 9999999999999999998766    55554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.6e-30  Score=240.25  Aligned_cols=224  Identities=22%  Similarity=0.272  Sum_probs=196.4

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhc
Q 007741           72 RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKY  151 (591)
Q Consensus        72 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~  151 (591)
                      .+|+||||+||+.|+.++++.|++...                  -.+..++.+|.+|.||||+|+..|+.+++++|+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~------------------~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~   62 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQ------------------QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA   62 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHH------------------HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHH------------------HCCCCCCccCCCCCccceehhcccccccccccccc
Confidence            369999999999999999999985311                  01667899999999999999999999999999998


Q ss_pred             CCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCC---cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceec
Q 007741          152 STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL---SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS  228 (591)
Q Consensus       152 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~---~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~  228 (591)
                      ++..  +..+..|.++++.|...++.++++.+.......   .........++|+.+...........|...........
T Consensus        63 ga~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~  140 (228)
T d1k1aa_          63 GASP--MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD  140 (228)
T ss_dssp             TCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             cccc--cccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccccccccc
Confidence            7654  566778999999999999999999887654332   23445667899999999999999999998877666677


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 007741          229 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  308 (591)
Q Consensus       229 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~  308 (591)
                      +..+.++|+.|+..+..++++.+++.+... +..|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+
T Consensus       141 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad-~n~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         141 IKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVAR  218 (228)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCS
T ss_pred             ccchhhHHHHHHHhhhhhhhhhhhhhcccc-ccccccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH
Confidence            889999999999999999999999999887 66799999999999999999999999999998 8999999999999999


Q ss_pred             HcCcHHHHH
Q 007741          309 RKKRTEIVT  317 (591)
Q Consensus       309 ~~g~~~iv~  317 (591)
                      ++|+.++|+
T Consensus       219 ~~~~~divk  227 (228)
T d1k1aa_         219 SRRVIDILR  227 (228)
T ss_dssp             SHHHHHHHT
T ss_pred             hCCCccccC
Confidence            999999875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.4e-28  Score=238.27  Aligned_cols=235  Identities=24%  Similarity=0.262  Sum_probs=206.1

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHh
Q 007741           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLK  150 (591)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~  150 (591)
                      +..|.||||+|+..|+.++++.|++.                      +...+..+..+.+|.+.|+..+..+....+++
T Consensus        36 ~~~g~tpL~~A~~~~~~eiv~~L~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (285)
T d1wdya_          36 EEGGWTPLHNAVQMSREDIVELLLRH----------------------GADPVLRKKNGATPFLLAAIAGSVKLLKLFLS   93 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHT----------------------TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHhhhhccc----------------------cccccccccccchhhHHHhhcCCccccchhhh
Confidence            45789999999999999999999986                      44566778889999999999999999999999


Q ss_pred             cCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcc---------cCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 007741          151 YSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ---------TTGPSNATPLVSAATRGHTAVVNELLSKD  221 (591)
Q Consensus       151 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~---------~~~~~g~tpL~~A~~~g~~~~v~~LL~~~  221 (591)
                      ....  ....+..|.|+++.|+..|+..+++.++....+...         ..+..|.||||+|+..|+.+++++|+++.
T Consensus        94 ~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  171 (285)
T d1wdya_          94 KGAD--VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM  171 (285)
T ss_dssp             TTCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS
T ss_pred             hccc--ccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhcc
Confidence            7543  355677899999999999999999999987665421         33456899999999999999999999988


Q ss_pred             CCcceecCCCCCcHHHHHHHc----CCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHc-CcccccCC
Q 007741          222 GGLLEISRSNGKNALHFAARQ----GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA-DAAIVMLP  296 (591)
Q Consensus       222 ~~~~~~~~~~g~tpLh~A~~~----g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~-~~~~~~~~  296 (591)
                      +.+++..+..|.++++.+...    +..+++++|+++|+++ +.+|..|.||||.|++.|+.+++++|++. |.+ ++.+
T Consensus       172 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~d-in~~  249 (285)
T d1wdya_         172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDT  249 (285)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCC
T ss_pred             CCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcHHHHHHHHHcCCCC-CcCC
Confidence            888888999999988887654    3457999999999998 67799999999999999999999999986 555 8999


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccC
Q 007741          297 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTR  332 (591)
Q Consensus       297 d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~  332 (591)
                      |.+|+||||+|++.|+.+++++||+ .|+|+|++|.
T Consensus       250 d~~G~TpL~~A~~~~~~eiv~~Ll~-~GAd~n~~d~  284 (285)
T d1wdya_         250 DSDGKTALLLAVELKLKKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHH-HSSCSCCSSC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcccC
Confidence            9999999999999999999999999 5999999884

