Citrus Sinensis ID: 007816
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 588 | 2.2.26 [Sep-21-2011] | |||||||
| Q93VV5 | 591 | Probable peptide/nitrate | yes | no | 0.862 | 0.857 | 0.430 | 1e-116 | |
| Q8VYE4 | 567 | Probable peptide/nitrate | no | no | 0.853 | 0.885 | 0.416 | 1e-108 | |
| Q56XQ6 | 601 | Probable peptide/nitrate | no | no | 0.872 | 0.853 | 0.411 | 1e-106 | |
| Q8H157 | 585 | Nitrate transporter 1.2 O | no | no | 0.874 | 0.878 | 0.392 | 1e-106 | |
| Q9FM20 | 589 | Probable peptide/nitrate | no | no | 0.863 | 0.862 | 0.361 | 4e-95 | |
| Q9LYR6 | 624 | Probable peptide/nitrate | no | no | 0.891 | 0.839 | 0.372 | 2e-94 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.865 | 0.892 | 0.354 | 9e-94 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.863 | 0.891 | 0.344 | 2e-91 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.869 | 0.873 | 0.335 | 1e-88 | |
| Q05085 | 590 | Nitrate transporter 1.1 O | no | no | 0.897 | 0.894 | 0.34 | 9e-88 |
| >sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/523 (43%), Positives = 334/523 (63%), Gaps = 16/523 (3%)
Query: 16 ALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFAT 75
A E MG A G +++ Y NEMHF L+ A+N +TNF G+ F+ L+GG++SD FL F T
Sbjct: 56 AFEIMGIAAVGNNLITYVINEMHFPLSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWT 115
Query: 76 CLIFGTLEVLALVMLTIQAYSKNLHPPDCG---KSSC--LKGAIAAYFYGSLYLYSFGCG 130
+IFG +E+ ++L++QA+ L PP C +C KG A F+ +LYL + G G
Sbjct: 116 IIIFGFVELSGFILLSVQAHLPQLKPPKCNPLIDQTCEEAKGFKAMIFFMALYLVALGSG 175
Query: 131 GNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGF 190
+ + A GA QF ++ PK +K L+SYFN A ++ +I +T +V+V T +GF
Sbjct: 176 CVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGF 235
Query: 191 LVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYE-- 248
VS+ A +G+I+L +G +R ++P S +A V+V AI RKL+ P +P L+
Sbjct: 236 GVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPIAHVIVAAILKRKLASPSDPRMLHGDH 295
Query: 249 --INEKERASTWERIPHANQFRCLDKAAIMPKDSAVA-APWRVCTVTQVEEVKILTRMMP 305
N+ +ST +PH +FR LDKA I +D+ +PWR+CTVTQVE+VK L ++P
Sbjct: 296 HVANDVVPSST---LPHTPRFRFLDKACIKIQDTNTKESPWRLCTVTQVEQVKTLISLVP 352
Query: 306 ILASTILMNTCLAQLQTFSITQGAAMDPHL-GSIKVPTSSIPVIPLLFMSILLPLYEFFF 364
I ASTI+ NT LAQLQTFS+ QG++M+ L S +P +S+ IP + + L+PLY+ F
Sbjct: 353 IFASTIVFNTILAQLQTFSVQQGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFL 412
Query: 365 VPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSF 424
VPFARK+TGH SGI L R+GIGL LS SM A ++E RR++ + + +S+FW++
Sbjct: 413 VPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVSAAMLEKKRRDS-SVLDGRILSIFWITP 471
Query: 425 QYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKR 484
Q+ IFGI++MFT +GL+EFFYK++ GM++ + TY S SFG++ SS V ++N +T
Sbjct: 472 QFLIFGISEMFTAVGLIEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITST 531
Query: 485 ITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAW 527
SK GWL D+NK+ ++LFYW LA++S+LN + YL+ + W
Sbjct: 532 SVDSK-GWLGENDLNKDRLDLFYWLLAVLSLLNFLSYLFWSRW 573
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VYE4|PTR12_ARATH Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 221/530 (41%), Positives = 327/530 (61%), Gaps = 28/530 (5%)
Query: 17 LENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATC 76
LEN+ F+AN ++VLY KN MH LA +S+ +T F + FLL L+GGF++D F S F
Sbjct: 43 LENLAFLANASNLVLYLKNFMHMSLARSSSEVTTFMATAFLLALLGGFLADAFFSTFVIF 102
Query: 77 LIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLK-----GAIAAYFYGSLYLYSFGCGG 131
LI ++E L L++LTIQA +L PP C S+ L+ G+ AA+ + LYL S G GG
Sbjct: 103 LISASIEFLGLILLTIQARRPSLMPPPCKSSAALRCEVVGGSKAAFLFVGLYLVSLGIGG 162
Query: 132 NRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFL 191
+G+LP+ GA QFDE PKG K +++FN+Y+ + A++ VT +V++ K W GF
Sbjct: 163 IKGSLPSHGAEQFDEGTPKGRKQRSTFFNYYVFCLSCGALVAVTFVVWIEDNKGWEWGFG 222
Query: 192 VSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINE 251
VS+++ F+ ++ G Y+ + P SPL + +VL+ A +S + +
Sbjct: 223 VSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIFKVLLAA---SIVSCSSKTSSNHFTSR 279
Query: 252 KERASTWERIPH---ANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILA 308
+ ++ E+ P N CL+KA I K + W CTV QVE+VKI+ +M+PI
Sbjct: 280 EVQSEHEEKTPSQSLTNSLTCLNKA-IEGKTHHI---WLECTVQQVEDVKIVLKMLPIFG 335
Query: 309 STILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFA 368
TI++N CLAQL T+S+ Q A M+ + + VP++S+PV P++FM IL P Y+ +PFA
Sbjct: 336 CTIMLNCCLAQLSTYSVHQAATMNRKIVNFNVPSASLPVFPVVFMLILAPTYDHLIIPFA 395
Query: 369 RKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFN--------ETPPKQISLF 420
RK+T GIT LQR+G+GLVLS V+M VA LVE+ R+ ET P I+
Sbjct: 396 RKVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKRKQVAREAGLLDSEETLP--ITFL 453
Query: 421 WLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINA 480
W++ QY G AD+FT GLLEFF+ EAP+ M++LA+S ++ SL+ GY+LSS V I+N
Sbjct: 454 WIALQYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATSLSWASLALGYYLSSVMVPIVNR 513
Query: 481 VTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKY 530
VTK + + WL G+ +N+N ++LFYW + ++SV+N + YL+ A YKY
Sbjct: 514 VTK--SAGQSPWL-GEKLNRNRLDLFYWLMCVLSVVNFLHYLFWAKRYKY 560
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56XQ6|PTR15_ARATH Probable peptide/nitrate transporter At1g33440 OS=Arabidopsis thaliana GN=At1g33440 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust.
Identities = 217/527 (41%), Positives = 325/527 (61%), Gaps = 14/527 (2%)
Query: 14 FSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRF 73
F A E M A G +++ Y NEMHF L+ ++N +TNF G+ FLL L+GGF+SD++L F
Sbjct: 51 FQAFEMMAIAAVGNNLITYVFNEMHFPLSKSANLVTNFIGTVFLLSLLGGFLSDSYLGSF 110
Query: 74 ATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSS----CLK--GAIAAYFYGSLYLYSF 127
T L+FG +E+ ++L++QA+ L PP+C S C++ G AA Y +L L +
Sbjct: 111 RTMLVFGVIEISGFILLSVQAHLPELRPPECNMKSTTIHCVEANGYKAATLYTALCLVAL 170
Query: 128 GCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWW 187
G G + + + GA QF D + L+S+FN A ++ +I +T +V+V T
Sbjct: 171 GSGCLKPNIISHGANQFQRKD---LRKLSSFFNAAYFAFSMGQLIALTLLVWVQTHSGMD 227
Query: 188 LGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELY 247
+GF VS+ G+I+L AG YR + P S +AQV V AI RK P NP ++
Sbjct: 228 VGFGVSAAVMAAGMISLVAGTSFYRNKPPSGSIFTPIAQVFVAAITKRKQICPSNPNMVH 287
Query: 248 EINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPIL 307
+ + + H+N+FR LDKA I + A+ +PWR+CT+ QV +VKIL ++PI
Sbjct: 288 Q--PSTDLVRVKPLLHSNKFRFLDKACIKTQGKAMESPWRLCTIEQVHQVKILLSVIPIF 345
Query: 308 ASTILMNTCLAQLQTFSITQGAAMDPHL-GSIKVPTSSIPVIPLLFMSILLPLYEFFFVP 366
A TI+ NT LAQLQTFS+ QG++M+ H+ + ++P +S+ IP + + +PLYE FFVP
Sbjct: 346 ACTIIFNTILAQLQTFSVQQGSSMNTHITKTFQIPPASLQAIPYIILIFFVPLYETFFVP 405
Query: 367 FARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQY 426
ARK+TG+ SGI+ LQR+G GL L+ SM A LVE RR +F E +S+FW++ Q+
Sbjct: 406 LARKLTGNDSGISPLQRIGTGLFLATFSMVAAALVEKKRRESFLEQ-NVMLSIFWIAPQF 464
Query: 427 CIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRI- 485
IFG+++MFT +GL+EFFYK++ M++ ++ TY S SFG++LSS V +N VT
Sbjct: 465 LIFGLSEMFTAVGLVEFFYKQSSQSMQSFLTAMTYCSYSFGFYLSSVLVSTVNRVTSSNG 524
Query: 486 TPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKP 532
+ +K+GWL D+NK+ ++ FYW LA +S +N YL+ + WY P
Sbjct: 525 SGTKEGWLGDNDLNKDRLDHFYWLLASLSFINFFNYLFWSRWYSCDP 571
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8H157|PTR19_ARATH Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/555 (39%), Positives = 332/555 (59%), Gaps = 41/555 (7%)
Query: 9 FVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDT 68
FV VV LEN+ ++AN ++VLY + MH + ++N +TNF G+ FLL L+GGF+SD
Sbjct: 34 FVLVV-EILENLAYLANASNLVLYLREYMHMSPSKSANDVTNFMGTAFLLALLGGFLSDA 92
Query: 69 FLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSC--LKGAIAAYFYGSLYLYS 126
F S F LI ++E L L++LTIQA + +L PP C +C + G+ AA + LYL +
Sbjct: 93 FFSTFQIFLISASIEFLGLIILTIQARTPSLMPPSCDSPTCEEVSGSKAAMLFVGLYLVA 152
Query: 127 FGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSW 186
G GG +G+L + GA QFDE+ PKG K +++FN+++ A++ VT +V++ K W
Sbjct: 153 LGVGGIKGSLASHGAEQFDESTPKGRKQRSTFFNYFVFCLACGALVAVTFVVWLEDNKGW 212
Query: 187 WLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAI---------KNRKL 237
GF VS++A F+ ++ +G YR + P SPL + +VL+ A N
Sbjct: 213 EWGFGVSTIAIFVSILIFLSGSRFYRNKIPCGSPLTTILKVLLAASVKCCSSGSSSNAVA 272
Query: 238 SLPDNP---------EELYEINEKERASTWERIPH----ANQFRCLDKAAIMPKDSAVAA 284
S+ +P +E+ E E+ E +P N + L+ AA D
Sbjct: 273 SMSVSPSNHCVSKGKKEVESQGELEKPRQEEALPPRAQLTNSLKVLNGAA----DEKPVH 328
Query: 285 PWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSS 344
CTV QVE+VKI+ +M+PI A TI++N CLAQL TFS+ Q A+M+ +GS+K+P +S
Sbjct: 329 RLLECTVQQVEDVKIVLKMLPIFACTIMLNCCLAQLSTFSVQQAASMNTKIGSLKIPPAS 388
Query: 345 IPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVI 404
+P+ P++F+ IL P+Y+ +PFARK T +G+T LQR+G+GLVLS ++M VA LVE+
Sbjct: 389 LPIFPVVFIMILAPIYDHLIIPFARKATKTETGVTHLQRIGVGLVLSILAMAVAALVEIK 448
Query: 405 RRNAF--------NETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLA 456
R+ ET P ++ W++ QY G AD+FT GLLE+F+ EAP+ M++LA
Sbjct: 449 RKGVAKDSGLLDSKETLP--VTFLWIALQYLFLGSADLFTLAGLLEYFFTEAPSSMRSLA 506
Query: 457 SSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVL 516
+S ++ SL+ GY+LSS V I+N++T + WL GK IN+ ++ FYW + ++S
Sbjct: 507 TSLSWASLAMGYYLSSVIVSIVNSITG--SSGNTPWLRGKSINRYKLDYFYWLMCVLSAA 564
Query: 517 NLVLYLYAAAWYKYK 531
N + YL+ A YKY+
Sbjct: 565 NFLHYLFWAMRYKYR 579
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Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FM20|PTR54_ARATH Probable peptide/nitrate transporter At5g62730 OS=Arabidopsis thaliana GN=At5g62730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 349 bits (895), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 194/536 (36%), Positives = 306/536 (57%), Gaps = 28/536 (5%)
Query: 9 FVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDT 68
FV VV LEN+ F+AN ++VLY +M F +GA+N +T F G+ F L L+GGF++D
Sbjct: 65 FVLVV-EVLENLAFLANASNLVLYLSTKMGFSPSGAANAVTAFMGTAFFLALLGGFLADA 123
Query: 69 FLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFG 128
F + F L+ +E L L++LT+QA+ + P + + LYL + G
Sbjct: 124 FFTTFHIYLVSAAIEFLGLMVLTVQAHEHSTEPWS-----------RVFLFVGLYLVALG 172
Query: 129 CGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWL 188
GG +G+LP GA QFDE G + + +FN+++ + + A+I VT +V++ K W
Sbjct: 173 VGGIKGSLPPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVTVVVWLEDNKGWSY 232
Query: 189 GFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAI--KNRKLSLPDNPEEL 246
GF VS+ A I + AG +YR++ P SP+ + +VL A+ K +K
Sbjct: 233 GFGVSTAAILISVPVFLAGSRVYRLKVPSGSPITTLFKVLTAALYAKYKKRRTSRIVVTC 292
Query: 247 YEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPI 306
+ N+ + + T + + F ++ + ++ P R CT QV++VKI+ +++PI
Sbjct: 293 HTRNDCDDSVTKQNCDGDDGFLGSFLGEVVRERESLPRPLR-CTEEQVKDVKIVIKILPI 351
Query: 307 LASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVP 366
STI++N CLAQL TFS+ Q + M+ LGS VP +++PV P++FM IL P Y +P
Sbjct: 352 FMSTIMLNCCLAQLSTFSVQQASTMNTKLGSFTVPPAALPVFPVVFMMILAPTYNHLLLP 411
Query: 367 FARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRN-----------AFNETPPK 415
ARK T +GIT LQR+G GLVLS V+M VA LVE R++ + + P
Sbjct: 412 LARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVETKRKHVVVSCCSNNNSSSYSSSPL 471
Query: 416 QISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFV 475
I+ W++ QY G AD+FT G++EFF+ EAP+ M++LA+S ++ SL+ GY+ SS V
Sbjct: 472 PITFLWVAIQYVFLGSADLFTLAGMMEFFFTEAPSTMRSLATSLSWASLAMGYYFSSVLV 531
Query: 476 DIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYK 531
+N VT WL G+++N+ ++ FYW + ++S +N + YL+ A+ Y Y+
Sbjct: 532 SAVNFVTG--LNHHNPWLLGENLNQYHLERFYWLMCVLSGINFLHYLFWASRYVYR 585
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (889), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 204/547 (37%), Positives = 305/547 (55%), Gaps = 23/547 (4%)
Query: 18 ENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCL 77
E M + ++MV + MH +SN + NF G + ++GGF++D +L R+ T
Sbjct: 81 ERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140
Query: 78 IFGTLEVLALVMLTIQAYSKNLHP--PDCGKSSCLKGAIAA-------YFYGSLYLYSFG 128
IF T+ ++ L+ +T+ A K P +CG+ S L G Y Y LY+ FG
Sbjct: 141 IFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCEEAKSWQMLYLYTVLYITGFG 200
Query: 129 CGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWL 188
G R + +FGA QFDE L +FNF+ L+ T+ A+I T +VYV E W +
Sbjct: 201 AAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELGWGM 260
Query: 189 GFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNP-EELY 247
F +VA I AG LYR + PG SPL RVAQVLV A + R + + LY
Sbjct: 261 AFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFIGLY 320
Query: 248 EINEKERASTWER-IPHANQFRCLDKAAI-MPKDSAVAAPWRVCTVTQVEEVKILTRMMP 305
E+ + A R IPH+N F LDKAA+ + +D +PW++CTVTQVEEVKIL R++P
Sbjct: 321 EVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSPWKLCTVTQVEEVKILIRLIP 380
Query: 306 ILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFV 365
I TI+++ L + T S+ Q ++ H+ +K+P + +PV P L + ++L LY FV
Sbjct: 381 IPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYSVFV 440
Query: 366 PFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRN-------AFN-ETPPKQI 417
P R+ITG+P G +QLQRVGIGL +S +S+ AGL E RR+ FN T +
Sbjct: 441 PITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYRRHYAIQNGFEFNFLTQMPDL 500
Query: 418 SLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDI 477
+ +WL QYC+ GIA++F +GLLEF Y+EAP MK++ S++ L+ G F ++ +I
Sbjct: 501 TAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATILNNI 560
Query: 478 INAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENCSD 537
+ A T+ + WL ++IN + YW L ++S LN ++L++A YKY+ +
Sbjct: 561 VKAATR--DSDGKSWL-SQNINTGRFDCLYWLLTLLSFLNFCVFLWSAHRYKYRAIESEE 617
Query: 538 IKPKPLM 544
K ++
Sbjct: 618 DKSSAVL 624
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 344 bits (883), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 187/527 (35%), Positives = 309/527 (58%), Gaps = 18/527 (3%)
Query: 18 ENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCL 77
E + + +++ Y + +M+ + AS +++N+ G+ + L+G FI+D +L R+ T
Sbjct: 42 ERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIA 101
Query: 78 IFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLP 137
F + + + +LTI A L P G++ A + +LYL + G GG + +
Sbjct: 102 SFVVIYIAGMTLLTISASVPGLTPTCSGETCHATAGQTAITFIALYLIALGTGGIKPCVS 161
Query: 138 AFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVAN 197
+FGA QFD+ D K ++ +S+FN++ V A+I + +V++ W G V +VA
Sbjct: 162 SFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAM 221
Query: 198 FIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERAST 257
I ++ AG YR+Q+PG SPL R+ QV+V + + K+ +P++ LYE + E +
Sbjct: 222 AIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSII 281
Query: 258 WER-IPHANQFRCLDKAAIMP----KDSAVAAPWRVCTVTQVEEVKILTRMMPILASTIL 312
R + H DKAA+ K +A ++ W++CTVTQVEE+K L R++PI A+ I+
Sbjct: 282 GSRKLEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIV 341
Query: 313 MNTCLAQLQTFSITQGAAMDPHLG-SIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKI 371
+ +Q+ T + QG +D H+G + K+P++S+ + L + P+Y+ VPFARK
Sbjct: 342 FASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKY 401
Query: 372 TGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIR------RNAFN-ETPPKQISLFWLSF 424
TGH G TQLQR+GIGLV+S SM AG++EV R N +N ET P +++FW
Sbjct: 402 TGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIP--MTIFWQVP 459
Query: 425 QYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKR 484
QY + G A++FTFIG LEFFY +AP M++L S+ + +++FG +LS+ V ++ VT+
Sbjct: 460 QYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTR- 518
Query: 485 ITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYK 531
+ + GW+ K++N +++ F+W LA +S LN ++YL+ A WY YK
Sbjct: 519 -SGGRPGWI-AKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYK 563
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 182/529 (34%), Positives = 310/529 (58%), Gaps = 21/529 (3%)
Query: 18 ENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCL 77
E + + G ++V Y ++ ++ A A+N +TN+ G+ ++ L+G FI+D +L R+ T
Sbjct: 41 ERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIA 100
Query: 78 IFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCL-KGAIAAYFYGSLYLYSFGCGGNRGTL 136
F + V + +LT+ A L P +C +C + A F+ +LY+ + G GG + +
Sbjct: 101 TFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCV 160
Query: 137 PAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVA 196
+FGA QFDEND +S+FN++ + V A+I T +V++ W GF V +VA
Sbjct: 161 SSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVA 220
Query: 197 NFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERAS 256
I + G YR+Q+PG SPL R+ QV+V A + + +P++ L+E + E
Sbjct: 221 MVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNI 280
Query: 257 TWER-IPHANQFRCLDKAAIMPKDSAV----AAPWRVCTVTQVEEVKILTRMMPILASTI 311
R + H + + DKAA+ + ++ PWR+C+VTQVEE+K + ++P+ A+ I
Sbjct: 281 KGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGI 340
Query: 312 LMNTCLAQLQTFSITQGAAMDPHLG-SIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARK 370
+ T +Q+ T + QG MD H+G + ++P++S+ + + + P+Y+ F +P ARK
Sbjct: 341 VFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARK 400
Query: 371 ITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIR------RNAFNETPPKQI--SLFWL 422
T + G TQLQR+GIGLV+S +M AG++EV+R NA+++ KQI S+FW
Sbjct: 401 FTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQ---KQIHMSIFWQ 457
Query: 423 SFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVT 482
QY + G A++FTFIG LEFFY +AP M++L S+ + +++ G +LS+ V ++ +T
Sbjct: 458 IPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKIT 517
Query: 483 KRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYK 531
K+ K GW+ ++N+ +++ F++ LA +S LN ++YL+ + YKYK
Sbjct: 518 KK--NGKPGWIP-DNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYK 563
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 327 bits (839), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 177/527 (33%), Positives = 298/527 (56%), Gaps = 16/527 (3%)
Query: 18 ENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCL 77
E + + +++ Y ++H A+ +T + G+ +L L+G ++D + R+ T
Sbjct: 58 ERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIA 117
Query: 78 IFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAY--FYGSLYLYSFGCGGNRGT 135
F + + + LT+ A L P +C C A Y F+G LYL + G GG +
Sbjct: 118 CFSGIYFIGMSALTLSASVPALKPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPC 177
Query: 136 LPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSV 195
+ +FGA QFD+ D + AS+FN++ + + A++ + +V++ + W LGF + +V
Sbjct: 178 VSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTV 237
Query: 196 ANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERA 255
+ + + G LYR Q+PG SP+ R++QV+V + + + +P++ LYE +K A
Sbjct: 238 FMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSA 297
Query: 256 STWER-IPHANQFRCLDKAAIMPKDSAVAA----PWRVCTVTQVEEVKILTRMMPILAST 310
R I H + + LDKAA++ ++ + + WR+CTVTQVEE+KIL RM PI AS
Sbjct: 298 IAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASG 357
Query: 311 ILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARK 370
I+ + AQ+ T + QG AM+ +GS ++P +++ + I +PLY+ F VP ARK
Sbjct: 358 IIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARK 417
Query: 371 ITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNE------TPPKQISLFWLSF 424
TG G T++QR+GIGL +S + M A +VE+IR + N+ P IS+ W
Sbjct: 418 FTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIP 477
Query: 425 QYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKR 484
QY I G A++F FIG LEFFY ++P M++L S+ L+ + G +LSS + ++ T R
Sbjct: 478 QYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTR 537
Query: 485 ITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYK 531
++GW+ ++N +++ F+W LA +S++N+ +Y ++AA YK K
Sbjct: 538 --NGQEGWIS-DNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQK 581
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q05085|PTR7_ARATH Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (832), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 187/550 (34%), Positives = 304/550 (55%), Gaps = 22/550 (4%)
Query: 15 SALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFA 74
A+E + + G+++V Y MH A A+NT+TNF G++F+LCL+GGFI+DTFL R+
Sbjct: 41 EAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYL 100
Query: 75 TCLIFGTLEVLALVMLTIQAYSKNLHPPDCG---KSSCLK--GAIAAYFYGSLYLYSFGC 129
T IF ++ + +LT+ L PP C S C + G Y +LYL + G
Sbjct: 101 TIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGT 160
Query: 130 GGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLG 189
GG + ++ FG+ QFDE +PK + +FN + V +++ VT +VYV + G
Sbjct: 161 GGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWG 220
Query: 190 FLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEI 249
+ + + A + L AG YR ++ SP+ +VA V+V A +NRKL LP +P LY++
Sbjct: 221 YGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWRNRKLELPADPSYLYDV 280
Query: 250 NE----KERASTWERIPHANQFRCLDKAAIMPKDSAVAA----PWRVCTVTQVEEVKILT 301
++ + +++PH QFR LDKAAI +++ V + W + T+T VEEVK +
Sbjct: 281 DDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRDQEAGVTSNVFNKWTLSTLTDVEEVKQIV 340
Query: 302 RMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYE 361
RM+PI A+ IL T AQL T S+ Q +D +GS ++P +S+ V + + + +Y+
Sbjct: 341 RMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIGSFEIPPASMAVFYVGGLLLTTAVYD 400
Query: 362 FFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIR-RNAFNETPPKQ---I 417
+ +K+ +P G+ LQR+G+GL +++M VA LVE+ R R A P + +
Sbjct: 401 RVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVELKRLRTAHAHGPTVKTLPL 460
Query: 418 SLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDI 477
+ L QY I GI + + G L+FF +E P GMK +++ +L+ G+F SS V I
Sbjct: 461 GFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTI 520
Query: 478 INAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENCSD 537
+ T + P W+ D+NK + FYW +A++ LN +++L + WY YK + ++
Sbjct: 521 VEKFTGKAHP----WI-ADDLNKGRLYNFYWLVAVLVALNFLIFLVFSKWYVYKEKRLAE 575
Query: 538 IKPKPLMDPS 547
+ + +PS
Sbjct: 576 VGIELDDEPS 585
|
Dual affinity nitrate transporter. Involved in proton-dependent nitrate uptake and in the regulation of the nitrate transporter NRT2.1. Acts also as a nitrate sensor that trigger a specific signaling pathway stimulating lateral root growth and seed germination. The uptake activity is not required for sensor function. Displays an auxin transport facilitation inhibited by high nitrate concentration. Required to prevent auxin accumulation in preemerged lateral root primordia and young lateral roots when external nitrate concentration is low or null. May be involved in the basipetal transport of auxin out of the lateral root tips. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 588 | ||||||
| 225450417 | 736 | PREDICTED: probable peptide/nitrate tran | 0.967 | 0.773 | 0.643 | 0.0 | |
| 296089862 | 626 | unnamed protein product [Vitis vinifera] | 0.965 | 0.907 | 0.645 | 0.0 | |
| 357441977 | 606 | Peptide transporter PTR1 [Medicago trunc | 0.965 | 0.937 | 0.618 | 0.0 | |
| 356574054 | 618 | PREDICTED: probable peptide/nitrate tran | 0.967 | 0.920 | 0.619 | 0.0 | |
| 356505723 | 582 | PREDICTED: nitrate transporter 1.2-like | 0.928 | 0.938 | 0.642 | 0.0 | |
| 356534943 | 604 | PREDICTED: probable peptide/nitrate tran | 0.967 | 0.942 | 0.616 | 0.0 | |
| 357511669 | 585 | Peptide transporter PTR1 [Medicago trunc | 0.911 | 0.916 | 0.642 | 0.0 | |
| 255543056 | 640 | nitrate transporter, putative [Ricinus c | 0.945 | 0.868 | 0.609 | 0.0 | |
| 224124288 | 623 | predicted protein [Populus trichocarpa] | 0.965 | 0.911 | 0.605 | 0.0 | |
| 449454111 | 662 | PREDICTED: probable peptide/nitrate tran | 0.875 | 0.777 | 0.636 | 0.0 |
| >gi|225450417|ref|XP_002276071.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/573 (64%), Positives = 449/573 (78%), Gaps = 4/573 (0%)
Query: 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFI 65
+ F+Y++ ++LENMGF+AN +S+ YF MHFDL+GA+NTLTNF G+TFLL LVGGF+
Sbjct: 145 ASMFIYIL-TSLENMGFVANMVSLFSYFYGLMHFDLSGAANTLTNFMGATFLLSLVGGFV 203
Query: 66 SDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLY 125
SDT LSR TCLIFGT+E+L L+++TIQAYS LHP DCGK SC++G A FY SL LY
Sbjct: 204 SDTLLSRLNTCLIFGTIELLGLMLMTIQAYSNKLHPADCGKPSCVEGGTAVMFYVSLCLY 263
Query: 126 SFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKS 185
+ G GG RG LPA GA QF++ DP A+ALAS+FN+ +L+ TV A +GVT IV+V + +
Sbjct: 264 ALGSGGVRGALPALGADQFNQKDPNEAEALASFFNWVILSATVGASVGVTVIVWVSSTVT 323
Query: 186 WWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEE 245
W+ GF +S V FIG I LA G+ YRIQ G+SP++R QV+VVAIKNR LS P++P E
Sbjct: 324 WYWGFFISLVTAFIGFIVLALGRRFYRIQPHGQSPIIRTVQVIVVAIKNRSLSPPESPGE 383
Query: 246 LYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMP 305
LYEIN++ T ++ H +QFRCLDKAAI+ KDS PW VCTVTQVEEVKILTRM+P
Sbjct: 384 LYEINDQVTDFTDPKLAHTDQFRCLDKAAILGKDSE-PRPWEVCTVTQVEEVKILTRMLP 442
Query: 306 ILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFV 365
IL STI+MNTCLAQLQTFS+ QG MD LGS +VP SSIP+IPL+FMSIL+P+YEF FV
Sbjct: 443 ILFSTIIMNTCLAQLQTFSVHQGNEMDRFLGSFEVPASSIPIIPLVFMSILIPIYEFVFV 502
Query: 366 PFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQ 425
PFARKITGHP+GITQLQRVGIGLVLSA+SM VAGLVEV RRN E PP++ISLFWLSFQ
Sbjct: 503 PFARKITGHPAGITQLQRVGIGLVLSAISMAVAGLVEVKRRNEALEIPPRKISLFWLSFQ 562
Query: 426 YCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRI 485
Y IFGIADMFT +GLLEFFYKEAP GM++L++SFT++SLSFGYFLS+ FVDIIN+VTKRI
Sbjct: 563 YGIFGIADMFTLVGLLEFFYKEAPKGMRSLSTSFTWVSLSFGYFLSTIFVDIINSVTKRI 622
Query: 486 TPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENCSD--IKPKPL 543
PSKQGWLHG INKNN+NLFY+FLAI+S +N V YLY A+WYKYK E+ D +K K L
Sbjct: 623 APSKQGWLHGSYINKNNLNLFYYFLAILSCINFVNYLYWASWYKYKAEDRPDTELKLKAL 682
Query: 544 MDPSAKEEKIDQDDGKAKQYGAASSDDGIIGKE 576
P ++ QD+ A GAAS++ KE
Sbjct: 683 SAPPVFRKESTQDNIGAITNGAASAEHTEDAKE 715
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089862|emb|CBI39681.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/572 (64%), Positives = 449/572 (78%), Gaps = 4/572 (0%)
Query: 7 NFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFIS 66
+ F+Y++ ++LENMGF+AN +S+ YF MHFDL+GA+NTLTNF G+TFLL LVGGF+S
Sbjct: 36 SMFIYIL-TSLENMGFVANMVSLFSYFYGLMHFDLSGAANTLTNFMGATFLLSLVGGFVS 94
Query: 67 DTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYS 126
DT LSR TCLIFGT+E+L L+++TIQAYS LHP DCGK SC++G A FY SL LY+
Sbjct: 95 DTLLSRLNTCLIFGTIELLGLMLMTIQAYSNKLHPADCGKPSCVEGGTAVMFYVSLCLYA 154
Query: 127 FGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSW 186
G GG RG LPA GA QF++ DP A+ALAS+FN+ +L+ TV A +GVT IV+V + +W
Sbjct: 155 LGSGGVRGALPALGADQFNQKDPNEAEALASFFNWVILSATVGASVGVTVIVWVSSTVTW 214
Query: 187 WLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEEL 246
+ GF +S V FIG I LA G+ YRIQ G+SP++R QV+VVAIKNR LS P++P EL
Sbjct: 215 YWGFFISLVTAFIGFIVLALGRRFYRIQPHGQSPIIRTVQVIVVAIKNRSLSPPESPGEL 274
Query: 247 YEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPI 306
YEIN++ T ++ H +QFRCLDKAAI+ KDS PW VCTVTQVEEVKILTRM+PI
Sbjct: 275 YEINDQVTDFTDPKLAHTDQFRCLDKAAILGKDSE-PRPWEVCTVTQVEEVKILTRMLPI 333
Query: 307 LASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVP 366
L STI+MNTCLAQLQTFS+ QG MD LGS +VP SSIP+IPL+FMSIL+P+YEF FVP
Sbjct: 334 LFSTIIMNTCLAQLQTFSVHQGNEMDRFLGSFEVPASSIPIIPLVFMSILIPIYEFVFVP 393
Query: 367 FARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQY 426
FARKITGHP+GITQLQRVGIGLVLSA+SM VAGLVEV RRN E PP++ISLFWLSFQY
Sbjct: 394 FARKITGHPAGITQLQRVGIGLVLSAISMAVAGLVEVKRRNEALEIPPRKISLFWLSFQY 453
Query: 427 CIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRIT 486
IFGIADMFT +GLLEFFYKEAP GM++L++SFT++SLSFGYFLS+ FVDIIN+VTKRI
Sbjct: 454 GIFGIADMFTLVGLLEFFYKEAPKGMRSLSTSFTWVSLSFGYFLSTIFVDIINSVTKRIA 513
Query: 487 PSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENCSD--IKPKPLM 544
PSKQGWLHG INKNN+NLFY+FLAI+S +N V YLY A+WYKYK E+ D +K K L
Sbjct: 514 PSKQGWLHGSYINKNNLNLFYYFLAILSCINFVNYLYWASWYKYKAEDRPDTELKLKALS 573
Query: 545 DPSAKEEKIDQDDGKAKQYGAASSDDGIIGKE 576
P ++ QD+ A GAAS++ KE
Sbjct: 574 APPVFRKESTQDNIGAITNGAASAEHTEDAKE 605
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441977|ref|XP_003591266.1| Peptide transporter PTR1 [Medicago truncatula] gi|355480314|gb|AES61517.1| Peptide transporter PTR1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/584 (61%), Positives = 454/584 (77%), Gaps = 16/584 (2%)
Query: 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFI 65
+ F++V+ SAL+NMGF+ N +S+VLYF MHFDL+ ++NTLTNF GSTFLL LVG FI
Sbjct: 25 ASMFIFVL-SALDNMGFVTNMVSLVLYFIGVMHFDLSSSANTLTNFMGSTFLLSLVGAFI 83
Query: 66 SDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLY 125
SDT+L+RF TCL+FG+LEV+ALVM+T+QA NLHP CGKSSC++G IA FY SL LY
Sbjct: 84 SDTYLNRFTTCLVFGSLEVMALVMITVQAALDNLHPKACGKSSCVEGGIAVMFYTSLCLY 143
Query: 126 SFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKS 185
+ G GG RG+L AFGA QFDE DP AKALA++FN+ LL++T+ +VIGVTGIV+V T+K+
Sbjct: 144 ALGMGGVRGSLTAFGANQFDEKDPNEAKALATFFNWLLLSSTLGSVIGVTGIVWVSTQKA 203
Query: 186 WWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEE 245
W GF + +VA+ IG + LA GK YRI+ PGESP++R+ QV+VVA KNRKL LP++ E+
Sbjct: 204 WHWGFFIITVASSIGFVTLAIGKPFYRIKTPGESPILRIIQVIVVAFKNRKLQLPESNEQ 263
Query: 246 LYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMP 305
LYE+ + +T E+I H NQ R LDKAAI+ ++S PW+VCTVTQVEEVKILTRM+P
Sbjct: 264 LYEV---YKDATIEKIVHTNQMRFLDKAAILQENSESQQPWKVCTVTQVEEVKILTRMLP 320
Query: 306 ILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFV 365
ILASTI+MNTCLAQLQTFS+ QG +M+ LGS VP SSIPVIPL+F+ L+P+YE FFV
Sbjct: 321 ILASTIVMNTCLAQLQTFSVQQGNSMNLKLGSFTVPASSIPVIPLIFLCTLIPIYELFFV 380
Query: 366 PFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQ 425
PF RKIT HPSG+TQLQRVG+GLVLSA+SMT+AG +EV RR+ + P K ISLFWLSFQ
Sbjct: 381 PFIRKITHHPSGVTQLQRVGVGLVLSAISMTIAGFIEVKRRDQGRKDPSKPISLFWLSFQ 440
Query: 426 YCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRI 485
Y IFGIADMFT +GLLEFFY+EAP+ MK+L++SFT+LS+S GYFLS+ FV++IN VTKRI
Sbjct: 441 YAIFGIADMFTLVGLLEFFYREAPSTMKSLSTSFTFLSMSLGYFLSTVFVNVINTVTKRI 500
Query: 486 TPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPE----NCSDIKPK 541
TPSKQGWL G D+N+NN+NLFYWFLAI+S LN +LY A+WYKYK E N ++
Sbjct: 501 TPSKQGWLQGFDLNQNNLNLFYWFLAILSCLNFFNFLYWASWYKYKSEEDSNNSKELGET 560
Query: 542 PLM-------DPSAKEEKIDQDDGKAKQYGAASSDDGIIGKEKE 578
L+ D AK ++ Q +A G +SSD+ GKEKE
Sbjct: 561 HLLMVGGRKHDDKAKAKESSQTS-EANTEGPSSSDETDDGKEKE 603
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574054|ref|XP_003555167.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/592 (61%), Positives = 463/592 (78%), Gaps = 23/592 (3%)
Query: 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFI 65
+ F++V+ SAL+NMGF+AN +S+VLYF MHFDL+ ++NTLTNF GSTFLL LVGGFI
Sbjct: 33 ASMFIFVL-SALDNMGFVANMVSLVLYFYGVMHFDLSNSANTLTNFMGSTFLLSLVGGFI 91
Query: 66 SDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLY 125
SDT+ +R TCL+FG+LEVLALVMLT+QA +LHP CGKSSC+KG IA FY SLYL
Sbjct: 92 SDTYFNRLTTCLLFGSLEVLALVMLTVQAALDHLHPDFCGKSSCVKGGIAVMFYSSLYLL 151
Query: 126 SFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKS 185
+ G GG RG+L AFGA QF E +P+ AKALASYFN+ LL++T+ ++IGVTG+V+V T+K+
Sbjct: 152 ALGMGGVRGSLTAFGADQFGEKNPQEAKALASYFNWLLLSSTLGSIIGVTGVVWVSTQKA 211
Query: 186 WWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEE 245
W GF++ +VA+ IG + LA GK YRI+ PG+SP+ R+AQV+VVA KNRKL LP++ EE
Sbjct: 212 WHWGFIIITVASSIGFLTLALGKPFYRIKTPGQSPISRIAQVIVVAFKNRKLPLPESNEE 271
Query: 246 LYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMP 305
LYE+ E+ +T E+I H NQ R LD+A+I+ +++ + PW+VCTVTQVEEVKILTRM+P
Sbjct: 272 LYEVYEE---ATLEKIAHTNQMRFLDRASIL-QENIESRPWKVCTVTQVEEVKILTRMLP 327
Query: 306 ILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFV 365
ILASTI+MNTCLAQLQTFS+ QG M+ LGS VP SIPVIPLLFMSIL+PLYEFFFV
Sbjct: 328 ILASTIIMNTCLAQLQTFSVQQGNVMNLKLGSFTVPAPSIPVIPLLFMSILIPLYEFFFV 387
Query: 366 PFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQ 425
PFARKIT HPSG+TQLQRVG+GLVLS++SMT+AG++EV RR+ + P + ISLFWLSFQ
Sbjct: 388 PFARKITHHPSGVTQLQRVGVGLVLSSISMTIAGIIEVKRRDQGRKDPSRPISLFWLSFQ 447
Query: 426 YCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRI 485
Y IFGIADMFT +GLLEFFY+EAP MK+L++SFTYLS+S GYFLS+ FVD+INAVTKR+
Sbjct: 448 YAIFGIADMFTLVGLLEFFYREAPVTMKSLSTSFTYLSMSLGYFLSTIFVDVINAVTKRV 507
Query: 486 TPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPE-NCSDIKPKPLM 544
TPSKQGWLHG D+N+NN+NLFYWFLAI+S LN +LY A+WYKYK E N S + K L
Sbjct: 508 TPSKQGWLHGLDLNQNNLNLFYWFLAILSCLNFFNFLYWASWYKYKAEDNNSKVNLKALR 567
Query: 545 DPSAKEEKIDQDDGK--------------AKQYGAASSDDGIIGKE-KEFIH 581
+ E K D+++ K A G +SSD+ G+ +E+ H
Sbjct: 568 --TTGERKQDEEEKKDMRVKAKESSQTSEANTEGPSSSDETDDGRNSREWKH 617
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505723|ref|XP_003521639.1| PREDICTED: nitrate transporter 1.2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/551 (64%), Positives = 442/551 (80%), Gaps = 5/551 (0%)
Query: 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFI 65
+ F++V+ SAL+NMGF+AN +S+VLYF MHFDLA ++NTLTNF GST+LL LVGGFI
Sbjct: 31 ASMFIFVL-SALDNMGFVANMVSIVLYFYGVMHFDLASSANTLTNFMGSTYLLSLVGGFI 89
Query: 66 SDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLY 125
SDT+L+RF TCL+FG+LEVLAL MLT+QA SK+LHP CGKSSC+KG IA FY SL L
Sbjct: 90 SDTYLNRFTTCLLFGSLEVLALAMLTVQAASKHLHPEACGKSSCVKGGIAVMFYTSLCLL 149
Query: 126 SFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKS 185
+ G GG RG++ AFGA QFDE DP AKALAS+FN+ LL++TV A+ GVTG+V+V T+K+
Sbjct: 150 ALGMGGVRGSMTAFGADQFDEKDPTEAKALASFFNWLLLSSTVGAITGVTGVVWVSTQKA 209
Query: 186 WWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEE 245
W GF + ++A+ +G + LA GK YRI+ PG+SP +R+AQV+VV+ KNRKLSLP++ E
Sbjct: 210 WHWGFFIITIASSVGFVTLALGKQFYRIKTPGDSPTLRIAQVIVVSFKNRKLSLPESHGE 269
Query: 246 LYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMP 305
LYEI++K+ +T E+I H NQ R LDKAAI+ + S A W++CTVTQVEEVKILTRM+P
Sbjct: 270 LYEISDKD--ATAEKIAHTNQMRFLDKAAIIQESSKPQA-WKICTVTQVEEVKILTRMLP 326
Query: 306 ILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFV 365
I+ASTI++NTC+AQLQTFS+ QG MD LGS+ VP SIPVIPL+F+S+L+PLYE FFV
Sbjct: 327 IVASTIILNTCMAQLQTFSVQQGNVMDLKLGSLTVPAPSIPVIPLVFISVLVPLYELFFV 386
Query: 366 PFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQ 425
PFARKIT HPSGITQLQRVG+GLVLSA+SM VAG+VEV RR+ + P K ISLFWLSFQ
Sbjct: 387 PFARKITNHPSGITQLQRVGVGLVLSAISMAVAGIVEVKRRDQGRKDPSKPISLFWLSFQ 446
Query: 426 YCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRI 485
Y IFGIADMFT +GLLEFFY+E+PA MK+L++S T+LS S GYFLS+ FV++INAVTKRI
Sbjct: 447 YGIFGIADMFTLVGLLEFFYRESPASMKSLSTSLTWLSTSLGYFLSTVFVNVINAVTKRI 506
Query: 486 TPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENCSDIKPKPLMD 545
T SKQGWLHG D+N+NN+NLFYWFLA +S LN YLY A+ Y+YK E+ S KPL +
Sbjct: 507 TRSKQGWLHGFDLNQNNLNLFYWFLATLSCLNFFNYLYWASRYQYKRED-SGPGFKPLGE 565
Query: 546 PSAKEEKIDQD 556
K + QD
Sbjct: 566 MPLKRVERKQD 576
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534943|ref|XP_003536010.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/594 (61%), Positives = 464/594 (78%), Gaps = 25/594 (4%)
Query: 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFI 65
+ F++V+ SAL+NMGF+AN +S+VLYF MHFDL+ ++NTLTNF GSTFLL LVGGFI
Sbjct: 17 ASMFIFVL-SALDNMGFVANMVSLVLYFYGVMHFDLSNSANTLTNFMGSTFLLSLVGGFI 75
Query: 66 SDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLY 125
SDT+ +R TCL+FG+LEVLALVMLT+QA +LHP CGKSSC+KG IA FY SLYL
Sbjct: 76 SDTYFNRLTTCLLFGSLEVLALVMLTVQAGLDHLHPDYCGKSSCVKGGIAVMFYSSLYLL 135
Query: 126 SFGCGGNRGTLPAFGAGQFDEN-DPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEK 184
+ G GG RG+L AFGA QFDE +P AKALAS+FN+ LL++T+ ++IGVTG+V+V T+K
Sbjct: 136 ALGMGGVRGSLTAFGADQFDEKKNPGEAKALASFFNWILLSSTLGSIIGVTGVVWVSTQK 195
Query: 185 SWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPE 244
+W GF++ ++A+ IG + LA GK YRI+ PG+SP++R+AQV+VVA KNRKL LP++ E
Sbjct: 196 AWHWGFIIITIASSIGFLTLALGKPFYRIKTPGQSPILRIAQVIVVAFKNRKLPLPESDE 255
Query: 245 ELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMM 304
ELYE+ E +T E+I H NQ R LD+A+I+ +++ + W+VCTVTQVEEVKILTRM+
Sbjct: 256 ELYEVYED---ATLEKIAHTNQMRFLDRASIL-QENIESQQWKVCTVTQVEEVKILTRML 311
Query: 305 PILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFF 364
PILASTI+MNTCLAQLQTFS+ QG+ M+ LGS VP SIPVIPLLFMSIL+PLYEFFF
Sbjct: 312 PILASTIIMNTCLAQLQTFSVQQGSVMNLKLGSFTVPAPSIPVIPLLFMSILIPLYEFFF 371
Query: 365 VPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSF 424
VPFARKIT HPSG+TQLQRVG+GLVLSA+SMT+AG++EV RR+ + P + ISLFWLSF
Sbjct: 372 VPFARKITHHPSGVTQLQRVGVGLVLSAISMTIAGIIEVKRRDQGRKDPSRPISLFWLSF 431
Query: 425 QYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKR 484
QY IFG+ADMFT +GLLEFFY+EAP MK+L++SFTYLS+S GYFLS+ FVD+INAVTKR
Sbjct: 432 QYAIFGVADMFTLVGLLEFFYREAPETMKSLSTSFTYLSMSLGYFLSTVFVDVINAVTKR 491
Query: 485 ITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPE-NCSDIKPK-P 542
+TPSKQGWLHG D+N+NN+NLFYWFLAI+S LN +LY A+WYKYK E N S + K P
Sbjct: 492 VTPSKQGWLHGLDLNQNNLNLFYWFLAILSCLNFFNFLYWASWYKYKVEDNNSKVNLKAP 551
Query: 543 LMDPSAKEEKIDQDDGK--------------AKQYGAASSDDGIIGKE-KEFIH 581
L + E K D+++ K A G +SSD+ G+ +E+ H
Sbjct: 552 L--KTVGERKQDEEEKKDMRVKARESSQTSEANTEGPSSSDETDDGRNSREWKH 603
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511669|ref|XP_003626123.1| Peptide transporter PTR1 [Medicago truncatula] gi|87241322|gb|ABD33180.1| TGF-beta receptor, type I/II extracellular region [Medicago truncatula] gi|355501138|gb|AES82341.1| Peptide transporter PTR1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/542 (64%), Positives = 434/542 (80%), Gaps = 6/542 (1%)
Query: 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFI 65
+ F++V+ SAL+NMGF+AN +S+VLYF MHFD+ ++NTLTNF GSTFLL LVGGFI
Sbjct: 25 ASMFIFVL-SALDNMGFVANMVSLVLYFYGVMHFDIPSSANTLTNFMGSTFLLSLVGGFI 83
Query: 66 SDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLY 125
SDT+L+RF TCL+FG+LEVLAL ++T QA S +LHP CGKSSC+KG I FY SL L
Sbjct: 84 SDTYLNRFTTCLLFGSLEVLALALVTFQAASDHLHPNACGKSSCVKGGIEFMFYTSLSLL 143
Query: 126 SFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKS 185
+ G GG RG++ AFGA QF+E D AKALAS+FN+ LL++T+ A+ GVTG+V+V T+++
Sbjct: 144 ALGIGGVRGSMTAFGADQFEEKDSNEAKALASFFNWLLLSSTLGAITGVTGVVWVSTQRA 203
Query: 186 WWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEE 245
W GF + ++A+ IG + LA GK YRI+ PG+SP +R+AQV+VVA KNRKLSLP++ EE
Sbjct: 204 WHWGFFIITIASSIGFVTLALGKPFYRIKTPGDSPTIRIAQVIVVAFKNRKLSLPESHEE 263
Query: 246 LYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMP 305
LYEI++K+ T E+I H Q R LDKAAI P++ PW+VCTVTQVEEVKILTRM+P
Sbjct: 264 LYEISDKD--GTVEKIVHTKQMRFLDKAAI-PQEYIKPQPWKVCTVTQVEEVKILTRMLP 320
Query: 306 ILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFV 365
I+ASTI+MNTCLAQLQTFS+ QG M+ LGS VP SSIPVIPL+F+SIL+P+YE FFV
Sbjct: 321 IVASTIIMNTCLAQLQTFSVQQGNVMNLKLGSFTVPASSIPVIPLIFISILVPIYELFFV 380
Query: 366 PFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQ 425
PFARKIT HPSGITQLQRVG+GLVLS +SMTVAG+VEV RR+ + P ISLFWLSFQ
Sbjct: 381 PFARKITNHPSGITQLQRVGVGLVLSVISMTVAGIVEVKRRDQSRKNPSNPISLFWLSFQ 440
Query: 426 YCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRI 485
Y IFGIADMFT +GLLEFFY+E+P+ MK+L++SFT+LS+S GYFLS+ FV++IN VTKRI