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.6e-30  Score=243.42  Aligned_cols=192  Identities=26%  Similarity=0.293  Sum_probs=117.3

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcC--CCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHH
Q 007741          128 LGETALFTAADKGHIEVVNELLKYS--TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  205 (591)
Q Consensus       128 ~g~TpL~~Aa~~g~~~~v~~Ll~~~--~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  205 (591)
                      +|+||||+|+..|+.++++.|++..  ...+++.+|.+|+||||+|+..|+.+++++|++.|+++ ...|..|.|||+++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccc-cccccccccccccc
Confidence            5889999999999876665555432  12346778888999999999999999999998888887 56777888888888


Q ss_pred             HHcCCHHHHHHHHhcCCC-----cceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHH
Q 007741          206 ATRGHTAVVNELLSKDGG-----LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE  280 (591)
Q Consensus       206 ~~~g~~~~v~~LL~~~~~-----~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  280 (591)
                      +..|+.++++.|+.....     .......+|.||||.|+..++.+++++|++.++......+.+|.||||+|++.|+.+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHH
Confidence            888888888888765322     111222334455555555555555555555444443333344444444444444444


Q ss_pred             HHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhc
Q 007741          281 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  321 (591)
Q Consensus       281 ~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~  321 (591)
                      ++++|+++|++ ++.+|.+|+||||+|+..++.+++++|++
T Consensus       160 ~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~  199 (221)
T d1iknd_         160 LVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ  199 (221)
T ss_dssp             HHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             HHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            44444444444 44444444444444444444444444444

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-29  Score=240.39  Aligned_cols=198  Identities=24%  Similarity=0.261  Sum_probs=171.9

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcC
Q 007741           73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYS  152 (591)
Q Consensus        73 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~  152 (591)
                      +|+||||+|+..|+.++++.|++....                  .+..+|..|.+|+||||+|+..|+.+++++|++.|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~------------------~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g   62 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKG------------------DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG   62 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----------------------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHh------------------CCCCcccCCCCCCcccccccccccccccccccccc
Confidence            589999999999998887777654321                  16678999999999999999999999999999987


Q ss_pred             CCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCC-----cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccee
Q 007741          153 TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL-----SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI  227 (591)
Q Consensus       153 ~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~  227 (591)
                      ++  .+..|..|.||||.|+..|+.++++.|++.+...     .......|.||||.|+..++.+++++|+..+......
T Consensus        63 ~d--~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~  140 (221)
T d1iknd_          63 CD--PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ  140 (221)
T ss_dssp             CC--SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred             cc--ccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccc
Confidence            65  5778999999999999999999999999986543     2334556899999999999999999999986665555


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcc
Q 007741          228 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA  291 (591)
Q Consensus       228 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~  291 (591)
                      .+.+|.||||+|++.|+.+++++|+++|+++ +.+|.+|+||||+|++.++.+++++|++...+
T Consensus       141 ~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~-~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         141 EPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             cccCCCCccccccccccHHHHHHHHhcCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            6678999999999999999999999999997 77899999999999999999999999997654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=6.1e-28  Score=226.71  Aligned_cols=196  Identities=26%  Similarity=0.366  Sum_probs=128.8

Q ss_pred             cccccc-cCCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCC
Q 007741          119 SSVVNE-VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS  197 (591)
Q Consensus       119 ~~~~~~-~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  197 (591)
                      +.+++. .|.+|.||||+||..|+.+++++|++.++.  ++..+..+.++++.++..++.+...................
T Consensus        12 g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~--~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (209)
T d1ot8a_          12 GAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD--ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHD   89 (209)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTT
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence            555654 466777777777777777777777776544  34566666777777777777666666665555544455555


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCC
Q 007741          198 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ  277 (591)
Q Consensus       198 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  277 (591)
                      +.++.+.+.........+.|... +..++..+..|.|||+.++..+..++++.+++.+.++ +..|..|.||||+|+..|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~TpL~~A~~~g  167 (209)
T d1ot8a_          90 GTTPLILAARLAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREG  167 (209)
T ss_dssp             CCCHHHHHHHTTCTTHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             ccccccccccccchhhhhhhhhh-cccccccCCCCCCcchhhcccCcceeeeeeccccccc-cccccccccccchhcccc
Confidence            66666666666666666666655 3445556666677777777777777777777666665 455666777777777777


Q ss_pred             CHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHH
Q 007741          278 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  319 (591)
Q Consensus       278 ~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~L  319 (591)
                      +.+++++|+++|++ ++.+|..|+||||+|+++|+.++|++|
T Consensus       168 ~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         168 SYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            77777777776666 566666677777777777777766654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=9e-28  Score=225.55  Aligned_cols=206  Identities=26%  Similarity=0.313  Sum_probs=187.6

Q ss_pred             HHHHHHHHhcCCCccCcc-CCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 007741          142 IEVVNELLKYSTKEGLTR-KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK  220 (591)
Q Consensus       142 ~~~v~~Ll~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~  220 (591)
                      .|+|++|+++|++  ++. .|.+|.||||+||..|+.+++++|++.++++ +..+..+.++++.++..++..........
T Consensus         2 ~~~v~~Ll~~g~d--in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQGAE--LNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHHHH--HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCC--cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccc
Confidence            5899999998865  454 5788999999999999999999999999997 66788899999999999999888888877


Q ss_pred             CCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCC
Q 007741          221 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG  300 (591)
Q Consensus       221 ~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g  300 (591)
                      ...........|.++.+.+.........+.|.+.+.++ +..+..|+||||+++..+..++++.+++.+.+ ++..|..|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g  156 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKD  156 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccc-cccccccc
Confidence            66656666778999999999999999999999999887 66799999999999999999999999999988 78899999


Q ss_pred             CcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHH
Q 007741          301 NTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCL  357 (591)
Q Consensus       301 ~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L  357 (591)
                      +||||+|+..|+.+++++|++ .|+|++.+|..|+||||+|++.+    +.+++++|
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tpl~~A~~~~----~~~iv~lL  208 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLD-NFANREITDHMDRLPRDVASERL----HHDIVRLL  208 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT----CHHHHHHH
T ss_pred             ccccchhccccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcC----CHHHHhhc
Confidence            999999999999999999999 59999999999999999999999    88898876

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=1.3e-27  Score=236.66  Aligned_cols=237  Identities=19%  Similarity=0.207  Sum_probs=191.3

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHH
Q 007741          126 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  205 (591)
Q Consensus       126 n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  205 (591)
                      +.++.||||.||..|+.++|++||++|++  ++..|.+|.||||+|+.+|+.+++++|++++.+. ...+..+.+||+.|
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gad--vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a  113 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAA  113 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCcHHHHHHhcCCceeeeeeccccccc-cccccccccccccc
Confidence            34567999999999999999999998865  5788999999999999999999999999999886 56677899999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHH
Q 007741          206 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  285 (591)
Q Consensus       206 ~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  285 (591)
                      +..++.++++.|++++ ...+..+..+.+|+++|+..++.+.++.++.............+..+.       .......+
T Consensus       114 ~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~-------~~~~~~~~  185 (291)
T d1s70b_         114 ASCGYLDIAEYLISQG-AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM-------LRDARQWL  185 (291)
T ss_dssp             HHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-------HHHHHHHH
T ss_pred             ccccccchhhcccccC-cccccccccCccccccccccccchhccccccccccccccccccccccc-------cccchhhh
Confidence            9999999999999884 556778899999999999999999999998653322111111111111       11222233


Q ss_pred             HHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcccc
Q 007741          286 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA  365 (591)
Q Consensus       286 l~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~  365 (591)
                      .... ......+..|.||||+|+..|+.++++.|++ .|+|++.+|..|+||||+|+..+    +.+++++|+++|++..
T Consensus       186 ~~~~-~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g----~~~iv~lLl~~Gadv~  259 (291)
T d1s70b_         186 NSGH-INDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWG----KEEACRILVENLCDME  259 (291)
T ss_dssp             HHTC-CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTT----CHHHHHHHHHTTCCTT
T ss_pred             cccc-cccccccCCCCChhhHHHHcCChhhhccccc-ceecccccccCCCCHHHHHHHcC----CHHHHHHHHHCCCCCC
Confidence            3333 2355678889999999999999999999999 59999999999999999999999    8999999999999877


Q ss_pred             cccCCchHHhhhhh
Q 007741          366 NELNQPRDELRKTV  379 (591)
Q Consensus       366 ~~~~~~~~~l~~~~  379 (591)
                      ...+...+.+..+.
T Consensus       260 ~~d~~G~TaL~~A~  273 (291)
T d1s70b_         260 AVNKVGQTAFDVAD  273 (291)
T ss_dssp             CCCTTSCCTTTSCC
T ss_pred             CcCCCCCCHHHHHH
Confidence            66555555665443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=4.4e-29  Score=253.61  Aligned_cols=231  Identities=19%  Similarity=0.163  Sum_probs=150.0