Sbjct: 441 YGIFGIADMFTLVGLLEFFYRESPSSMKSLSTSFTWLSMSIGYFLSTVFVNLINVVTKRI 500
Query: 486 TPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPE--NCSDIKPKPL 543
TPSKQGWLHG D+N++N+NLFYWFLAI+S LN YLY A+ YKYK E N S I K L
Sbjct: 501 TPSKQGWLHGFDLNQSNLNLFYWFLAILSCLNFFNYLYWASRYKYKSEDQNSSPIGLKSL 560
Query: 544 MD 545
+
Sbjct: 561 HE 562
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543056|ref|XP_002512591.1| nitrate transporter, putative [Ricinus communis] gi|223548552|gb|EEF50043.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/569 (60%), Positives = 443/569 (77%), Gaps = 13/569 (2%)
Query: 9 FVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDT 68
FV+V+ AL+NMGFIAN +S+VLYF M+FD+ ++NTLTN GS FLL L+GGFISDT
Sbjct: 26 FVFVLV-ALDNMGFIANMVSLVLYFLKVMYFDIPNSANTLTNLMGSIFLLTLLGGFISDT 84
Query: 69 FLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFG 128
FL++ T L+F +E+LA+V++TIQA++K+LHPP CGK C++G I Y SL L + G
Sbjct: 85 FLNKLYTVLLFAVIEILAMVLMTIQAHAKSLHPPYCGKPKCVEGKIEFTLYASLALLALG 144
Query: 129 CGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWL 188
GG RG LP+ GA QF++NDP+ AK LA+YFN+ L+T + A +GVTGIV+V +W+
Sbjct: 145 SGGVRGALPSLGADQFNQNDPEEAKDLATYFNWMTLSTVLGAAVGVTGIVWVSVNDAWYK 204
Query: 189 GFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYE 248
GF++S++A F+G I LA GK Y +++PGESPL+R+ QV VVAIKNRKLSLP+NPEELYE
Sbjct: 205 GFMISTIAAFVGFIVLACGKRYYHLKEPGESPLIRIVQVFVVAIKNRKLSLPENPEELYE 264
Query: 249 INEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILA 308
I+++ER + E+I H +QFR LD+AAI+PKD AAPW+VCTVTQVEEVKILTRMMPIL
Sbjct: 265 ISDEERIYSDEKIAHTDQFRFLDRAAILPKD-LTAAPWQVCTVTQVEEVKILTRMMPILF 323
Query: 309 STILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFA 368
STI+MNTCLAQLQTFS+ QG M+ +G +VP S+P+IPL+FM IL+P+YEFFFVPFA
Sbjct: 324 STIIMNTCLAQLQTFSVEQGYIMNRFIGKFEVPAPSVPIIPLVFMVILIPMYEFFFVPFA 383
Query: 369 RKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCI 428
RKI+GHPSGITQLQRVGIGLVLSA+SM VAG+VEV RR+ ++ IS+FWLSFQY I
Sbjct: 384 RKISGHPSGITQLQRVGIGLVLSAISMAVAGIVEVKRRDQAHKDLAHPISVFWLSFQYGI 443
Query: 429 FGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPS 488
FGIADMFT +GLLEFFYKEAP+GMK+L++SFT+LSLSFGYFLS+ V++INA+TKR+TPS
Sbjct: 444 FGIADMFTLVGLLEFFYKEAPSGMKSLSTSFTWLSLSFGYFLSTVLVNLINAITKRVTPS 503
Query: 489 KQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENCSDIKPKPLMDPSA 548
KQGWLHG DIN NN+NLFYWFLAI+S +N +YL A+WYKYK + D
Sbjct: 504 KQGWLHGDDINSNNLNLFYWFLAILSCINFGVYLCMASWYKYKAD-----------DIDL 552
Query: 549 KEEKIDQDDGKAKQYGAASSDDGIIGKEK 577
K E DG A++ + ++ KE+
Sbjct: 553 KMESKGSTDGLLPAKVASNPESSVVKKEE 581
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124288|ref|XP_002329986.1| predicted protein [Populus trichocarpa] gi|222871411|gb|EEF08542.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/586 (60%), Positives = 446/586 (76%), Gaps = 18/586 (3%)
Query: 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFI 65
FVY + AL++MGF+AN +S+VLYF MHFD+ ++NTLTN GSTFLL ++GGFI
Sbjct: 35 ATMFVYGLV-ALDSMGFVANMVSLVLYFMGVMHFDIPTSANTLTNLMGSTFLLTVLGGFI 93
Query: 66 SDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLY 125
SD +L+R T L+FG LE++ALV++TIQA++KN+HPP CGK+SC++G I Y SL L
Sbjct: 94 SDAYLNRLHTVLLFGFLEIMALVLITIQAHAKNMHPPACGKASCVEGGIEYMLYFSLGLL 153
Query: 126 SFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKS 185
+ G GG RG LPA GA QF+E DP+ A+ALASYFN+ L+T V AV+GVTGIV +
Sbjct: 154 ALGSGGVRGALPALGADQFNEKDPEEARALASYFNWMTLSTVVGAVVGVTGIVNLSMFHG 213
Query: 186 WWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEE 245
WW GFLVS+V FIG + LAAGK Y ++QPG+SPL+R+AQV +AI+NR+L LP EE
Sbjct: 214 WWKGFLVSTVGTFIGFVILAAGKPFYHLRQPGDSPLIRIAQVFALAIRNRRLPLP-KVEE 272
Query: 246 LYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMP 305
LYEI++KE + E++ H QFR LDKAAI+P+ + APW+VC+VTQVEEVKILTRM+P
Sbjct: 273 LYEISDKETIAYEEKLEHTEQFRFLDKAAILPEGTQ-PAPWKVCSVTQVEEVKILTRMLP 331
Query: 306 ILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFV 365
IL STI+MNTCLAQLQTFS+ QG M +G P S+PVIPL+FM IL+P YEFFFV
Sbjct: 332 ILGSTIIMNTCLAQLQTFSVQQGNDMYRKIGKHDFPAPSVPVIPLVFMVILIPAYEFFFV 391
Query: 366 PFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQ 425
PFARK TGHP+GITQLQRVG+GLVLSAVSM VAGLVEV RR+ ISLFWLSFQ
Sbjct: 392 PFARKFTGHPAGITQLQRVGVGLVLSAVSMAVAGLVEVKRRD--QALKGHLISLFWLSFQ 449
Query: 426 YCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRI 485
Y IFGIADMFT +GLL+FFYKEAP+ MK+L++SFT+LSLSFGYFLS+ FV++INAVTKRI
Sbjct: 450 YGIFGIADMFTLVGLLDFFYKEAPSSMKSLSTSFTWLSLSFGYFLSTVFVNLINAVTKRI 509
Query: 486 TPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENC-SDIKPKPLM 544
TPS+QGWLHG+ ++ NN+NLFYWFLAI+S LN VLYLY+A+WYKYKP++ S+ KPK
Sbjct: 510 TPSRQGWLHGQLLDYNNLNLFYWFLAILSCLNFVLYLYSASWYKYKPDDTESNNKPK--- 566
Query: 545 DPSAKEEKIDQDDG--KAKQYGAASSDDGIIGKEKEFIHDEVKSQE 588
AK D D+G AK+ A +D+ + ++E +QE
Sbjct: 567 ---AK----DSDEGLLLAKESSGAKTDEEESEQNAANRNEEESAQE 605
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454111|ref|XP_004144799.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/522 (63%), Positives = 405/522 (77%), Gaps = 7/522 (1%)
Query: 18 ENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCL 77
E+MGF+AN S+V YF MHFDL A+NTLTNF GS FLL L+GGF+SDT+++R TCL
Sbjct: 49 ESMGFVANMTSLVQYFLFVMHFDLQTAANTLTNFMGSAFLLSLLGGFLSDTYINRLNTCL 108
Query: 78 IFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLP 137
IFG LEV+AL+++T+QAYS +L P C+KG IA FY SLYL + G GG RG LP
Sbjct: 109 IFGFLEVIALILITVQAYSHDLLPSPLCPKDCVKGRIAFVFYTSLYLLAIGSGGVRGALP 168
Query: 138 AFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVAN 197
A GA QF++ DPK AKAL ++FN+ LL+ + A +GVT IV+V K+W+ GF +S++A
Sbjct: 169 ALGADQFNQKDPKEAKALGTFFNYMLLSVVIGAAVGVTLIVWVAVNKAWYWGFFISALAA 228
Query: 198 FIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEK-ERAS 256
+G I A GK YRIQ PG+SPL+RV QV+VVAIKNR+L LPD P ELYEI++K S
Sbjct: 229 LVGFIIFAIGKPFYRIQVPGQSPLLRVIQVIVVAIKNRRLRLPDTPNELYEISDKLHMDS 288
Query: 257 TWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTC 316
+I H NQ R LDKAAI+PKD PW VC+VTQVEEVKI+TRM+PI STI+MNTC
Sbjct: 289 NHYKIVHTNQLRFLDKAAIVPKDIE-PQPWNVCSVTQVEEVKIITRMVPIFVSTIIMNTC 347
Query: 317 LAQLQTFSITQGAA--MDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGH 374
LAQLQTFS+ QG MD LG + P SIPVIPL+FM+ L+PLYEFFFVPFARKIT H
Sbjct: 348 LAQLQTFSVEQGNTRIMDKSLGHFQFPAPSIPVIPLVFMAFLIPLYEFFFVPFARKITHH 407
Query: 375 PSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADM 434
PSGITQLQRVG+GLVLSA++MTVAGLVEV RR+ E P KQISLFWL+FQY IFG+ADM
Sbjct: 408 PSGITQLQRVGVGLVLSAIAMTVAGLVEVKRRHQATEHPDKQISLFWLAFQYGIFGVADM 467
Query: 435 FTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLH 494
FT +GLLEFFYKEAP GM++L++SFT+LSL+ GY+LSS FV+++N VTK ITPSK+GW+
Sbjct: 468 FTLVGLLEFFYKEAPVGMRSLSTSFTFLSLALGYYLSSIFVNVVNKVTKNITPSKKGWVE 527
Query: 495 G---KDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPE 533
G +D+N NN+NLFYWFLAI+SVLN YLY A+WYKYK E
Sbjct: 528 GLIPEDLNHNNLNLFYWFLAILSVLNFFHYLYWASWYKYKTE 569
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 588 | ||||||
| TAIR|locus:2025886 | 591 | AT1G59740 [Arabidopsis thalian | 0.836 | 0.832 | 0.415 | 5.6e-100 | |
| TAIR|locus:2205769 | 567 | AT1G27040 [Arabidopsis thalian | 0.841 | 0.873 | 0.399 | 8.4e-97 | |
| TAIR|locus:2006907 | 601 | AT1G33440 [Arabidopsis thalian | 0.850 | 0.831 | 0.396 | 3.7e-96 | |
| TAIR|locus:2196739 | 585 | NRT1:2 "AT1G69850" [Arabidopsi | 0.377 | 0.379 | 0.417 | 6.9e-96 | |
| TAIR|locus:2181655 | 624 | AT5G13400 [Arabidopsis thalian | 0.852 | 0.802 | 0.373 | 1.3e-82 | |
| TAIR|locus:2170683 | 589 | AT5G62730 [Arabidopsis thalian | 0.831 | 0.830 | 0.350 | 7.6e-80 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.845 | 0.871 | 0.339 | 9.7e-80 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.829 | 0.827 | 0.341 | 4.2e-79 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.835 | 0.861 | 0.332 | 1.1e-78 | |
| TAIR|locus:2008855 | 590 | NRT1.1 "nitrate transporter 1. | 0.833 | 0.830 | 0.344 | 7.1e-77 |
| TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
Identities = 211/508 (41%), Positives = 312/508 (61%)
Query: 16 ALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFAT 75
A E MG A G +++ Y NEMHF L+ A+N +TNF G+ F+ L+GG++SD FL F T
Sbjct: 56 AFEIMGIAAVGNNLITYVINEMHFPLSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWT 115
Query: 76 CLIFGTLEVLALVMLTIQAYSKNLHPPDCGK---SSC--LKGAIAAYFYGSLYLYSFGCG 130
+IFG +E+ ++L++QA+ L PP C +C KG A F+ +LYL + G G
Sbjct: 116 IIIFGFVELSGFILLSVQAHLPQLKPPKCNPLIDQTCEEAKGFKAMIFFMALYLVALGSG 175
Query: 131 GNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGF 190
+ + A GA QF ++ PK +K L+SYFN A ++ +I +T +V+V T +GF
Sbjct: 176 CVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGF 235
Query: 191 LVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYE-- 248
VS+ A +G+I+L +G +R ++P S +A V+V AI RKL+ P +P L+
Sbjct: 236 GVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPIAHVIVAAILKRKLASPSDPRMLHGDH 295
Query: 249 --INEKERASTWERIPHANQFRCLDKAAIMPKDSAVA-APWRVCTVTQVEEVKILTRMMP 305
N+ +ST +PH +FR LDKA I +D+ +PWR+CTVTQVE+VK L ++P
Sbjct: 296 HVANDVVPSST---LPHTPRFRFLDKACIKIQDTNTKESPWRLCTVTQVEQVKTLISLVP 352
Query: 306 ILASTILMNTCLAQLQTFSITQGAAMDPHLG-SIKVPTSSIPVIPLLFMSILLPLYEFFF 364
I ASTI+ NT LAQLQTFS+ QG++M+ L S +P +S+ IP + + L+PLY+ F
Sbjct: 353 IFASTIVFNTILAQLQTFSVQQGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFL 412
Query: 365 VPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSF 424
VPFARK+TGH SGI L R+GIGL LS SM A ++E RR++ + + +S+FW++
Sbjct: 413 VPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVSAAMLEKKRRDS-SVLDGRILSIFWITP 471
Query: 425 QYCIFGIADMFTFIGLLEFFYKEAPAGMKTLAXXXXXXXXXXXXXXXXAFVDIINAVTKR 484
Q+ IFGI++MFT +GL+EFFYK++ GM++ V ++N +T
Sbjct: 472 QFLIFGISEMFTAVGLIEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITST 531
Query: 485 ITPSKQGWLHGKDINKNNVNLFYWFLAI 512
SK GWL D+NK+ ++LFYW LA+
Sbjct: 532 SVDSK-GWLGENDLNKDRLDLFYWLLAV 558
|
|
| TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
Identities = 206/516 (39%), Positives = 300/516 (58%)
Query: 9 FVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDT 68
FV V LEN+ F+AN ++VLY KN MH LA +S+ +T F + FLL L+GGF++D
Sbjct: 36 FVLAV-EILENLAFLANASNLVLYLKNFMHMSLARSSSEVTTFMATAFLLALLGGFLADA 94
Query: 69 FLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLK-----GAIAAYFYGSLY 123
F S F LI ++E L L++LTIQA +L PP C S+ L+ G+ AA+ + LY
Sbjct: 95 FFSTFVIFLISASIEFLGLILLTIQARRPSLMPPPCKSSAALRCEVVGGSKAAFLFVGLY 154
Query: 124 LYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTE 183
L S G GG +G+LP+ GA QFDE PKG K +++FN+Y+ + A++ VT +V++
Sbjct: 155 LVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFNYYVFCLSCGALVAVTFVVWIEDN 214
Query: 184 KSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVA-IKNRKLSLPDN 242
K W GF VS+++ F+ ++ G Y+ + P SPL + +VL+ A I + N
Sbjct: 215 KGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIFKVLLAASIVSCSSKTSSN 274
Query: 243 PEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTR 302
E+ + T + N CL+KA I K + W CTV QVE+VKI+ +
Sbjct: 275 HFTSREVQSEHEEKTPSQ-SLTNSLTCLNKA-IEGKTHHI---WLECTVQQVEDVKIVLK 329
Query: 303 MMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEF 362
M+PI TI++N CLAQL T+S+ Q A M+ + + VP++S+PV P++FM IL P Y+
Sbjct: 330 MLPIFGCTIMLNCCLAQLSTYSVHQAATMNRKIVNFNVPSASLPVFPVVFMLILAPTYDH 389
Query: 363 FFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNET------PPKQ 416
+PFARK+T GIT LQR+G+GLVLS V+M VA LVE+ R+ E
Sbjct: 390 LIIPFARKVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKRKQVAREAGLLDSEETLP 449
Query: 417 ISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLAXXXXXXXXXXXXXXXXAFVD 476
I+ W++ QY G AD+FT GLLEFF+ EAP+ M++LA V
Sbjct: 450 ITFLWIALQYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATSLSWASLALGYYLSSVMVP 509
Query: 477 IINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAI 512
I+N VTK + + WL G+ +N+N ++LFYW + +
Sbjct: 510 IVNRVTK--SAGQSPWL-GEKLNRNRLDLFYWLMCV 542
|
|
| TAIR|locus:2006907 AT1G33440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 205/517 (39%), Positives = 307/517 (59%)
Query: 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGG 63
T FV + F A E M A G +++ Y NEMHF L+ ++N +TNF G+ FLL L+GG
Sbjct: 42 TRAALFV-LGFQAFEMMAIAAVGNNLITYVFNEMHFPLSKSANLVTNFIGTVFLLSLLGG 100
Query: 64 FISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSS----CLK--GAIAAY 117
F+SD++L F T L+FG +E+ ++L++QA+ L PP+C S C++ G AA
Sbjct: 101 FLSDSYLGSFRTMLVFGVIEISGFILLSVQAHLPELRPPECNMKSTTIHCVEANGYKAAT 160
Query: 118 FYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGI 177
Y +L L + G G + + + GA QF D + L+S+FN A ++ +I +T +
Sbjct: 161 LYTALCLVALGSGCLKPNIISHGANQFQRKD---LRKLSSFFNAAYFAFSMGQLIALTLL 217
Query: 178 VYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKL 237
V+V T +GF VS+ G+I+L AG YR + P S +AQV V AI RK
Sbjct: 218 VWVQTHSGMDVGFGVSAAVMAAGMISLVAGTSFYRNKPPSGSIFTPIAQVFVAAITKRKQ 277
Query: 238 SLPDNPEELYEIN-EKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEE 296
P NP +++ + + R + H+N+FR LDKA I + A+ +PWR+CT+ QV +
Sbjct: 278 ICPSNPNMVHQPSTDLVRVKP---LLHSNKFRFLDKACIKTQGKAMESPWRLCTIEQVHQ 334
Query: 297 VKILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLG-SIKVPTSSIPVIPLLFMSI 355
VKIL ++PI A TI+ NT LAQLQTFS+ QG++M+ H+ + ++P +S+ IP + +
Sbjct: 335 VKILLSVIPIFACTIIFNTILAQLQTFSVQQGSSMNTHITKTFQIPPASLQAIPYIILIF 394
Query: 356 LLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPK 415
+PLYE FFVP ARK+TG+ SGI+ LQR+G GL L+ SM A LVE RR +F E
Sbjct: 395 FVPLYETFFVPLARKLTGNDSGISPLQRIGTGLFLATFSMVAAALVEKKRRESFLEQNV- 453
Query: 416 QISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLAXXXXXXXXXXXXXXXXAFV 475
+S+FW++ Q+ IFG+++MFT +GL+EFFYK++ M++ V
Sbjct: 454 MLSIFWIAPQFLIFGLSEMFTAVGLVEFFYKQSSQSMQSFLTAMTYCSYSFGFYLSSVLV 513
Query: 476 DIINAVTKRI-TPSKQGWLHGKDINKNNVNLFYWFLA 511
+N VT + +K+GWL D+NK+ ++ FYW LA
Sbjct: 514 STVNRVTSSNGSGTKEGWLGDNDLNKDRLDHFYWLLA 550
|
|
| TAIR|locus:2196739 NRT1:2 "AT1G69850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
Identities = 96/230 (41%), Positives = 147/230 (63%)
Query: 289 CTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVI 348
CTV QVE+VKI+ +M+PI A TI++N CLAQL TFS+ Q A+M+ +GS+K+P +S+P+
Sbjct: 333 CTVQQVEDVKIVLKMLPIFACTIMLNCCLAQLSTFSVQQAASMNTKIGSLKIPPASLPIF 392
Query: 349 PLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNA 408
P++F+ IL P+Y+ +PFARK T +G+T LQR+G+GLVLS ++M VA LVE+ R+
Sbjct: 393 PVVFIMILAPIYDHLIIPFARKATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKGV 452
Query: 409 FNET---PPKQ---ISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLAXXXXXX 462
++ K+ ++ W++ QY G AD+FT GLLE+F+ EAP+ M++LA
Sbjct: 453 AKDSGLLDSKETLPVTFLWIALQYLFLGSADLFTLAGLLEYFFTEAPSSMRSLATSLSWA 512
Query: 463 XXXXXXXXXXAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAI 512
V I+N++T + WL GK IN+ ++ FYW + +
Sbjct: 513 SLAMGYYLSSVIVSIVNSITG--SSGNTPWLRGKSINRYKLDYFYWLMCV 560
|
|
| TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
Identities = 196/525 (37%), Positives = 284/525 (54%)
Query: 8 FFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISD 67
FF++ A E M + ++MV + MH +SN + NF G + ++GGF++D
Sbjct: 72 FFIFGNEMA-ERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQASSVLGGFLAD 130
Query: 68 TFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPP--DCGKSSCLKGAIAA-------YF 118
+L R+ T IF T+ ++ L+ +T+ A K P +CG+ S L G Y
Sbjct: 131 AYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCEEAKSWQMLYL 190
Query: 119 YGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIV 178
Y LY+ FG G R + +FGA QFDE L +FNF+ L+ T+ A+I T +V
Sbjct: 191 YTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVV 250
Query: 179 YVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLS 238
YV E W + F +VA I AG LYR + PG SPL RVAQVLV A + R +
Sbjct: 251 YVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAA 310
Query: 239 LPDNPE-ELYEINEKERASTWER-IPHANQFRCLDKAAI-MPKDSAVAAPWRVCTVTQVE 295
+ LYE+ + A R IPH+N F LDKAA+ + +D +PW++CTVTQVE
Sbjct: 311 FTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSPWKLCTVTQVE 370
Query: 296 EVKILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSI 355
EVKIL R++PI TI+++ L + T S+ Q ++ H+ +K+P + +PV P L + +
Sbjct: 371 EVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFL 430
Query: 356 LLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRN-------A 408
+L LY FVP R+ITG+P G +QLQRVGIGL +S +S+ AGL E RR+
Sbjct: 431 ILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYRRHYAIQNGFE 490
Query: 409 FNE-TPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLAXXXXXXXXXXX 467
FN T ++ +WL QYC+ GIA++F +GLLEF Y+EAP MK++
Sbjct: 491 FNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLG 550
Query: 468 XXXXXAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAI 512
+I+ A T R + K WL ++IN + YW L +
Sbjct: 551 CFAATILNNIVKAAT-RDSDGKS-WL-SQNINTGRFDCLYWLLTL 592
|
|
| TAIR|locus:2170683 AT5G62730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
Identities = 181/517 (35%), Positives = 281/517 (54%)
Query: 9 FVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDT 68
FV VV LEN+ F+AN ++VLY +M F +GA+N +T F G+ F L L+GGF++D
Sbjct: 65 FVLVV-EVLENLAFLANASNLVLYLSTKMGFSPSGAANAVTAFMGTAFFLALLGGFLADA 123
Query: 69 FLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFG 128
F + F L+ +E L L++LT+QA+ + P + + LYL + G
Sbjct: 124 FFTTFHIYLVSAAIEFLGLMVLTVQAHEHSTEPWS-----------RVFLFVGLYLVALG 172
Query: 129 CGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWL 188
GG +G+LP GA QFDE G + + +FN+++ + + A+I VT +V++ K W
Sbjct: 173 VGGIKGSLPPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVTVVVWLEDNKGWSY 232
Query: 189 GFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAI--KNRKLSLPDNPEEL 246
GF VS+ A I + AG +YR++ P SP+ + +VL A+ K +K
Sbjct: 233 GFGVSTAAILISVPVFLAGSRVYRLKVPSGSPITTLFKVLTAALYAKYKKRRTSRIVVTC 292
Query: 247 YEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPI 306
+ N+ + + T + + F ++ + ++ P R CT QV++VKI+ +++PI
Sbjct: 293 HTRNDCDDSVTKQNCDGDDGFLGSFLGEVVRERESLPRPLR-CTEEQVKDVKIVIKILPI 351
Query: 307 LASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVP 366
STI++N CLAQL TFS+ Q + M+ LGS VP +++PV P++FM IL P Y +P
Sbjct: 352 FMSTIMLNCCLAQLSTFSVQQASTMNTKLGSFTVPPAALPVFPVVFMMILAPTYNHLLLP 411
Query: 367 FARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAF-----NE------TPPK 415
ARK T +GIT LQR+G GLVLS V+M VA LVE R++ N + P
Sbjct: 412 LARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVETKRKHVVVSCCSNNNSSSYSSSPL 471
Query: 416 QISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLAXXXXXXXXXXXXXXXXAFV 475
I+ W++ QY G AD+FT G++EFF+ EAP+ M++LA V
Sbjct: 472 PITFLWVAIQYVFLGSADLFTLAGMMEFFFTEAPSTMRSLATSLSWASLAMGYYFSSVLV 531
Query: 476 DIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAI 512
+N VT WL G+++N+ ++ FYW + +
Sbjct: 532 SAVNFVTG--LNHHNPWLLGENLNQYHLERFYWLMCV 566
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 177/521 (33%), Positives = 287/521 (55%)
Query: 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFI 65
C F + E + + +++ Y + +M+ + AS +++N+ G+ + L+G FI
Sbjct: 32 CRFILGT--ECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFI 89
Query: 66 SDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSC--LKGAIAAYFYGSLY 123
+D +L R+ T F + + + +LTI A L P C +C G A F +LY
Sbjct: 90 ADAYLGRYWTIASFVVIYIAGMTLLTISASVPGL-TPTCSGETCHATAGQTAITFI-ALY 147
Query: 124 LYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTE 183
L + G GG + + +FGA QFD+ D K ++ +S+FN++ V A+I + +V++
Sbjct: 148 LIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMN 207
Query: 184 KSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNP 243
W G V +VA I ++ AG YR+Q+PG SPL R+ QV+V + + K+ +P++
Sbjct: 208 VGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDE 267
Query: 244 EELYEINEKERASTWER-IPHANQFRCLDKAAIMP----KDSAVAAPWRVCTVTQVEEVK 298
LYE + E + R + H DKAA+ K +A ++ W++CTVTQVEE+K
Sbjct: 268 SLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELK 327
Query: 299 ILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLG-SIKVPTSSIPVIPLLFMSILL 357
L R++PI A+ I+ + +Q+ T + QG +D H+G + K+P++S+ + L +
Sbjct: 328 ALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWA 387
Query: 358 PLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIR------RNAFNE 411
P+Y+ VPFARK TGH G TQLQR+GIGLV+S SM AG++EV R N +NE
Sbjct: 388 PVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNE 447
Query: 412 -TPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLAXXXXXXXXXXXXXX 470
T P +++FW QY + G A++FTFIG LEFFY +AP M++L
Sbjct: 448 ETIP--MTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYL 505
Query: 471 XXAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLA 511
V ++ VT+ + + GW+ K++N +++ F+W LA
Sbjct: 506 STFLVTLVTKVTR--SGGRPGWI-AKNLNNGHLDYFFWLLA 543
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 172/503 (34%), Positives = 275/503 (54%)
Query: 18 ENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCL 77
E + + +++ Y+ +E+H A++ + + G+ ++ L+G I+D++ R+ T
Sbjct: 69 ERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIA 128
Query: 78 IFGTLEVLALVMLTIQAYSKNLHPPDC-GKSS--CLKGAIAAY--FYGSLYLYSFGCGGN 132
F + + + +LT+ A L P C G ++ C Y F+ LYL + G GG
Sbjct: 129 SFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGI 188
Query: 133 RGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLV 192
+ + +FGA QFD+ DP+ AS+FN++ + + + I T +V+V W LGFL+
Sbjct: 189 KPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLI 248
Query: 193 SSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEK 252
+V + + + G LYR Q+PG SP+ RV QVLV A + KL+LP++ LYE EK
Sbjct: 249 PTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREK 308
Query: 253 ERASTWER-IPHANQFRCLDKAAIMP----KDSAVAAPWRVCTVTQVEEVKILTRMMPIL 307
R I H + ++ LDKAA++ K A + PW++CTVTQVEEVK L RM PI
Sbjct: 309 NSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIW 368
Query: 308 ASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPF 367
AS I+ + +Q+ T + QG +M+ + S ++P +S V L + I +P+Y+ F VPF
Sbjct: 369 ASGIVYSVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPF 428
Query: 368 ARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYC 427
R+ TG P G+T LQR+GIGL LS +S+ A +VE +R + +S+FW QY
Sbjct: 429 VRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDFVA--MSIFWQIPQYI 486
Query: 428 IFGIADMFTFIGLLEFFYKEAPAGMKTLAXXXXXXXXXXXXXXXXAFVDIINAVTKRITP 487
+ GIA++F FIG +EFFY E+P M+++ + ++ T
Sbjct: 487 LMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTA--LG 544
Query: 488 SKQGWLHGKDINKNNVNLFYWFL 510
K GW+ D+NK +++ F+W L
Sbjct: 545 GKDGWVPD-DLNKGHLDYFFWLL 566
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
Identities = 168/506 (33%), Positives = 282/506 (55%)
Query: 18 ENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCL 77
E + + G ++V Y ++ ++ A A+N +TN+ G+ ++ L+G FI+D +L R+ T
Sbjct: 41 ERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIA 100
Query: 78 IFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAI-AAYFYGSLYLYSFGCGGNRGTL 136
F + V + +LT+ A L P +C +C + A F+ +LY+ + G GG + +
Sbjct: 101 TFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCV 160
Query: 137 PAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVA 196
+FGA QFDEND +S+FN++ + V A+I T +V++ W GF V +VA
Sbjct: 161 SSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVA 220
Query: 197 NFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERAS 256
I + G YR+Q+PG SPL R+ QV+V A + + +P++ L+E + E
Sbjct: 221 MVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNI 280
Query: 257 TWER-IPHANQFRCLDKAAIMPKDSAV----AAPWRVCTVTQVEEVKILTRMMPILASTI 311
R + H + + DKAA+ + ++ PWR+C+VTQVEE+K + ++P+ A+ I
Sbjct: 281 KGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGI 340
Query: 312 LMNTCLAQLQTFSITQGAAMDPHLG-SIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARK 370
+ T +Q+ T + QG MD H+G + ++P++S+ + + + P+Y+ F +P ARK
Sbjct: 341 VFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARK 400
Query: 371 ITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRN---AFNETPPKQI--SLFWLSFQ 425
T + G TQLQR+GIGLV+S +M AG++EV+R + N KQI S+FW Q
Sbjct: 401 FTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQ 460
Query: 426 YCIFGIADMFTFIGLLEFFYKEAPAGMKTLAXXXXXXXXXXXXXXXXAFVDIINAVTKRI 485
Y + G A++FTFIG LEFFY +AP M++L V ++ +TK+
Sbjct: 461 YLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKK- 519
Query: 486 TPSKQGWLHGKDINKNNVNLFYWFLA 511
K GW+ ++N+ +++ F++ LA
Sbjct: 520 -NGKPGWIPD-NLNRGHLDYFFYLLA 543
|
|
| TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 178/516 (34%), Positives = 278/516 (53%)
Query: 16 ALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFAT 75
A+E + + G+++V Y MH A A+NT+TNF G++F+LCL+GGFI+DTFL R+ T
Sbjct: 42 AVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLT 101
Query: 76 CLIFGTLEVLALVMLTIQAYSKNLHPPDCG---KSSC--LKGAIAAYFYGSLYLYSFGCG 130
IF ++ + +LT+ L PP C S C G Y +LYL + G G
Sbjct: 102 IAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTG 161
Query: 131 GNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTE--KSWWL 188
G + ++ FG+ QFDE +PK + +FN + V +++ VT +VYV + + W
Sbjct: 162 GVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKW-- 219
Query: 189 GFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYE 248
G+ + + A + L AG YR ++ SP+ +VA V+V A +NRKL LP +P LY+
Sbjct: 220 GYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWRNRKLELPADPSYLYD 279
Query: 249 INEKERASTW----ERIPHANQFRCLDKAAIMPKDSAVAA----PWRVCTVTQVEEVKIL 300
+++ A +++PH QFR LDKAAI +++ V + W + T+T VEEVK +
Sbjct: 280 VDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRDQEAGVTSNVFNKWTLSTLTDVEEVKQI 339
Query: 301 TRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLY 360
RM+PI A+ IL T AQL T S+ Q +D +GS ++P +S+ V + + + +Y
Sbjct: 340 VRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIGSFEIPPASMAVFYVGGLLLTTAVY 399
Query: 361 EFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIR-RNAFNETPP-KQIS 418
+ + +K+ +P G+ LQR+G+GL +++M VA LVE+ R R A P K +
Sbjct: 400 DRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVELKRLRTAHAHGPTVKTLP 459
Query: 419 L-FWLSF-QYCIFGIADMFTFIGLLEFFYKEAPAGMKTLAXXXXXXXXXXXXXXXXAFVD 476
L F+L QY I GI + + G L+FF +E P GMK ++ V
Sbjct: 460 LGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVT 519
Query: 477 IINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAI 512
I+ T + P W+ D+NK + FYW +A+
Sbjct: 520 IVEKFTGKAHP----WI-ADDLNKGRLYNFYWLVAV 550
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q93VV5 | PTR16_ARATH | No assigned EC number | 0.4302 | 0.8622 | 0.8578 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 588 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 4e-46 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-15 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 1e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.001 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 4e-46
Identities = 99/397 (24%), Positives = 158/397 (39%), Gaps = 38/397 (9%)
Query: 73 FATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGN 132
F T L+ + + V+LT+ A PP L A FY LYL + G GG
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAI-----PPS------LSPVQVALFYIGLYLIALGTGGI 49
Query: 133 RGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLV 192
+ + AFGA QFDE +F+++ + ++I Y+ + LGF +
Sbjct: 50 KPNVSAFGADQFDETQDP---RRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFGL 106
Query: 193 SSVANFIGLIALAAGKCLYRIQQPGES--PLVRVAQVLVVAIKNRKLSLPDNPEELYEIN 250
+V + L+ G Y+ + P V +A ++ A KNRKL LP + LY
Sbjct: 107 PAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYWAL 166
Query: 251 EKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILAST 310
EK + + + + V ++ + M+PI A
Sbjct: 167 EKYNKRSISQTKVHTRVAVIFIPLPKFWALF-------DQQGSVWLLQAILLMLPIWAFW 219
Query: 311 ILMNTCLAQLQTFSITQGAAMDPHLGS-IKVPTSSIPVIPLLFMSILLPLYEFFFVPFAR 369
IL + QL T + Q MD + ++P +S L + ILLP+ +F P R
Sbjct: 220 ILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLR 279
Query: 370 KITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRR---NAFNETPPKQ---ISLFWLS 423
G+T QR G+G+ + V+ +A +VE R A T P + + W
Sbjct: 280 ----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVPLFILWSL 335
Query: 424 FQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFT 460
+ I G+ G LEF P+ M +L + +
Sbjct: 336 PELFISGVG----LAGALEFAPDALPSSMMSLWTLLS 368
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 2e-15
Identities = 84/406 (20%), Positives = 156/406 (38%), Gaps = 60/406 (14%)
Query: 29 MVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 88
+VLY N + ++ A+N F +L L+G I+D++L +F T L + V+
Sbjct: 10 LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69
Query: 89 MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDEND 148
+ ++ A HP + L G + G G P A D+ +
Sbjct: 70 LASLGAVPSLGHPLH--DALSLVG------------LALIALGTGGIKPCVSAFGGDQFE 115
Query: 149 PKGAKALASYFNFYLLATTVAAVIGVT------GIVYVFTEKS-WWLGFLVSSVANFIGL 201
+ +F+F+ A ++ G V F + + L F V + + L
Sbjct: 116 ERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTLAL 175
Query: 202 IALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTWERI 261
I + G +Y+ + P + + +V + +V A+K R + R+ W R+
Sbjct: 176 IVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR---------------FRTRSEDWPRL 220
Query: 262 PHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQ 321
LD AA PK R+ + K L R++ + + Q
Sbjct: 221 HW------LDWAA--PK-----YLIRM-----IRSTKRLLRVLFLFIPLPMFWALFDQQG 262
Query: 322 TFSITQGAAMDPHLGSIKVPTSSIPVI-PLLFMSILLPLYEFFFVPFARKITGHPSGITQ 380
+ Q MD +G + + + PLL + IL+P++++ P K + T
Sbjct: 263 SRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVL-ILVPIFDYVVYPALAKCG---TRFTS 318
Query: 381 LQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQY 426
L+++ +G++L+A++ VA L++ E P I F
Sbjct: 319 LRKMAVGMLLAALAFAVAALLQNKINPTLPEEPSASII-FLQVLNT 363
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 70/448 (15%), Positives = 150/448 (33%), Gaps = 48/448 (10%)
Query: 29 MVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 88
+ + + FD A+ + + +L ++GG+++D L T ++ L + +
Sbjct: 48 LYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHL 107
Query: 89 MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDEND 148
+L I G Y L L G G + + + + ++D
Sbjct: 108 VLAI--------SSVSGPGG---------LYIGLALIIVGTGLFKPNISSLLGELYPKDD 150
Query: 149 PKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAG- 207
P+ F + + + ++I + W +GF +++V IGL+ G
Sbjct: 151 PRRDGG----FTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206
Query: 208 KCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTWERIPHANQF 267
+ + I + + +L V + L L N I A +
Sbjct: 207 RHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIY 266
Query: 268 RCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQ 327
+A PK +E + L +P+ ++ Q+ +
Sbjct: 267 --FAEAFRSPKVF--------------DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLY 310
Query: 328 GAAM-DPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGI 386
+ + +VP + + F+ + P+ + R PS + +
Sbjct: 311 ADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRG-NKQPSTPIKF---AL 366
Query: 387 GLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYK 446
GL+L+ + + L + P +S++WL Y + ++F L K
Sbjct: 367 GLILAGLGFLILLLAGIWFGG-----PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTK 421
Query: 447 EAPAGMKTLASSFTYLSLSFGYFLSSAF 474
AP +K+ + +L+++ G L
Sbjct: 422 LAPPALKSFIMAMWFLTVAAGQTLGGQV 449
|
Length = 498 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 34/205 (16%), Positives = 62/205 (30%), Gaps = 25/205 (12%)
Query: 1 MLLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCL 60
+L + + L + G+ + LY + + A A L+ F L L
Sbjct: 170 LLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGAL 229
Query: 61 VGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYG 120
+GG +SD R LI L L L++L + A
Sbjct: 230 LGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL-------------------APSLALLLV 270
Query: 121 SLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYV 180
+L L FG G L + +A + + ++ +G +
Sbjct: 271 ALLLLGFGLGFAFPALLTLASELA------PPEARGTASGLFNTFGSLGGALGPLLAGLL 324
Query: 181 FTEKSWWLGFLVSSVANFIGLIALA 205
+ FL+ + + + L
Sbjct: 325 LDTGGYGGVFLILAALALLAALLLL 349
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 588 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.97 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.97 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.97 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.96 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.95 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.95 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.95 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.95 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.94 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.94 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.94 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.94 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.94 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.93 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.93 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.93 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.93 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.93 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.93 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.93 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.93 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.92 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.92 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.92 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.92 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.92 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.92 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.92 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.92 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.92 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.92 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.92 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.91 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.91 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.91 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.91 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.91 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.91 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.91 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.91 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.91 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.9 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.9 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.9 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.9 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.89 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.89 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.89 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.89 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.89 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.89 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.89 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.88 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.88 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.88 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.88 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.87 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.87 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.87 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.87 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.87 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.87 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.86 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.86 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.85 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.85 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.84 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.84 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.84 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.84 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.84 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.83 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.83 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.82 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.8 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.79 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.79 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.77 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.76 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.75 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.74 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.74 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.72 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.71 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.71 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.7 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.69 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.69 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.64 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.63 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.63 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.62 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.61 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.6 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.58 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.51 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.51 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.47 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.47 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.46 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.46 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.43 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.41 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.39 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.39 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.38 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.37 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.37 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.37 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.35 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.34 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.34 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.34 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.34 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.33 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.33 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.33 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.33 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.33 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.33 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.32 