Q ss_pred             ccCCCCCcHhHHHHHcCCHHHHHHH---HcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHH
Q 007741           69 VTGRHNDTELHLAAQRGDLGAVKQI---LYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVV  145 (591)
Q Consensus        69 ~~~~~g~t~Lh~Aa~~g~~~~v~~L---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v  145 (591)
                      ..+..|.||||+||+.|+.++++.+   ++.                      ++.++.+|.+|.||||+||++||.++|
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~----------------------~~~in~~~~~g~taL~~Aa~~G~~~~v  142 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTS----------------------DEIVKVIQAENYQAFRLAAENGHLHVL  142 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--C----------------------CSSCC--CHHHHHHHHHHHHTTCHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhC----------------------CCcccccCCCCCCHHHHHHHCCCHHHH
Confidence            4466778888888888888777664   332                      667788888888888888888888888


Q ss_pred             HHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCc--ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 007741          146 NELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS--QTTGPSNATPLVSAATRGHTAVVNELLSKDGG  223 (591)
Q Consensus       146 ~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~  223 (591)
                      ++|+++|++.+....+.+|+||||+|+.+||.++|++|++.+++..  +..+.++.||++.|+.+||.+++++|++.+..
T Consensus       143 ~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         143 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             HHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             HHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence            8888877655443344567888888888888888888888876542  22334456777778888888888888876321


Q ss_pred             ccee-------cCCCCCcHHHHHHHcCCHHHHHHHHhcCcccc-cccC-------CCCCcHHHHHHhCCCHHHHHHHHHc
Q 007741          224 LLEI-------SRSNGKNALHFAARQGHVDVVKALLSKDPQLA-RRTD-------KKGQTALHMAVKGQSCEVVKLLLEA  288 (591)
Q Consensus       224 ~~~~-------~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~-~~~d-------~~g~t~Lh~A~~~~~~~~v~~Ll~~  288 (591)
                       ...       ....+.++++.+...+..+....+.....+.. ...+       ..+.++|+.|+..+..+++++|++.
T Consensus       223 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~  301 (346)
T d2ajaa1         223 -LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSI  301 (346)
T ss_dssp             -HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTS
T ss_pred             -cchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhC
Confidence             111       12233345555555444444444433322210 0011       1234677778888888888888876


Q ss_pred             Cccc----ccCCCCCCCcHHHHHHHcCcHHHHHHHhcC
Q 007741          289 DAAI----VMLPDKFGNTALHVATRKKRTEIVTELLSL  322 (591)
Q Consensus       289 ~~~~----~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~  322 (591)
                      +...    .+..+.+|+||||+|++.|+.++|++||+.
T Consensus       302 ~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         302 PGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             TTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             cChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            5431    223445678888888888888888888874

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.2e-25  Score=195.57  Aligned_cols=154  Identities=25%  Similarity=0.340  Sum_probs=84.0

Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC
Q 007741          131 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH  210 (591)
Q Consensus       131 TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  210 (591)
                      +|||+||..|+.++|++|+++|++  ++.+|..|.||||+|+ .|+.+++++|+++++++ ...+..|.+|++.++..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d--~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC--TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC--cCccCCcccccccccc-ccccccccccccccccc-ccccccCcccccccccccc
Confidence            455555555555555555554433  3444555555555443 45555555555555554 3444555555555555555


Q ss_pred             HHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcC
Q 007741          211 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD  289 (591)
Q Consensus       211 ~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~  289 (591)
                      .+.++.|+.. ....+..+..|.+|||+|+..++.+++++|+++++...+.+|..|+||||+|++.++.+++++|+++|
T Consensus        79 ~~~~~~l~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          79 LDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccc-cccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            5555555544 22344445555566666666666666666555555333455555666666666666666666665544

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.3e-25  Score=195.18  Aligned_cols=153  Identities=25%  Similarity=0.348  Sum_probs=141.2

Q ss_pred             hHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCH
Q 007741          166 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV  245 (591)
Q Consensus       166 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~  245 (591)
                      +|||+||..|+.++|+.|+++|+++ +..|..|.||||+|+ .|+.+++++|+++ +.+++..+..|.++++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~-~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccccccccccccc-ccccccccccCccccccccccccc
Confidence            8999999999999999999999997 678899999999886 7899999999988 455778899999999999999999


Q ss_pred             HHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcC
Q 007741          246 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL  322 (591)
Q Consensus       246 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~  322 (591)
                      +.++.|++.+.+. +..|..|.+|||+|+..++.+++++|+++++...+.+|.+|.||||+|++.++.+++++|+++
T Consensus        80 ~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          80 DTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999887 667999999999999999999999999999866899999999999999999999999999984

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=1.4e-27  Score=242.50  Aligned_cols=235  Identities=20%  Similarity=0.152  Sum_probs=171.1