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.32 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.31 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.3 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.29 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.28 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.28 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.27 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.26 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.26 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.26 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.26 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.25 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.24 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.24 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.22 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.21 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.2 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.2 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.2 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.2 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.19 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.18 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.18 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.17 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.16 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.16 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.16 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.13 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.13 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.12 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.12 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.12 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.12 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.11 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.1 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.09 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.09 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.08 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.08 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.08 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.07 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.06 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.04 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.04 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.04 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.03 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.03 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.01 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.01 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.0 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.0 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.0 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.98 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.98 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.93 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.91 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.91 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.89 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.88 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.85 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.85 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.83 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.81 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.8 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.79 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.77 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.77 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.76 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.75 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.74 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.72 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.66 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.64 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.64 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.64 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.6 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.59 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.56 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.53 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.52 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.51 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.51 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.46 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.43 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.33 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.18 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.13 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.12 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.12 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.1 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.04 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.04 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.01 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.99 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.92 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.91 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.88 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.82 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.77 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.76 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.71 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 97.68 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.61 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.6 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.57 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.57 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.55 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.48 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.27 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.08 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.06 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.95 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.8 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.78 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.71 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.52 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.4 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.38 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.13 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.12 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.37 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.3 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 95.25 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.57 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 94.26 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.79 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 93.62 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 93.24 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 92.83 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 92.07 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 91.3 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 91.18 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 90.6 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 89.24 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 89.15 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 86.19 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 85.5 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 85.11 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 82.34 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 82.01 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 80.41 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=408.78 Aligned_cols=521 Identities=40% Similarity=0.667 Sum_probs=464.9
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHH
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 84 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ 84 (588)
++....++..+.+|++++||+.+++..|+++++|.+...+...++.|.+.+.+.++++++++|.++||.+++.+++.+..
T Consensus 36 ~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~ 115 (571)
T KOG1237|consen 36 WLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISL 115 (571)
T ss_pred hHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCC----CCCCcCC--chhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhH
Q 007816 85 LALVMLTIQAYSKNLHPPDC----GKSSCLK--GAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASY 158 (588)
Q Consensus 85 ig~~l~~~a~~~~~~~~~~~----~~~~~~~--~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~ 158 (588)
+|..+.+++...+.+.|+.| ..++|+. ......++.+..+..+|.|+..|+..++.+|+++...|+++..+.+.
T Consensus 116 ~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~f 195 (571)
T KOG1237|consen 116 LGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSF 195 (571)
T ss_pred HHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccc
Confidence 99999999999999999886 4467886 44678899999999999999999999999999998778888778899
Q ss_pred HHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCC
Q 007816 159 FNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLS 238 (588)
Q Consensus 159 ~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (588)
|+|+|+..++|.+++-.+..|++++.+|.+.|.++.+++.++.++++.+.+.|++.+|.+++...+.+++..+.++++..
T Consensus 196 FnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~ 275 (571)
T KOG1237|consen 196 FNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAV 275 (571)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCC----CCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 007816 239 LPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSA----VAAPWRVCTVTQVEEVKILTRMMPILASTILMN 314 (588)
Q Consensus 239 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (588)
.+..++.+ +. ........++.+..+++|++++..+.+. ...+|+.|+.+++|+.|..++.++++...+.++
T Consensus 276 ~~~~~~~~-~~----~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~ 350 (571)
T KOG1237|consen 276 VSLDPEEL-YY----DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYS 350 (571)
T ss_pred CCCcchhc-cc----cccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHH
Confidence 76654443 10 0000022334567778898888766532 346799999999999999999999999999999
Q ss_pred HhhhhchhHHHHHhhhcCCCCCc-ccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHH
Q 007816 315 TCLAQLQTFSITQGAAMDPHLGS-IKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAV 393 (588)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~ 393 (588)
..+.|+.+.+..|...|+.+.+. +.++++.++++..+...+..|+.||+..|+.||.+.++++.+.+.++.+|+++..+
T Consensus 351 ~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~ 430 (571)
T KOG1237|consen 351 TVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSIL 430 (571)
T ss_pred HHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHH
Confidence 99999999999999999998876 89999999999999999999999999999999998887889999999999999999
Q ss_pred HHHHHHHHHHHHhhhccC--CCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHH
Q 007816 394 SMTVAGLVEVIRRNAFNE--TPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLS 471 (588)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~ 471 (588)
+|...+..+.++.+.+.+ ....+++++|++++|++.|++|++..+...|+.++++|++||+.+++++.+...+|++++
T Consensus 431 sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~ls 510 (571)
T KOG1237|consen 431 SMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLS 510 (571)
T ss_pred HHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988777654 223579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccccccCC
Q 007816 472 SAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPEN 534 (588)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~le 534 (588)
..+..++...++. ..+|....++|.++++++||+++..+.++...+.++.++++.++.+
T Consensus 511 s~Lv~~v~~~t~~----~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~ 569 (571)
T KOG1237|consen 511 SVLVSLVQFSTGK----AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK 569 (571)
T ss_pred HHHHHHHHHhcCC----CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence 9999988765421 3379983399999999999999999999999888888888776543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=334.12 Aligned_cols=460 Identities=15% Similarity=0.241 Sum_probs=353.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccC----CChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMH----FDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIF 79 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~ 79 (588)
|||.+|.+...|++||++|||+...+..|++.+++ +|++++-.+.+.|..-..+.+++|||++||++|+|+++..|
T Consensus 19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lG 98 (498)
T COG3104 19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLG 98 (498)
T ss_pred CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 79999999999999999999999999999998887 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
.++.++|.++++.+.. .....++++..+.++|.|++.|++.++++|+.|+++|+ |...+
T Consensus 99 ail~~iGh~~L~~~~~-----------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gF 157 (498)
T COG3104 99 AILMAIGHLVLAISSV-----------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGF 157 (498)
T ss_pred HHHHHHHHHHHhcccc-----------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCc
Confidence 9999999999998740 13447999999999999999999999999999998864 88999
Q ss_pred HHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHH--------HHHHHHHH
Q 007816 160 NFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVR--------VAQVLVVA 231 (588)
Q Consensus 160 ~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 231 (588)
+++|+.+|+|+.++|.+.+++.+++||+..|.++.+-+.+.++.+...++++......+.+... ....+...
T Consensus 158 t~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (498)
T COG3104 158 TLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMI 237 (498)
T ss_pred cEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888887766544322111100 00000000
Q ss_pred HHhcCCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 007816 232 IKNRKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTI 311 (588)
Q Consensus 232 ~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (588)
.. .+ .-.+..++.-.-.. ..+ .. ...+.+-.+ .-.| .+.. +++||++..++++....
T Consensus 238 ~~-----~~--~~~~l~~~~~~~~~--~~~-------~i-~~~~~~~~~--~~~~---~~~~-~er~r~~~~~~Lfl~~~ 294 (498)
T COG3104 238 LA-----AL--LTLLLNQNTFSGVL--LVI-------SI-LIAIIYFAE--AFRS---PKVF-DERRRLLAAIPLFLFAV 294 (498)
T ss_pred HH-----HH--HHHHHHHHHHHHHH--HHH-------HH-HHHHHHHHH--Hhcc---CccH-HHHHHHHHHHHHHHHHH
Confidence 00 00 00000000000000 000 00 000000000 0001 1123 77899999999999999
Q ss_pred HHHHhhhhchhHHHHHhhhcCC-CCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHH
Q 007816 312 LMNTCLAQLQTFSITQGAAMDP-HLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVL 390 (588)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l 390 (588)
++|+.+.|..+.+..+...+.. +..|+.++++.++.+|++.+++.+|+.+++.+|++++.. .++...++.+|+++
T Consensus 295 iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~----~ps~~~KFalGl~l 370 (498)
T COG3104 295 IFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNK----QPSTPIKFALGLIL 370 (498)
T ss_pred HHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCC----CCCcchHHHHHHHH
Confidence 9999999999988887755543 334578999999999999999999999999999877652 35788899999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHH
Q 007816 391 SAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFL 470 (588)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i 470 (588)
++++++++........ .+ ....+.+|+++.|++.+++|.+++|...++++.++|+++.+..+|.+.+.+..++.+
T Consensus 371 ~g~~fl~l~~~~~~~~---~~--~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l 445 (498)
T COG3104 371 AGLGFLILLLAGIWFG---GP--SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTL 445 (498)
T ss_pred HHHHHHHHHHHHHhhc---CC--CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999887643221 11 135789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007816 471 SSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYK 529 (588)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~ 529 (588)
+..+.+.... +.. ..+......+|+.+++..++..+..+.+.|+.+
T Consensus 446 ~g~va~~~~~-~~~------------~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~ 491 (498)
T COG3104 446 GGQVAGLTAV-TDP------------AYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLN 491 (498)
T ss_pred hceecccccc-cch------------hhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9888773210 000 111223455788888888887777777766544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=332.90 Aligned_cols=460 Identities=11% Similarity=0.170 Sum_probs=329.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 83 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~ 83 (588)
|||.+|.+++.+++||++||++.+++..|+++++|++..+++++.+.+.+...+..+++|+++||++||||+++++.+++
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~ 91 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVL 91 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998679999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007816 84 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 163 (588)
Q Consensus 84 ~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~ 163 (588)
.+|+++++++.+. ...++++|.++|+|.|+..|+.+++++|++|++++ +|++.++++|
T Consensus 92 ~~g~~~~~~~~~~------------------~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~ 149 (489)
T PRK10207 92 AIGYFMTGMSLLK------------------PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFY 149 (489)
T ss_pred HHHHHHHHHhccc------------------hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHH
Confidence 9999999988632 22466899999999999999999999999987652 1678999999
Q ss_pred HHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeec--CCCCChhH--HHHHHH-----HHHHHh
Q 007816 164 LATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQ--QPGESPLV--RVAQVL-----VVAIKN 234 (588)
Q Consensus 164 ~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~-----~~~~~~ 234 (588)
+.+|+|.++||.+++++.++.|||+.|+++.+..++..+.+....+.++.. ++++++.. ...... ......
T Consensus 150 ~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~ 229 (489)
T PRK10207 150 MSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCA 229 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997766555555555554443332 12221111 110000 000000
Q ss_pred cCCCCCCCchhh-hhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHH
Q 007816 235 RKLSLPDNPEEL-YEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILM 313 (588)
Q Consensus 235 ~~~~~p~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (588)
...+........ ....... ...+.. .+ .+.+ ..+++|.+....++....++
T Consensus 230 ~~~~~~~~~~~~~~~~~~i~------------~~~f~~-----~~----------~~~~-~~~r~r~~~~~~l~~~~~~f 281 (489)
T PRK10207 230 WLMHNVEVANLVLIVLSIVV------------TIIFFR-----EA----------FKLD-KTGRNKMFVAFVLMLEAVVF 281 (489)
T ss_pred HHHhhhhHHHHHHHHHHHHH------------HHHHHH-----HH----------hcCC-HHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 0000000 000000 00 0001 12345566666666677888
Q ss_pred HHhhhhchhHHHHHhh-hcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHH
Q 007816 314 NTCLAQLQTFSITQGA-AMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSA 392 (588)
Q Consensus 314 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~ 392 (588)
+..+.|..+....+.. ..+....|..++++.++.+|++.+++..|+.+++.+++++|+. ..++..++.+|+++++
T Consensus 282 ~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~----~~~~~~k~~~G~~l~~ 357 (489)
T PRK10207 282 YILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGK----DLSMPMKFTLGMFLCS 357 (489)
T ss_pred HHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCC----CCCcHHHHHHHHHHHH
Confidence 8888888665554443 3444445667778888899999999999999988777766542 3578899999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHH
Q 007816 393 VSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSS 472 (588)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~ 472 (588)
++++.+....... ...+ ...+.+|+++.+++.+++|.+.+|..++++++.+|++++|.++|++++.+.+|+.++.
T Consensus 358 ~~~~~~~~~~~~~---~~~~--~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~ 432 (489)
T PRK10207 358 LGFLTAAAAGMWF---ADAQ--GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGG 432 (489)
T ss_pred HHHHHHHHHHHhh---cCCC--CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987665432111 1111 1357889999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 007816 473 AFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYK 531 (588)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~ 531 (588)
.+...... .. + ...+ ...+..+.++|..+++.+++..++++++.|..++.
T Consensus 433 ~l~~~~~~-~~----~--~~~~--~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 433 YVATFTAV-PD----N--ITDP--LETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred HHHHHhcc-cc----c--cccc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88765421 00 0 0000 00122466788888888888888777777665443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=322.86 Aligned_cols=451 Identities=14% Similarity=0.181 Sum_probs=329.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhc--cCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNE--MHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFG 80 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~ 80 (588)
-|||.+|.+++.+++||+++|++.++++.|++++ +|++..+++++.+.+.++..++++++|+++||++|||+++.++.
T Consensus 7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~ 86 (475)
T TIGR00924 7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGG 86 (475)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHH
Confidence 4899999999999999999999999999999988 99999999999999999999999999999999569999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 81 TLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 81 ~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
++..+|.++.++++ +.+.++++|++.|+|.|+..|+.+++++|++|++++ ..|++.++
T Consensus 87 ~~~~~g~~~~~~~~-------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~~~~ 144 (475)
T TIGR00924 87 IVLMLGHFMLAMSI-------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDGGFT 144 (475)
T ss_pred HHHHHHHHHHHhcc-------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccceeh
Confidence 99999999998875 345688999999999999999999999999986542 22888999
Q ss_pred HHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhH----HHHH---HHHH---
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLV----RVAQ---VLVV--- 230 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~--- 230 (588)
++|...|+|.++||.+++++.++.||++.|.++++..+++.+.++...+.+++.++++++.. +..+ .++.
T Consensus 145 ~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (475)
T TIGR00924 145 LFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALA 224 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999988999999999887766666666555544433222111110 0000 0000
Q ss_pred -HHHhc-CCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 007816 231 -AIKNR-KLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILA 308 (588)
Q Consensus 231 -~~~~~-~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (588)
..+.. .............. .... ...+... ... ++ +....++++..+.+.++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~---~~~~---------~~~~~~~--~~~------~~-----~~~~~~~~~~~~~l~l~~ 279 (475)
T TIGR00924 225 LVFFCAWLMHHVVIANILLMT---VTLA---------VIIFFFR--LAF------KP-----RLDAVARNKMYAYIVLFL 279 (475)
T ss_pred HHHHHHHHHhccHHHHHHHHH---HHHH---------HHHHHHH--HHH------hc-----cCCHHHHhHHHHHHHHHH
Confidence 00000 00000000000000 0000 0000000 000 00 011123344455677778
Q ss_pred HHHHHHHhhhhchhHHHH-HhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHH
Q 007816 309 STILMNTCLAQLQTFSIT-QGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIG 387 (588)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G 387 (588)
...++++.+.|..+.+.. +...++.+..++.++++.++.+|++.+++..|+++++..++.||. ++.+...++.+|
T Consensus 280 ~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~----~~~~~~~k~~~G 355 (475)
T TIGR00924 280 EAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG----KDPTTPLKFTLG 355 (475)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC----CCCCcHHHHHHH
Confidence 888889999998886543 334455555567788999999999999999999998755555542 234677789999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHH
Q 007816 388 LVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFG 467 (588)
Q Consensus 388 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~ 467 (588)
+++++++++.+++.... .. ...+.+++|+++.+++.+++|.+..|..++++++++|++.||+++|++.+...+|
T Consensus 356 ~~l~~~~~~~~~~~~~~----~~--~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g 429 (475)
T TIGR00924 356 MLFCGASFLTFAASIWF----AD--AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMG 429 (475)
T ss_pred HHHHHHHHHHHHHHHhh----cC--CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999999888765211 11 1125789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007816 468 YFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYK 529 (588)
Q Consensus 468 ~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~ 529 (588)
+.+++.+.+.... ..++.++|...++++++..+++++..|..+
T Consensus 430 ~~l~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 430 SLLGGYLATFGAV-------------------PQGVTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHHHHHHHhc-------------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888775422 112344677777777777777777666543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=305.58 Aligned_cols=466 Identities=14% Similarity=0.182 Sum_probs=327.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhccc-chhHHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFL-SRFATCLIFGTL 82 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~-GRr~~i~i~~~i 82 (588)
|||.+|.+++.+++|++++|++.+.++.|+++++|+++.+++.+.+.+.+...++++++|+++|| + ||||++.++.++
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDR-ilGrrr~iliG~il 85 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADK-VLGNRMAVMLGALL 85 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999 7 999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..+|.++++.... +...++++..+.++|.|...++.+++++|++|+++++ |++.++++
T Consensus 86 ~~lg~lll~~~~~------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~ 143 (493)
T PRK15462 86 MAIGHVVLGASEI------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLM 143 (493)
T ss_pred HHHHHHHHHHhhc------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHH
Confidence 9999987765421 1223566667777889999999999999999976422 88999999
Q ss_pred HHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCC-CCChhH--HHHHHHHH--HHHhcCC
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQP-GESPLV--RVAQVLVV--AIKNRKL 237 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~--~~~~~~~ 237 (588)
|...|+|+.++|.+++++.+..||++.|.++++.++++.+.++...+++.+..+ ++++.. ........ ..---
T Consensus 144 Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 221 (493)
T PRK15462 144 YAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLV-- 221 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHH--
Confidence 999999999999999999988999999999877776666666655554433211 111110 00000000 00000
Q ss_pred CCCCCchhhhhhhhhhhcccc-cccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 007816 238 SLPDNPEELYEINEKERASTW-ERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTC 316 (588)
Q Consensus 238 ~~p~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (588)
-. + .+......+..... ......-...++- .+.. .....++++|+...+.++.+..+||..
T Consensus 222 ~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------------~~~~~~er~r~~~~~~l~~~~~~Fw~~ 283 (493)
T PRK15462 222 AT---P-ALITVLFWKEWSVYALIVATIIGLGVLA--KIYR------------KAENQKQRKELGLIVTLTFFSMLFWAF 283 (493)
T ss_pred HH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH------------hcCCHHHHhhHHHHHHHHHHHHHHHHH
Confidence 00 0 00000000000000 0000000000000 0000 001235678888999999999999999
Q ss_pred hhhchhHHHHHh-hhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHH
Q 007816 317 LAQLQTFSITQG-AAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSM 395 (588)
Q Consensus 317 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~ 395 (588)
+.|.++...... ...+.++.|+.++++.++.+|++.+++.+|+..++..++.||. +.++...++.+|++++++++
T Consensus 284 ~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~----~~~s~~~Kfa~g~~~~g~~f 359 (493)
T PRK15462 284 AQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGN----RTVRIWGKFALGLGLMSAGF 359 (493)
T ss_pred HHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC----CCCCcHHHHHHHHHHHHHHH
Confidence 999988665443 5566777788899999999999999999999998865554332 23578889999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHH-HHHHHHHHHH
Q 007816 396 TVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSL-SFGYFLSSAF 474 (588)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~-~l~~~i~~~~ 474 (588)
+++.+.... ...++ .++.+|++..+++.+++|.+..|...+++.+++|++.||+.+|++.+.. .+++.+++.+
T Consensus 360 ~~l~~~~~~----~~~~~--~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~ 433 (493)
T PRK15462 360 CILTLSARW----SAMYG--HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVI 433 (493)
T ss_pred HHHHHHHhh----cCCCC--CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888765422 11111 3788999999999999999999999999999999999999999998744 6888888777
Q ss_pred HHHhhhhhcccCCCCCCCccCCC--CCCcchHHHHHHHHHHHHHH--HHHHHHhhcccccc
Q 007816 475 VDIINAVTKRITPSKQGWLHGKD--INKNNVNLFYWFLAIVSVLN--LVLYLYAAAWYKYK 531 (588)
Q Consensus 475 ~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~~f~~~a~~~~~~--~v~~~~~~~e~~~~ 531 (588)
........ -.++.+ -+..++..+|...+.+.++. ++++.+.++..|.|
T Consensus 434 ~~~~~~~~---------~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (493)
T PRK15462 434 ADQTSQAS---------FDASGAINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFR 485 (493)
T ss_pred HHHhcccc---------CCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66542100 000000 01224666787777766554 44444555554444
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=311.10 Aligned_cols=456 Identities=13% Similarity=0.197 Sum_probs=324.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 83 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~ 83 (588)
|+|++|.+++.+++||+++|++.++++.|+++++|++..+++++.+.+........+++|+++||++|||+++.++.++.
T Consensus 19 ~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~ 98 (500)
T PRK09584 19 QPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVL 98 (500)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999888878888899999999339999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007816 84 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 163 (588)
Q Consensus 84 ~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~ 163 (588)
.+|.++++++++ +.+.++++|+++|+|.|...+...++++|++|++++ .|++.++++|
T Consensus 99 ~ig~~l~~~~~~------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~ 156 (500)
T PRK09584 99 AIGYALVAWSGH------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYY 156 (500)
T ss_pred HHHHHHHHHhcc------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHH
Confidence 999999988642 345678899999999999999999999999986542 1567899999
Q ss_pred HHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeec--CCCCChhH--HH----HHHHHHH-HHh
Q 007816 164 LATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQ--QPGESPLV--RV----AQVLVVA-IKN 234 (588)
Q Consensus 164 ~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~----~~~~~~~-~~~ 234 (588)
++.|+|..+||.+++++.++.|||+.|.++++..+++.+.++...+.+++. +++.++.. .. ....... ...
T Consensus 157 ~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (500)
T PRK09584 157 MSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIAT 236 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877666665554444333322 12111111 10 0000000 000
Q ss_pred cCCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 007816 235 RKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMN 314 (588)
Q Consensus 235 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (588)
.....++.......... ....... ++...+....++++.+..+.++.....+|
T Consensus 237 ~~~~~~~~~~~~~~~~~--------------~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~i~f~ 289 (500)
T PRK09584 237 WLLHNQEIARMALGVVA--------------LGIVVIF-------------GKEAFAMKGAARRKMIVAFILMLEAIIFF 289 (500)
T ss_pred HHHhcchHHHHHHHHHH--------------HHHHHHH-------------HHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000000 0000000 00000011234556666667777788889
Q ss_pred HhhhhchhHHHHHhhh-cCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHH
Q 007816 315 TCLAQLQTFSITQGAA-MDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAV 393 (588)
Q Consensus 315 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~ 393 (588)
..+.|.++.+..+... .+.+..+..++++.++.+|++.+++.+|+.+++..++++| .+...++.+|++++++
T Consensus 290 ~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l 362 (500)
T PRK09584 290 VLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSG 362 (500)
T ss_pred HHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHH
Confidence 9999998887766533 4445556678888999999999999999998875444444 2567889999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHH
Q 007816 394 SMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSA 473 (588)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~ 473 (588)
+++++...... ..+. ...+.+|+++.+++.+++|++..|...+++.+.+|+++||+++|++.+...+++.++..
T Consensus 363 ~f~~l~~~~~~----~~~~--~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~ 436 (500)
T PRK09584 363 AFLVLPLGAKF----ANDA--GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGY 436 (500)
T ss_pred HHHHHHHHHHh----cCCC--CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988765321 1111 24678899999999999999999999999999999999999999999999999999888
Q ss_pred HHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007816 474 FVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKY 530 (588)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~ 530 (588)
+...... . . -..+.....+++..+|..+++++++..++.+...|..++
T Consensus 437 ~~~~~~~--~---~----~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 437 VANLMAV--P---D----NVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR 484 (500)
T ss_pred HHHHhcc--c---c----ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7753310 0 0 000000111246778888888877777666666665544
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=291.55 Aligned_cols=401 Identities=13% Similarity=0.084 Sum_probs=297.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHH
Q 007816 44 ASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLY 123 (588)
Q Consensus 44 ~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 123 (588)
-+.+++++.+|.++|++++|+++|+ +|||.+++++.++.+++++++.++...+ .+.++++||+
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~~----------------~~e~li~GR~ 124 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSAP----------------SFEMLILGRL 124 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHhh----------------hHHHHHHHHH
Confidence 4778899999999999999999999 9999999999999999999998886543 6779999999
Q ss_pred HHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhh--heeccccchhHHHHHHHHHHHHHH
Q 007816 124 LYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGI--VYVFTEKSWWLGFLVSSVANFIGL 201 (588)
Q Consensus 124 l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~--~~i~~~~~w~~~f~i~~~~~~~~~ 201 (588)
+.|+..|......|.|++|++|.+. ||.+-...++++++|.++|..++ ..+.+.-.|++.+.++.++.++..
T Consensus 125 i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l 198 (485)
T KOG0569|consen 125 IVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL 198 (485)
T ss_pred HHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888 99999999999999999997665 344456679999999988866666
Q ss_pred HHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhh-hhhhhhcccc-cccCCCc-chhhhh--hhccC
Q 007816 202 IALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYE-INEKERASTW-ERIPHAN-QFRCLD--KAAIM 276 (588)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~-~~~~~~~~~~-~~~~~~~-~~~~~~--~~~~~ 276 (588)
+++.+ +||||+++.. +++.++|.+. +.++..+ .....+ ..+++
T Consensus 199 ~~l~~--------------------------------~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~ 246 (485)
T KOG0569|consen 199 ALLPF--------------------------------LPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIE 246 (485)
T ss_pred HHHhc--------------------------------CCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 65543 6777777766 5666666655 3222111 111111 11111
Q ss_pred CCCCC--CCCCcc-cccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHhhhcCCCCCcccccCCcccchhHHHH
Q 007816 277 PKDSA--VAAPWR-VCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFM 353 (588)
Q Consensus 277 ~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 353 (588)
.+... ++.+++ .+++ ...++.++..+.+...+++.+++...+|+..++...++..... ...+...+.++.+..
T Consensus 247 ~~~~~~~~~~sl~~~~~~--~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a--~~an~~~g~v~~~~t 322 (485)
T KOG0569|consen 247 EEELEKKKQISLRQLLKN--PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEA--QYANLGIGIVNLLST 322 (485)
T ss_pred HhccccccCCcHHHHhcC--cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHH
Confidence 11111 222222 2221 1224445556666777888888888888888887767654411 344556677777788
Q ss_pred HHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHH
Q 007816 354 SILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIAD 433 (588)
Q Consensus 354 ~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (588)
+++..++|++ |||+. +.++..++.+..+++........... ...++..+...+.+.....
T Consensus 323 ~~~~~lid~~----gRRpL-----------ll~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~y~~i~~~~~~~~~f~ 382 (485)
T KOG0569|consen 323 LVSPFLIDRL----GRRPL-----------LLISLSLMAVALLLMSIALFLSNSFG-----SWLSYLCIAAIFLFIISFA 382 (485)
T ss_pred HHHHHHHHhc----CCcHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHhhh
Confidence 8888887777 87764 56777777777776666543322111 1233334555566667777
Q ss_pred HHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHH
Q 007816 434 MFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIV 513 (588)
Q Consensus 434 ~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~ 513 (588)
....|..|-+.+|++|++.|+.++++..+.+|+.+++.....|.+++..+. ++|+.|.+.
T Consensus 383 ~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--------------------~~filF~i~ 442 (485)
T KOG0569|consen 383 IGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--------------------YVFILFVIP 442 (485)
T ss_pred cCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------hhhHHHHHH
Confidence 788999999999999999999999999999999999999999998764431 469999999
Q ss_pred HHHHHHHHHHhhcccccccCCCCCCCCCCC
Q 007816 514 SVLNLVLYLYAAAWYKYKPENCSDIKPKPL 543 (588)
Q Consensus 514 ~~~~~v~~~~~~~e~~~~~le~~~~~~~~~ 543 (588)
+++..+..|+..||||||+.+|+.++++++
T Consensus 443 ~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 443 LAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 999999999999999999998887766544
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=296.92 Aligned_cols=422 Identities=14% Similarity=0.083 Sum_probs=298.3
Q ss_pred HHhHHHHHHHchhc-----cCCCh--hhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhc
Q 007816 23 IANGISMVLYFKNE-----MHFDL--AGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAY 95 (588)
Q Consensus 23 ~~v~~~~~~~~~~~-----l~~~~--~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~ 95 (588)
.+..+.+..+++++ ...+. .+.+++.+++.+++.++++++|+++|+ +|||++++++.+++.+|++++++++
T Consensus 63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~- 140 (513)
T KOG0254|consen 63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAP- 140 (513)
T ss_pred cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhh-
Confidence 36677777777653 22222 345899999999999999999999999 9999999999999999999999998
Q ss_pred cccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhh
Q 007816 96 SKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVT 175 (588)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~ 175 (588)
+..++++||+++|+|.|+....+|.|++|++|++. ||.+.+.+++++++|.++++.
T Consensus 141 ------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~ 196 (513)
T KOG0254|consen 141 ------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYC 196 (513)
T ss_pred ------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999888 999999999999999999976
Q ss_pred hhheeccc-cchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhh
Q 007816 176 GIVYVFTE-KSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKER 254 (588)
Q Consensus 176 ~~~~i~~~-~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 254 (588)
++....+. ++||.++.+..+..++..+.+++ .||+|+|+.++++.++
T Consensus 197 ~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~--------------------------------~pesp~~L~~~g~~~~ 244 (513)
T KOG0254|consen 197 INYGTSKVYAGWRIPLGLALIPAVILALGMLF--------------------------------LPESPRWLIEKGRLEE 244 (513)
T ss_pred HhhhhccCCccHHHHHHHHHHHHHHHHHHHHh--------------------------------CCCChHHHHHcCChHH
Confidence 66665543 59998888877765444444332 4455555555544444
Q ss_pred cccc-cccC---CCcchhhhhhhcc----CCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHH
Q 007816 255 ASTW-ERIP---HANQFRCLDKAAI----MPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSIT 326 (588)
Q Consensus 255 ~~~~-~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 326 (588)
+.+. ..+. ..+.....+..+. .......+..|+++.. ...+|+.+....+..+++.++.+...+|+..++
T Consensus 245 a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if 322 (513)
T KOG0254|consen 245 AKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIF 322 (513)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHH
Confidence 4433 1111 1111111110000 0000001112333222 234567777788888999988888888888877
Q ss_pred HhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007816 327 QGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRR 406 (588)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 406 (588)
+..+...+. .........++.++++++..++|++ |||+. +..|.+.+.+++++.+.......
T Consensus 323 ~~~g~~~~~---~~~~~~~~~v~~~~t~~~~~lvd~~----gRr~l-----------ll~s~~~m~~~~~~~~~~~~~~~ 384 (513)
T KOG0254|consen 323 KSAGLKSDT---FLASIILGVVNFLGTLVATYLVDRF----GRRKL-----------LLFGAAGMSICLVILAVVGVFAL 384 (513)
T ss_pred HhcCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHh----ccHHH-----------HHHhHHHHHHHHHHHHHHHHHhc
Confidence 776665431 2333445566666666666776666 88764 67888888888888877643321
Q ss_pred hhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q 007816 407 NAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRIT 486 (588)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 486 (588)
.... .........+....++.......+.+..|.+..|++|.+.|+++.++....+|+.+++.....+.......
T Consensus 385 ~~~~--~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~--- 459 (513)
T KOG0254|consen 385 YYPN--SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG--- 459 (513)
T ss_pred cCCC--cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 1110 01123344455556666777777889999999999999999999999999999999999877776543110
Q ss_pred CCCCCCccCCCCCCcchHHHHHHHHHHHHHHHH-HHHHhhcccccccCCCCCCCCCCC
Q 007816 487 PSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLV-LYLYAAAWYKYKPENCSDIKPKPL 543 (588)
Q Consensus 487 ~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v-~~~~~~~e~~~~~le~~~~~~~~~ 543 (588)
....|..+++++.+... +++++.||||++++||++..+.++
T Consensus 460 ----------------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 460 ----------------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred ----------------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 12357777877788777 788999999999999999877544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=280.41 Aligned_cols=418 Identities=11% Similarity=0.007 Sum_probs=240.7
Q ss_pred cCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHH
Q 007816 37 MHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAA 116 (588)
Q Consensus 37 l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 116 (588)
.+.++.+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..+++++++++++... ..+.+
T Consensus 51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~v~~~~~~~~~~~~~-------------~~~~~ 116 (502)
T TIGR00887 51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMIIATVASGLSPGSSP-------------KSVMA 116 (502)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHccCccc-------------chHHH
Confidence 34567788999999999999999999999999 89999999999999999999888753110 11367
Q ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheec---------------
Q 007816 117 YFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVF--------------- 181 (588)
Q Consensus 117 ~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~--------------- 181 (588)
.++++|+++|+|.|+..+..++|++|.+|+++ |++.+++.+....+|..+++.++..+.
T Consensus 117 ~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 190 (502)
T TIGR00887 117 TLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEAS 190 (502)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 89999999999999999999999999999888 999999999999999998887765331
Q ss_pred --------cccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhh
Q 007816 182 --------TEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKE 253 (588)
Q Consensus 182 --------~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 253 (588)
.+++||++|.+.+++.++..+..++ .||+|+|+.++++++
T Consensus 191 ~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~--------------------------------lpESpr~l~~~~~~~ 238 (502)
T TIGR00887 191 CTGSCVPAVDYMWRILIGFGAVPALLALYFRLT--------------------------------IPETPRYTADVAKDV 238 (502)
T ss_pred ccccccchhcccHHHHHHHHHHHHHHHHHHHHh--------------------------------CCCCHHHHHHhCcch
Confidence 1358999998887765544443221 455666655444332
Q ss_pred h-cccc-cccCCCcchhhhh-hhccCCCCCCCCCCcccccccc--hHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHh
Q 007816 254 R-ASTW-ERIPHANQFRCLD-KAAIMPKDSAVAAPWRVCTVTQ--VEEVKILTRMMPILASTILMNTCLAQLQTFSITQG 328 (588)
Q Consensus 254 ~-~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 328 (588)
+ +.+. .+....+.....+ ..+.+.+.+..+.+|+++.+.. .+..++.+......+.+.+.+....++.+.+ .+.
T Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i-~~~ 317 (502)
T TIGR00887 239 EQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVI-LSA 317 (502)
T ss_pred HHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHH-HHH
Confidence 1 1111 1100000000000 0000000000112343221110 0111111111111111111111111112222 233
Q ss_pred hhcCCCCCccc----c--cCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 007816 329 AAMDPHLGSIK----V--PTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVE 402 (588)
Q Consensus 329 ~~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~ 402 (588)
.+++....+.. . ..........++.+++.++...+.++++||+. +.++..++++++.+.+...
T Consensus 318 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~-----------l~~~~~~~~~~~~~l~~~~ 386 (502)
T TIGR00887 318 IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPI-----------QLMGFFILTVLFFVLGFAY 386 (502)
T ss_pred HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhH-----------HHHHHHHHHHHHHHHHHHH
Confidence 34332210000 0 00001122222333333444444444577753 4456666666665555431
Q ss_pred HHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007816 403 VIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVT 482 (588)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 482 (588)
.. . ... ..+....++..++.....+..+.+..|++|++.|+++.|+.+..+++++++++.+.+.+.+..
T Consensus 387 ~~----~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 455 (502)
T TIGR00887 387 NH----L------STH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG 455 (502)
T ss_pred Hh----c------chh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence 10 0 001 111221122222333455667888899999999999999999999999999999998774421
Q ss_pred cccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCC
Q 007816 483 KRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENCSDIK 539 (588)
Q Consensus 483 ~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~le~~~~~ 539 (588)
+. +.|+.. ..++...|++++++++++.+++ ++.||||++++||+|.+
T Consensus 456 ~~----~~~~~~-----~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 456 DP----TKGYPT-----GIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSGE 502 (502)
T ss_pred cc----cccccc-----cccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhCC
Confidence 10 000100 0123446888888888876654 67799999999998753
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=269.34 Aligned_cols=333 Identities=22% Similarity=0.371 Sum_probs=271.9
Q ss_pred HHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccC
Q 007816 20 MGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNL 99 (588)
Q Consensus 20 ~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~ 99 (588)
++|||+.+++..|+++.+|++.+++..+...+...+.+.++++|+++|+++||+++++++.++..+|.++.+++...+..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999886432110
Q ss_pred CCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhhe
Q 007816 100 HPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVY 179 (588)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~ 179 (588)
++.+...++++..+..+|.|++.|+..++++|++++++ ++.|.+.++++|+++|+|+++++.+.++
T Consensus 81 -----------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i~~~ 146 (654)
T TIGR00926 81 -----------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTIITPI 146 (654)
T ss_pred -----------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234557889999999999999999999999998654 3448899999999999999999999888
Q ss_pred eccc-------cchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhh
Q 007816 180 VFTE-------KSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEK 252 (588)
Q Consensus 180 i~~~-------~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 252 (588)
+.++ .+|...|.++++.++++++++....+++++.++.++....+.++++.+.+++....++. +
T Consensus 147 l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~--~------- 217 (654)
T TIGR00926 147 LRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH--W------- 217 (654)
T ss_pred HHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc--c-------
Confidence 8743 36999999999999999999988888887777777777777777776665432211110 0
Q ss_pred hhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHhhhcC
Q 007816 253 ERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQGAAMD 332 (588)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (588)
...+.|.+.... .++.++++|++++.++++...+++|..+.|..+.+..|...++
T Consensus 218 -------------~~~~ld~a~~~~------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~ 272 (654)
T TIGR00926 218 -------------PLHWLDYAKDKH------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMD 272 (654)
T ss_pred -------------chhHHHHhcccc------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhc
Confidence 011222221111 1235677899999999999999999999999999999988887
Q ss_pred CCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 007816 333 PHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEV 403 (588)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~ 403 (588)
.+++++.+++..++.++++.+++..|+.++.++|..+|... ..+++.++.+|+++++++++++...+.
T Consensus 273 ~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ve~ 340 (654)
T TIGR00926 273 GDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAALVQL 340 (654)
T ss_pred CccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77667778899999999999999999999888887766532 368899999999999999998877664
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=270.65 Aligned_cols=154 Identities=12% Similarity=0.081 Sum_probs=133.4
Q ss_pred HhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007816 24 ANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPD 103 (588)
Q Consensus 24 ~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~ 103 (588)
.+++.+.+++.+++|++..+.+++.+++.++..++++++|+++|| +|||+++++++++..++++++++++
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~--------- 253 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQ--------- 253 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 346667788889999999999999999999999999999999999 9999999999999999999999886
Q ss_pred CCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheecc-
Q 007816 104 CGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFT- 182 (588)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~- 182 (588)
+++.++++|+++|+|.|+..++.+++++|.+|++. |++.+++...+..+|.++++.++..+..
T Consensus 254 ----------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~ 317 (742)
T TIGR01299 254 ----------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPH 317 (742)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999777 9999999999999999988876543321
Q ss_pred ------------ccchhHHHHHHHHHHHHHHHH
Q 007816 183 ------------EKSWWLGFLVSSVANFIGLIA 203 (588)
Q Consensus 183 ------------~~~w~~~f~i~~~~~~~~~~~ 203 (588)
..+||+.|++.+++.++.+++
T Consensus 318 ~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~ 350 (742)
T TIGR01299 318 YGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA 350 (742)
T ss_pred ccchhccccccccccHHHHHHHHHHHHHHHHHH
Confidence 247999998887765554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=268.85 Aligned_cols=410 Identities=12% Similarity=0.050 Sum_probs=237.1
Q ss_pred cCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccc-cCCCCCCCCCCcCCchhH
Q 007816 37 MHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSK-NLHPPDCGKSSCLKGAIA 115 (588)
Q Consensus 37 l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~-~~~~~~~~~~~~~~~~~~ 115 (588)
++.+..+.+++.+++.++..++++++|+++|| +|||++++++.+++.+++++++++...- .... +.....
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~--------~~~~~~ 120 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFTSIGP--------DNTGYV 120 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhccccccccc--------cchhHH
Confidence 38899999999999999999999999999999 9999999999999999998888752100 0000 001246
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheec--------cccchh
Q 007816 116 AYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVF--------TEKSWW 187 (588)
Q Consensus 116 ~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~--------~~~~w~ 187 (588)
..++++|+++|+|.|...+..+++++|++|+++ |++++++......+|.++++.+++.+. ...+||
T Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr 194 (479)
T PRK10077 121 PEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWR 194 (479)
T ss_pred HHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChH
Confidence 678999999999999999999999999999887 999999999999999999887655432 457999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhcccc-cccCC-Cc
Q 007816 188 LGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTW-ERIPH-AN 265 (588)
Q Consensus 188 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~-~~~~~-~~ 265 (588)
+.|++..++.++..+..++ .|+. |+++.++++.+++.+. ++... .+
T Consensus 195 ~~f~~~~~~~~~~~~~~~~-l~~s-------------------------------~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (479)
T PRK10077 195 YMFASEAIPALLFLMLLYF-VPET-------------------------------PRYLMSRGKQEQAEGILRKIMGNTL 242 (479)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCC-------------------------------cHHHHHcCCHHHHHHHHHHHcCChh
Confidence 9999987776555443332 3321 1111110000000000 00000 00
Q ss_pred chhhhhhh--ccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHhhhcCCCCCcccccCC
Q 007816 266 QFRCLDKA--AIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTS 343 (588)
Q Consensus 266 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (588)
.....+.. ....+.. ..+..+. . ..........+..+++........++...+.+..+.+.. ...
T Consensus 243 ~~~~~~~~~~~~~~~~~---~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~------~~~ 309 (479)
T PRK10077 243 ATQALQEIKHSLDHGRK---TGGKLLM---F-GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTD------IAL 309 (479)
T ss_pred HHHHHHHHHHHHHHhhh---hhhhhcc---h-hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCc------hHH
Confidence 00000000 0000000 0000000 0 000000000000111111111111222222222222211 111
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHH
Q 007816 344 SIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLS 423 (588)
Q Consensus 344 ~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (588)
.......+..++..++..++.++++||.. +..+.++++++++++...... ..... +..
T Consensus 310 ~~~~~~~~~~~i~~~~~g~l~dr~g~r~~-----------~i~~~~~~~v~~~~l~~~~~~----------~~~~~-~~~ 367 (479)
T PRK10077 310 LQTIIVGVINLTFTVLAIMTVDKFGRKPL-----------QIIGALGMAIGMFSLGTAFYT----------QAPGI-VAL 367 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHH-----------HHHhHHHHHHHHHHHHHHHhc----------CcccH-HHH
Confidence 12222333334444455455444466543 567777777777666543110 01111 222
Q ss_pred HHHHHHHHHHH-HHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcc
Q 007816 424 FQYCIFGIADM-FTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNN 502 (588)
Q Consensus 424 ~~~~~~~~~~~-~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 502 (588)
...++.+.+.. .+.|..+.++.|.+|++.|++++|+....+++++++++.+.|.+.+ .+|..+ ..+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~---------~~~~~~----~~~ 434 (479)
T PRK10077 368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDK---------NSWLVA----HFH 434 (479)
T ss_pred HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh---------ccchhh----hcc
Confidence 22222233322 2347778999999999999999999999999999999988886531 112211 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCC
Q 007816 503 VNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENCSDIKPK 541 (588)
Q Consensus 503 ~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~le~~~~~~~ 541 (588)
....|++++++++++.++.+++.||+|++++||++++++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 473 (479)
T PRK10077 435 NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE 473 (479)
T ss_pred CccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHh
Confidence 223577888888888888888899999999888776654
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=247.82 Aligned_cols=174 Identities=12% Similarity=0.032 Sum_probs=133.7
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhh-HHH-----HHHHHHHHHHHHhhhhHHhhhcccchhHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAG-ASN-----TLTNFFGSTFLLCLVGGFISDTFLSRFATCLIF 79 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~-----i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~ 79 (588)
+.++...+..+++.+.+. +.+...+++.++++.+..+ .++ +.++..++..+++++.|+++|| +|||+++.++
T Consensus 16 ~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~ 93 (490)
T PRK10642 16 KAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAIT 93 (490)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHH
Confidence 345556677777776655 5667778888888644322 222 2466778899999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
.+++.+++++++++++..++. ......+++.|+++|+|.|+..+...++++|.+|+++ ||++.
T Consensus 94 ~~l~~i~~~~~a~~~~~~~~g-----------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~ 156 (490)
T PRK10642 94 IVIMSISTFCIGLIPSYATIG-----------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMG 156 (490)
T ss_pred HHHHHHHHHHHHhcccHHHHH-----------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHH
Confidence 999999999999997533100 0001248999999999999999999999999999888 99999
Q ss_pred HHHHHHHHHHHHHHhhhhhee----c----cccchhHHHHHHHHHHH
Q 007816 160 NFYLLATTVAAVIGVTGIVYV----F----TEKSWWLGFLVSSVANF 198 (588)
Q Consensus 160 ~~~~~~~~iG~~ig~~~~~~i----~----~~~~w~~~f~i~~~~~~ 198 (588)
++.....++|..+|+.+...+ . .++|||++|++.+++.+
T Consensus 157 ~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 157 SWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 999888888888877554322 1 25799999999766544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-32 Score=293.04 Aligned_cols=400 Identities=15% Similarity=0.129 Sum_probs=260.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHH
Q 007816 42 AGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGS 121 (588)
Q Consensus 42 ~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 121 (588)
.+.+++.++..+|..+|++++|+++|| +|||++++++.++.++|+++.+++++. .+++.+.++
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~ 108 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPSY----------------NNFWMLLIG 108 (451)
T ss_pred HHHHHHHHHHHhhhccccccccccccc-ccccccccccccccccccccccccccc----------------ccccccccc
Confidence 457899999999999999999999999 899999999999999999999999732 145679999
Q ss_pred HHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheecc---ccchhHHHHHHHHHHH
Q 007816 122 LYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFT---EKSWWLGFLVSSVANF 198 (588)
Q Consensus 122 R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~---~~~w~~~f~i~~~~~~ 198 (588)
|+++|+|.|+..+..+.|+.|..|++. |++..++.+....+|..++..++..+.. +.+||+.+.++.++.+
T Consensus 109 R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l 182 (451)
T PF00083_consen 109 RFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSL 182 (451)
T ss_pred ccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999888 9999999999999999998776654433 3469999998887754
Q ss_pred HHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhcccc-cccCCCcc--hhhhhhhcc
Q 007816 199 IGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTW-ERIPHANQ--FRCLDKAAI 275 (588)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~ 275 (588)
+..+..++ .||||+|+..+++.++|.+. ++.+..+. .+..+..+.
T Consensus 183 ~~~~~~~~--------------------------------~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 230 (451)
T PF00083_consen 183 LVLLLRFF--------------------------------LPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAE 230 (451)
T ss_pred cccccccc--------------------------------cccccceecccccccccccccccccccccccccccccccc
Confidence 33332221 67777777777766666655 33221110 001110000
Q ss_pred CCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHhhhcCCCCCcccccCCcccchhHHHHHH
Q 007816 276 MPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSI 355 (588)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 355 (588)
..+.+..+..|+.+.+.+. .+++.+..+.+...+...+.....++...+.+..+.+.. ...+........++.++
T Consensus 231 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~ 305 (451)
T PF00083_consen 231 KKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS----FLATLILGLVNFLGTLL 305 (451)
T ss_pred cccccccceeeeecccccc-ccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccc
Confidence 0010011133543332211 233444334444444333333333333333333333222 12233344455555555
Q ss_pred HHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHH
Q 007816 356 LLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMF 435 (588)
Q Consensus 356 ~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (588)
..+++|++ |||+. +..+.++++++++.++...... .+.........+....++.......
T Consensus 306 ~~~~~~~~----GRr~~-----------~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~l~~~~~~~g 365 (451)
T PF00083_consen 306 AIFLIDRF----GRRKL-----------LIIGLLLMAICSLILGIIFFLG-----VSSSSWWSILSIVFLALFFAFFSLG 365 (451)
T ss_pred cccccccc----ccccc-----------cccccccccccccccccccccc-----cccccccccccceeeeecccccccc
Confidence 55666665 87754 3466666666666554110000 0000011222222222333445556
Q ss_pred HhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHH
Q 007816 436 TFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSV 515 (588)
Q Consensus 436 ~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~ 515 (588)
+.+..+.+..|.+|++.|+++.++....+++++++++.+.+.+.+.. + ...+|++++++++
T Consensus 366 ~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~--------~-----------~~~~~~i~~~~~~ 426 (451)
T PF00083_consen 366 WGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL--------G-----------GWGVFLIFAGVCL 426 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc--------c-----------ccccchhhHHHHH
Confidence 77888899999999999999999999999999999988877653311 1 1225788888889
Q ss_pred HHHHHHHHhhcccccccCCCCCCCC
Q 007816 516 LNLVLYLYAAAWYKYKPENCSDIKP 540 (588)
Q Consensus 516 ~~~v~~~~~~~e~~~~~le~~~~~~ 540 (588)
+..++.+++.||||++++||++++|
T Consensus 427 i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 427 IAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred HHHhheeEEEeeCCCCCHHHHHhhC
Confidence 9999999999999999999998764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-25 Score=231.49 Aligned_cols=371 Identities=13% Similarity=0.021 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 87 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~ 87 (588)
++.+.+..++.....+ +...+.+.+.+++|.|+.+.+++.+.+.++..+++++.|+++|| +|||+.+..+..+..+++
T Consensus 11 ~~~l~~~~~~~~~~~~-~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~ 88 (390)
T PRK03545 11 VVTLALAAFIFNTTEF-VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFIASH 88 (390)
T ss_pred HHHHHHHHHHHHhHHH-HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHH
Confidence 4555555555444444 34445577889999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHH
Q 007816 88 VMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATT 167 (588)
Q Consensus 88 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~ 167 (588)
+++++++ +++.++++|+++|++.+...+...+++.|.+|+++ |+++++++....+
T Consensus 89 ~~~~~~~-------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~ 143 (390)
T PRK03545 89 VLSALAW-------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTA 143 (390)
T ss_pred HHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHH
Confidence 9999886 66789999999999999999999999999999877 9999999999999
Q ss_pred HHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 007816 168 VAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELY 247 (588)
Q Consensus 168 iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 247 (588)
+|..++|.+++.+.+..|||+.|++.+++.++..++.+...|+.++ +++++. +...
T Consensus 144 ~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~----------------------~~~~ 199 (390)
T PRK03545 144 LAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS--EHSGSL----------------------KSLP 199 (390)
T ss_pred HHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCcchH----------------------HHHH
Confidence 9999999999998888999999999887765555444333332100 000000 0000
Q ss_pred hhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHH
Q 007816 248 EINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQ 327 (588)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 327 (588)
+ ..+ .+.....................+...+...
T Consensus 200 ~--------------------------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (390)
T PRK03545 200 L--------------------------------------------LFR-RPALVSLYLLTVVVVTAHFTAYSYIEPFVQQ 234 (390)
T ss_pred H--------------------------------------------HHh-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 0111111111111111111111111222222
Q ss_pred hhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007816 328 GAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRN 407 (588)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 407 (588)
..+.+.. ..+.......++.+++.++..++.++.+|| .+..+..++.+++......
T Consensus 235 ~~g~s~~------~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~------------~~~~~~~~~~~~~~~l~~~------ 290 (390)
T PRK03545 235 VAGLSEN------FATLLLLLFGGAGIIGSVLFSRLGNRHPSG------------FLLIAIALLLVCLLLLLPA------ 290 (390)
T ss_pred hcCCCcc------HHHHHHHHHHHHHHHHHHHHHHHhhccchh------------HHHHHHHHHHHHHHHHHHH------
Confidence 1222211 112222333445555556656553333322 1344544444444333222
Q ss_pred hccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC
Q 007816 408 AFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITP 487 (588)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 487 (588)
..+.+.+.+..++.+++.....+.......+..|+ .|++++|+.+....++..+++.+.+.+.+.
T Consensus 291 --------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~------ 355 (390)
T PRK03545 291 --------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLH------ 355 (390)
T ss_pred --------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 12334444556666777777777778888888874 789999999988999999999998887541
Q ss_pred CCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Q 007816 488 SKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAA 526 (588)
Q Consensus 488 ~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~ 526 (588)
-++...|++.+.+.+++++++++..+
T Consensus 356 -------------~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 356 -------------LGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred -------------cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 13345688888888888777766553
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-26 Score=243.04 Aligned_cols=409 Identities=13% Similarity=0.082 Sum_probs=235.4
Q ss_pred CChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHH
Q 007816 39 FDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYF 118 (588)
Q Consensus 39 ~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 118 (588)
.+..+.+++.+++.++..++.++.|+++|| +|||+++.++.+++.++.+++.++.+.. +.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 130 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAFAL----------------SVEML 130 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhcccc----------------chHHH
Confidence 338999999999999999999999999999 9999999999999999999997765321 45689
Q ss_pred HHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhh---heeccccchhHHHHHHHH
Q 007816 119 YGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGI---VYVFTEKSWWLGFLVSSV 195 (588)
Q Consensus 119 ~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~---~~i~~~~~w~~~f~i~~~ 195 (588)
+++|+++|+|.|...+...++++|.+|+++ |++++++++...++|..+++.++ +......+||+.|++.++
T Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~ 204 (481)
T TIGR00879 131 IVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLI 204 (481)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH
Confidence 999999999999999999999999999888 99999999999999999999998 777777899999999666
Q ss_pred HHHHHHHHHHhhccceeec-CCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhc
Q 007816 196 ANFIGLIALAAGKCLYRIQ-QPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAA 274 (588)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (588)
..++..+..++ .|+.+.. ..++.. ....+. .++......+.+....+...... ...
T Consensus 205 ~~~~~~~~~~~-l~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 261 (481)
T TIGR00879 205 PAGLLFLGLFF-LPESPRWLVGKGRV-EEARKS----LARLRGTSGEDKELLDELELIDI-----------------KRS 261 (481)
T ss_pred HHHHHHHHHhc-CCCChHHHHHcCCh-HHHHHH----HHHHhCCCCCcHHHHHHHHHHHH-----------------HHH
Confidence 55544443333 2221100 000000 000000 00000000000000000000000 000
Q ss_pred cCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHhhhcCCCCCcccccCCcccchhHHHHH
Q 007816 275 IMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMS 354 (588)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 354 (588)
.+.+..+..|..+.+......++.+....+..+..........++.....+..+.+.. ..+.......+..+
T Consensus 262 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~ 333 (481)
T TIGR00879 262 --IEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTD------HAFLVSIIVGAVNF 333 (481)
T ss_pred --HHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCch------HHHHHHHHHHHHHH
Confidence 0000000112111110000011111111111111111111111112222222222211 11222223333444
Q ss_pred HHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHH
Q 007816 355 ILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADM 434 (588)
Q Consensus 355 ~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (588)
++.++..++.++++||+. +.++.+++++++++.+....... ...+ ......++....++.+....
T Consensus 334 ~~~~~~g~l~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~ 398 (481)
T TIGR00879 334 AFTFVAIFLVDRFGRRPL-----------LLIGAAGMAICLFVLGILGASFV--TGSS--KSSGNVAIVFILLFIAFFAM 398 (481)
T ss_pred HHHHHHHHHHHHhcchHH-----------HHHHHHHHHHHHHHHHHHhhccc--CCcc--cchhHHHHHHHHHHHHHHHc
Confidence 444444555444455542 45666666776666653311100 0000 00122233333333344444
Q ss_pred HHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHH
Q 007816 435 FTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVS 514 (588)
Q Consensus 435 ~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~ 514 (588)
...+..+.+..|.+|++.|++++++.++...+++++++.+.+.+.+.. +| .+.|+++++++
T Consensus 399 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~--------~~-----------~~~f~~~~~~~ 459 (481)
T TIGR00879 399 GWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI--------GV-----------GGVFIFFGGLN 459 (481)
T ss_pred cccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------Cc-----------cceehhHHHHH
Confidence 456777788899999999999999999999999999998888764311 22 23488888898
Q ss_pred HHHHHHHHHhhcccccccCCC
Q 007816 515 VLNLVLYLYAAAWYKYKPENC 535 (588)
Q Consensus 515 ~~~~v~~~~~~~e~~~~~le~ 535 (588)
++++++.+++.||+|+++++|
T Consensus 460 ~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 460 VLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred HHHHHHHheecccCCCCChhh
Confidence 888888888889888776554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=241.96 Aligned_cols=387 Identities=14% Similarity=0.045 Sum_probs=233.4
Q ss_pred HHHchhccCCC---hhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 007816 30 VLYFKNEMHFD---LAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGK 106 (588)
Q Consensus 30 ~~~~~~~l~~~---~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~ 106 (588)
.+.+.++++++ ..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.+++++++
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~------------ 178 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFSP------------ 178 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHcc------------
Confidence 34567889998 8999999999999999999999999999 9999999999999999999998886
Q ss_pred CCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccch
Q 007816 107 SSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSW 186 (588)
Q Consensus 107 ~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w 186 (588)
+++.+++.|++.|++.|...+...++++|.+|+++ |++..++......+|.++++.+++.+.+ |
T Consensus 179 -------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---w 242 (505)
T TIGR00898 179 -------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---W 242 (505)
T ss_pred -------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---H
Confidence 56789999999999999999999999999999887 9999999999999999999988776653 9
Q ss_pred hHHHHHHHHHHHHHHHHHHhh--ccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhcccccccCCC
Q 007816 187 WLGFLVSSVANFIGLIALAAG--KCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTWERIPHA 264 (588)
Q Consensus 187 ~~~f~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 264 (588)
|+.|++..++.++..+..++. +|++...+.+.++. .+.+....+.++.+.+ ....+...
T Consensus 243 r~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a---~~~l~~~~~~~~~~~~---~~~~~~~~------------- 303 (505)
T TIGR00898 243 RWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEA---LKILQRIAKINGKKLP---AEVLSLSL------------- 303 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHH---HHHHHHHHHHcCCCCC---HHHHhhhh-------------
Confidence 999998877765554444322 12221111111111 1111111111111100 00000000
Q ss_pred cchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHhhhcCCCCCcccccCC
Q 007816 265 NQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCL-AQLQTFSITQGAAMDPHLGSIKVPTS 343 (588)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (588)
++ ...+. .++..++...+ + +.+......... .+... ..++..... ..... ....
T Consensus 304 ------~~--~~~~~-~~~~~~~~l~~----~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~-------~~~~ 358 (505)
T TIGR00898 304 ------EK--DLSSS-KKQYSFLDLFR----T-PNLRKTTLCLMM---LWFTTAFSYYGLVLD-LGNLG-------GNIY 358 (505)
T ss_pred ------hh--hhhhc-cCCCcHHHHhC----C-hHHHHHHHHHHH---HHHHHHHHHHHHhcc-ccccC-------CChH
Confidence 00 00000 00011111000 0 111111111111 11111 111110000 00000 0011
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHH
Q 007816 344 SIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLS 423 (588)
Q Consensus 344 ~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (588)
.......+..+++..+..++.++++||+. +.++.+++++++++..... ....++..
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~-----------~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~ 414 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYT-----------MAASLLLAGVALLLLLFVP-------------VDLYFLRT 414 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHH-----------HHHHHHHHHHHHHHHHHcC-------------CCchHHHH
Confidence 11122233333344444445444566653 4556666666665554331 11122333
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcch
Q 007816 424 FQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNV 503 (588)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 503 (588)
...++.+++....++..+.+..|.+|++.|+.++|+.+....+++++++.+.+ +.. .+.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~--------------------~~~ 473 (505)
T TIGR00898 415 ALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE--------------------KWL 473 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH--------------------HHH
Confidence 44455556666677888899999999999999999999999999999988777 321 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCC
Q 007816 504 NLFYWFLAIVSVLNLVLYLYAAAWYKYKPENC 535 (588)
Q Consensus 504 ~~~f~~~a~~~~~~~v~~~~~~~e~~~~~le~ 535 (588)
...+++++++++++.++. ++.|||++++++|
T Consensus 474 ~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 474 FLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred hhHHHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence 234777777777776654 4579999988765
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=235.54 Aligned_cols=399 Identities=11% Similarity=0.028 Sum_probs=244.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHH
Q 007816 7 NFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 86 (588)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig 86 (588)
.+..+++..++..+..- +++...+.+.+++|.+..+.+|+.+.|.++..++.+++|+++|| +|||+++.++..++.++
T Consensus 7 ~~~~~~~~~~~~~ld~t-iv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~~ 84 (495)
T PRK14995 7 TLVIIVLVYIPVAIDAT-VLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 34555556666554444 45556677788999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccC-CCCCchhhhhhhhHHHHHHHH
Q 007816 87 LVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQF-DENDPKGAKALASYFNFYLLA 165 (588)
Q Consensus 87 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~-~~~~~~~~~~Rg~~~~~~~~~ 165 (588)
++++++++ +.+.++++|+++|+|.|+..|.....+.+.+ |+++ |+++++++...
T Consensus 85 ~~~~~~a~-------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~g~~~~~ 139 (495)
T PRK14995 85 SLAAAFSP-------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMALGVWAAV 139 (495)
T ss_pred HHHHHHcC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHH
Confidence 99999987 5678999999999999999998888887776 4444 99999999999
Q ss_pred HHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHH------HHHHHHHhcCCCC
Q 007816 166 TTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQ------VLVVAIKNRKLSL 239 (588)
Q Consensus 166 ~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 239 (588)
.++|..+||.+++++.++.+||+.|++..++.++..++.....|+.+..+.++.+...... .+....++.....
T Consensus 140 ~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~ 219 (495)
T PRK14995 140 GSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGF 219 (495)
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccC
Confidence 9999999999999999999999999998887766666555555542221111111111100 0001111100000
Q ss_pred CCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007816 240 PDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQ 319 (588)
Q Consensus 240 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 319 (588)
..++..+....-..... ..+. ..+.+ .+..-.+++.+++ +.........+...........
T Consensus 220 ~~~~~~~~~~~~~~~~l----------~~f~-~~e~~--~~~p~~~~~lf~~------~~~~~~~~~~~~~~~~~~~~~~ 280 (495)
T PRK14995 220 LSLWVTSLTLLTGALLL----------GLFI-RTQLA--ASRPMIDMRLFTH------RIILSGVVMAMTAMITLVGFEL 280 (495)
T ss_pred CchHHHHHHHHHHHHHH----------HHHH-HHHhc--CCCCCcCHHHhCC------cccHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000000 0000 00000 0000001111111 1111111111111111111111
Q ss_pred chhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 007816 320 LQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAG 399 (588)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~ 399 (588)
+.+.+.....+.+. ...+.......++..+..++..++.++.++|+ .+..|.++++++.+.+.
T Consensus 281 ~~~~~lq~v~g~s~------~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----------~~~~g~~~~~~~~~~l~ 343 (495)
T PRK14995 281 LMAQELQFVHGLSP------LEAGMFMLPVMVASGFSGPIAGILVSRLGLRL-----------VATGGMALSALSFYGLA 343 (495)
T ss_pred HHHHHHHHHcCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-----------HHHHHHHHHHHHHHHHH
Confidence 12222222223221 22333444445566666677666655545443 25567777766665544
Q ss_pred HHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007816 400 LVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIIN 479 (588)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~ 479 (588)
... ...+.+......++.+++.+...+.....+.+.+|++.++.++++.++.+.+|+.++..+.+.+.
T Consensus 344 ~~~------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 344 MTD------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred Hhc------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 01233344556677889988888888999999999999999999999999999999998887764
Q ss_pred h
Q 007816 480 A 480 (588)
Q Consensus 480 ~ 480 (588)
+
T Consensus 412 ~ 412 (495)
T PRK14995 412 S 412 (495)
T ss_pred H
Confidence 3
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-24 Score=230.00 Aligned_cols=402 Identities=10% Similarity=0.039 Sum_probs=245.6
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
+.+|.+.+..++..+..+.+.+.++.+. +++|.+..+.+++.+.+.++..++.+++|+++|| +|||+.+..+..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~ 87 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHH
Confidence 4688899999998888888877666555 5799999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLA 165 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~ 165 (588)
+.+++++++ +.+.++++|+++|+|.|...|...+++.|.+|+++ |++.+++....
T Consensus 88 ~~~~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 142 (471)
T PRK10504 88 GSLFCALSG-------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLP 142 (471)
T ss_pred HHHHHHHhC-------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHH
Confidence 998888765 55678999999999999999999999999998666 89999999999
Q ss_pred HHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHH---HHHH--HHHhcCCCCC
Q 007816 166 TTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQ---VLVV--AIKNRKLSLP 240 (588)
Q Consensus 166 ~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~p 240 (588)
.++|..+||.+++++.++.+||+.|.+..+...+..++.....|+....+++.+....... .... ...+.+.. .
T Consensus 143 ~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 221 (471)
T PRK10504 143 GQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGL-G 221 (471)
T ss_pred HHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcC-C
Confidence 9999999999999999889999999998887666666555555543322221111100000 0000 01111000 0
Q ss_pred CCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007816 241 DNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQL 320 (588)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 320 (588)
..+..........-.. -..+..+ ..... ....+.+.++ .|.....+...+...........+
T Consensus 222 ~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~~-~~~~~~~l~~------~~~~~~~l~~~~~~~~~~~~~~~~ 283 (471)
T PRK10504 222 LSPLAIAGLVAVGVVA---------LLLYLLH--ARNNN-RALFSLKLFR------TRTFSLGLAGSFAGRIGSGMLPFM 283 (471)
T ss_pred cchHHHHHHHHHHHHH---------HHHHHHH--HhcCC-CCccCHHHhc------ccchHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000000 0000000 00000 0000011000 111111111111111111111112
Q ss_pred hhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 007816 321 QTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGL 400 (588)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~ 400 (588)
.+.+.....+.+. ...+.......++.++..++..++.+++++|+ .+.++.++++++..+...