Q ss_pred             ccccccCCCCCcHHHHHHHhCcHHHHHH---HHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCccc-CC
Q 007741          120 SVVNEVNELGETALFTAADKGHIEVVNE---LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT-TG  195 (591)
Q Consensus       120 ~~~~~~n~~g~TpL~~Aa~~g~~~~v~~---Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~-~~  195 (591)
                      ..++.++..|.||||+||++||.+++++   |++.+  .+++..|.+|+||||+||.+||.++|++|+++|+++... .+
T Consensus        81 ~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~--~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~  158 (346)
T d2ajaa1          81 SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD--EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ  158 (346)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CC--SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS
T ss_pred             hHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC--CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccc
Confidence            4466788899999999999999988776   56655  446778889999999999999999999999999987433 23


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCc--ceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccc------cCCCCC
Q 007741          196 PSNATPLVSAATRGHTAVVNELLSKDGGL--LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR------TDKKGQ  267 (591)
Q Consensus       196 ~~g~tpL~~A~~~g~~~~v~~LL~~~~~~--~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~------~d~~g~  267 (591)
                      .+|.||||+|+..||.+++++|++.++..  .+..+.+|.||+|.|+.+|+.+++++|++.|++....      ....+.
T Consensus       159 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  238 (346)
T d2ajaa1         159 AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV  238 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTH
T ss_pred             cCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhh
Confidence            46899999999999999999999985433  2334566788899999999999999999998876321      112223


Q ss_pred             cHHHHHHhCCCHHHHHHHHHcCcc-cccCCCC-------CCCcHHHHHHHcCcHHHHHHHhcCCCC----CcccccCCCC
Q 007741          268 TALHMAVKGQSCEVVKLLLEADAA-IVMLPDK-------FGNTALHVATRKKRTEIVTELLSLPDT----NVNALTRDHK  335 (591)
Q Consensus       268 t~Lh~A~~~~~~~~v~~Ll~~~~~-~~~~~d~-------~g~T~Lh~A~~~g~~~iv~~Ll~~~g~----d~~~~d~~G~  335 (591)
                      ++++.+...+..+....+...... ..+..+.       .+.++|+.|+..++.+++++|++....    +.+..+.+|+
T Consensus       239 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~  318 (346)
T d2ajaa1         239 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN  318 (346)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCC
T ss_pred             hHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCC
Confidence            444444443333333333222211 0111111       234789999999999999999986432    2344566899


Q ss_pred             CHHHHHhhCCCChhhHHHHHHHHhc
Q 007741          336 TALDIAEGLPSSEEASEIKDCLARC  360 (591)
Q Consensus       336 t~L~~A~~~~~~~~~~~i~~~L~~~  360 (591)
                      ||||+|++.|    +.+++++|++.
T Consensus       319 T~LhlA~~~G----n~e~v~lLL~~  339 (346)
T d2ajaa1         319 ELLRLALRLG----NQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHT----CTTHHHHHTTS
T ss_pred             cHHHHHHHcC----cHHHHHHHhCC
Confidence            9999999999    88999999865

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.1e-24  Score=190.72  Aligned_cols=149  Identities=28%  Similarity=0.377  Sum_probs=79.1

Q ss_pred             hHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCH
Q 007741          166 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV  245 (591)
Q Consensus       166 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~  245 (591)
                      ||||.|++.|+.++|++|+++|++..  .|..|.||||+|+..++.++++.++..... ....+..+.++++.++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCcccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            44444444444444444444444332  244444444444444444444444443222 122334445555555555555


Q ss_pred             HHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHH
Q 007741          246 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  319 (591)
Q Consensus       246 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~L  319 (591)
                      ++++++++.+.+. +.+|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|.||||+|+.+|+.+++++|
T Consensus        81 ~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccC-CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            6666555555554 34456666666666666666666666666655 555666666666666666666666544

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.4e-24  Score=190.64  Aligned_cols=150  Identities=27%  Similarity=0.356  Sum_probs=75.9

Q ss_pred             HHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHH
Q 007741          168 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV  247 (591)
Q Consensus       168 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~  247 (591)
                      ||.||..|+.++|+.|++.++...+..|..|.||||+|+ .|+.+++++|+++ +.+++..+..|.+|++.++..++.++
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~~~~~~~~~~   83 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccc-cccccccccccccccccccccccccc
Confidence            444444444444444444322222334444444444443 2444444444444 22233444455555555555555555


Q ss_pred             HHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcC
Q 007741          248 VKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL  322 (591)
Q Consensus       248 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~  322 (591)
                      ++.++++++++ +.+|..|+||||+|+..|+.+++++|+ .+++ ++.+|.+|+||||+|++.|+.+++++|+++
T Consensus        84 ~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          84 LKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESD-LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccc-ccccCCCCeeecccccccccccccccc-cccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            55555555554 344555566666666666666655554 3444 455566666666666666666666666553

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=5.8e-24  Score=188.95  Aligned_cols=150  Identities=27%  Similarity=0.383  Sum_probs=136.9

Q ss_pred             CcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC
Q 007741          130 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG  209 (591)
Q Consensus       130 ~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  209 (591)
                      .||||.||+.|+.++|++||++|++.  . .|..|+||||+|+..++.++++.++...... ...+..+.++++.++...
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~--~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc--c-cccCCCccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            49999999999999999999998753  2 6889999999999999999999999988776 456677889999999999


Q ss_pred             CHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHH
Q 007741          210 HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  285 (591)
Q Consensus       210 ~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  285 (591)
                      +.+.+++++.++ ......|.+|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+.+|+.+++++|
T Consensus        79 ~~~~~~~l~~~~-~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          79 HANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cceeeecccccC-CccccccccCchHHHhhhhcchhheeeeccccccCC-cccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            999999999874 456778999999999999999999999999999998 67799999999999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.6e-24  Score=190.51  Aligned_cols=152  Identities=25%  Similarity=0.326  Sum_probs=141.8

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCH
Q 007741          200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC  279 (591)
Q Consensus       200 tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  279 (591)
                      ..|+.|+..|+.++++.||+..+.+++..|..|.||||+|+ .|+.+++++|++.+.++ +..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccc
Confidence            46999999999999999999888888999999999999987 48899999999999998 66788999999999999999


Q ss_pred             HHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHh
Q 007741          280 EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR  359 (591)
Q Consensus       280 ~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~  359 (591)
                      ++++.+++.+++ ++.+|..|+||||+|++.|+.+++++|+.  |++++.+|..|+||||+|+..+    +.+++++|++
T Consensus        82 ~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g----~~~iv~~Ll~  154 (156)
T d1bd8a_          82 DTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRG----AQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHHHHHHHSC----CHHHHHHHHT
T ss_pred             cccccccccccc-cccccCCCCeeeccccccccccccccccc--cccccccCCCCCCHHHHHHHcC----CHHHHHHHHh
Confidence            999999999988 78899999999999999999999998885  7999999999999999999999    8899999886


Q ss_pred             c
Q 007741          360 C  360 (591)
Q Consensus       360 ~  360 (591)
                      +
T Consensus       155 h  155 (156)
T d1bd8a_         155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            4

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.7e-24  Score=212.80  Aligned_cols=180  Identities=17%  Similarity=0.156  Sum_probs=113.8

Q ss_pred             CCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH---HHHHHHHhcCCCcceecCCCCCcHHH
Q 007741          161 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT---AVVNELLSKDGGLLEISRSNGKNALH  237 (591)
Q Consensus       161 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~---~~v~~LL~~~~~~~~~~~~~g~tpLh  237 (591)
                      |..|+||||+||..|+.++|++|+++|+++ ...|..|+||||.|+..++.   ..+..+++.........|..|+||||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh  182 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  182 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHH
Confidence            667778888888888888888888777776 45677777888877765542   11122222212234556777888888


Q ss_pred             HHHHcCC----H--------HHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHc--CcccccCCCCCCCcH
Q 007741          238 FAARQGH----V--------DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA--DAAIVMLPDKFGNTA  303 (591)
Q Consensus       238 ~A~~~g~----~--------~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~--~~~~~~~~d~~g~T~  303 (591)
                      .++..+.    .        .++.++++.+..........+.++++.+........+..+...  ....+|.+|.+|+||
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~Tp  262 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC  262 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred             HHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCH
Confidence            7775433    2        2344555665555455566677777777665555444432211  122378899999999


Q ss_pred             HHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 007741          304 LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  342 (591)
Q Consensus       304 Lh~A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~  342 (591)
                      ||+|++.|+.++|++|++. |+|++.+|+.|+||||+|+
T Consensus       263 Lh~A~~~g~~~iv~~Ll~~-GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         263 LNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHcC
Confidence            9999999999999999995 9999999999999999986

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.8e-23  Score=207.80  Aligned_cols=181  Identities=18%  Similarity=0.183  Sum_probs=126.0

Q ss_pred             ccccc-CCCCCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcH-------HHHHHHHhCCCCCcc
Q 007741          121 VVNEV-NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH-------AIVQVLLDHDPSLSQ  192 (591)
Q Consensus       121 ~~~~~-n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~-------~iv~~Ll~~~~~~~~  192 (591)
                      .+|.. |..|+||||+||..|+.++|++|+++|++  ++.+|..|+||||.||..++.       ++++++...    ..
T Consensus        98 dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad--~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~----~~  171 (301)
T d1sw6a_          98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN--RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC----LI  171 (301)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG----GG
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh----hh
Confidence            45644 89999999999999999999999998765  678899999999999987752       455555432    24