T Consensus 284 ~~~~~~~~~g~~~------~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~-----------~~~~~~~~~~~~~~~~~~ 346 (471)
T PRK10504 284 TPVFLQIGLGFSP------FHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRR-----------VLVATTLGLALVSLLFML 346 (471)
T ss_pred HHHHHHHHcCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-----------HHHHHHHHHHHHHHHHHh
Confidence 2222222222221 11222223334444444455666654445443 244566656655554433
Q ss_pred HHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007816 401 VEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINA 480 (588)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~ 480 (588)
.. .....+++...+++.+++.+...+..+..+.+.+|++.++.++|+.++.+.++..+++.+.+.+.+
T Consensus 347 ~~------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 347 VA------------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred cc------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 011223334455666788888888888999999999999999999999999999999999887655
Q ss_pred hh
Q 007816 481 VT 482 (588)
Q Consensus 481 ~~ 482 (588)
..
T Consensus 415 ~~ 416 (471)
T PRK10504 415 LF 416 (471)
T ss_pred Hh
Confidence 43
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=229.62 Aligned_cols=399 Identities=13% Similarity=0.058 Sum_probs=257.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
.|+|+++.++..+++..++...... ..+.+.++++.+..+.|++.+.+.++..+++++.|+++|| +|||+.+.++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~ 91 (417)
T PRK10489 14 KTHPAFRAVFIARFISIFGLGLLGV-AVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGT 91 (417)
T ss_pred HhCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHH
Confidence 3678888888888888777654444 4455556778899999999999999999999999999999 8999999999888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.++.+...... ..+++.+++.|+++|++.|...+...+++.|..|+++ |++..++.
T Consensus 92 ~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 151 (417)
T PRK10489 92 CGLGFIGLALNAFLP--------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAIT 151 (417)
T ss_pred HHHHHHHHHHHHHcC--------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHH
Confidence 888777665421100 1156788899999999999999999999999999776 89999999
Q ss_pred HHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCC
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDN 242 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 242 (588)
+...++|..+||.+++++.+..+|++.|.+..+..++..+..+. .|+. +++.++ ..+.
T Consensus 152 ~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~---~~~~~~------------------~~~~ 209 (417)
T PRK10489 152 MLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR-LPAL---PPPPQP------------------REHP 209 (417)
T ss_pred HHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-CCCC---CCCCcc------------------cccc
Confidence 99999999999999999888889999998877765555444332 2211 110000 0000
Q ss_pred chhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchh
Q 007816 243 PEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQT 322 (588)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 322 (588)
.+... + .++ .....+.. +...+.............+..
T Consensus 210 ~~~~~-----------------------~-------------~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p 247 (417)
T PRK10489 210 LRSLL-----------------------A-------------GFR-----FLLASPVV-GGIALLGGLLTMASAVRVLYP 247 (417)
T ss_pred hHHHH-----------------------H-------------HHH-----HHHcChHH-HHHHHHHHHHHHHHhHHHhhH
Confidence 00000 0 000 00000111 111111111111111111112
Q ss_pred HHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 007816 323 FSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVE 402 (588)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~ 402 (588)
.+..+..+.+. ...+.......++.+++..+..++ .+|. ++.+.+..+.+++++++++....
T Consensus 248 ~~~~~~~g~~~------~~~g~~~~~~~~g~~ig~~~~~~l----~~~~-------~~~~~l~~~~~~~~~~~~~~~~~- 309 (417)
T PRK10489 248 ALADEVWQMGA------AQIGLLYAAVPLGAALGALTSGWL----AHSA-------RPGLLMLLSTLGSFLAVGLFGLM- 309 (417)
T ss_pred HHHHhccCCCh------hHhHHHHHHHHHHHHHHHHHHHHh----hhcc-------CcchHHHHHHHHHHHHHHHHHcc-
Confidence 22222122221 112233334455555555555554 2221 11223445666666665544322
Q ss_pred HHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007816 403 VIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVT 482 (588)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 482 (588)
.+.+.+....++.+++.....+..+.++.+.+|++.||+++|+.+..+.++..+++.+.+.+.+..
T Consensus 310 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~ 375 (417)
T PRK10489 310 --------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM 375 (417)
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh
Confidence 123334445566677777777777889999999999999999999999999999999998876522
Q ss_pred cccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCC
Q 007816 483 KRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENCSDI 538 (588)
Q Consensus 483 ~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~le~~~~ 538 (588)
+....++.++++.++..++.+...+++|++++||+|.
T Consensus 376 -------------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 376 -------------------TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred -------------------chhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 1233577777777777777777889999999988775
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-24 Score=223.79 Aligned_cols=375 Identities=13% Similarity=0.042 Sum_probs=248.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHH
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 84 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ 84 (588)
.+++..++...+...++.....+.++.++++++|.|..+.|++.+++.++..+++++.|+++|| +||||++.++.++..
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHH
Confidence 4678889999999999988888888899999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 85 LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 85 ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
+++++++++....+.. ..+..++++.|+++|+|.+...+....++.|..|+++ |+++++++..
T Consensus 93 ~~~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~ 155 (399)
T PRK05122 93 LSGLLYLLAGLLAAWP-----------VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGI 155 (399)
T ss_pred HHHHHHHHhhhhhccc-----------hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhh
Confidence 9887776653211000 1246689999999999999999999999999999877 9999999999
Q ss_pred HHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCch
Q 007816 165 ATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPE 244 (588)
Q Consensus 165 ~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 244 (588)
..++|..+|+.+++.+.+..+|+..+++..+..++..++.. ..|+ .+++++ +
T Consensus 156 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~---------------------~--- 207 (399)
T PRK05122 156 ATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLAR-PRPA---VPPVKG---------------------E--- 207 (399)
T ss_pred hhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh-cCCC---CCCCCc---------------------c---
Confidence 99999999999999998889999988876655433222111 0110 000000 0
Q ss_pred hhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHH
Q 007816 245 ELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFS 324 (588)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 324 (588)
. .+++ +..++....................+...+
T Consensus 208 ---------------------~-----------------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (399)
T PRK05122 208 ---------------------R-----------------LPFR-------RVLGRVWPYGMGLALASIGFGTIATFITLY 242 (399)
T ss_pred ---------------------c-----------------hhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 000111110000111111111111111111
Q ss_pred HHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 007816 325 ITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVI 404 (588)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 404 (588)
.. ..+.+ ..+.......++.++..++..++.++.++|+ .+..+.++++++.++....
T Consensus 243 ~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-----------~~~~~~~~~~~~~~~~~~~--- 299 (399)
T PRK05122 243 YA-ARGWD--------GAALALTLFGVAFVGARLLFGNLINRLGGLR-----------VAIVSLLVEILGLLLLWLA--- 299 (399)
T ss_pred HH-Hcccc--------cchHHHHHHHHHHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHHHHHHHHHh---
Confidence 11 11111 1111122334444455555555544444332 2445666666665544432
Q ss_pred HhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 007816 405 RRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKR 484 (588)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~ 484 (588)
.+.+.+.+..++.+++.....+.......+.+|++.||+++++.+....++..+++.+.+.+.+.
T Consensus 300 ------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--- 364 (399)
T PRK05122 300 ------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW--- 364 (399)
T ss_pred ------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 12334455567778888888888778888999999999999999999999998888877766431
Q ss_pred cCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 007816 485 ITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYA 524 (588)
Q Consensus 485 ~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~ 524 (588)
.+++..|++.+++++++.+..+++
T Consensus 365 ----------------~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 365 ----------------FGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred ----------------cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 134567888888878777665554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-24 Score=224.13 Aligned_cols=352 Identities=11% Similarity=-0.013 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHH
Q 007816 9 FVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 88 (588)
Q Consensus 9 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~ 88 (588)
+..++..+++.+..+. .+...+.+.+++|.++.+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+
T Consensus 18 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~ 95 (406)
T PRK11551 18 GLCFLVALLEGLDLQS-AGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVALFGLFSL 95 (406)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHH
Confidence 3344455555555544 3445567788999999999999999999999999999999999 9999999999999999988
Q ss_pred HHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 007816 89 MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTV 168 (588)
Q Consensus 89 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~i 168 (588)
++++++ +.+.+++.|+++|++.|...+...++++|.+|+++ |++.+++.+...++
T Consensus 96 ~~~~~~-------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~ 150 (406)
T PRK11551 96 ATAQAW-------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPF 150 (406)
T ss_pred HHHHhc-------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHH
Confidence 888876 56679999999999999999999999999999877 99999999999999
Q ss_pred HHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 007816 169 AAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYE 248 (588)
Q Consensus 169 G~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 248 (588)
|..+++.+++.+.+..+||+.|++..+..++..++.....|+.+...+ ++ +..+.++.
T Consensus 151 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------~~--~~~~~~~~--- 208 (406)
T PRK11551 151 GGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQ-----------------AA--GAGKQRAP--- 208 (406)
T ss_pred HHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHh-----------------cc--Ccchhhhh---
Confidence 999999998888888899999998776544444433332232110000 00 00000000
Q ss_pred hhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHh
Q 007816 249 INEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQG 328 (588)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 328 (588)
.++...++ .+ .++....................+.+.+. +.
T Consensus 209 ------------------------------------~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~ 249 (406)
T PRK11551 209 ------------------------------------VLRALFGE-GR-ATATLLLWISYFFTLIVLYFLLNWLPSLL-VG 249 (406)
T ss_pred ------------------------------------hHHHHhhh-hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 00000000 00 01111111111111111111111111111 11
Q ss_pred hhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007816 329 AAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNA 408 (588)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~ 408 (588)
.+.+. ...+.......++.+++..+..++.++++||+. +..+.+.+.++++.....
T Consensus 250 ~g~s~------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-----------~~~~~~~~~~~~~~~~~~------- 305 (406)
T PRK11551 250 QGLSR------SQAGLVQIAFNIGGALGSLLIGALMDRLRPRRV-----------VLLIYAGILASLAALAAA------- 305 (406)
T ss_pred CCCCh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHHHhc-------
Confidence 22221 112233333444555555666666555565542 223333344443333221
Q ss_pred ccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007816 409 FNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINA 480 (588)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~ 480 (588)
.+.+.+.+..++.+++.....+..+++..|.+|++.|+++.|+.+....+++.+++.+.+.+.+
T Consensus 306 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 306 --------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred --------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 1233344455566666667778888999999999999999999999999999999998887643
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-23 Score=220.34 Aligned_cols=375 Identities=12% Similarity=0.027 Sum_probs=245.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 83 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~ 83 (588)
+++.++.+.+..++..++.....+.++.|+++++|.|..+.|++.+++.++..+++++.|+++|| +||||.+.++.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~ 91 (392)
T PRK12382 13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLAC 91 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHH
Confidence 45678888888888888888788888889999999999999999999999999999999999999 99999999998888
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007816 84 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 163 (588)
Q Consensus 84 ~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~ 163 (588)
.++.+........+.. ...+++.++++|+++|+|.+...+...+++.|..|+++ |++++++++
T Consensus 92 ~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~ 154 (392)
T PRK12382 92 GLAGLAYLLAAILPVS-----------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNG 154 (392)
T ss_pred HHHHHHHHhhhccccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHH
Confidence 7766543322110000 01267789999999999999999999999999999887 999999999
Q ss_pred HHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCc
Q 007816 164 LATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNP 243 (588)
Q Consensus 164 ~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 243 (588)
...++|..+||.+++++.+..+|++.+.+..+..++.. ... ++.++.+++++ .+
T Consensus 155 ~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~-------------------~~--- 208 (392)
T PRK12382 155 MAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFN-GTVRKVPAHAG-------------------ER--- 208 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHH-HhccCCCCCcc-------------------cC---
Confidence 99999999999999999888899987766544322221 111 11000000000 00
Q ss_pred hhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHH-HHHHHHHHHHHHhhhhchh
Q 007816 244 EELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRM-MPILASTILMNTCLAQLQT 322 (588)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~ 322 (588)
.+++ +..|...+. +........ ......+..
T Consensus 209 ----------------------------------------~~~~-------~~~~~~~~~~~~~~l~~~~-~~~~~~~~~ 240 (392)
T PRK12382 209 ----------------------------------------PSLW-------SVVGLIWKPGLGLALQGVG-FAVIGTFVS 240 (392)
T ss_pred ----------------------------------------chHH-------HHHHHHHHhHHHHHHHHHH-HhHHHHHHH
Confidence 0000 000101000 000011111 111111111
Q ss_pred HHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 007816 323 FSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVE 402 (588)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~ 402 (588)
.+..+ .+.. ..+.......++.++..++..++.+++++|+. +..+..+++++.++....
T Consensus 241 ~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-----------~~~~~~~~~~~~~~~~~~- 299 (392)
T PRK12382 241 LYFAS-KGWA--------MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV-----------AIVSLLVETVGLLLLWLA- 299 (392)
T ss_pred HHHHh-cCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-----------hHHHHHHHHHHHHHHHHc-
Confidence 11111 1111 01112223344445555666666555555432 445666666665544322
Q ss_pred HHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007816 403 VIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVT 482 (588)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 482 (588)
.+.+.+.+..++.+++.....+.......+.+|++.||++.|+.+....+++.+++.+.+.+.+..
T Consensus 300 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~ 365 (392)
T PRK12382 300 --------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF 365 (392)
T ss_pred --------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123344455667778877778888888889999999999999999999999999999888775411
Q ss_pred cccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 007816 483 KRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYA 524 (588)
Q Consensus 483 ~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~ 524 (588)
+++..|.+.+++.+++.++.+++
T Consensus 366 -------------------g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 366 -------------------GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred -------------------CchHHHHHHHHHHHHHHHHHHhh
Confidence 23456888888888777766544
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-24 Score=225.38 Aligned_cols=166 Identities=10% Similarity=0.097 Sum_probs=147.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 83 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~ 83 (588)
|.+.++...+..+.+.+..+. ...+.+++++++|.|+.+.+++.+++.++..++.++.|+++|| +|||+++.++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~ 93 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFML-IFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHH
Confidence 345566777777777776664 4566678889999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007816 84 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 163 (588)
Q Consensus 84 ~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~ 163 (588)
.++.+++++++ +.+.++++|+++|+|.|...+....+++|.+|+++ |+++.++++
T Consensus 94 ~~~~~~~~~~~-------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~ 148 (426)
T PRK12307 94 SVGTGLSGLAS-------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLV 148 (426)
T ss_pred HHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHH
Confidence 99999999886 56789999999999999999999999999999877 999999999
Q ss_pred HHHHHHHHHHhhhhheeccccchhHHHHHHHHH
Q 007816 164 LATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVA 196 (588)
Q Consensus 164 ~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~ 196 (588)
...++|.++++.+.+.+.+..+||+.|++....
T Consensus 149 ~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 149 SGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 999999999999888888888999999886543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=225.61 Aligned_cols=175 Identities=13% Similarity=0.084 Sum_probs=157.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 83 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~ 83 (588)
.+|+++.++...++..++.+.+.+.+++|+++++|+|..++|++.+.+.++..+++++.|+++|| +|||+++.++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007816 84 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 163 (588)
Q Consensus 84 ~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~ 163 (588)
.++.++.++++ +.+.+++.|.+.|.+.+...++.+++.+|..|+++ |++.+++.+
T Consensus 84 ~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~ 138 (395)
T PRK10054 84 ASGFIAIPLVN-------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNY 138 (395)
T ss_pred HHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHH
Confidence 99998888876 55678888999999888889999999999999777 999999999
Q ss_pred HHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHH
Q 007816 164 LATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 164 ~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
...++|.++||.+++++.. .+|+.+|.+.++..++..++..
T Consensus 139 ~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 139 TMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874 6999999988777666544433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-23 Score=221.82 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHhHHHHHHHchhccC---CChhhHHHHHHHHH---HHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHH
Q 007816 14 FSALENMGFIANGISMVLYFKNEMH---FDLAGASNTLTNFF---GSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 87 (588)
Q Consensus 14 ~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~~~~~i~~~~~---~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~ 87 (588)
..+++.+..+. .+.+.+++.++++ .+..+.+.+.+.+. ++..++++++|+++|| +|||+++.++.+++.+++
T Consensus 30 ~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~ 107 (432)
T PRK10406 30 GNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMMCFGS 107 (432)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHH
Confidence 35666666554 6777788888874 55565555555444 4445999999999999 899999999999999999
Q ss_pred HHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHH
Q 007816 88 VMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATT 167 (588)
Q Consensus 88 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~ 167 (588)
++++++++..+.. ......+++.|+++|+|.|+..|...++++|.+|+++ |+++.++.+...+
T Consensus 108 ~~~~~~~~~~~~~-----------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~ 170 (432)
T PRK10406 108 LVIACLPGYETIG-----------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLI 170 (432)
T ss_pred HHHhhcCCchhHH-----------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHH
Confidence 9999987532100 0124569999999999999999999999999999887 9999999988889
Q ss_pred HHHHHHhhhhheec--------cccchhHHHHHHHHHHHHH
Q 007816 168 VAAVIGVTGIVYVF--------TEKSWWLGFLVSSVANFIG 200 (588)
Q Consensus 168 iG~~ig~~~~~~i~--------~~~~w~~~f~i~~~~~~~~ 200 (588)
.|..+++.++..+. ..+|||++|++.+++.++.
T Consensus 171 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 171 GGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 99888877654433 2579999999877765443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-24 Score=221.05 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=141.6
Q ss_pred hHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007816 25 NGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDC 104 (588)
Q Consensus 25 v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~ 104 (588)
..+...+++.+++|.++.+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.+++++++
T Consensus 12 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~---------- 80 (399)
T TIGR00893 12 NLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAG---------- 80 (399)
T ss_pred hhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHc----------
Confidence 45556677899999999999999999999999999999999999 8999999999999999999998886
Q ss_pred CCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheecccc
Q 007816 105 GKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEK 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~ 184 (588)
+.+.++++|+++|+|.|...+..+.+++|.+|+++ |++.+++.+...++|..+++.+++++.+..
T Consensus 81 ---------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 145 (399)
T TIGR00893 81 ---------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHF 145 (399)
T ss_pred ---------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999999777 999999999999999999999999888888
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhc
Q 007816 185 SWWLGFLVSSVANFIGLIALAAGK 208 (588)
Q Consensus 185 ~w~~~f~i~~~~~~~~~~~~~~~~ 208 (588)
+||+.|.+.++..++..++.+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~ 169 (399)
T TIGR00893 146 SWQWAFIIEGVLGIIWGVLWLKFI 169 (399)
T ss_pred CchHHHHHHHHHHHHHHHHhhhee
Confidence 999999988877655555444433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=223.16 Aligned_cols=165 Identities=10% Similarity=0.019 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 007816 12 VVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLT 91 (588)
Q Consensus 12 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~ 91 (588)
++..++..+..+.. +...+.+.+++|+|..+.+++.+.+.++..++.+++|+++|| +|||+.+.++.++..++.++++
T Consensus 29 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~ 106 (434)
T PRK11663 29 YLGYALFYFTRKSF-NAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFG 106 (434)
T ss_pred HHHHHHHHHhhhhH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHH
Confidence 34444433333333 344556667899999999999999999999999999999999 8999999999999999999998
Q ss_pred HhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH
Q 007816 92 IQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAV 171 (588)
Q Consensus 92 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ 171 (588)
+++ +++.+++.|++.|++.|...+...++++|.+|+++ |++.+++++...++|..
T Consensus 107 ~~~-------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~ 161 (434)
T PRK11663 107 FSS-------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGA 161 (434)
T ss_pred HHh-------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHH
Confidence 886 56678999999999999999999999999999777 99999999999999999
Q ss_pred HHhhhhheeccccchhHHHHHHHHHHHHHHHH
Q 007816 172 IGVTGIVYVFTEKSWWLGFLVSSVANFIGLIA 203 (588)
Q Consensus 172 ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 203 (588)
+++.+++++.+.++||+.|++.++..++..++
T Consensus 162 ~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~ 193 (434)
T PRK11663 162 LIPLVVGAIALHYGWRYGMMIAGIIAIVVGLF 193 (434)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 99999999988899999999887765444333
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=209.55 Aligned_cols=373 Identities=15% Similarity=0.059 Sum_probs=254.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHH
Q 007816 7 NFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 86 (588)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig 86 (588)
.++.+.+..|+-...=|.+++ +.+-+.+++|.|..++|+.++.|..+..++.|+-..++|| +.||++++....++++|
T Consensus 14 ~l~aLa~~~F~igttEfv~~g-LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~lFi~~ 91 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVG-LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFIVS 91 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHh-chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHH
Confidence 345555555655555554444 5567889999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHH
Q 007816 87 LVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLAT 166 (588)
Q Consensus 87 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~ 166 (588)
.+++++++ |+++++++|++.|+..|.+.+...++.+++.||++ |++++++.....
T Consensus 92 n~l~alAp-------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~ 146 (394)
T COG2814 92 NLLSALAP-------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGL 146 (394)
T ss_pred HHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHH
Confidence 99999998 77899999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhh
Q 007816 167 TVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEEL 246 (588)
Q Consensus 167 ~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 246 (588)
.++.++|.-+|.++.+.+|||..|++-.+..++..+..+...| +.+.++. .+.+.+..
T Consensus 147 tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~--------------------~~~~~~~~ 204 (394)
T COG2814 147 TLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGS--------------------LPGPLRTL 204 (394)
T ss_pred HHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC--------------------CCcchhHH
Confidence 9999999999999999999999999999988888777777666 1110000 00000000
Q ss_pred hhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHH
Q 007816 247 YEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSIT 326 (588)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 326 (588)
.. .++ ++++...+...............|..++..
T Consensus 205 ~~---------------------------------------~l~------~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~ 239 (394)
T COG2814 205 LR---------------------------------------LLR------RPGVLLGLLATFLFMTGHFALYTYIRPFLE 239 (394)
T ss_pred HH---------------------------------------Hhc------CchHHHHHHHHHHHHcchhhhHHhHHHHHH
Confidence 00 000 011112222222222222233344455555
Q ss_pred HhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007816 327 QGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRR 406 (588)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 406 (588)
+..+++.. ..+.....++++.+++..+..|+.|+ +. .+.+.....++++.++.+.+.
T Consensus 240 ~v~g~s~~------~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~-----------~~~l~~~~~l~a~~~l~l~~~----- 296 (394)
T COG2814 240 SVAGFSVS------AVSLVLLAFGIAGFIGNLLGGRLADR-GP-----------RRALIAALLLLALALLALTFT----- 296 (394)
T ss_pred HccCCCHh------HHHHHHHHHHHHHHHHHHHHhhhccc-cc-----------hhHHHHHHHHHHHHHHHHHHh-----
Confidence 54444322 22334455566666666666666333 11 122444556666666655443
Q ss_pred hhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q 007816 407 NAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRIT 486 (588)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 486 (588)
..+.+......++.++.........+....+..| +.+..+++++....++|+.+|..+.+.+.+.
T Consensus 297 ---------~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~----- 361 (394)
T COG2814 297 ---------GASPALALALLFLWGFAFSPALQGLQTRLARLAP-DAADLAGSLNVAAFNLGIALGAALGGLVLDA----- 361 (394)
T ss_pred ---------cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 1233333333333444444444444444445334 5589999999999999999999999987552
Q ss_pred CCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhh
Q 007816 487 PSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAA 525 (588)
Q Consensus 487 ~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~ 525 (588)
.++....++.+.+.+++.++.+...
T Consensus 362 --------------~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 362 --------------LGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred --------------hchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345567787888777777665543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-23 Score=218.87 Aligned_cols=174 Identities=16% Similarity=0.125 Sum_probs=129.6
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhcc--CCChhhHHHHHH-----HHHHHHHHHhhhhHHhhhcccchhHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEM--HFDLAGASNTLT-----NFFGSTFLLCLVGGFISDTFLSRFATCLI 78 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~~~~~~i~~-----~~~~~~~~~~l~~G~l~D~~~GRr~~i~i 78 (588)
|.++...+..+++.+.........+.++.+++ +.++. .+++.+ +..++..+++++.|+++|| +|||+++.+
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l~~ 99 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRMLML 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHHHH
Confidence 44555566667766666543334444566554 56665 455532 3345567888889999999 899999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhH
Q 007816 79 FGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASY 158 (588)
Q Consensus 79 ~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~ 158 (588)
+.+++.+++++++++++..+.. ......+++.|+++|+|.|...+....+++|.+|+++ |++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~ 162 (438)
T PRK09952 100 TVWMMGIATALIGLLPSFSTIG-----------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFY 162 (438)
T ss_pred HHHHHHHHHHHHhcCCcHHHHH-----------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHH
Confidence 9999999999999987533100 0012358899999999999999999999999999877 8999
Q ss_pred HHHHHHHHHHHHHHHhhhhheec--------cccchhHHHHHHHHHHH
Q 007816 159 FNFYLLATTVAAVIGVTGIVYVF--------TEKSWWLGFLVSSVANF 198 (588)
Q Consensus 159 ~~~~~~~~~iG~~ig~~~~~~i~--------~~~~w~~~f~i~~~~~~ 198 (588)
.+..+....+|..++..+...+. .+++||++|++..++.+
T Consensus 163 ~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 163 SSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 99998889999988876655443 35799999998876543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=218.18 Aligned_cols=361 Identities=13% Similarity=0.031 Sum_probs=231.9
Q ss_pred HhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007816 24 ANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPD 103 (588)
Q Consensus 24 ~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~ 103 (588)
...+.+.+.+++++|.|..+.+++.+.+.++..+++++.|+++|| +|||+++..+..++.+|.+++++++
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a~--------- 95 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELYP--------- 95 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHCc---------
Confidence 344566678889999999999999999999999999999999999 9999999999999999999999987
Q ss_pred CCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccc
Q 007816 104 CGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTE 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~ 183 (588)
+++.++++|+++|+|.|...+..+.++.|.+| ++ |+++++.+....++|..+|+.+++++.++
T Consensus 96 ----------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~ 158 (393)
T PRK09705 96 ----------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWLVQH 158 (393)
T ss_pred ----------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999999999986 66 89999999999999999999999888776
Q ss_pred c-chhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhcccccccC
Q 007816 184 K-SWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTWERIP 262 (588)
Q Consensus 184 ~-~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~ 262 (588)
. +||..+.+..+..++....++...++ +|+++ .++ +
T Consensus 159 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------------------~~~--~------------------ 195 (393)
T PRK09705 159 SETWYQTLAWWALPAVVALFAWWWQSAR----EVASS-------------------HKT--T------------------ 195 (393)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCccc-------------------cCC--C------------------
Confidence 4 89988766554433333322221111 00000 000 0
Q ss_pred CCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHhhhcCCCCCcccccC
Q 007816 263 HANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPT 342 (588)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (588)
. ...+.++ .++.+............+.....+...+..+ .+.+. ...
T Consensus 196 --~------------------~~~~~l~------~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~------~~a 242 (393)
T PRK09705 196 --T------------------TPVRVVF------TPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASA------QYS 242 (393)
T ss_pred --c------------------CCccccc------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCh------hhh
Confidence 0 0000000 0111111111111111111111112222222 22221 122
Q ss_pred CcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHH
Q 007816 343 SSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWL 422 (588)
Q Consensus 343 ~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (588)
+.......++.+++.++.+++.++.+||+ .+.++..++.++.+.+.... .+...+
T Consensus 243 g~~~~~~~i~~i~g~~~~g~l~~r~~~~~-----------~~~~~~~l~~~~~~~~~~~~--------------~~~~~~ 297 (393)
T PRK09705 243 GSLLALMTLGQAAGALLMPAMARHQDRRK-----------LLMLALVLQLVGFCGFIWLP--------------LQLPVL 297 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccchH-----------HHHHHHHHHHHHHHHHHHcc--------------chHHHH
Confidence 33344455666666666666644333332 24456555555554433220 111111
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCc
Q 007816 423 SFQYCIFGIADMFTFIGLLEFFYKEAP-AGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKN 501 (588)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~e~~P-~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 501 (588)
..++.+++.+...|.......+..| ++.|++..++.+....++..+++.+.+.+.+.++
T Consensus 298 --~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g------------------ 357 (393)
T PRK09705 298 --WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG------------------ 357 (393)
T ss_pred --HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------
Confidence 1233455666666766666667664 6789999999999899999999988888765321
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 007816 502 NVNLFYWFLAIVSVLNLVLYLYAAAWYKYKP 532 (588)
Q Consensus 502 ~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~ 532 (588)
++...|.+.++++++..+..+.+.|||+.+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 358 NYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 2344577777888888888788888876653
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-23 Score=218.25 Aligned_cols=170 Identities=14% Similarity=0.103 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHH
Q 007816 9 FVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 88 (588)
Q Consensus 9 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~ 88 (588)
+.++...++.+++.+.+.+.++.|+++++|.|..+.|.+.+.+.+...+..+++|+++|| +|||+++.++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHH
Confidence 667889999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 007816 89 MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTV 168 (588)
Q Consensus 89 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~i 168 (588)
++.+++ +.+.+++.|+++|++.|...|...+++.|.+|+++ |++.+++.+...++
T Consensus 92 ~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~ 146 (400)
T PRK11646 92 TMAIAH-------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSA 146 (400)
T ss_pred HHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence 988775 56679999999999999999999999999999877 99999999999999
Q ss_pred HHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHH
Q 007816 169 AAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 169 G~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
|..+||.+++++. +++||+.|++.+...++..++..
T Consensus 147 g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~ 182 (400)
T PRK11646 147 GAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNA 182 (400)
T ss_pred HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 78999999998776555544433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=227.56 Aligned_cols=399 Identities=11% Similarity=0.026 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 87 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~ 87 (588)
+..+++..++..+.. .+.+...+.+.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+.+.++.+++.+++
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 4 TIVLMLGTFMAVLDS-TIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHH
Confidence 344555555555544 455566778888999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHH
Q 007816 88 VMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATT 167 (588)
Q Consensus 88 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~ 167 (588)
++++.++ +.+.++++|+++|+|.|...+...+++.|.+|+++ |++++++++....
T Consensus 82 ~~~~~~~-------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ 136 (485)
T TIGR00711 82 LLCGVAP-------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVL 136 (485)
T ss_pred HHHhCcC-------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHH
Confidence 9998876 56689999999999999999999999999999776 9999999999999
Q ss_pred HHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHH------HHHHHHHHhcCCCCCC
Q 007816 168 VAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVA------QVLVVAIKNRKLSLPD 241 (588)
Q Consensus 168 iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~p~ 241 (588)
+|..+||.+++++.++.+||+.|++..++.++..++.++..|+.+..+.++.+..... ........+...+...
T Consensus 137 ~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~ 216 (485)
T TIGR00711 137 VAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWF 216 (485)
T ss_pred HHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 9999999999999999999999999887766555554444443211111111111000 0000011111000000
Q ss_pred CchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 007816 242 NPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQ 321 (588)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 321 (588)
++.......... .. ........+...+. ...+++.+++ +.....................+.
T Consensus 217 ~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 278 (485)
T TIGR00711 217 DSNEILILSITG-LV---------AIIAFVVWELTDDN--PLVDLRLFKY------RNFTIGCVYMSLLGLGLYGSFYLL 278 (485)
T ss_pred CchHHHHHHHHH-HH---------HHHHHHHHHHcCCC--CccCHHHHcC------CChHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 00 00000000000000 0001111111 111111111111111111111122
Q ss_pred hHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 007816 322 TFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLV 401 (588)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~ 401 (588)
+.+..+..+.+. ...+.......++.+++.++..++.++.+||+ .+.+|.++++++..++...
T Consensus 279 p~~~~~~~g~s~------~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~-----------~~~~g~~~~~~~~~~~~~~ 341 (485)
T TIGR00711 279 PLYLQQVLGYTA------LQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK-----------LVTIGLILYAVGFYWRAFT 341 (485)
T ss_pred HHHHHHhcCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH-----------HHHHHHHHHHHHHHHHhcc
Confidence 222222222221 11233334445566666666666655445443 2556776666666655421
Q ss_pred HHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007816 402 EVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIIN 479 (588)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~ 479 (588)
. . ...+.+.+....++.+++.+...+.......+..|++.|+.++++.++.+.+++.+++.+.+.+.
T Consensus 342 ~------~-----~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~ 408 (485)
T TIGR00711 342 F------T-----PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL 408 (485)
T ss_pred C------C-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 12344455556677888888888787888889999999999999999999999999998887654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=218.87 Aligned_cols=170 Identities=14% Similarity=0.117 Sum_probs=146.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHH
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 84 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ 84 (588)
++.+....+.+++..+..+.+ +...+.+++++|.+..+.+++.+++.++..++.++.|+++|| +|||+.+.++.++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~ 88 (405)
T TIGR00891 11 WNAFSAAWLGWLLDAFDFFLV-ALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSIVLFS 88 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 345566667777777666644 455567789999999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 85 LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 85 ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
++.+++++++ +++.++++|+++|+|.|...+...+++.|.+|+++ |++++++.+.
T Consensus 89 ~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~ 143 (405)
T TIGR00891 89 AGTLACGFAP-------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLIS 143 (405)
T ss_pred HHHHHHHHhc-------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHH
Confidence 9999998876 56679999999999999999999999999999877 9999999999
Q ss_pred HHHHHHHHHhhhhheeccccc--hhHHHHHHHHHHHHHH
Q 007816 165 ATTVAAVIGVTGIVYVFTEKS--WWLGFLVSSVANFIGL 201 (588)
Q Consensus 165 ~~~iG~~ig~~~~~~i~~~~~--w~~~f~i~~~~~~~~~ 201 (588)
..++|..+++.+++.+.+..+ ||+.|.+.++..++..
T Consensus 144 ~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 144 GYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 999999999999888776555 9999988766544443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=221.91 Aligned_cols=178 Identities=12% Similarity=0.012 Sum_probs=148.8
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHH
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 84 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ 84 (588)
++.++.+.+..+++.+... ..+.+.+.+++++|++..+.|++.+++.++..+++++.|+++|| +|||+++..+.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~d~~-~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~ 84 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRI-NIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLWG 84 (412)
T ss_pred hHHHHHHHHHHHHHHhhhh-hHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHHH
Confidence 4445555555555444444 44556678999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 85 LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 85 ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
++++++++++ +.+.++++|+++|++.|...|+...+++|.+|+++ |++.+++++.
T Consensus 85 ~~~~~~~~~~-------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~ 139 (412)
T TIGR02332 85 IASTATMFAT-------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMI 139 (412)
T ss_pred HHHHHHHHhc-------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHH
Confidence 9999999987 56689999999999999999999999999999776 9999999999
Q ss_pred HHHHHHHHHhhhhheecc------ccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 165 ATTVAAVIGVTGIVYVFT------EKSWWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 165 ~~~iG~~ig~~~~~~i~~------~~~w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
..++|..+++.+++++.. ..+||+.|.+.++..++..++..+..|
T Consensus 140 ~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~ 190 (412)
T TIGR02332 140 AMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD 190 (412)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999887753 369999999987775554444444333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=215.63 Aligned_cols=360 Identities=10% Similarity=0.005 Sum_probs=235.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHH
Q 007816 9 FVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 88 (588)
Q Consensus 9 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~ 88 (588)
|.++...++..++.......++.|.. +++.+..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.+
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~ 79 (365)
T TIGR00900 2 RLLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVA 79 (365)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHH
Confidence 44667777777776666666666554 589999999999999999999999999999999 8999999999999999888
Q ss_pred HHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 007816 89 MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTV 168 (588)
Q Consensus 89 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~i 168 (588)
+.+++.... ..+.+.++++|+++|++.+...+...++++|++|+++ |++.+++.+...++
T Consensus 80 ~~~~~~~~~--------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 139 (365)
T TIGR00900 80 VLPFVALLG--------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSL 139 (365)
T ss_pred HHHHHHHcC--------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHH
Confidence 888775221 1267789999999999999999999999999999776 99999999999999
Q ss_pred HHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 007816 169 AAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYE 248 (588)
Q Consensus 169 G~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 248 (588)
|..+||.+++++.+..+||+.|++..+..++..++.+...++....++ +++ .+ ++...+
T Consensus 140 g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------------~~--~~~~~~ 198 (365)
T TIGR00900 140 FYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASE-IQA------------------LS--NAVLRD 198 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCcc-ccc------------------cc--hhHHHH
Confidence 999999999999888999999998877655554443332211000000 000 00 000000
Q ss_pred hhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhh-hchhHHHHH
Q 007816 249 INEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLA-QLQTFSITQ 327 (588)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ 327 (588)
..+ .++... + .+.................... ...+.+..+
T Consensus 199 --------------------~~~-------------~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (365)
T TIGR00900 199 --------------------TRE-------------GIKFVL----K-NPLLRTLLLLALLFNLVFAPAIVALFPYVQSK 240 (365)
T ss_pred --------------------HHh-------------HHHHHH----c-CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 000 000000 0 0111111111111111111111 122222222
Q ss_pred hhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007816 328 GAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRN 407 (588)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 407 (588)
..+.+. ...+.......++.++..++..++.++.+||+ .+..+.+++++++.......
T Consensus 241 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~----- 298 (365)
T TIGR00900 241 YLGRGS------THYGWVLAAFGLGALLGALLLGLLGRYFKRMA-----------LMTGAIFVIGLAILVVGLTP----- 298 (365)
T ss_pred HhCCch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH-----------HHHHHHHHHHHHHHHHHhhc-----
Confidence 122221 11223333445555555666665543333332 24445555555555444321
Q ss_pred hccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007816 408 AFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINA 480 (588)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~ 480 (588)
. +.+.+.+..++.+++.....+....+..|.+|++.|+++.|+.+....++..+++.+.+.+.+
T Consensus 299 --------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 299 --------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred --------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 244555667788888888899999999999999999999999999999999999998887644
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-23 Score=214.70 Aligned_cols=160 Identities=10% Similarity=-0.000 Sum_probs=129.7
Q ss_pred HHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHh-hccccCC
Q 007816 22 FIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQ-AYSKNLH 100 (588)
Q Consensus 22 ~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a-~~~~~~~ 100 (588)
.....+...+.+++++|.|+.+.|++.+++.++..+++++.|+++|| +|||+++..+......+.+ +... +
T Consensus 6 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~-~~~~~~------ 77 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAG-RLLDPF------ 77 (368)
T ss_pred HHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH-HHHHhc------
Confidence 34466667788899999999999999999999999999999999999 8999987655555544433 3332 3
Q ss_pred CCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhhee
Q 007816 101 PPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYV 180 (588)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i 180 (588)
++..++++|+++|+|.|. .+.....++|.+|+++ |++++++.+...++|..+++.+++++
T Consensus 78 -------------~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l 137 (368)
T TIGR00903 78 -------------NYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKI 137 (368)
T ss_pred -------------cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999996 4556666799999777 99999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 181 FTEKSWWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 181 ~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
.++++||+.|.+.+++.++..++++...|
T Consensus 138 ~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 138 YTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88999999999977765555554444333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-22 Score=212.41 Aligned_cols=359 Identities=12% Similarity=0.064 Sum_probs=225.7
Q ss_pred CcchHHHHHHHHHHHHHHHHH--hHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIA--NGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
|++..|..+...+++...+++ +.....+.+.+++|.|..+.++..+.+.++..++.++.|+++|| +|||+.++++..
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~ 86 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVA 86 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHH
Confidence 555555555555555544443 22233345678999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
+..++.+++..++ +.+.+++.|+++|++.+...+...+++.|.+|+++ |.+.+++
T Consensus 87 ~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~ 141 (406)
T PRK15402 87 FFILTCLAILLAQ-------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITAL 141 (406)
T ss_pred HHHHHHHHHHHHc-------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHH
Confidence 9999999888876 55679999999999999999999999999999776 8888888
Q ss_pred HHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCC
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPD 241 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 241 (588)
.+....+|..++|.+++++.++.+||+.|++.++..++..+......|+....++++ .+
T Consensus 142 ~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~- 200 (406)
T PRK15402 142 MANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK--------------------LS- 200 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc--------------------cc-
Confidence 888888899999999998888889999999887776655554433333211000000 00
Q ss_pred CchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 007816 242 NPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQ 321 (588)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 321 (588)
.+...+ .++. ..++ ++......................
T Consensus 201 -~~~~~~------------------------------------~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 238 (406)
T PRK15402 201 -LKELGR------------------------------------DYKL----VLKN-RRFVAGALALGLVSLPLLAWIALS 238 (406)
T ss_pred -HHHHHH------------------------------------HHHH----HHcC-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000000 0000 0000 111111111111111011111111
Q ss_pred hHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 007816 322 TFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLV 401 (588)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~ 401 (588)
..+..+..+.+.. ..+.......++.+++.++..++.++.++|+ .+.++.+++++++.+....
T Consensus 239 p~~~~~~~g~~~~------~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~-----------~~~~~~~~~~~g~~~~~~~ 301 (406)
T PRK15402 239 PVILISGEQLSSY------EYGLLQVPVFGALIAGNLTLARLTSRRPLRS-----------LIRMGLWPMVAGLLLAALA 301 (406)
T ss_pred HHHHHHHhCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 1121121222111 1111222223344455556666644444433 3556777777776666543
Q ss_pred HHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007816 402 EVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIIN 479 (588)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~ 479 (588)
... ...+.+++.+..++.+++.....+..+...... +++.||+..++.++.+.+++.+++.+.+.+.
T Consensus 302 ~~~----------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 302 TVI----------SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred HHc----------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 210 012445566667778888888777766655433 4588999999999999999999988887764
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=208.49 Aligned_cols=348 Identities=17% Similarity=0.135 Sum_probs=256.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHH
Q 007816 9 FVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 88 (588)
Q Consensus 9 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~ 88 (588)
+.+....++..++.+......+.+. +++|.++.+.+++.+...++..++.++.|+++|| +|||+.+.++..+..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~ 79 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHH
Confidence 5567778888888887777666665 5679999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 007816 89 MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTV 168 (588)
Q Consensus 89 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~i 168 (588)
+..+++ +.+.++++|++.|++.+...+..++++.|.+|+++ |++.+++.+...++
T Consensus 80 ~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 134 (352)
T cd06174 80 LLAFAS-------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGL 134 (352)
T ss_pred HHHHhc-------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHH
Confidence 988875 56789999999999999999999999999999877 99999999999999
Q ss_pred HHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 007816 169 AAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYE 248 (588)
Q Consensus 169 G~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 248 (588)
|..+++.+++.+.+..+||+.|++..+..++..++.....|
T Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 175 (352)
T cd06174 135 GALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR--------------------------------------- 175 (352)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Confidence 99999999999988889999999988776665554432110
Q ss_pred hhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHh
Q 007816 249 INEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQG 328 (588)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 328 (588)
+....................+.+.+..+.
T Consensus 176 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (352)
T cd06174 176 --------------------------------------------------LLLLLALAFFLLSFGYYGLLTYLPLYLQEV 205 (352)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 000011111111111111111222222211
Q ss_pred hhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007816 329 AAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNA 408 (588)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~ 408 (588)
.+.+ ....+.......++..++.++..++.++.+||+. .+..+.++..++.+.....
T Consensus 206 ~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~i~~~~~~~~------- 262 (352)
T cd06174 206 LGLS------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL----------LLLIGLLLAALGLLLLALA------- 262 (352)
T ss_pred cCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHHHHHHHHh-------
Confidence 1111 1222334444556666666666666555555530 3566777777776666543
Q ss_pred ccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCC
Q 007816 409 FNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPS 488 (588)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 488 (588)
.+.+.+.+..++.+++.....+....+..|..|++.|++.+|+.+..+.+++.+++.+.+.+.+
T Consensus 263 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~-------- 326 (352)
T cd06174 263 --------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD-------- 326 (352)
T ss_pred --------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 1245566778888999999999999999999999999999999999999999999999887743
Q ss_pred CCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 007816 489 KQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYL 522 (588)
Q Consensus 489 ~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~ 522 (588)
+.+ +...|++.+++++++.+.++
T Consensus 327 ~~~-----------~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 327 TGG-----------YGGVFLILAALALLAALLLL 349 (352)
T ss_pred ccC-----------cchHHHHHHHHHHHHHHHhe
Confidence 112 23457788888777766554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=211.06 Aligned_cols=174 Identities=14% Similarity=0.092 Sum_probs=154.6
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHH
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 84 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ 84 (588)
++.++.+++..++.....+...+.+ +.+.+++|.+..+.+++.+.+.++..+++++.|+++|| +|||+++.++..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~ 79 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVL-TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCV 79 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhCh-HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHH
Confidence 4678899999999888888777755 56778999999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 85 LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 85 ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
++.+++++++ +++.++++|+++|++.|...+..++++.|.+|+++ |++.++++..
T Consensus 80 ~~~~l~~~~~-------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 134 (382)
T PRK10091 80 IGNAMFTLSS-------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVS 134 (382)
T ss_pred HHHHHHHHhC-------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHH
Confidence 9999999886 56789999999999999999999999999998766 8899999999
Q ss_pred HHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHH
Q 007816 165 ATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 165 ~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
...+|..+++.+++++.+..+||+.|++.++..++..+..+
T Consensus 135 ~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 135 GMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred HHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998889999999998877555544433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-22 Score=209.19 Aligned_cols=158 Identities=10% Similarity=0.042 Sum_probs=138.9
Q ss_pred HHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccc
Q 007816 18 ENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSK 97 (588)
Q Consensus 18 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~ 97 (588)
.....|...+. .+.+.+++|.++.+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+++++++
T Consensus 32 ~~~~~~~~~~~-l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~--- 106 (394)
T PRK10213 32 LIIVEFLPVSL-LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAVLLTLSCLLVSFAN--- 106 (394)
T ss_pred HHHHHHHHHhh-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHHHHHHHHHHC---
Confidence 33344444444 445678999999999999999999999999999999999 9999999999999999999988875
Q ss_pred cCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 007816 98 NLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGI 177 (588)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~ 177 (588)
+++.+++.|+++|++.|...+..+++++|++|+++ |++++++.....++|..+||.++
T Consensus 107 ----------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~ 164 (394)
T PRK10213 107 ----------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLG 164 (394)
T ss_pred ----------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999877 99999999999999999999999
Q ss_pred heeccccchhHHHHHHHHHHHHHHH
Q 007816 178 VYVFTEKSWWLGFLVSSVANFIGLI 202 (588)
Q Consensus 178 ~~i~~~~~w~~~f~i~~~~~~~~~~ 202 (588)
+++.+.++||+.|++..++.+++.+
T Consensus 165 ~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 165 SFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 9999989999999988766554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-22 Score=206.74 Aligned_cols=176 Identities=14% Similarity=0.062 Sum_probs=148.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
+..+.+....+...++.....+ ..+.+.+++|.|+.+.+++.+.+.++..++.++.|+++|| +|||+.+.++.++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~ 82 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLP-AFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFAL 82 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHH
Confidence 3344444445555554444443 4567788999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLA 165 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~ 165 (588)
+.+++..++ +.+.++++|++.|++.+...+..++++.|.+|+++ |++.+++.+..
T Consensus 83 ~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 137 (385)
T TIGR00710 83 SSLGLALSN-------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPV 137 (385)
T ss_pred HHHHHHHHc-------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHH
Confidence 999988876 56689999999999999999999999999999777 99999999999
Q ss_pred HHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007816 166 TTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGK 208 (588)
Q Consensus 166 ~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~ 208 (588)
.++|..+++.+++++.+..+||+.|++..+..++..++.+...
T Consensus 138 ~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (385)
T TIGR00710 138 LALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFIL 180 (385)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998889999999988777665555544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=213.25 Aligned_cols=381 Identities=13% Similarity=0.029 Sum_probs=244.3
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhh-----HHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHH
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAG-----ASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIF 79 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~ 79 (588)
.|++..+++..++..+++....+.++.|++ ++|.+..+ .+++.+++.++..++.++.|+++|| +|||+.+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~ 90 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRS 90 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHH
Confidence 456778888999999988888887777775 58888654 4888999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
.++..++.+++..++ +++.+++.|++.|++.+ ..+....++.|..|+++ |++.+
T Consensus 91 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~ 144 (408)
T PRK09874 91 ALGMGIVMVLMGLAQ-------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWAL 144 (408)
T ss_pred HHHHHHHHHHHHHHh-------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHH
Confidence 999999988887765 56789999999999865 46778888999998776 99999
Q ss_pred HHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCC
Q 007816 160 NFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSL 239 (588)
Q Consensus 160 ~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
++.....++|..++|.+++++.+..+||+.|++..++.++..++.+...++... +.+++
T Consensus 145 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------------- 203 (408)
T PRK09874 145 GTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQ--PVSKK------------------- 203 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccch-------------------
Confidence 999999999999999999999888899999999887766555544433332100 00000
Q ss_pred CCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007816 240 PDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQ 319 (588)
Q Consensus 240 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 319 (588)
+.. + ..+. ++.+++ ++.....+...............
T Consensus 204 ----~~~-~--------------------~~~~-------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
T PRK09874 204 ----EML-H--------------------MREV-------------VTSLKN-----PKLVLSLFVTTLIIQVATGSIAP 240 (408)
T ss_pred ----hhh-H--------------------HHHH-------------HHhCcC-----CchHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0000 000000 00011011111111111101111
Q ss_pred chhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 007816 320 LQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAG 399 (588)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~ 399 (588)
....+.....+ +.. ......+.......++.++..+...++.++++||+ .+..+.++..++++...
T Consensus 241 ~~~~~~~~~~~-~~~--~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~ 306 (408)
T PRK09874 241 ILTLYVRELAG-NVS--NIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK-----------ILITALIFSVLLLIPMS 306 (408)
T ss_pred HHHHHHHHHhc-cch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----------hHHHHHHHHHHHHHHHH
Confidence 11111111111 000 00001112222233444555555556644445443 23445554444444332
Q ss_pred HHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007816 400 LVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIIN 479 (588)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~ 479 (588)
.. .+.+.+.+..++.+++.....+.......+..|++.||+..++.+....++..+++.+.+.+.
T Consensus 307 ~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~ 371 (408)
T PRK09874 307 FV---------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS 371 (408)
T ss_pred Hh---------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH
Confidence 21 123444555567788888888888888889999999999999999999999999999888764
Q ss_pred hhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhh
Q 007816 480 AVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAA 525 (588)
Q Consensus 480 ~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~ 525 (588)
+. .++...|++.+++.+++.+..++..
T Consensus 372 ~~-------------------~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 372 AN-------------------YGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred hh-------------------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 31 1245568888888888777665543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=219.12 Aligned_cols=165 Identities=13% Similarity=0.125 Sum_probs=145.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
+.+..+++..++..+... ..+.+.+++.+++|.|..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~ 97 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFV-LITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVLFSV 97 (496)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 455566677777666555 44556678889999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLA 165 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~ 165 (588)
+.+++++++ +++.++++|++.|++.+...++...++.|.+|+++ |++.+++....
T Consensus 98 ~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~ 152 (496)
T PRK03893 98 GTLACGFAP-------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISG 152 (496)
T ss_pred HHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHH
Confidence 999999876 66789999999999999999999999999999776 99999999999
Q ss_pred HHHHHHHHhhhhheeccccchhHHHHHHHHHH
Q 007816 166 TTVAAVIGVTGIVYVFTEKSWWLGFLVSSVAN 197 (588)
Q Consensus 166 ~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~ 197 (588)
.++|..+++.+.+++.+..+||+.|++..+..
T Consensus 153 ~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~ 184 (496)
T PRK03893 153 FSIGAVVAAQVYSLVVPVWGWRALFFIGILPI 184 (496)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 99999999999999988899999998755443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-22 Score=213.45 Aligned_cols=179 Identities=9% Similarity=0.010 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHh---HHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIAN---GISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 84 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ 84 (588)
-|.++...++....+|.. .+...+++.++ |+++.+.+++.+++.++..++++++|+++|| +|||+++.++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~ 104 (452)
T PRK11273 27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAA 104 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHH
Confidence 355666666665555544 34556788888 9999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 85 LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 85 ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
++.++++++.... .+.+.+++.|+++|++.|...+.....+.|++|+++ |++.+++++.
T Consensus 105 i~~~~~~~~~~~~---------------~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~ 163 (452)
T PRK11273 105 AVMLFMGFVPWAT---------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNC 163 (452)
T ss_pred HHHHHHHhhhccc---------------ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHH
Confidence 9999888764211 256678999999999999999988889999999877 9999999999
Q ss_pred HHHHHH-HHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 165 ATTVAA-VIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 165 ~~~iG~-~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
..++|. .++|..+..+....+||+.|++.+++.++..++.++..|
T Consensus 164 ~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 164 AHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMR 209 (452)
T ss_pred HHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999886 456554333333459999999987765554444443333
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=210.78 Aligned_cols=154 Identities=15% Similarity=0.082 Sum_probs=133.8
Q ss_pred hHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007816 25 NGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDC 104 (588)
Q Consensus 25 v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~ 104 (588)
..+...+++.+++|.|..+.+++.+++.++..+++++.|+++|| +|||+++.++.++..++.+++++++
T Consensus 21 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~---------- 89 (377)
T TIGR00890 21 TWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIAD---------- 89 (377)
T ss_pred hhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHH----------
Confidence 45667889999999999999999999999999999999999999 8999999999999999999999987
Q ss_pred CCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheecccc
Q 007816 105 GKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEK 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~ 184 (588)
+++.++++|++.|+|.|...+....++.|.+| ++ |+++.++.....++|..+++.+.+.+.+..
T Consensus 90 ---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (377)
T TIGR00890 90 ---------SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITSVINLE 153 (377)
T ss_pred ---------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHHHHhcc
Confidence 66789999999999999988888888888886 45 899999999999999887655555555667
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 007816 185 SWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 185 ~w~~~f~i~~~~~~~~~~~~~ 205 (588)
+||+.|++.+++.++..+..+
T Consensus 154 ~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 154 GVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877655554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-21 Score=206.40 Aligned_cols=166 Identities=10% Similarity=0.046 Sum_probs=143.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHH
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 84 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ 84 (588)
+|+++.++..+++..++-..+...++. +.+++|.++.+.+++.+.+.++..++.+++|+++|| +|||++++++..++.
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~ 79 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKL 79 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHH
Confidence 578999999999998876655554554 467899999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 85 LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 85 ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
+++++++++. + .++.|+++|++.|+..|+..+++.|++|+++ |++++++...
T Consensus 80 ~~~~~~~~~~-------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~ 131 (393)
T PRK11195 80 LGCLLMLFGI-------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEG 131 (393)
T ss_pred HHHHHHHHHH-------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHH
Confidence 9998877764 2 3788999999999999999999999999877 9999999999
Q ss_pred HHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHH
Q 007816 165 ATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGL 201 (588)
Q Consensus 165 ~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~ 201 (588)
..++|..+||.++|++.+. .|+..+.+.+...++..
T Consensus 132 ~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~ 167 (393)
T PRK11195 132 STIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA 167 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999998764 47777777665544343
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=219.09 Aligned_cols=180 Identities=7% Similarity=-0.093 Sum_probs=141.3
Q ss_pred chHHHHHHHHHHHHHHHHH---hHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIA---NGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
|.+|.++...++..+..|. ..+.+.+.+.+++|.|..+.|++.+.+.++..++.+++|+++|| +|||+++.++.++
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~ 103 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLIL 103 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHH
Confidence 3455455444444444443 23445678889999999999999999999999999999999999 9999999999888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.++.+...... ..+++.+++.|+++|++.|...|....+++|.+|+++ |+++++++
T Consensus 104 ~~~~~~~~~~~~~~~--------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~ 163 (467)
T PRK09556 104 SAICMLGFGASLGSG--------------SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFW 163 (467)
T ss_pred HHHHHHHHHHHHhcc--------------cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEee
Confidence 888777766531100 1267889999999999999999999999999999888 99999999
Q ss_pred HHHHHHHHHHHhhhhheecccc---chhHHHHHHHHHHHHHHHHHHh
Q 007816 163 LLATTVAAVIGVTGIVYVFTEK---SWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~---~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
....++|.++++.+..++.... +||..|.+.+++.++..++.++
T Consensus 164 ~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 164 NISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred ecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999988776554432 6898888877665544444433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-22 Score=205.89 Aligned_cols=164 Identities=11% Similarity=0.087 Sum_probs=144.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHH
Q 007816 1 MLLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFG 80 (588)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~ 80 (588)
|..++|++|.++...++..++...+.+.++.|.. ++|.|..++|++.+.+.++..+++++.|+++|| +|||+.+.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~ 78 (381)
T PRK03633 1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLAS 78 (381)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHH
Confidence 4456889999999999998888777777776665 689999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 81 TLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 81 ~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
++..++.+++++++ +++.++++|+++|++.|...+.....+.|..++++ |++.++
T Consensus 79 ~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 133 (381)
T PRK03633 79 LIFAAGCAGLGLMV-------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLA 133 (381)
T ss_pred HHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence 99999999988876 56789999999999999999998888888888766 999999
Q ss_pred HHHHHHHHHHHHHhhhhheeccccchhHHHH
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKSWWLGFL 191 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~ 191 (588)
+++...++|..+|+.+++++.+...|+..+.
T Consensus 134 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 164 (381)
T PRK03633 134 AYMMVYYLGTVLGQLLVSKVSTELMSVLPWV 164 (381)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence 9999999999999999999876544444443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-22 Score=209.53 Aligned_cols=169 Identities=14% Similarity=0.051 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHH-HHHHH-----HHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTL-TNFFG-----STFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~-~~~~~-----~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
.-.+++..+++.+... ..+.+.+.+.++++.++.+.+... +.... +..+++++.|+++|| +|||+.++++..
T Consensus 17 ~~~~~~~~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~ 94 (434)
T PRK15075 17 ILRVTSGNFLEMFDFF-LFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTLS 94 (434)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHHH
Confidence 3344455555555444 355677788899998888765543 22222 224678899999999 999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
++.+++++++++++...+. ......++++|+++|++.|...+..+.+++|.+|+++ |++.+++
T Consensus 95 ~~~~~~~l~~~~~~~~~~~-----------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~ 157 (434)
T PRK15075 95 IMASGTLLIAFVPGYATIG-----------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSW 157 (434)
T ss_pred HHHHHHHHHHhCCcHHHHH-----------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHH
Confidence 9999999999987432100 0001257899999999999999999999999999888 9999999
Q ss_pred HHHHHHHHHHHHhhhhhee--------ccccchhHHHHHHHH
Q 007816 162 YLLATTVAAVIGVTGIVYV--------FTEKSWWLGFLVSSV 195 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i--------~~~~~w~~~f~i~~~ 195 (588)
+....++|..+++.+++.+ .+.++||++|++..+
T Consensus 158 ~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 158 QSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 8888888887777766554 246899999998654
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.2e-22 Score=205.26 Aligned_cols=172 Identities=13% Similarity=-0.007 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHH-HHHHHHHHHHHH
Q 007816 12 VVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLI-FGTLEVLALVML 90 (588)
Q Consensus 12 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i-~~~i~~ig~~l~ 90 (588)
.+.+++..++.....+.++.|+++++|.|..+.|++.+++.+...+..++.|+++|| +||||.+++ +..+..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHH
Confidence 456778888888888999999999999999999999999999999999999999999 899987665 455556677777
Q ss_pred HHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhh--HHHHHHHHHHH
Q 007816 91 TIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALAS--YFNFYLLATTV 168 (588)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~--~~~~~~~~~~i 168 (588)
+.++ +++.+++.|+++|.+.+...|...+++.|..|+++ |++ ..+..+...++
T Consensus 82 ~~~~-------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 136 (375)
T TIGR00899 82 AWNR-------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISL 136 (375)
T ss_pred Hhcc-------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhH
Confidence 7765 56678889999998888888888888889877544 443 35777778899
Q ss_pred HHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 169 AAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 169 G~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
|..+||.+++++.+..+||+.|++.++..++..++.++..|
T Consensus 137 g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 137 AWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred HHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999988899999999988876655555444333
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-23 Score=210.57 Aligned_cols=167 Identities=19% Similarity=0.259 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 007816 12 VVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLT 91 (588)
Q Consensus 12 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~ 91 (588)
++..++..+....+...++.++.+++|.|..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.++..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhh
Confidence 456666667767666666668999999999999999999999999999999999999 9999999999999999966666
Q ss_pred HhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH
Q 007816 92 IQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAV 171 (588)
Q Consensus 92 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ 171 (588)
+++ +.+.++++|+++|++.+...+...+++.|.+|+++ |++.+++.+...++|..
T Consensus 81 ~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~ 135 (352)
T PF07690_consen 81 FAS-------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSI 135 (352)
T ss_dssp HHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHH
T ss_pred hhh-------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhh
Confidence 653 45589999999999999999999999999999888 99999999999999999
Q ss_pred HHhhhhheeccccchhHHHHHHHHHHHHHHHHH
Q 007816 172 IGVTGIVYVFTEKSWWLGFLVSSVANFIGLIAL 204 (588)
Q Consensus 172 ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 204 (588)
++|.+++++.+..+||+.|++.+++.++..++.
T Consensus 136 ~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 136 LGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhccccccccccccchhhhhhhhH
Confidence 999999999988999999999998877776643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=210.74 Aligned_cols=169 Identities=11% Similarity=0.091 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHH
Q 007816 10 VYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVM 89 (588)
Q Consensus 10 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l 89 (588)
......++..+..+++. ...+++.+++|+|..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.++
T Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~ 117 (476)
T PLN00028 40 LSWISFFTCFVSTFAAA-PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAPAVFC 117 (476)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHH
Confidence 33333444444444433 34568889999999999999999999999999999999999 99999999999999999988
Q ss_pred HHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHH
Q 007816 90 LTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVA 169 (588)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG 169 (588)
+++++ +.+.+++.|+++|++.+... ....+++|.+|+++ |++++++.....++|
T Consensus 118 ~~~~~-------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a~g~~~~~~~~g 171 (476)
T PLN00028 118 MSLVS-------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTANGIAAGWGNLG 171 (476)
T ss_pred HHHhc-------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHHHHHHHHHHHHH
Confidence 88876 45678899999999998754 45668999999877 999999988777788
Q ss_pred HHHHhhhhheec---------cccchhHHHHHHHHHHHHHHHHHHh
Q 007816 170 AVIGVTGIVYVF---------TEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 170 ~~ig~~~~~~i~---------~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
..+++.+.+.+. ...+||+.|++.+++.++..++.++
T Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 172 GGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 777765544331 1258999999988876655554443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-22 Score=212.71 Aligned_cols=149 Identities=9% Similarity=-0.018 Sum_probs=132.1
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhH
Q 007816 36 EMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIA 115 (588)
Q Consensus 36 ~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 115 (588)
+++++..+.|++.+.+.++..++.+++|+++|| +|||+++.++.++..++.+++..+.. .+.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-----------------~~~ 131 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG-----------------GGI 131 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH-----------------cCc
Confidence 789999999999999999999999999999999 89999999999999999888766531 135
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccc-cchhHHHHHHH
Q 007816 116 AYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTE-KSWWLGFLVSS 194 (588)
Q Consensus 116 ~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~-~~w~~~f~i~~ 194 (588)
+.+++.|+++|++.|...|....+++|.+|+++ |++++++.....++|..+++.+++++.+. .+||+.|++.+
T Consensus 132 ~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~ 205 (465)
T TIGR00894 132 ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFG 205 (465)
T ss_pred hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhh
Confidence 579999999999999999999999999999877 99999999999999999999999998887 49999999988
Q ss_pred HHHHHHHHHHHhhc
Q 007816 195 VANFIGLIALAAGK 208 (588)
Q Consensus 195 ~~~~~~~~~~~~~~ 208 (588)
+..++..++++...
T Consensus 206 ~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 206 IVGCAWSLLWFVFP 219 (465)
T ss_pred HHHHHHHHHHHHHh
Confidence 87666655554433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-21 Score=204.28 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=135.0
Q ss_pred HchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCC
Q 007816 32 YFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLK 111 (588)
Q Consensus 32 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~ 111 (588)
.+.+++|.+..+.++.++++.++..++.+++|+++|| +|||++++.+..++.++++++++++
T Consensus 41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~----------------- 102 (413)
T PRK15403 41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFTT----------------- 102 (413)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHcC-----------------
Confidence 4667899999999999999999999999999999999 9999999999999999999999886
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccchhHHHH
Q 007816 112 GAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFL 191 (588)
Q Consensus 112 ~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~ 191 (588)
+.+.++++|+++|++.+...+...+++.|.+|+++ |++.+++.....++|..+||.+++++.++.+||+.|+
T Consensus 103 --~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~ 174 (413)
T PRK15403 103 --SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFA 174 (413)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 56689999999999999878888899999999777 8899999999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 007816 192 VSSVANFIGLIALAAGKC 209 (588)
Q Consensus 192 i~~~~~~~~~~~~~~~~~ 209 (588)
+.++..++..+..++..|
T Consensus 175 ~~~~~~~i~~~~~~~~lp 192 (413)
T PRK15403 175 IIAVMGLIAFVGLLLAMP 192 (413)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 988876666554444333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=205.26 Aligned_cols=160 Identities=14% Similarity=0.043 Sum_probs=139.3
Q ss_pred HhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007816 24 ANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPD 103 (588)
Q Consensus 24 ~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~ 103 (588)
...+...+++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+.+.++.++..++.++..+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~--------- 103 (398)
T TIGR00895 34 AAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFSVFTLLCALAT--------- 103 (398)
T ss_pred HHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHcc---------
Confidence 355566778888999999999999999999999999999999999 8999999999999999998888775
Q ss_pred CCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccc
Q 007816 104 CGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTE 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~ 183 (588)
+.+.+++.|++.|++.|...+...++++|.+|+++ |++.+++.....++|..+++.+++++.+.
T Consensus 104 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 167 (398)
T TIGR00895 104 ----------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPV 167 (398)
T ss_pred ----------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence 55679999999999999999999999999999777 99999999999999999999999999888
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 184 KSWWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 184 ~~w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
.+|++.|.+.++..++..++.+...|
T Consensus 168 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 193 (398)
T TIGR00895 168 FGWRSLFYVGGIAPLLLLLLLMRFLP 193 (398)
T ss_pred ccceeehhhhhhHHHHHHHHHHHhCC
Confidence 99999999886554444444333333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-21 Score=201.87 Aligned_cols=174 Identities=12% Similarity=0.077 Sum_probs=145.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 83 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~ 83 (588)
|.|-+|..++..++.....+ ..+.+.+.+.+++|+|..+.+++.+.+.++..++.+++|++.|| +|||+++.++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~ 82 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVI-VTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALM 82 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence 34556666676666655544 44455566788999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007816 84 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 163 (588)
Q Consensus 84 ~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~ 163 (588)
.++.+++++++ +++.+++.|+++|++.|...+...+++.|.+|+++ |++.++..+
T Consensus 83 ~i~~~l~~~~~-------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~ 137 (394)
T PRK03699 83 ILAVAGLMFSH-------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTD 137 (394)
T ss_pred HHHHHHHHHcc-------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHH
Confidence 99999998875 56789999999999999999999999999998766 899999888
Q ss_pred HHHHHHHHHHhhhhheec-cccchhHHHHHHHHHHHHHHHHH
Q 007816 164 LATTVAAVIGVTGIVYVF-TEKSWWLGFLVSSVANFIGLIAL 204 (588)
Q Consensus 164 ~~~~iG~~ig~~~~~~i~-~~~~w~~~f~i~~~~~~~~~~~~ 204 (588)
...++|..++|.+.+++. ...+||+.|.+.+++.++..++.
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 138 SFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 888899999998877764 46799999998777655544433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=214.96 Aligned_cols=172 Identities=9% Similarity=0.009 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHh---HHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 9 FVYVVFSALENMGFIAN---GISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 9 ~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
|.++...+......++. .+...+.+.+++|.|..+.+++.+.+.++..++.+++|+++|| +|||++++.+.++..+
T Consensus 18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~ 96 (455)
T TIGR00892 18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASL 96 (455)
T ss_pred hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHH
Confidence 44444444433322333 2334556678999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHH-HHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFY-GSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~-~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
+.+++++++ +.+.++ ..|+++|++.|...+...+++.|.++ ++ |+++.++.+.
T Consensus 97 ~~~~~~~~~-------------------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~ 150 (455)
T TIGR00892 97 GMILASFSS-------------------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMA 150 (455)
T ss_pred HHHHHHHhh-------------------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHh
Confidence 999998886 344455 45799999999877777788889885 55 8999999999
Q ss_pred HHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhh
Q 007816 165 ATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAG 207 (588)
Q Consensus 165 ~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~ 207 (588)
..++|..++|.+++++.+.+|||+.|++.+++.+++.+..++.
T Consensus 151 ~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 151 GSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred cccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888999999999888766555544433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-23 Score=205.62 Aligned_cols=178 Identities=12% Similarity=0.044 Sum_probs=162.5
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHH
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 84 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ 84 (588)
++....+++.+++|++.-|.+-+ ...-.++++|.++...|++.+.+++...+++|+.|+++|| +.||+++.+|..++.
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~iW~ 109 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFIWT 109 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHHHH
Confidence 34567788999999999997776 5557788999999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 85 LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 85 ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
++.++++++. .+|.+.+.|.+.|+|.+...|.+|++++|.+|..+ |++.++++|+
T Consensus 110 ~Av~~~~fs~-------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~ 164 (493)
T KOG1330|consen 110 LAVFASGFSN-------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYF 164 (493)
T ss_pred HHHHHHHHHH-------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhh
Confidence 9999999996 67889999999999999999999999999999888 9999999999
Q ss_pred HHHHHHHHHhhhhheeccccc-hhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 165 ATTVAAVIGVTGIVYVFTEKS-WWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 165 ~~~iG~~ig~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
++++|+.+|+..++++.+..+ |||.|+..+++.+++.++.+.+.+
T Consensus 165 ~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 165 AIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred hcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 999999999999999988655 999999999998878777666544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-20 Score=197.90 Aligned_cols=171 Identities=8% Similarity=-0.002 Sum_probs=144.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
-.+|+++...+.+++..++.+...+.+++++ +++|.|..+.+++.+.+.++..++.+++|+++|| +||||.+..+..+
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHH
Confidence 4678899999999999999888888888888 5689999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.+++...... ..+++.+++.|+++|+|.+...+...+++.|.+|+++ |+++++++
T Consensus 88 ~~~~~~~~~~~~~~---------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~ 146 (402)
T TIGR00897 88 WCVGHAAFIVFGLG---------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWF 146 (402)
T ss_pred HHHHHHHHHHHhcc---------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHH
Confidence 99988766432100 1156678899999999999988888899999999777 99999999
Q ss_pred HHHHHHHH-HHHhhhhheeccccchhHHHHHHHHH
Q 007816 163 LLATTVAA-VIGVTGIVYVFTEKSWWLGFLVSSVA 196 (588)
Q Consensus 163 ~~~~~iG~-~ig~~~~~~i~~~~~w~~~f~i~~~~ 196 (588)
+...++|. .++|.+++++.+..||+..++.....
T Consensus 147 ~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 147 WAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 99999996 58898888888888876655544433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-20 Score=198.37 Aligned_cols=176 Identities=15% Similarity=0.133 Sum_probs=133.8
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHH-HHHHHHHhhhhHHhhhcccchhHHHH-HHHHH
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNF-FGSTFLLCLVGGFISDTFLSRFATCL-IFGTL 82 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~-~~~~~~~~l~~G~l~D~~~GRr~~i~-i~~~i 82 (588)
++..|......++.+++...+.+.++.|+++++|.|..+.|++.+.+ ..+..++++.+|+ +|| +||||.++ .+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~ 91 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLL 91 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHH
Confidence 45678888889999999999999999999999999999999998765 4566677777777 999 89998765 45555
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHH-HHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGS-LYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~-R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
..++.++.++++ +++.+++. |++.|.+ +...|....+..|..++++ | ..+...++
T Consensus 92 ~~~~~~~~~~~~-------------------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~ 147 (393)
T PRK15011 92 GVLACTLFAWNR-------------------NYFVLLFVGVFLSSFG-STANPQMFALAREHADKTG---R-EAVMFSSF 147 (393)
T ss_pred HHHHHHHHHHhh-------------------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcc---c-hHHHHHHH
Confidence 556777777765 44455544 4444554 4677888888888766433 1 12445578
Q ss_pred HHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHh
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
.....++|.++||.+++++.++.|||..|++.++..++..+....
T Consensus 148 ~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 148 LRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999999988899999999988776555554443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=230.44 Aligned_cols=366 Identities=13% Similarity=0.037 Sum_probs=228.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCCh--hhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDL--AGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIF 79 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~ 79 (588)
.+++++++..++..++.++...+....+..++...++.+. ...+++.+++.++..++++++|+++|| +|||++++++
T Consensus 5 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~ 83 (1146)
T PRK08633 5 LLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIV 83 (1146)
T ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHH
Confidence 3678899999999999988888887777777777666654 447999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
.++.+++.++..++... .+++.++++|+++|++.|+..++..++++|++|+++ |++++
T Consensus 84 ~~~~~~~~~~~~~~~~~----------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~ 141 (1146)
T PRK08633 84 KLFEVGLTLLIVLAYYL----------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRAN 141 (1146)
T ss_pred HHHHHHHHHHHHHHHHH----------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhh
Confidence 98877777666554321 157789999999999999999999999999999888 99999
Q ss_pred HHHHHHHHHHHHHHhhhhheeccc--------c-chhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHH
Q 007816 160 NFYLLATTVAAVIGVTGIVYVFTE--------K-SWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVV 230 (588)
Q Consensus 160 ~~~~~~~~iG~~ig~~~~~~i~~~--------~-~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
++.....++|.++|+.+++++... + +|++.+.+..+...+..+++.+..|+.+...+...+
T Consensus 142 ~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 211 (1146)
T PRK08633 142 GLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFD---------- 211 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccc----------
Confidence 999999999999999999988654 2 344444433333222222222222221110000000
Q ss_pred HHHhcCCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 007816 231 AIKNRKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILAST 310 (588)
Q Consensus 231 ~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (588)
+ +.....+.. .+ .++...+ .+.+...+......
T Consensus 212 ----~--~~~~~~~~~-----------------------~~-------------~~~~l~~-----~~~~~~~~~~~~~~ 244 (1146)
T PRK08633 212 ----K--KKYLFPKLL-----------------------WR-------------NLKLLRS-----DRVLWLAIIGLSYF 244 (1146)
T ss_pred ----c--cccccHHHH-----------------------HH-------------HHHHHhc-----CcHHHHHHHHHHHH
Confidence 0 000000000 00 0000000 01111111111111
Q ss_pred HHHHHhhhhchhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHH
Q 007816 311 ILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVL 390 (588)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l 390 (588)
.........+...+.....+.+.. ...+.+.....++.+++.++..++.++.+++ ..+.++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~g~s~~-----~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~-----------~~~~~~~~~ 308 (1146)
T PRK08633 245 WFISQLAQANFPAYAKEVLGLDNT-----FQVQYLLAASAIGIGIGSLLAGRLSGRHIEL-----------GLVPLGALG 308 (1146)
T ss_pred HHHHHHHHHhhHHHHHHHhCCCcH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCceEc-----------cchhHHHHH
Confidence 111111111122222222222211 0123334445556666666666663322222 224456666
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHH
Q 007816 391 SAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFL 470 (588)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i 470 (588)
++++++++... .+.+.+++..++.+++.+...+..++++.+.+|.+.||+++|+.++...++.++
T Consensus 309 ~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~ 373 (1146)
T PRK08633 309 LALSLFLLPTA---------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLL 373 (1146)
T ss_pred HHHHHHHHHHh---------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHH
Confidence 66665555432 134455566677788888888888999999999999999999999999998877
Q ss_pred HHHHHHHh
Q 007816 471 SSAFVDII 478 (588)
Q Consensus 471 ~~~~~~~~ 478 (588)
++.+...+
T Consensus 374 ~~~~~~~l 381 (1146)
T PRK08633 374 FLALTTLF 381 (1146)
T ss_pred HHHHHHHH
Confidence 76666554
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-21 Score=205.50 Aligned_cols=175 Identities=9% Similarity=0.018 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHh---HHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHH
Q 007816 12 VVFSALENMGFIAN---GISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 88 (588)
Q Consensus 12 ~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~ 88 (588)
+...++.....|.. .....+++++ +|+|+.+.+++.+++.++..++.++.|+++|| +|||+.+.++.++..++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~ 106 (438)
T TIGR00712 29 FLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVML 106 (438)
T ss_pred HHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHH
Confidence 33344444444433 2344567776 59999999999999999999999999999999 8999999999999999988
Q ss_pred HHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 007816 89 MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTV 168 (588)
Q Consensus 89 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~i 168 (588)
+.+..++.. .+...+++.|++.|++.|...+....++.|.+|+++ |++++++++...++
T Consensus 107 ~~~~~~~~~---------------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~ 165 (438)
T TIGR00712 107 LMGFVPWAT---------------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNI 165 (438)
T ss_pred HHhcccccc---------------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHh
Confidence 877653211 156678899999999999999999999999999888 99999999999999
Q ss_pred HHHHHhhhhhe-eccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 169 AAVIGVTGIVY-VFTEKSWWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 169 G~~ig~~~~~~-i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
|..+++.+.+. +....+||..|++.+++.++..++.++..|
T Consensus 166 g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 166 GGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998877654 444579999999988876665544444333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-23 Score=213.46 Aligned_cols=366 Identities=27% Similarity=0.434 Sum_probs=235.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhh
Q 007816 73 FATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGA 152 (588)
Q Consensus 73 r~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~ 152 (588)
.|++++++++.++|.++++++...+.. ++..+.+.+++|..+.++|.|+..|++.++++|++++++ +
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~----------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~---~ 67 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL----------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD---D 67 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC----------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT---T
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh----------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc---h
Confidence 479999999999999998888654431 113356789999999999999999999999999999774 3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeec-CCCCChhHHHHH-HHHH
Q 007816 153 KALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQ-QPGESPLVRVAQ-VLVV 230 (588)
Q Consensus 153 ~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~ 230 (588)
..|.+.++++|+++|+|+.+++...+++.++.+|.+.|.++.+.+++++++++...+++.+. ++.+++..+..+ +...