Q ss_pred             cCCCCCCCHHHHHHHcCC----HH--------HHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhc--Cccc
Q 007741          193 TTGPSNATPLVSAATRGH----TA--------VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQL  258 (591)
Q Consensus       193 ~~~~~g~tpL~~A~~~g~----~~--------~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~--~~~~  258 (591)
                      ..|..|+||||+++..+.    ..        ++.+++.............+.++++.+........+..+...  ....
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence            567889999999886554    22        334555555555555666677777777665554444322110  0111


Q ss_pred             ccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 007741          259 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  308 (591)
Q Consensus       259 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~  308 (591)
                      .+.+|..|+||||+|+++|+.+++++|+++|++ ++.+|+.|.||||+|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd-~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC-TTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHcC
Confidence            366799999999999999999999999999999 8999999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-21  Score=167.72  Aligned_cols=121  Identities=25%  Similarity=0.350  Sum_probs=88.0

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc
Q 007741          129 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  208 (591)
Q Consensus       129 g~TpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  208 (591)
                      +.++||+|+..|+.++|++|+++|++  ++..|..|.||||.|+ .|+.+++++|+++|+++.......+.||||+|+..
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad--~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN--PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC--TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc--cccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            45788888888888888888887654  4567777888888664 67888888888888777433333334677777777


Q ss_pred             CCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHh
Q 007741          209 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS  253 (591)
Q Consensus       209 g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~  253 (591)
                      |+.+++++|+++ +.+++..|.+|.||||+|++.|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccc-ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            777777777776 45566777777777777777777777777764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.2e-21  Score=167.59  Aligned_cols=119  Identities=22%  Similarity=0.280  Sum_probs=79.3

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCC-cHHHHHHhCC
Q 007741          199 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ-TALHMAVKGQ  277 (591)
Q Consensus       199 ~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~  277 (591)
                      .++||+|+..|+.+++++|+++ +.+++..+.+|.||||.|+ .|+.+++++|+++|+++ +..|..+. ||||+|++.|
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~-gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHT
T ss_pred             hhHHHHHHHCCCHHHHHHHHHc-CCccccccccccccccccc-ccccccccccccccccc-ccccccccccccccccccc
Confidence            3566666666666666666655 3445556666777776553 56777777777777666 33444443 5777777777


Q ss_pred             CHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCcHHHHHHHhc
Q 007741          278 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  321 (591)
Q Consensus       278 ~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~~~iv~~Ll~  321 (591)
                      +.+++++|+++|++ ++.+|.+|+||||+|+++|+.+++++|+.
T Consensus        81 ~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            77777777777766 66777777777777777777777777765

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=3.5e-22  Score=169.01  Aligned_cols=107  Identities=28%  Similarity=0.353  Sum_probs=95.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCc
Q 007741          233 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR  312 (591)
Q Consensus       233 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~g~  312 (591)
                      .|||++|++.|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccce-eeecccccccchhhhhhcCc
Confidence            47899999999999999999999887 66788999999999999999999999999988 78889999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 007741          313 TEIVTELLSLPDTNVNALTRDHKTALDIAE  342 (591)
Q Consensus       313 ~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~  342 (591)
                      .+++++|++. |+|++.+|.+|+||||+|.
T Consensus        81 ~~~v~~Ll~~-Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSK-GADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTT-CCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhhcc-cccceeeCCCCCCHHHHHh
Confidence            9999999984 8999999999999998874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=5.4e-22  Score=167.79  Aligned_cols=105  Identities=29%  Similarity=0.368  Sum_probs=77.1

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhCCCH
Q 007741          200 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC  279 (591)
Q Consensus       200 tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  279 (591)
                      |||++|+..|+.+++++|+++ +.+++..+.+|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+.+|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHh-hhcccccccccccccccccccccccccccccccccee-eecccccccchhhhhhcCch
Confidence            566666666666666666665 3445666777777777777777777777777777776 55677788888888888888


Q ss_pred             HHHHHHHHcCcccccCCCCCCCcHHHHH
Q 007741          280 EVVKLLLEADAAIVMLPDKFGNTALHVA  307 (591)
Q Consensus       280 ~~v~~Ll~~~~~~~~~~d~~g~T~Lh~A  307 (591)
                      +++++|+++|++ ++.+|.+|+||||+|
T Consensus        82 ~~v~~Ll~~Gad-~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGAD-KTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCC-SSSSSSSTCCCCCTC
T ss_pred             hhhhhhhccccc-ceeeCCCCCCHHHHH
Confidence            888888887776 677777888888777

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.9e-21  Score=163.86  Aligned_cols=121  Identities=23%  Similarity=0.310  Sum_probs=91.4