T Consensus 68 ~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 147 (372)
T PF00854_consen 68 SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVA 147 (372)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHH
Confidence 34889999999999999999999999999999999999999999999999999999998887 666776666333 3333
Q ss_pred HHHhcCCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCccc-ccccchHHHHHHHHHHHHHHH
Q 007816 231 AIKNRKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRV-CTVTQVEEVKILTRMMPILAS 309 (588)
Q Consensus 231 ~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 309 (588)
..+++....|....++.......+.. ..... .............. ..|.. ++.++.+..+.+.+.++.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~k~~~~~~~~~~~ 219 (372)
T PF00854_consen 148 AFKKRKLAVPKGSSWLDWALFQYSER---SIFGI--IVFIRAAVIFFPEI---FFWALFCQVQRVEELKALIRFLPIFLF 219 (372)
T ss_dssp HHHHHCCCH-HHHHHHHHHHHHHCCC---CCCCC--CCHHHHHHHHCCCH---HHHTTTSSTTTHHHCCHHHCHHHCCCH
T ss_pred HHHHhhcccccchHHHHHhhhhhhhh---hhhhh--hhhccchhhhhhhh---hhcccCCccceeeeeeeeeeccccCeE
Confidence 44444444432222332221111100 00000 00000000000000 01110 112334445556666666666
Q ss_pred HHHHHHhhhhchhHHHHHhhhcCCCCCc-ccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHH
Q 007816 310 TILMNTCLAQLQTFSITQGAAMDPHLGS-IKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGL 388 (588)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~ 388 (588)
..++.....+.......+...++....+ ..+++..++.++.+.+++..|+.|++++|+.|+. +..+...++.+|+
T Consensus 220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~----~~~~~~~k~~~G~ 295 (372)
T PF00854_consen 220 WIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRG----IQPSPPQKFGIGM 295 (372)
T ss_dssp HHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-
T ss_pred EEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhc----ccchhhhhhhHHH
Confidence 6666677777777777777777655556 7899999999999999999999999999988833 2468899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHH
Q 007816 389 VLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLS 465 (588)
Q Consensus 389 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~ 465 (588)
+++.++++.....+..+.....+.+ ..+.+|.+..+++..++|.+..+...+..+|.+|++..+..+|++.+...
T Consensus 296 ~~~~~~~~~~~~v~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~ 370 (372)
T PF00854_consen 296 VFAILAMFVAAIVEIRRLCYAQPCG--KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSA 370 (372)
T ss_dssp HHHHHHHHTTTHHHH---HH----T--T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhhhhcccccC--CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhc
Confidence 9999999998887764433333322 33447778999999999999999999988888888888777777766543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-20 Score=195.21 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=135.9
Q ss_pred HHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 007816 29 MVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSS 108 (588)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~ 108 (588)
..+.+.+++|.|+.+.+++.+++.++..++.+++|+++|| +|||+.+.++.++..++.+++.+++
T Consensus 13 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~-------------- 77 (377)
T PRK11102 13 ALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQ-------------- 77 (377)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHc--------------
Confidence 3345556799999999999999999999999999999999 8999999999999999999998876
Q ss_pred cCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccchhH
Q 007816 109 CLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWL 188 (588)
Q Consensus 109 ~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~ 188 (588)
+.+.+++.|+++|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.+++++.+..+||+
T Consensus 78 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 146 (377)
T PRK11102 78 -----TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHA 146 (377)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 56679999999999999999999999999999777 9999999999999999999999999988889999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 007816 189 GFLVSSVANFIGLIALAAG 207 (588)
Q Consensus 189 ~f~i~~~~~~~~~~~~~~~ 207 (588)
.|++.++..++..++..+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 147 IFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9998877766555544433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-20 Score=193.88 Aligned_cols=173 Identities=13% Similarity=0.103 Sum_probs=144.9
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
|-+....+..+..-.+..... ...+.+.+++|.|..+.+++.+.+.++..++.++.|+++|| +|||+.+.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i 80 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYL-VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFII 80 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHH
Confidence 333444455555555555444 44566778899999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLA 165 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~ 165 (588)
+.+++..++ +.+.++++|+++|++.+...+...+++.|.+|+++ |++.+++.+..
T Consensus 81 ~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~ 135 (392)
T PRK10473 81 ASLLCSLAE-------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGI 135 (392)
T ss_pred HHHHHHHhC-------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHH
Confidence 999888775 45678899999999999999999999999999777 99999999999
Q ss_pred HHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHH
Q 007816 166 TTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 166 ~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
.++|..++|.+++.+.+..+||+.|++..+..++..++.+
T Consensus 136 ~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~ 175 (392)
T PRK10473 136 TCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL 175 (392)
T ss_pred HHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887788999999998776555555433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-20 Score=195.71 Aligned_cols=166 Identities=11% Similarity=0.090 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHH
Q 007816 11 YVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVML 90 (588)
Q Consensus 11 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~ 90 (588)
+....++..++.... ....+++.+++|.|+.+.+++.+++.++..++.++.|+++|| +|||+.+.++..+..++.+++
T Consensus 13 ~~~~~~~~~~~~~~~-~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~ 90 (394)
T PRK11652 13 LVLLVAVGQMAQTIY-VPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSIFILGTLVA 90 (394)
T ss_pred HHHHHHHHHHHHHHH-hccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHH
Confidence 334444444443333 334566778999999999999999999999999999999999 899999999999999999988
Q ss_pred HHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 007816 91 TIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAA 170 (588)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~ 170 (588)
.+++ +.+.+++.|+++|++.+...+....+..|..++++ |++..++......+|.
T Consensus 91 ~~~~-------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 145 (394)
T PRK11652 91 LFAH-------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSP 145 (394)
T ss_pred HHHc-------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHH
Confidence 8775 56689999999999999888888889999888666 8899999999999999
Q ss_pred HHHhhhhheeccccchhHHHHHHHHHHHHHHHH
Q 007816 171 VIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIA 203 (588)
Q Consensus 171 ~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 203 (588)
.++|.+++++.+..+||+.|++.++..++..++
T Consensus 146 ~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 146 LLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 999999999888889999999987665444433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-21 Score=201.52 Aligned_cols=395 Identities=11% Similarity=0.053 Sum_probs=229.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
..++|.+|.+....++..+++..+.+.++.|+++++|+|..+.|++.+.+.++..+++++.|+++|| +|||+.++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~ 84 (420)
T PRK09528 6 YLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIIS 84 (420)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999 999999988777
Q ss_pred HHHHHHHHHHH---hhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhH
Q 007816 82 LEVLALVMLTI---QAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASY 158 (588)
Q Consensus 82 i~~ig~~l~~~---a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~ 158 (588)
+..++...... ++... .......++++++.|.+.....+....+..+. + +.++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~g~~ 142 (420)
T PRK09528 85 GLLVLFGPFFIYVFAPLLQ--------------YNILLGAIVGGIYLGFGFLAGAGAIEAYIERV-S-------RRSGFE 142 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhhhhccchhhhhhHHHHH-H-------hhcccc
Confidence 66655432211 11000 00111123344444444444444444433221 1 126677
Q ss_pred HHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCC
Q 007816 159 FNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLS 238 (588)
Q Consensus 159 ~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (588)
++..+...++|..++|.+++++.+ .+|+.+|++.++..+++.++++...++.++.+.. ++ .+
T Consensus 143 ~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~--~~ 204 (420)
T PRK09528 143 YGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKV---------------AN--AL 204 (420)
T ss_pred chhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhh---------------cc--ch
Confidence 888888889999999999998865 5899999988877666555554433221100000 00 00
Q ss_pred CCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 007816 239 LPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLA 318 (588)
Q Consensus 239 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (588)
.++ .+.....+.... ++ .+.+.............+....
T Consensus 205 ~~~----------------------~~~~~~~~~~~~-------------l~------~~~~~~l~l~~~~~~~~~~~~~ 243 (420)
T PRK09528 205 GAN----------------------ASAVSLKDALAL-------------LK------LPKFWFLVLYVIGVACFYDVFD 243 (420)
T ss_pred hcc----------------------cccccHHHHHHH-------------cc------CCCeEeehHHHHHHHHHHHHHH
Confidence 000 000000000000 00 0000011111111111111122
Q ss_pred hchhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 007816 319 QLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVA 398 (588)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~ 398 (588)
+..+.+..+.... ...+ ....+.....+.+...+..++..++.+++++|+. +..+.++.++++.+.
T Consensus 244 ~~~~~~~~~~~~~-~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-----------~~~~~~l~~~~~~l~ 309 (420)
T PRK09528 244 QQFPNFFASFFAT-PEQG--TRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA-----------LLLAGTIMAVRIIGS 309 (420)
T ss_pred HHHHHHHHHHHhc-cCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-----------hHHHHHHHHHHHHHH
Confidence 2222222211111 0100 0111223333344444555666666555565542 556666666666555
Q ss_pred HHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHH-HHHHHHHHHHHHHHHHHH
Q 007816 399 GLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSF-TYLSLSFGYFLSSAFVDI 477 (588)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~-~~~~~~l~~~i~~~~~~~ 477 (588)
++. .+.++++...++.+++.....+....++.+.+|++.|+...+. +++...+++.+++.+.+.
T Consensus 310 ~~~---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~ 374 (420)
T PRK09528 310 GFA---------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGN 374 (420)
T ss_pred Hhc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHH
Confidence 432 2344555556667777777777778899999999999987665 566678888898888887
Q ss_pred hhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Q 007816 478 INAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAA 526 (588)
Q Consensus 478 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~ 526 (588)
+.+.. +++..|+..+++.++..++.++..+
T Consensus 375 l~~~~-------------------G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 375 LYDSI-------------------GFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHhh-------------------CchHHHHHHHHHHHHHHHHHHHHhc
Confidence 65411 2345688878777776665555443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=202.45 Aligned_cols=157 Identities=13% Similarity=0.025 Sum_probs=137.9
Q ss_pred hHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007816 25 NGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDC 104 (588)
Q Consensus 25 v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~ 104 (588)
..+...+++.+++|.|..+.+++.+++.++..++.+++|+++|| +|||+++.++.++..++.+++++++
T Consensus 13 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~---------- 81 (379)
T TIGR00881 13 NFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFST---------- 81 (379)
T ss_pred hhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHhh----------
Confidence 34445668889999999999999999999999999999999999 8999999999999999999999886
Q ss_pred CCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHh-hhhheeccc
Q 007816 105 GKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGV-TGIVYVFTE 183 (588)
Q Consensus 105 ~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~-~~~~~i~~~ 183 (588)
+.+.++++|++.|++.|...+...++++|.+|+++ |++.+++.....++|..+++ .+++.+...
T Consensus 82 ---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 146 (379)
T TIGR00881 82 ---------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAEL 146 (379)
T ss_pred ---------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999877 99999999999999999999 566677777
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhh
Q 007816 184 KSWWLGFLVSSVANFIGLIALAAG 207 (588)
Q Consensus 184 ~~w~~~f~i~~~~~~~~~~~~~~~ 207 (588)
.+||+.|++.+++.++..++.+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~ 170 (379)
T TIGR00881 147 YSWHWVFIVPGIIAIIVSLICFLL 170 (379)
T ss_pred CCchhHHHHHHHHHHHHHHHHhee
Confidence 899999998877655554444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-20 Score=192.89 Aligned_cols=172 Identities=14% Similarity=0.129 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH--HchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIANGISMVL--YFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
.+.++..-.....++++.....+. .+++++|.++.+.+++.+++.++..++.+++|+++|| +|||+++.++..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~ 83 (401)
T PRK11043 5 KGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFAL 83 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHH
Confidence 444444444455555555544443 3788999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLA 165 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~ 165 (588)
+.+++++++ +.+.++++|+++|+|.+...+...+++.|.+++++ +++.++.....
T Consensus 84 ~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 138 (401)
T PRK11043 84 GSLGMLWVE-------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPL 138 (401)
T ss_pred HHHHHHHhc-------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHH
Confidence 999888876 56679999999999999988888999999998766 78888888888
Q ss_pred HHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHH
Q 007816 166 TTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 166 ~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
.++|..++|.+++++.+..+||+.|++..+..++..+..+
T Consensus 139 ~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 139 VALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998889999999988777655554443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-21 Score=208.54 Aligned_cols=380 Identities=13% Similarity=0.026 Sum_probs=230.0
Q ss_pred hccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchh
Q 007816 35 NEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAI 114 (588)
Q Consensus 35 ~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~ 114 (588)
+..+.+.....+..+++.+|..+|+++.|+++|+ +|||++++++.++.+++.++.++++ +
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~-------------------~ 170 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP-------------------N 170 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC-------------------c
Confidence 5567788889999999999999999999999999 9999999999999999999999998 6
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHH
Q 007816 115 AAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSS 194 (588)
Q Consensus 115 ~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~ 194 (588)
++.+++.|+++|++.+....+...+++|+.++++ |+...++ ......|+.+++.+++++.. +||+.+++..
T Consensus 171 ~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~ 241 (521)
T KOG0255|consen 171 YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIIS 241 (521)
T ss_pred HHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 7789999999999999999999999999999988 9999999 77777888888888888876 9999999988
Q ss_pred HHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhcccc-cccC-----CCcchh
Q 007816 195 VANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTW-ERIP-----HANQFR 268 (588)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~-~~~~-----~~~~~~ 268 (588)
++.++.+++++. .||+|+|+..+++.+++.+. ++.. ..+...
T Consensus 242 ~~~~~~~~~~~l--------------------------------~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~ 289 (521)
T KOG0255|consen 242 IPSGLFLLLWFL--------------------------------PPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKE 289 (521)
T ss_pred HHHHHHHHHHHc--------------------------------cCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHH
Confidence 876655554221 22444444444333333322 1100 000000
Q ss_pred hhhhh-ccCCCCC---CCCCCccc-ccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHhhhcCCCCCcccccCC
Q 007816 269 CLDKA-AIMPKDS---AVAAPWRV-CTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTS 343 (588)
Q Consensus 269 ~~~~~-~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (588)
..+.. ..+.... .++..+.+ ++..+ .+++.+... +. +......+.........+..+ ..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~~----~~---~~~~~~~y~gl~~~~~~lg~~-------~~ 353 (521)
T KOG0255|consen 290 LLRLELLLRPLKLLFTEPKISFLDLFRTPR--LRYRTLYLL----FI---WFVFSLVYYGLSLNVSGLGGN-------IY 353 (521)
T ss_pred HHHHHHHhhHhhhhccCCCCchhhhhcCHH--HHHHHHHHH----HH---HHHHhHHHHhhhhhhhhcCch-------HH
Confidence 00000 0000000 00011111 11110 112221111 11 111110000011111111111 11
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHH
Q 007816 344 SIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLS 423 (588)
Q Consensus 344 ~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (588)
.........-...........++.+||.. ...+.++..+++++.++.... ...+...
T Consensus 354 ~~~~~~~~~~~p~~~~~~~~~~~~gR~~~-----------~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 410 (521)
T KOG0255|consen 354 LNFTLSGLVELPAYFRNGLLLPEFGRRPP-----------LFLSLFLAGIGLLLFGWLPDD------------LGGWLHW 410 (521)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhCcHHH-----------HHHHHHHHHHHHHHHHHhhcc------------chhHHHH
Confidence 11111111222222222334444455553 567777777777777765211 1101122
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcch
Q 007816 424 FQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNV 503 (588)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 503 (588)
....+...+........+.+..|+.|+..|+.+.+.......+++++++.+...... +.+ .
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-----------~~~-------~- 471 (521)
T KOG0255|consen 411 ILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-----------MFP-------L- 471 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hcc-------c-
Confidence 222333334444444458899999999999999999999999999999887755432 110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCC
Q 007816 504 NLFYWFLAIVSVLNLVLYLYAAAWYKYKPEN 534 (588)
Q Consensus 504 ~~~f~~~a~~~~~~~v~~~~~~~e~~~~~le 534 (588)
..+..++.++.+...+...+.|||+++.+.
T Consensus 472 -~~~~~~~~~~~l~~~~~~~~lpet~~~~l~ 501 (521)
T KOG0255|consen 472 -LGLILFGWLALLLGLLSLLLLPETKGKPLP 501 (521)
T ss_pred -chHHHHHHHHHHHHHHHHhcCcccCCCCCc
Confidence 012336777777777777889999998873
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-19 Score=192.63 Aligned_cols=362 Identities=14% Similarity=0.078 Sum_probs=247.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|+|..++..++..+++...-.-.+.-++. ++.-|+...+++..+..+...+..+++|.++|| +.|||+++.+.++
T Consensus 7 lr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~ 84 (524)
T PF05977_consen 7 LRNRNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLL 84 (524)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHH
Confidence 78899999999999999998765555555554 567789999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..+..++.++..... ..+.+.+++.-++.|++.++..|+-.+++.|+.|+++ ..++.++.
T Consensus 85 ~~~~~~~L~~l~~~~--------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~ 144 (524)
T PF05977_consen 85 RALVALLLAVLAFFG--------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALN 144 (524)
T ss_pred HHHHHHHHHHHHHhC--------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHH
Confidence 888776666543222 2367889999999999999999999999999999877 88999999
Q ss_pred HHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCC
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDN 242 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 242 (588)
.+..|+.-.+||.++|.+....|-.+.|.++++..++....+...+++...++ .|.
T Consensus 145 s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~-----------------------~~~- 200 (524)
T PF05977_consen 145 SISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSS-----------------------LPR- 200 (524)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc-----------------------cch-
Confidence 99999999999999999988888889999998876665544443222110000 000
Q ss_pred chhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchh
Q 007816 243 PEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQT 322 (588)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 322 (588)
+.... + ..+. ++ .....+.+...+.......++...+.....
T Consensus 201 -e~~~~-~------------------l~~G-------------~r-----yv~~~~~l~~~l~~~~~~~l~~~a~~aLlP 242 (524)
T PF05977_consen 201 -ERFFS-A------------------LREG-------------LR-----YVRSSPPLRSVLLRSFLFNLFASAVWALLP 242 (524)
T ss_pred -hhhhh-h------------------HHHH-------------HH-----HHhcchHHHHHHHHHHHHHHhhhHHHHhhh
Confidence 00000 0 0000 00 000011111111111111111111111122
Q ss_pred HHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 007816 323 FSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVE 402 (588)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~ 402 (588)
.+..+..+.+ ....+.+....+++.++++.+..++ .+|. +..+.+..+.++.+++++.+++.
T Consensus 243 l~a~~~l~~~------a~~yGll~a~~gvGai~Gal~~~~l----~~~~-------~~~~lv~~~~~~~a~~~~~lal~- 304 (524)
T PF05977_consen 243 LFARDVLGGG------ASGYGLLLAAFGVGAILGALLLPRL----RRRL-------SSRRLVLLASLLFALALLLLALS- 304 (524)
T ss_pred HHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHHHHHh----hccc-------CcchhhHHHHHHHHHHHHHHhcc-
Confidence 2222222221 2223445555667777777766655 2222 22334556666677666665543
Q ss_pred HHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007816 403 VIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINA 480 (588)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~ 480 (588)
.+.+...+.+++.|++....+....+...+..|+++||+..|++.+....+..+|..+.+.+.+
T Consensus 305 --------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 305 --------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677888999888899999999999999999999999999888888999998888755
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-20 Score=192.08 Aligned_cols=388 Identities=11% Similarity=0.046 Sum_probs=234.6
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHH
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 84 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ 84 (588)
+|.+|......++...+...+.+.++.|+++++|++..+.+++.+++.++..+++++.|+++|| +|||+.++.+.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~ 79 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLL 79 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999 899999998877776
Q ss_pred HHHHHHH---HhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 85 LALVMLT---IQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 85 ig~~l~~---~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
++..... +..... ......++++|++.|++.+...+....+..|..++ ++..++.
T Consensus 80 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~g~ 137 (396)
T TIGR00882 80 VLFAPFFIYVFGPLLQ--------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNFEYGK 137 (396)
T ss_pred HHHHHHHHHHhhhHHH--------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--------cccccch
Confidence 6544322 111000 01234567789999999999999999888775431 3456677
Q ss_pred HHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCC
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPD 241 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 241 (588)
.....++|.++||.+++.+.+ .+|+.+|++.+.+.++..++.+...++. ++++.. ++. .+ +
T Consensus 138 ~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----------~~~-~~-~- 198 (396)
T TIGR00882 138 ARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATV-----------ANA-LG-A- 198 (396)
T ss_pred hhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhh-----------hcc-cc-c-
Confidence 777889999999999988864 5999999998877665554443322210 000000 000 00 0
Q ss_pred CchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 007816 242 NPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQ 321 (588)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 321 (588)
++ ..++ ..+ ++. ..++ |..+..+...+.....+....+..
T Consensus 199 -----------------~~--~~~~--~~~--------------~~~----~l~~-~~~~~~~l~~~~~~~~~~~~~~~~ 238 (396)
T TIGR00882 199 -----------------NA--SAFS--LKL--------------ALE----LFRQ-RKFWMFVLYVVGVACVYDVFDQQF 238 (396)
T ss_pred -----------------cc--CCCC--HHH--------------HHH----HHcC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 000 000 0000 111111111111111111111122
Q ss_pred hHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 007816 322 TFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLV 401 (588)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~ 401 (588)
..+...... ....+ ....+.......+...+..+...++.++.++|+ .+.++.++++++..+....
T Consensus 239 ~~y~~~~~~-~~~~~--~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~-----------~l~~~~~l~~l~~~~~~~~ 304 (396)
T TIGR00882 239 ANFFTSFFA-TPQQG--TRVFGYVTTMGELLNALIMFCAPLIINRIGAKN-----------ALLIAGTIMSVRIIGSSFA 304 (396)
T ss_pred HHHHHHhcc-ccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------hHHHHHHHHHHHHHHHHhc
Confidence 222222111 00000 001122222233344444455555544445443 2556666666655543321
Q ss_pred HHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q 007816 402 EVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSF-TYLSLSFGYFLSSAFVDIINA 480 (588)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~-~~~~~~l~~~i~~~~~~~~~~ 480 (588)
.+.+++.+..++.+++..........+..+..|++.++++.+. .+....+++.+++.+.+.+.+
T Consensus 305 ---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~ 369 (396)
T TIGR00882 305 ---------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD 369 (396)
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2344455556667777666666677788888999999887766 567788999999888887754
Q ss_pred hhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 007816 481 VTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYL 522 (588)
Q Consensus 481 ~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~ 522 (588)
.. +++..|.+.+++.++..++..
T Consensus 370 ~~-------------------G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 370 SI-------------------GFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred hc-------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 11 345568888877777666543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-19 Score=189.42 Aligned_cols=369 Identities=9% Similarity=-0.013 Sum_probs=229.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHH----HHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATC----LIF 79 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i----~i~ 79 (588)
+.|+.+.+.+..++...++-...+.++.|+ +++|.|..++|++.+++.+...+++++.|+++|| +|||+.. .++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~ 79 (382)
T TIGR00902 2 QLQPFRWLALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALA 79 (382)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHH
Confidence 345667777788887777666666666776 5789999999999999999999999999999999 8985433 222
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
..++.+ +++..++ +.+.+++.|+++|.+.+...|...++..|. +++ |++.+
T Consensus 80 ~~l~~~--~~~~~~~-------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~ 130 (382)
T TIGR00902 80 SAIFAA--AFSAGAH-------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDY 130 (382)
T ss_pred HHHHHH--HHHHhhh-------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCc
Confidence 222222 1222333 577899999999999999999988887653 233 78889
Q ss_pred HHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCC
Q 007816 160 NFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSL 239 (588)
Q Consensus 160 ~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
+......++|.+++|.+++++.+.+|||..|++......+.. +.+...|+. ++++++ . .
T Consensus 131 g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~---~~~~~~----------------~-~ 189 (382)
T TIGR00902 131 GKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTI---PPKDAI----------------P-E 189 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCC---CCCccc----------------c-c
Confidence 999999999999999999999999999999988655432222 222222210 000000 0 0
Q ss_pred CCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007816 240 PDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQ 319 (588)
Q Consensus 240 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 319 (588)
++ ..+. +.++ +..+ .|+.+..+......+.....+..
T Consensus 190 ~~---------------------~~~~-----------------~~~~----~~l~-~~~~~~~l~~~~l~~~~~~~~~~ 226 (382)
T TIGR00902 190 DE---------------------SQGD-----------------SAFI----ALLK-NPMNLRFLAAVCLIQGAHAAYYG 226 (382)
T ss_pred cc---------------------cccc-----------------hhHH----HHHc-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 0000 0000 12222222111111111111122
Q ss_pred chhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 007816 320 LQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAG 399 (588)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~ 399 (588)
+.+.+. +..+.+. ...+.......+..++..++.+++.++++.| +.+.+|.+++++....+.
T Consensus 227 ~~~~~l-~~~g~s~------~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~-----------~~l~~~~~~~~~~~~~~~ 288 (382)
T TIGR00902 227 FSAIYW-QAAGISA------SATGLLWGIGVLAEIIIFAFSNKLFQNCSAR-----------DLLLISAIACVGRWAIIG 288 (382)
T ss_pred HHHHHH-HHCCCCH------hHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH-----------HHHHHHHHHHHHHHHHHH
Confidence 222222 2122221 1122333345555566666666664444333 346678888888777665
Q ss_pred HHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHh
Q 007816 400 LVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTY-LSLSFGYFLSSAFVDII 478 (588)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~-~~~~l~~~i~~~~~~~~ 478 (588)
.. .+.+.++..-++.++..+...+....++.+. |.+.|++++++++ ....++..+++.+.+.+
T Consensus 289 ~~---------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l 352 (382)
T TIGR00902 289 AI---------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFI 352 (382)
T ss_pred hH---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2445556666888899999999999999988 9999999999976 46778899999998887
Q ss_pred hhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 007816 479 NAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLY 521 (588)
Q Consensus 479 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~ 521 (588)
.+.. + ...|+..+++++++.+++
T Consensus 353 ~~~~-------------------g-~~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 353 YPTL-------------------G-AGTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHhc-------------------c-HHHHHHHHHHHHHHHHHH
Confidence 5521 1 135777787777665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=187.57 Aligned_cols=175 Identities=9% Similarity=0.007 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIANGIS---MVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 84 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ 84 (588)
-+.+....++..++||-+--+ +.+++.++.++|.+|.|.+.+++.+.+.++-++.|.++|| .+.|+.+-+++++..
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsa 105 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHH
Confidence 456677777777777876554 4489999999999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 85 LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 85 ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
+..++.++++ +.+.+.+.-++.|+--|.-.|.+...++..++.++ ||+..+++..
T Consensus 106 i~nil~Gfs~-------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~ 160 (448)
T COG2271 106 IVNILFGFSP-------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNT 160 (448)
T ss_pred HHHHHHhhhh-------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehh
Confidence 9999999997 45578888899999999999999999999999888 9999999999
Q ss_pred HHHHHHHHHhhhh--heeccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007816 165 ATTVAAVIGVTGI--VYVFTEKSWWLGFLVSSVANFIGLIALAAGK 208 (588)
Q Consensus 165 ~~~iG~~ig~~~~--~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~ 208 (588)
+.|+|..+.|.+. +++..+.+||..|++++++.++..++.++..
T Consensus 161 shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~ 206 (448)
T COG2271 161 SHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL 206 (448)
T ss_pred hhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998 8888888999999999998666655555443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=194.50 Aligned_cols=171 Identities=11% Similarity=0.029 Sum_probs=141.7
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
|++|..++..++...+.+...+.++.++++++|+|..+.+++.+.+.++..++++++|+++|| +|||+.+.++.++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i 79 (366)
T TIGR00886 1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAI 79 (366)
T ss_pred CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 467888888888888888777777768999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLA 165 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~ 165 (588)
+.+++++++. +++.++++|+++|++.+.. +...++++|.+|+++ |++.++++...
T Consensus 80 ~~~~~~~~~~------------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~ 134 (366)
T TIGR00886 80 PCLWAGLAVQ------------------SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGW 134 (366)
T ss_pred HHHHHHHHhh------------------hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHH
Confidence 9999888751 4567899999999997654 567889999999877 99999999888
Q ss_pred HHHHHHHHhhhhheecc----------ccchhHHHH-HHHHHHHHHHH
Q 007816 166 TTVAAVIGVTGIVYVFT----------EKSWWLGFL-VSSVANFIGLI 202 (588)
Q Consensus 166 ~~iG~~ig~~~~~~i~~----------~~~w~~~f~-i~~~~~~~~~~ 202 (588)
.++|..+++.+++.+.. +.+||+.|+ +..+...+..+
T Consensus 135 ~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 182 (366)
T TIGR00886 135 GNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPAL 182 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHH
Confidence 88888888777655543 348999994 43444333333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-20 Score=193.73 Aligned_cols=376 Identities=12% Similarity=0.112 Sum_probs=236.5
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhH
Q 007816 36 EMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIA 115 (588)
Q Consensus 36 ~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 115 (588)
++++|..|.+++.+++..|+.++.+.+|+++|| ||-|+++.++.++..+++++.+.+... +.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~~-----------------~~ 128 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAASI-----------------GF 128 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHh-----------------cc
Confidence 588999999999999999999999999999999 999999999999999999999999743 34
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccc-cchhHHHHHHH
Q 007816 116 AYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTE-KSWWLGFLVSS 194 (588)
Q Consensus 116 ~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~-~~w~~~f~i~~ 194 (588)
+.+++.|++||++.|...|+...+.+.++|+++ |+++.++.+....+|.+++..++|++.+. +||+++|++.+
T Consensus 129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g 202 (466)
T KOG2532|consen 129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG 202 (466)
T ss_pred hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence 478999999999999999999999999999888 99999999999999999998899999887 99999999999
Q ss_pred HHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhc
Q 007816 195 VANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAA 274 (588)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (588)
+..++..+++++....-+..++.- +++++.. +++.+
T Consensus 203 ~~g~i~~~~w~~~~~d~P~~h~~i-----------------------s~~El~~---------------------I~~~k 238 (466)
T KOG2532|consen 203 IVGLIWFILWFLFYSDSPSKHPNI-----------------------SEKELKY---------------------IEKGK 238 (466)
T ss_pred HHHHHHHHHHHHHhcCCcccCCCC-----------------------CHHHHHH---------------------HHhcc
Confidence 998888887766543222111110 1111111 11000
Q ss_pred cCCCCC-CCCCCccc-ccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHhhhcCCCCCcccccCCcccchhHHH
Q 007816 275 IMPKDS-AVAAPWRV-CTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLF 352 (588)
Q Consensus 275 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 352 (588)
.....+ ..+.||+. +++. .++....-.+..........++.+.++.+..+++.... +...+...+...+.
T Consensus 239 ~~~~~~~~~~vP~~~i~ts~------~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~--G~~salP~l~~~~~ 310 (466)
T KOG2532|consen 239 SEAHVKKKPPVPYKAILTSP------PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRET--GFLSALPFLAMAIV 310 (466)
T ss_pred cccccCCCCCCCHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhh--hHHHHHHHHHHHHH
Confidence 000000 02345642 2211 11111111111112223334444555565566654422 33334444555566
Q ss_pred HHHHHHhhhHhHHhhhhhccCCCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHH
Q 007816 353 MSILLPLYEFFFVPFARKITGHPSGITQLQRV--GIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFG 430 (588)
Q Consensus 353 ~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~--~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (588)
.++.+.+.|++ .+| ... .+..+++ .++....++.++++++.. ... ...+...+.+...+.+
T Consensus 311 k~~~g~lsD~l----~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~--------~~~-~~~a~~~l~~~~~~~g 373 (466)
T KOG2532|consen 311 KFVAGQLSDRL----TFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS--------DEH-RLLAVILLTIAIGLSG 373 (466)
T ss_pred HHHHHHHHHHH----hhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC--------CCc-chHHHHHHHHHHHHcc
Confidence 66666777766 333 111 1122222 344555555555554431 000 0011222222222222
Q ss_pred HHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHH
Q 007816 431 IADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFL 510 (588)
Q Consensus 431 ~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~ 510 (588)
+.... .+.-..+.+|. +-+..+|+.+....++.++++.+.+.+.. + + +....+.+|++.
T Consensus 374 ~~~~G----f~~~~~~~apq-~a~~l~g~~~~~~~~~~~~~P~~vg~~~~--------------~-~-t~~eW~~VF~i~ 432 (466)
T KOG2532|consen 374 FNISG----FYKNHQDIAPQ-HAGFVMGIINFVGALAGFIAPLLVGIIVT--------------D-N-TREEWRIVFLIA 432 (466)
T ss_pred cchhh----hHhhhhhccch-HHHHHHHHHHHHHHHHHHHHHHheeeEeC--------------C-C-CHHHHHHHHHHH
Confidence 22222 22222222454 46899999999999999999888876531 0 1 223456789999
Q ss_pred HHHHHHHHHHHHHhh
Q 007816 511 AIVSVLNLVLYLYAA 525 (588)
Q Consensus 511 a~~~~~~~v~~~~~~ 525 (588)
+++.+++.+++.++.
T Consensus 433 a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 433 AGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHhchheeEee
Confidence 999988887766553
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=216.02 Aligned_cols=374 Identities=9% Similarity=-0.009 Sum_probs=218.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHH----HHHHchhccCCCh-hhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGIS----MVLYFKNEMHFDL-AGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATC 76 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i 76 (588)
+++.+.+..++..+++..++-+..... +...+....+.+. ...+++.+++.+...++++++|+++|| +|||+++
T Consensus 7 l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~ 85 (1140)
T PRK06814 7 LMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLA 85 (1140)
T ss_pred hhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHH
Confidence 467788888888888877764433222 2223344444333 456888889999999999999999999 9999986
Q ss_pred HH--HHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhh
Q 007816 77 LI--FGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKA 154 (588)
Q Consensus 77 ~i--~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~ 154 (588)
.. ...+.+.+..+.++.. .++++++++|+++|++.++..|+..+++.|++++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~------------------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------ 141 (1140)
T PRK06814 86 KILKFAEIGIAALAIYGFHL------------------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------ 141 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------
Confidence 44 2222222222222221 167789999999999999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHh
Q 007816 155 LASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKN 234 (588)
Q Consensus 155 Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (588)
|++++++.+...++|.++||.++|++....+|++.|.+.++..++..++.+. .++....++....
T Consensus 142 ~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------- 206 (1140)
T PRK06814 142 LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLF-IPKTGNAAPDLKI-------------- 206 (1140)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhh-CCCCCCCCCCCee--------------
Confidence 9999999999999999999999999998899999985544444433333322 2221100000000
Q ss_pred cCCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 007816 235 RKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMN 314 (588)
Q Consensus 235 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (588)
+ .....+ ..+ .++. ....+.++......+...+..
T Consensus 207 ------~-~~~~~~--------------------~~~-------------~~~~-----~~~~~~~~~~~~~~~~~~~~~ 241 (1140)
T PRK06814 207 ------D-RNIIRS--------------------TIT-------------LLKY-----AKADKRIWLAILGISWFWLVG 241 (1140)
T ss_pred ------c-cchHHH--------------------HHH-------------HHHH-----HhcCchHHHHHHHHHHHHHHH
Confidence 0 000000 000 0000 000011111111111111111
Q ss_pred HhhhhchhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHH
Q 007816 315 TCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVS 394 (588)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~ 394 (588)
.....+...+..+..+.+. ...+.+.....++.+++.++..++.++..++ ..+..+.+++++.
T Consensus 242 ~~~~~~~p~~~~~~~g~~~------~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~-----------~~~~~~~~~~~~~ 304 (1140)
T PRK06814 242 AVVLSQLPLLAKETLGGDE------NVATLFLAVFSVGVAVGSFLASKLSEGRITL-----------LYVPIGALLMGLF 304 (1140)
T ss_pred HHHHHHhHHHHHHHcCCch------HHHHHHHHHHHHHHHHHHHHHHHHhCCceee-----------eeehHHHHHHHHH
Confidence 1111122222222222221 1233344555667777777776663222211 1133444444443
Q ss_pred HHHHHHHHHHHhhhccCCC-------CccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHH
Q 007816 395 MTVAGLVEVIRRNAFNETP-------PKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFG 467 (588)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~ 467 (588)
.+.+++... ........ ....+.+.+.+..++.+++.+..++...+++.+.+|++.||+++|+.++.+.++
T Consensus 305 ~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~ 382 (1140)
T PRK06814 305 GLDLAFASS--SVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAF 382 (1140)
T ss_pred HHHHHhccc--ccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHH
Confidence 332322100 00000000 001234556667778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 007816 468 YFLSSAFVDIIN 479 (588)
Q Consensus 468 ~~i~~~~~~~~~ 479 (588)
..+++.+.+.+.
T Consensus 383 ~~ig~~~~g~l~ 394 (1140)
T PRK06814 383 MVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHHHHH
Confidence 999988877764
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-19 Score=188.55 Aligned_cols=149 Identities=15% Similarity=0.045 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 87 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~ 87 (588)
+..+....+...+... +...+.+.+++++|.|+.+.+++.+.+.++..+++++.|++.|| +|||+++.++..++.+|.
T Consensus 28 ~~~~~~~~~~~~~~~~-~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~~~~~~ 105 (438)
T PRK10133 28 FALLCSLFFLWAVANN-LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGA 105 (438)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHH
Confidence 4555666666666654 44445566799999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHH
Q 007816 88 VMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATT 167 (588)
Q Consensus 88 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~ 167 (588)
+++..+.. ..+++.++++|+++|+|.|...+..++++.|..|+++ |...++..+....
T Consensus 106 ~l~~~~~~----------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~ 163 (438)
T PRK10133 106 ALFWPAAE----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNS 163 (438)
T ss_pred HHHHHHHh----------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHH
Confidence 88642211 1167789999999999999999999999999866544 5556888888889
Q ss_pred HHHHHHhhhhhee
Q 007816 168 VAAVIGVTGIVYV 180 (588)
Q Consensus 168 iG~~ig~~~~~~i 180 (588)
+|..+|+.+++.+
T Consensus 164 ~G~~~g~~~g~~l 176 (438)
T PRK10133 164 FGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-19 Score=187.92 Aligned_cols=156 Identities=18% Similarity=0.175 Sum_probs=119.0
Q ss_pred HHHHHchhccC--CChhhHHHHHHH--H---HHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCC
Q 007816 28 SMVLYFKNEMH--FDLAGASNTLTN--F---FGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLH 100 (588)
Q Consensus 28 ~~~~~~~~~l~--~~~~~~~~i~~~--~---~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~ 100 (588)
.+..++.++.. .++++.+.+.+. + .++..+++++.|+++|| +|||+++.++.++..++.++++++++.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYATIG 92 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhCCChhhhH
Confidence 45556655543 445666665543 2 23334688999999999 8999999999999999999999887532100
Q ss_pred CCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhhee
Q 007816 101 PPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYV 180 (588)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i 180 (588)
......++++|+++|+|.|...+..+++++|.+|+++ |++..++.+....+|..+++.++..+
T Consensus 93 -----------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 93 -----------IWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred -----------HHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012468999999999999999999999999999888 99999999999999999998876544
Q ss_pred c--------cccchhHHHHHHHHHHHHHH
Q 007816 181 F--------TEKSWWLGFLVSSVANFIGL 201 (588)
Q Consensus 181 ~--------~~~~w~~~f~i~~~~~~~~~ 201 (588)
. ..++||+.|.+..++.+++.