Q ss_pred             cHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHhCcHHHHHHHHhcCCCc
Q 007741           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKE  155 (591)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~g~~~~v~~Ll~~~~~~  155 (591)
                      ++||.||..|+.++|+.|++.                      +.+++.+|.+|.||||+|+..|+.+++++|++++.+ 
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~----------------------g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-   59 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE----------------------VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-   59 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST----------------------TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHcCCHHHHHHHHHc----------------------CCCccccccccccccccccccccccccccccccccc-
Confidence            567888888888888888875                      566777888888888888888888888888887644 


Q ss_pred             cCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHhc
Q 007741          156 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA--ATRGHTAVVNELLSK  220 (591)
Q Consensus       156 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~LL~~  220 (591)
                       .+..|.+|+||||+|+.+|+.+++++|+++|+++.......+.||++.+  +..|+.+++++|++.
T Consensus        60 -~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          60 -VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             -TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             -cccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence             4667778888888888888888888888888777544445567776554  466777777777754

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5e-20  Score=158.40  Aligned_cols=119  Identities=24%  Similarity=0.240  Sum_probs=50.5

Q ss_pred             HHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcceecCCCCCcHHHHHHHcCCHH
Q 007741          167 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD  246 (591)
Q Consensus       167 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~~~~g~tpLh~A~~~g~~~  246 (591)
                      +|+.|+..|+.++++.|+++|+++ +..|.+|+||||+|+..|+.+++++|++. +.+.+..|.+|+||||+|+..|+.+
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccccc-ccccccccccCcccccccchhhHHH
Confidence            344444444444444444444443 23333444444444444444444444433 2233334444444444444444444


Q ss_pred             HHHHHHhcCcccccccCCCCCcHHHHH--HhCCCHHHHHHHHH
Q 007741          247 VVKALLSKDPQLARRTDKKGQTALHMA--VKGQSCEVVKLLLE  287 (591)
Q Consensus       247 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~~v~~Ll~  287 (591)
                      ++++|+++|+++....+..|+|+++++  ++.|+.+++++|+.
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            444444444444222222344443333  23344444444444

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=5.4e-19  Score=156.10  Aligned_cols=131  Identities=21%  Similarity=0.209  Sum_probs=107.6

Q ss_pred             cHhHHHHHcCCHHHHHHHHcCCCcccccccCCCcchhHHHHhhcccccccCCCCCcHHHHHHHh---CcHHHHHHHHhcC
Q 007741           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADK---GHIEVVNELLKYS  152 (591)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~TpL~~Aa~~---g~~~~v~~Ll~~~  152 (591)
                      ..|+.|++.+++..+..++.......                ........+..|+||||+|++.   |+.++|++|+++|
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~----------------~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g   71 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLT----------------EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS   71 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTT----------------SBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcC----------------CCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC
Confidence            35678999999999999986532110                0222344577899999999985   6789999999987


Q ss_pred             CCccCccCCCCCChHHHHHHHhCcHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 007741          153 TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL  225 (591)
Q Consensus       153 ~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~  225 (591)
                      ++  ++.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++......
T Consensus        72 ad--in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          72 GN--LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             SC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             CC--hhhhhhhhccccccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            65  6778999999999999999999999999999998 6788999999999999999999999998754433

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=6e-19  Score=155.80  Aligned_cols=123  Identities=22%  Similarity=0.258  Sum_probs=89.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCccccc-----ccCCCCCcHHHHHHh---CCCHHHHHHHHHcCcccccCCCCCCCcHHHH
Q 007741          235 ALHFAARQGHVDVVKALLSKDPQLAR-----RTDKKGQTALHMAVK---GQSCEVVKLLLEADAAIVMLPDKFGNTALHV  306 (591)
Q Consensus       235 pLh~A~~~g~~~~v~~Ll~~~~~~~~-----~~d~~g~t~Lh~A~~---~~~~~~v~~Ll~~~~~~~~~~d~~g~T~Lh~  306 (591)
                      .|..|++.++...+..++..|.+...     ..+..|+||||+|++   .+..+++++|+++|++ ++.+|.+|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhcccccc
Confidence            34556677777777777766655421     225567788888875   3567788888887777 67778888888888


Q ss_pred             HHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCChhhHHHHHHHHhcCcc
Q 007741          307 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  363 (591)
Q Consensus       307 A~~~g~~~iv~~Ll~~~g~d~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~  363 (591)
                      |++.|+.+++++|+++ |+|++.+|..|+||||+|++.+    +.+++++|.+.++.
T Consensus        88 A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~----~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRG-KASIEIANESGETPLDIAKRLK----HEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT----CHHHHHHHHHHHTT
T ss_pred             cccccccccccccccc-CccccccCCCCCCHHHHHHHcC----CHHHHHHHHHhCCC
Confidence            8888888888888874 7888888888888888888777    77777777776654