T Consensus 156 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 156 SYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 2 35789999988776655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-19 Score=185.36 Aligned_cols=390 Identities=12% Similarity=0.059 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccch-hHHHHHHHHHHHHHHH
Q 007816 10 VYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSR-FATCLIFGTLEVLALV 88 (588)
Q Consensus 10 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GR-r~~i~i~~~i~~ig~~ 88 (588)
-+.+..++...++-.+.+++.+|+++++|++..+.|++.+++.++..+++++.|+++|| +|| |+++.++.++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHH
Confidence 46677788878888888999999999999999999999999999999999999999999 765 7788888888878777
Q ss_pred HHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhh--------ccCCCCCchhhhhhhhHHH
Q 007816 89 MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGA--------GQFDENDPKGAKALASYFN 160 (588)
Q Consensus 89 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~ia--------e~~~~~~~~~~~~Rg~~~~ 160 (588)
+..+.+ +++.+++.|++.|++.+...+...+... |...... |.+.++
T Consensus 85 ~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------~~r~~G 139 (418)
T TIGR00889 85 FAAQVT-------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------PIRVMG 139 (418)
T ss_pred HHHHhc-------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------Ceeeeh
Confidence 777665 4567888999999987777766555432 3222222 555555
Q ss_pred HHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCC
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLP 240 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 240 (588)
.+|.++|+.+++.+.....|+ +|++.++..++..++.+ ..|+.+..+++++ .+
T Consensus 140 ------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~-----------------~~-- 192 (418)
T TIGR00889 140 ------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAKSTAK-----------------MS-- 192 (418)
T ss_pred ------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCccccc-----------------cC--
Confidence 367888888887774333344 45555555444443322 2232110000000 00
Q ss_pred CCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007816 241 DNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQL 320 (588)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 320 (588)
..+.. +..+.+ + +++ ++....+...+..........++
T Consensus 193 -----~~~~~---------------~~~~~~---~-------------~k~------~~~~~~~~~~~~~~~~~~~~~~~ 230 (418)
T TIGR00889 193 -----IKVML---------------GLDAFI---L-------------FKN------KRMAIFFFFSMLLGAPLQITNIF 230 (418)
T ss_pred -----HHHHh---------------hhhHHH---H-------------hcC------CCeeeHHHHHHHHHhHHHHHHHh
Confidence 00000 000000 0 000 00001111111111101111111
Q ss_pred hhHHHHHhhhcCCCCC-cc-cccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 007816 321 QTFSITQGAAMDPHLG-SI-KVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVA 398 (588)
Q Consensus 321 ~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~ 398 (588)
...+..+ .+.+.... +. ....+.......+..++..++..++.+++++|+. +.++.+++++++.+.
T Consensus 231 ~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~-----------l~~~~~~~~v~~~l~ 298 (418)
T TIGR00889 231 GNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV-----------MLLSLVAWALRFGFF 298 (418)
T ss_pred HHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-----------HHHHHHHHHHHHHHH
Confidence 1222211 11111100 00 0112333344445555566666777666666553 556666666665544
Q ss_pred HHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHH-HHHHHHHHHHHHHHHH
Q 007816 399 GLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTY-LSLSFGYFLSSAFVDI 477 (588)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~-~~~~l~~~i~~~~~~~ 477 (588)
..... .....+.+.+..++.++++....+....++.|.+|++.|++++|+.+ ..+.+++.+++.+.+.
T Consensus 299 ~~~~~-----------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~ 367 (418)
T TIGR00889 299 AYGDP-----------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGV 367 (418)
T ss_pred HHcCc-----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 43200 01122334555677888888888888999999999999999999997 5678999999999988
Q ss_pred hhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007816 478 INAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKY 530 (588)
Q Consensus 478 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~ 530 (588)
+.+..+. .+..+++..|.+.++++++.++.++++.||.++
T Consensus 368 l~~~~g~-------------~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 368 MVEKMFA-------------YGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHhcc-------------ccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 7653221 000135567888888888888888888886543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=195.11 Aligned_cols=403 Identities=11% Similarity=0.047 Sum_probs=224.2
Q ss_pred CChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHH
Q 007816 39 FDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYF 118 (588)
Q Consensus 39 ~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 118 (588)
+++...+.+..+..+|..+|+++.||++|+ +|||+++...+++.++++++++++.+.+. | ..-.+++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~~~~~---~---------~~~m~~L 147 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSVGTTS---P---------LGVMMTL 147 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCCCCCC---C---------cchhhHH
Confidence 667888999999999999999999999999 99999999999999999997777654331 1 1357889
Q ss_pred HHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhh----hhheecc-----------c
Q 007816 119 YGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVT----GIVYVFT-----------E 183 (588)
Q Consensus 119 ~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~----~~~~i~~-----------~ 183 (588)
.+-|+++|+|+|+-+|...+..+|.+-.+. ||...+....+...|.+.|.. +.+.... +
T Consensus 148 ~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld 221 (538)
T KOG0252|consen 148 CFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLD 221 (538)
T ss_pred HHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHH
Confidence 999999999999999999999999998766 777766654444444444433 3222211 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhh--hhhhhhhhcccc-cc
Q 007816 184 KSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEEL--YEINEKERASTW-ER 260 (588)
Q Consensus 184 ~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l--~~~~~~~~~~~~-~~ 260 (588)
.-||..|.+.+++. ++.++. |.. .||+++.- .+.+.+..+.+. +.
T Consensus 222 ~vWRl~~glg~vpa----~~~ly~--Rl~--------------------------M~Et~~Y~al~~~~~~~a~~d~~k~ 269 (538)
T KOG0252|consen 222 GVWRIIFGLGAVPA----LLVLYF--RLK--------------------------MPETARYTALVSKKLKQAAGDMKKV 269 (538)
T ss_pred HHHHHHHHHHHHHH----HHHHHh--hhc--------------------------CCcchhHHHHhhcCHhhhhhccccc
Confidence 23777777766543 222221 111 11111110 000000000000 00
Q ss_pred cCCCcchhhhhhhccCCCCCCCCCCc-ccccccchH-HHHHHHHHHHHHHHHHHHHHhhh------hchhHHHHHhhhcC
Q 007816 261 IPHANQFRCLDKAAIMPKDSAVAAPW-RVCTVTQVE-EVKILTRMMPILASTILMNTCLA------QLQTFSITQGAAMD 332 (588)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~ 332 (588)
.+. .++..+...+....++.| .++.+.+.+ +-++++ .....|..+. ..+...+.+..+..
T Consensus 270 ~~~-----~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Ll-------gt~~~WFllDiafy~~nL~~s~I~~~ig~~ 337 (538)
T KOG0252|consen 270 LSV-----DIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLL-------GTAGTWFLLDIAFYGQNLFQSVIFSAIGVI 337 (538)
T ss_pred ccc-----ccchhhccccCCCCcccccchHHHHHHHHHHHHHH-------HHHHHHHhhhhhhhccccHHHHHHHhhccC
Confidence 000 000000000000111112 112111111 111111 1112222211 11222222222222
Q ss_pred CCCCcc-cc-cCCccc-chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007816 333 PHLGSI-KV-PTSSIP-VIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAF 409 (588)
Q Consensus 333 ~~~~~~-~~-~~~~~~-~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~ 409 (588)
+..... .+ ..+..+ ++.....+.+.++.-.+++.+|||+. -+.|++++++.+++++... +..
T Consensus 338 ~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~i-----------q~~GF~~~~i~~~~~~~~y----~~~ 402 (538)
T KOG0252|consen 338 PSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYI-----------QLMGFFIMTIFFFVIAGPY----NQL 402 (538)
T ss_pred CCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHH-----------HHhhHHHHHHHHHHHcCCc----ccc
Confidence 110000 00 001111 11111112222333344555577764 4578888888888777652 210
Q ss_pred cCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 007816 410 NETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSK 489 (588)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 489 (588)
++ .. ..++..-+.+.+++..-+.....+.+|.+|.+.|+++-|+...+.-+|..++...+....+.-
T Consensus 403 -~~---~~--Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~------- 469 (538)
T KOG0252|consen 403 -EN---TI--GFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN------- 469 (538)
T ss_pred -cc---cC--ceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc-------
Confidence 00 01 112222334445555666666778889999999999999999999999999988777654311
Q ss_pred CCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCC
Q 007816 490 QGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENCSDIKP 540 (588)
Q Consensus 490 ~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~le~~~~~~ 540 (588)
+ ....+..+.+++++++++++.++.+ +.||||+|++||++.+.
T Consensus 470 --y-----p~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 470 --Y-----PPNIGVRNVFIILAGCMLLGILFTL-LIPETKGKSLEEISNEE 512 (538)
T ss_pred --C-----CccccchHHHHHHHHHHHHhHheeE-EeecccccCHHHhcChh
Confidence 0 1123456689999999999988655 56799999999986544
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=192.05 Aligned_cols=356 Identities=13% Similarity=0.066 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcc---cchhH-HHHHHHHHHHHHHHH
Q 007816 14 FSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTF---LSRFA-TCLIFGTLEVLALVM 89 (588)
Q Consensus 14 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~---~GRr~-~i~i~~~i~~ig~~l 89 (588)
.++..++....+.+.+.+|+++++|+++.++|++.++..+..++..|+.|+++||. +|||| .++++..+..++.++
T Consensus 7 g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~ 86 (437)
T TIGR00792 7 GDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVL 86 (437)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHH
Confidence 45666777777888999999999999999999999999999999999999999972 58744 677788888888887
Q ss_pred HHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCC-CCchhhhhhhhHHHHHHHHHHH
Q 007816 90 LTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDE-NDPKGAKALASYFNFYLLATTV 168 (588)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~-~~~~~~~~Rg~~~~~~~~~~~i 168 (588)
+...++.+. ....+.+++.+++.+++.+...+...++..|+.++ ++ |+++.++.....++
T Consensus 87 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~~~~~ 147 (437)
T TIGR00792 87 LFTTPDFSA-------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRFGATL 147 (437)
T ss_pred HHhCCCCCc-------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHHHHHH
Confidence 776653221 12456778889999999999888888999999853 34 88999998888888
Q ss_pred HHHHHhhhhheec-------cccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCC
Q 007816 169 AAVIGVTGIVYVF-------TEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPD 241 (588)
Q Consensus 169 G~~ig~~~~~~i~-------~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 241 (588)
|..++..+.+.+. +..+||+.+.+.+++.++..++.+...++.+...+.+ .++
T Consensus 148 g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~--------------------~~~ 207 (437)
T TIGR00792 148 GGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKN--------------------IEK 207 (437)
T ss_pred HHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc--------------------ccc
Confidence 8777655543332 2468999998888776656554443333211000000 000
Q ss_pred CchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 007816 242 NPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQ 321 (588)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 321 (588)
.....+ .++ ...+ .|.....+...++............
T Consensus 208 ------------------------~~~~~~-------------~~~----~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (437)
T TIGR00792 208 ------------------------KLSLKQ-------------IFK----ALFK-NDQLLILCLAYLFYNLAFNIKNGVQ 245 (437)
T ss_pred ------------------------CCCHHH-------------HHH----HHhC-CHHHHHHHHHHHHHHHHHHHHcchh
Confidence 000000 000 0000 1111111111111111111111111
Q ss_pred hHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 007816 322 TFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLV 401 (588)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~ 401 (588)
..+.....+ . ....+.......+..+++.++..++.+++++|+ .+.+|.++++++++...+.
T Consensus 246 ~~~~~~~~~--~-----~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~-----------~~~~~~~~~~~~~~~~~~~ 307 (437)
T TIGR00792 246 VYYFTYVLG--D-----PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI-----------LFAGGILLMVLGYLIFFFA 307 (437)
T ss_pred heeEeeecC--C-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHc
Confidence 111111001 0 001112223345666666677777755555443 2556666666665554332
Q ss_pred HHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccC-------cchhhHHHHHHHHHHHHHHHHHHHH
Q 007816 402 EVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAP-------AGMKTLASSFTYLSLSFGYFLSSAF 474 (588)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P-------~~~rg~~~~~~~~~~~l~~~i~~~~ 474 (588)
+.+.+.+.+..++.+++.....+..+++..|..| .+.+|.+.|+.++...+++.+++.+
T Consensus 308 --------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i 373 (437)
T TIGR00792 308 --------------GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFL 373 (437)
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 1122334455566778888888888888888765 5668999999999999999999999
Q ss_pred HHHhhhhh
Q 007816 475 VDIINAVT 482 (588)
Q Consensus 475 ~~~~~~~~ 482 (588)
.+.+.+..
T Consensus 374 ~g~ll~~~ 381 (437)
T TIGR00792 374 VGLILGII 381 (437)
T ss_pred HHHHHHHc
Confidence 98876543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-18 Score=181.35 Aligned_cols=172 Identities=13% Similarity=0.055 Sum_probs=132.5
Q ss_pred CcchHHHHHHHHHHHHHHHH-HhH--HHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFI-ANG--ISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFG 80 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~v~--~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~ 80 (588)
+++.++..+....+.-.+.| .+. +....++..++|-+ ....|+.+.+.++..+..++.|.++|. ||||+.++.+.
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~ 115 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGS 115 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHH
Confidence 55666666554444433333 222 56668899999965 688999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 81 TLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 81 ~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
++.++|+++++.+++ ...+++|-.+.|+|.|.... ....++|..|.+. |+....
T Consensus 116 ~l~vvG~Iv~atA~~-------------------~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~------R~~~~~ 169 (599)
T PF06609_consen 116 LLGVVGSIVCATAQN-------------------MNTFIAGMVLYGVGAGVQEL-AALAISELVPNKW------RGLGLA 169 (599)
T ss_pred HHHHhHHHHhhcCCc-------------------HHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccch------hhhHhH
Confidence 999999999999984 44799999999999888775 4566899999766 666666
Q ss_pred HHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHH
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIA 203 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 203 (588)
+......+....++.++..+..+.+|||.|++..+...+++++
T Consensus 170 ~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 170 IASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred HHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence 6555555555566666665666679999999998875555443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-18 Score=181.44 Aligned_cols=176 Identities=9% Similarity=0.073 Sum_probs=139.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhccc-----chhHH-HH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFL-----SRFAT-CL 77 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~-----GRr~~-i~ 77 (588)
+.|..+.++...+...+..+...+.++.+++ +.|.|..+++.. +..... .++.++.|+++|| + ||||. ++
T Consensus 10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ll 85 (491)
T PRK11010 10 QQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDR-YTPPFLGRRRGWLL 85 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHc-ccccCCCCchHHHH
Confidence 4566777888888887787766666666655 458899899986 333333 3688999999999 8 99986 55
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhh
Q 007816 78 IFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALAS 157 (588)
Q Consensus 78 i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~ 157 (588)
++.+...++..++++.+. ..+.+.+.+.|++.+++.+...+...++.+|.+|+++ |++
T Consensus 86 ~~~i~~~~~~~~~a~~~~----------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~ 143 (491)
T PRK11010 86 ATQLLLLVAIAAMGFLEP----------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGA 143 (491)
T ss_pred HHHHHHHHHHHHHHHcCC----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHH
Confidence 666666677777777641 2367789999999999999999999999999999877 999
Q ss_pred HHHHHHHHHHHHHHHHhhhhheecc-ccchhHHHHHHHHHHHHHHHHHH
Q 007816 158 YFNFYLLATTVAAVIGVTGIVYVFT-EKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 158 ~~~~~~~~~~iG~~ig~~~~~~i~~-~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
..++.....++|.++++.+++++.+ ..|||..|++.++..++..+..+
T Consensus 144 ~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 144 GAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888887 57999999998877655544433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-19 Score=171.85 Aligned_cols=426 Identities=12% Similarity=-0.003 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHH
Q 007816 11 YVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVML 90 (588)
Q Consensus 11 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~ 90 (588)
...+.-++........+.+.+-+....|.+..|..++......+..+++..+|.++|+ +||||...+......+-..+.
T Consensus 82 ~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is 160 (528)
T KOG0253|consen 82 VAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVIS 160 (528)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhh
Confidence 3444455556666777777788888899999999999999999999999999999999 899999999888888877777
Q ss_pred HHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 007816 91 TIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAA 170 (588)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~ 170 (588)
+.++ |+..+.+.|.+.|+|.|+ .|...++-.|.-|..+ |...+-.. ....+|.
T Consensus 161 ~~sp-------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~ 213 (528)
T KOG0253|consen 161 GASP-------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQ 213 (528)
T ss_pred cCCC-------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHH
Confidence 7776 556799999999999999 9999999999999877 76666665 6778888
Q ss_pred HHHhhhhheeccccchhHHHHHHHHHHHHHHH--HHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 007816 171 VIGVTGIVYVFTEKSWWLGFLVSSVANFIGLI--ALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYE 248 (588)
Q Consensus 171 ~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 248 (588)
++.-.+.-.+..++||||.++....+..+... .+.+++||+..-+.++.++.+.. ....+.++.++|.-......
T Consensus 214 v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL---~kiArmNg~qlplgvl~~s~ 290 (528)
T KOG0253|consen 214 VFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETL---HKIARMNGKQLPLGVLESSA 290 (528)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHH---HHHHHhcCCCCCcceeeeeh
Confidence 88877766667788999887776655443333 35566777665555444433332 23345555566643333332
Q ss_pred hhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHh
Q 007816 249 INEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQG 328 (588)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 328 (588)
+++.++... -.|+.+....++.. .....+..+ .-+|+.+....+++...+.+.. .-..+.-..|.
T Consensus 291 ~~~~e~e~~-----------~~~~~~~~a~ke~r-g~~~nLlsp--~lrkttlllw~iwfgnafsyyg-~VLlttelfqs 355 (528)
T KOG0253|consen 291 IDRQEQEES-----------DLDDSKSSAAKEVR-GGTTNLLSP--KLRKTTLLLWRIWFGNAFSYYG-SVLLTTELFQS 355 (528)
T ss_pred hhhhhhhhh-----------chhhhhhccccccc-cchHhhcCh--HHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHhc
Confidence 222221110 11111111111100 000001111 1123332222221111111100 00111111111
Q ss_pred hh-cC---CCCCc--------cccc-CCccc-chhHH----HHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHH
Q 007816 329 AA-MD---PHLGS--------IKVP-TSSIP-VIPLL----FMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVL 390 (588)
Q Consensus 329 ~~-~~---~~~~~--------~~~~-~~~~~-~~~~l----~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l 390 (588)
.. .. ..... .... ..... .+..+ +.++.+.++|++ |||++ |....++
T Consensus 356 gd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverl----GRKkT-----------Mal~l~~ 420 (528)
T KOG0253|consen 356 GDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERL----GRKKT-----------MALSLIL 420 (528)
T ss_pred cCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHh----cchhH-----------HHHHHHH
Confidence 00 00 00000 0000 00000 01111 233444555554 99875 4444555
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHH
Q 007816 391 SAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFL 470 (588)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i 470 (588)
+++..++..... ......++ .+..-.+....+.+.|.|..|.+|+..|+++.|....++.+|+++
T Consensus 421 f~iflfll~~c~--------------~rn~~tvl-lf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~ 485 (528)
T KOG0253|consen 421 FGIFLFLLTTCK--------------TRNAYTVL-LFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIF 485 (528)
T ss_pred HHHHHHHHHHhc--------------CcchhHHH-HHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhh
Confidence 555444443331 11111111 122233444556778999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 007816 471 SSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPE 533 (588)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~l 533 (588)
.+.+. .....+ ....-.+++++++++.+.+.++=-|||||++
T Consensus 486 ~p~iA-~~~e~s--------------------~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 486 SPVIA-MRAELS--------------------TSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhHHH-HHhccc--------------------eeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 98887 332211 1112567788888888888887779999874
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-18 Score=179.09 Aligned_cols=172 Identities=15% Similarity=0.099 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHH
Q 007816 7 NFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 86 (588)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig 86 (588)
.++.++...+...+.. ++...+.+.+++++|.|+.+.|++.+.+.++..+++++.|++.|| +|||+++.++.+++.+|
T Consensus 4 ~~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHH
Confidence 4667777777776665 566677788899999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHH
Q 007816 87 LVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLAT 166 (588)
Q Consensus 87 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~ 166 (588)
.++...+.. ..+++.++++|++.|+|.|...+..++++.+..|+++ |++.+++.+...
T Consensus 82 ~~l~~~~~~----------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 139 (410)
T TIGR00885 82 AFLFWPAAE----------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFN 139 (410)
T ss_pred HHHHHHHHh----------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHH
Confidence 988765532 1267889999999999999999999999999998776 888899999999
Q ss_pred HHHHHHHhhhhheecc--------------------------ccchhHHHHHHHHHHHHHHH
Q 007816 167 TVAAVIGVTGIVYVFT--------------------------EKSWWLGFLVSSVANFIGLI 202 (588)
Q Consensus 167 ~iG~~ig~~~~~~i~~--------------------------~~~w~~~f~i~~~~~~~~~~ 202 (588)
++|..+||.+++.+.. ..+||++|++.+++.++..+
T Consensus 140 ~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~ 201 (410)
T TIGR00885 140 PFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL 201 (410)
T ss_pred HHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988775531 23699999887776554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-18 Score=176.96 Aligned_cols=337 Identities=7% Similarity=-0.022 Sum_probs=199.5
Q ss_pred HHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchh----HHHHHHHHHHHHHHHHH
Q 007816 15 SALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRF----ATCLIFGTLEVLALVML 90 (588)
Q Consensus 15 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr----~~i~i~~~i~~ig~~l~ 90 (588)
.++-.++...+.+.++.|+ +++|.|..++|++.+++.++..++++++|++.|| +||| +.+.++..+.. ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~--~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLFA--VAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHHH--HHHH
Confidence 4444455566666777777 4589999999999999999999999999999999 8994 33322222211 1111
Q ss_pred HHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 007816 91 TIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAA 170 (588)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~ 170 (588)
..++ +.+.+++.|++.|++.+...|...++..+.. ++ |++.++......++|.
T Consensus 89 ~~~~-------------------~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~------~~~a~~~~~~~~~lg~ 141 (382)
T PRK11128 89 FGAH-------------------SFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ------IGLDYGKVRLWGSIAF 141 (382)
T ss_pred Hhcc-------------------cHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh------ccCCcchHHHHHHHHH
Confidence 1122 6778889999999999999999888888762 23 6777888888889999
Q ss_pred HHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhh
Q 007816 171 VIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEIN 250 (588)
Q Consensus 171 ~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 250 (588)
++||.+++++.+++|||..|++.++..++..+..+ ..|+ .++++++ .+.++
T Consensus 142 ~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~---~~~~~~~----------------~~~~~--------- 192 (382)
T PRK11128 142 VIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPT---IMPQGES----------------RQQES--------- 192 (382)
T ss_pred HHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCC---CCCcccc----------------ccccc---------
Confidence 99999999999999999999887765444433222 2221 0110000 00000
Q ss_pred hhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHhhh
Q 007816 251 EKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQGAA 330 (588)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 330 (588)
+ ....++. ....|+.+..+...+...........+...+..+ .+
T Consensus 193 --------------~----------------~~~~~~~-----i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g 236 (382)
T PRK11128 193 --------------A----------------GWPAWKA-----LLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AG 236 (382)
T ss_pred --------------c----------------ccchHHH-----HHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CC
Confidence 0 0000100 0001112221111111111111111111222211 12
Q ss_pred cCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007816 331 MDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFN 410 (588)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~ 410 (588)
.+. ...+.....+.+..++..++.+++.++.++|+ .+..+.++++++++..+..
T Consensus 237 ~s~------~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~-----------~l~~~~~~~~~~~~~~~~~--------- 290 (382)
T PRK11128 237 YSA------STIGYLWSLGVVAEVLIFAFSNRLFRRWSARD-----------LLLLSAICGVVRWGLMGST--------- 290 (382)
T ss_pred CCH------hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----------HHHHHHHHHHHHHHHHHhh---------
Confidence 211 11122333444555555566666644444333 3556777777766555432
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 007816 411 ETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTY-LSLSFGYFLSSAFVDIINA 480 (588)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~-~~~~l~~~i~~~~~~~~~~ 480 (588)
.+.+.+++..++.+++.+...+....+..+.. ++.+++++++.+ ..+.++..+++.+.+.+.+
T Consensus 291 ------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 291 ------TALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445556667778888888888888888874 555688888876 4556777888888887754
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-18 Score=178.49 Aligned_cols=179 Identities=13% Similarity=-0.013 Sum_probs=134.7
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchh-ccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKN-EMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 84 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ 84 (588)
|+++...+..+..-+..+ +.+.+.+.+.+ ++|+|..|.+++.+++.++..++.+..|++.|| +|.|+++.++.++..
T Consensus 34 r~l~~s~~~f~~~F~~w~-~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWM-LFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHH
Confidence 566665555444444444 44445566654 899999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 85 LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 85 ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
+++++.+++.... ..+++.+++.|++.|++ |...+.....+++.+|+++ ||++++++..
T Consensus 112 i~~~~~~~a~~~~--------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g 170 (462)
T PRK15034 112 IPCVWLGIAVQNP--------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGG 170 (462)
T ss_pred HHHHHHHHHHccc--------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHH
Confidence 9999998862100 12678999999999998 6688889999999999877 9999999976
Q ss_pred HHHHHHHHHhhhhheec------------------cccchhHHHHHHHHHHHHHHHHHHhh
Q 007816 165 ATTVAAVIGVTGIVYVF------------------TEKSWWLGFLVSSVANFIGLIALAAG 207 (588)
Q Consensus 165 ~~~iG~~ig~~~~~~i~------------------~~~~w~~~f~i~~~~~~~~~~~~~~~ 207 (588)
..|+|..+++.+...+. +..+||...++-.++.++..++.++.
T Consensus 171 ~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 171 LGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777765555432211 13447777777766665555554443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=180.76 Aligned_cols=155 Identities=10% Similarity=0.067 Sum_probs=131.9
Q ss_pred HHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhcc
Q 007816 17 LENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYS 96 (588)
Q Consensus 17 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~ 96 (588)
++...++...+.+.+.+.+++|+|..+.+++.+.+.++..++.++.|+++|| +||||++.++.++..++.+++ .++
T Consensus 10 ~~~~~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~~-- 85 (355)
T TIGR00896 10 LNLRPALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SAP-- 85 (355)
T ss_pred hcccCccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hhc--
Confidence 4555566666778888999999999999999999999999999999999999 999999999999988888776 443
Q ss_pred ccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 007816 97 KNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTG 176 (588)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~ 176 (588)
+.+.++++|++.|+|.|...+..+.++.|.+| ++ |++++++++...++|..+++.+
T Consensus 86 -----------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~ 141 (355)
T TIGR00896 86 -----------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAA 141 (355)
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999886 45 8999999999999999999998
Q ss_pred hheecccc--chhHHHHHHHHHHHH
Q 007816 177 IVYVFTEK--SWWLGFLVSSVANFI 199 (588)
Q Consensus 177 ~~~i~~~~--~w~~~f~i~~~~~~~ 199 (588)
++.+.+.. +||+.|.+.....++
T Consensus 142 ~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 142 TVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 88776554 399888776654433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-18 Score=169.63 Aligned_cols=388 Identities=12% Similarity=-0.013 Sum_probs=242.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 83 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~ 83 (588)
++|++|.-.+... -.++.-.+.+.+.+++++++|+|+.|.++++++-.+...+..++-|.+.|| ||-|+...++.++.
T Consensus 12 ~~~~L~~S~~af~-v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~l~ 89 (417)
T COG2223 12 ARRNLWLSTLAFD-VGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSMLLL 89 (417)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHHHH
Confidence 3444443333322 234444456677789999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007816 84 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 163 (588)
Q Consensus 84 ~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~ 163 (588)
++-.+..+++.+.+ +++.+++.+++.|++.|-... ..+++++.+||++ +|.+++++.
T Consensus 90 ~IP~~~~~~a~~~~----------------~~~~ll~~gll~G~~GasFav-~m~~~s~~fP~~~------qG~AlGI~g 146 (417)
T COG2223 90 LIPCLGLAFAVTYP----------------STWQLLVIGLLLGLAGASFAV-GMPNASFFFPKEK------QGLALGIAG 146 (417)
T ss_pred HHHHHHHHHHccCC----------------chHHHHHHHHHHhcccceehc-ccccccccCChhh------hhHHHHHhc
Confidence 99999999998655 457899999999999766554 5556999999988 999999999
Q ss_pred HHHHHHHHHHhhhhheeccccc---hhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCC
Q 007816 164 LATTVAAVIGVTGIVYVFTEKS---WWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLP 240 (588)
Q Consensus 164 ~~~~iG~~ig~~~~~~i~~~~~---w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 240 (588)
..|+|..+....+..+....+ |+..-.+..+.+++..+.+++.....++.++..++ ..|
T Consensus 147 -~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~-----------------~~~ 208 (417)
T COG2223 147 -AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKP-----------------QLP 208 (417)
T ss_pred -cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccc-----------------cch
Confidence 999999999888888887778 99988888888887777766655432211110000 000
Q ss_pred CCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007816 241 DNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQL 320 (588)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 320 (588)
. +++ .+...++.++...+-..+...++.+..+
T Consensus 209 ---~------------------------~~~---------------------~v~~~~~~W~lsllY~~tFG~Fvgfs~~ 240 (417)
T COG2223 209 ---A------------------------QLK---------------------AVFSNKDTWLLSLLYFATFGGFVGFSAY 240 (417)
T ss_pred ---h------------------------HHH---------------------HHhcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 0000112222222222233323333333
Q ss_pred hhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 007816 321 QTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGL 400 (588)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~ 400 (588)
.+.+.....+.++ ...+......++...+.-|+..++.||++.++ .+.+....++++..+.++
T Consensus 241 l~~~~~~~fg~~~------~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~r-----------v~~~~f~~~~~~~~~l~~ 303 (417)
T COG2223 241 LPMYLVTQFGLSP------VTAGLIAFLFPLIGALARPLGGWLSDRIGGRR-----------VTLAVFVGMALAAALLSL 303 (417)
T ss_pred HHHHHHHhcCCCh------hhHHHHHHHHHHHHHHHHhccchhhhhccchh-----------HHHHHHHHHHHHHHHHHc
Confidence 3333322223322 22222223333333344444444444444333 244556666666665554
Q ss_pred HHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007816 401 VEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINA 480 (588)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~ 480 (588)
.... .. ...+.+.....++..++..+.-+...+..+..++|+ +-|...|+......+|++.-+...+...+
T Consensus 304 ~~~~-----~~---~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~ 374 (417)
T COG2223 304 FLTG-----FG---HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLD 374 (417)
T ss_pred cccc-----cc---cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHH
Confidence 3210 00 012222233333344444444455555566666666 45777888878788888777777666654
Q ss_pred hhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Q 007816 481 VTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAA 526 (588)
Q Consensus 481 ~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~ 526 (588)
.++ .++..|+++..+.+++.+..+..+.
T Consensus 375 ~tg------------------~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 375 LTG------------------SYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred hcc------------------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2455788889888888888776654
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-18 Score=176.64 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=126.4
Q ss_pred HHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhccc-----chhHHH-HHHHHHHHHHHHHHHHhhcc
Q 007816 23 IANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFL-----SRFATC-LIFGTLEVLALVMLTIQAYS 96 (588)
Q Consensus 23 ~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~-----GRr~~i-~i~~~i~~ig~~l~~~a~~~ 96 (588)
+++.+...+.+.+++|+|..+.++.... .+...+ .++.|++.|| + ||||.+ +.+.++..+..++.++.+.
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr-~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~- 79 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDT-VYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP- 79 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhc-ccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-
Confidence 4566777778888999999999999755 333344 8899999999 6 999975 5666677777666666542
Q ss_pred ccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 007816 97 KNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTG 176 (588)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~ 176 (588)
..+.+.+....++.+++.+...++..+++.|.+|+++ |+++.++...+.++|.++++.+
T Consensus 80 ---------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l 138 (356)
T TIGR00901 80 ---------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSL 138 (356)
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHH
Confidence 1255667777888899999999999999999999877 9999999999999999999999
Q ss_pred hheeccccc--------hhHHHHHHHHHHHHHHHHHH
Q 007816 177 IVYVFTEKS--------WWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 177 ~~~i~~~~~--------w~~~f~i~~~~~~~~~~~~~ 205 (588)
++.+....+ ||..|++.++..++..++.+
T Consensus 139 ~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 139 ALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 988877777 99999998887666554443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-17 Score=172.06 Aligned_cols=439 Identities=12% Similarity=0.030 Sum_probs=268.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhc---ccchhHHHHHH-HHH
Q 007816 7 NFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDT---FLSRFATCLIF-GTL 82 (588)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~---~~GRr~~i~i~-~~i 82 (588)
.+..++...+.-.+++--..+++.+|+ +++|.+..+.+++..+..+...+.+++.|+++|| ++||||.++++ ...
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence 455666666777777776777777765 6799999999999999999999999999999993 28999999886 555
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
.+++.++.+.+.+..++.-..- +.-++....+.++++-.+..++.....+...++++|++|+++. .++.+.++.
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~~~--~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~~~~ 157 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGDNL--DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIANAYF 157 (477)
T ss_pred HHHHHHHHHhCchhhhhccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHHHHHH
Confidence 5566667777654321110000 0000011224556666677778899999999999999998761 036899999
Q ss_pred HHHHHHHHHHHhhhhhee--ccc-------------cchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHH
Q 007816 163 LLATTVAAVIGVTGIVYV--FTE-------------KSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQV 227 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i--~~~-------------~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (588)
..+.++|..+|+.++++. .+. .+.+..|.+.++..+++.++-.+..+|.+...+++..
T Consensus 158 ~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~------- 230 (477)
T TIGR01301 158 SFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI------- 230 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch-------
Confidence 999999999999988764 111 1568899998888777777666555543221110000
Q ss_pred HHHHHHhcCCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHH
Q 007816 228 LVVAIKNRKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPIL 307 (588)
Q Consensus 228 ~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (588)
+ .+..+ .++.+. ....+++.+...+--|.+.+....+
T Consensus 231 ------~--~~~~~-------------------~~~~~~----------------~~~~~~i~~~~~~mP~~m~~l~~vq 267 (477)
T TIGR01301 231 ------N--SEAAP-------------------PSKHGE----------------EAFFGELFGAFKYLPRPVWILLLVT 267 (477)
T ss_pred ------h--hhccc-------------------ccccch----------------hhhHHHHHHHHHHCCHHHHHHHHHH
Confidence 0 00000 000000 0000000000111123455566677
Q ss_pred HHHHHHHHhhhhchhHHHHHh-hhcCCCCC---ccccc-CCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchH
Q 007816 308 ASTILMNTCLAQLQTFSITQG-AAMDPHLG---SIKVP-TSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQ 382 (588)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~ 382 (588)
++.++.|..+..|.|.++-+. .+-+++.. ..+.- .......+.+...+.+.+..++.++.++|+ .
T Consensus 268 ffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k----------~ 337 (477)
T TIGR01301 268 CLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK----------R 337 (477)
T ss_pred HHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------h
Confidence 778888888878887776542 11111100 00000 111223344444455556666644444321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--h-ccCCC--Cccch-HHHHHHHHHHHHHHHHHHhhhhhhhhhcccCc--chhh
Q 007816 383 RVGIGLVLSAVSMTVAGLVEVIRRN--A-FNETP--PKQIS-LFWLSFQYCIFGIADMFTFIGLLEFFYKEAPA--GMKT 454 (588)
Q Consensus 383 ~~~~G~~l~~~~~~~~~~~~~~~~~--~-~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~--~~rg 454 (588)
...++.++.+++++...+......+ . ...+. .++.. .+...+.+...|+.....+...++++.+..|. +-.|
T Consensus 338 ~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G 417 (477)
T TIGR01301 338 LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQG 417 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCc
Confidence 2356777777787777655321100 0 00000 01112 35566778888999999999999999999995 4459
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007816 455 LASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYK 529 (588)
Q Consensus 455 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~ 529 (588)
.++|+.|++..+...+.+...+.+.+..+ ++..+.+.+-++..+++.+..++..|+++
T Consensus 418 ~~mgilN~~I~lpQii~sl~~g~~~~~~g-----------------~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 418 LSMGVLNLAIVIPQIIVSLGSGPWDQLFG-----------------GGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHcC-----------------CCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999998877666543221 12233577777888888888888888754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-16 Score=164.93 Aligned_cols=165 Identities=8% Similarity=0.051 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhccc-----chhH-HHHHHHHHHHHH
Q 007816 13 VFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFL-----SRFA-TCLIFGTLEVLA 86 (588)
Q Consensus 13 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~-----GRr~-~i~i~~~i~~ig 86 (588)
..++...+.+.-..+.++.|+++ .|+|.+++|++..+... ++..++.|+++|| + |||| .+.++.++..++
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHH
Confidence 34444555555555666677765 59999999999766554 7999999999999 8 8876 677778888877
Q ss_pred HHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHH
Q 007816 87 LVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLAT 166 (588)
Q Consensus 87 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~ 166 (588)
..++++... ..+.+.+++..++.++..+...+...+++.|.+|+++ |+++.++.....
T Consensus 82 ~~~l~~~~~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~ 139 (402)
T PRK11902 82 IAAMAFCPP----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGY 139 (402)
T ss_pred HHHHHhcCc----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHH
Confidence 777776632 1256677777788889999999999999999999887 999999999999
Q ss_pred HHHHHHHhhhhheeccc-cchhHHHHHHHHHHHHHHHH
Q 007816 167 TVAAVIGVTGIVYVFTE-KSWWLGFLVSSVANFIGLIA 203 (588)
Q Consensus 167 ~iG~~ig~~~~~~i~~~-~~w~~~f~i~~~~~~~~~~~ 203 (588)
++|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus 140 ~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 140 RLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 99999998888888764 59999999988765554443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-17 Score=165.72 Aligned_cols=153 Identities=8% Similarity=-0.012 Sum_probs=134.8
Q ss_pred HHhHHHHHHHchhccCCChhh-HHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 007816 23 IANGISMVLYFKNEMHFDLAG-ASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHP 101 (588)
Q Consensus 23 ~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~ 101 (588)
-...+.+.+|+.+++|+|++| .|.+.+++..++.++.+++|+++|| +|-|+++.++.+.+.+.+++.++++
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~------- 113 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGT------- 113 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHH-------
Confidence 345667888999999999999 9999999999999999999999999 9999999999999999999999987
Q ss_pred CCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheec
Q 007816 102 PDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVF 181 (588)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~ 181 (588)
+...+.+.|++.|++.|... +...+++..+|+++ |+++.++...+.++|.++++.+++.+
T Consensus 114 ------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll- 173 (511)
T TIGR00806 114 ------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLL- 173 (511)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45679999999999999999 99999999999777 99999999999999999999999884
Q ss_pred cccchhHHHHHH---HHHHHHHHHH
Q 007816 182 TEKSWWLGFLVS---SVANFIGLIA 203 (588)
Q Consensus 182 ~~~~w~~~f~i~---~~~~~~~~~~ 203 (588)
..++||+-+.++ .....+++++
T Consensus 174 ~s~gWr~y~~Ln~Isl~s~~~a~~~ 198 (511)
T TIGR00806 174 VTLGWISYSTLNIISLVFMTFSVFL 198 (511)
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHH
Confidence 467998765544 3334444443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-17 Score=181.03 Aligned_cols=195 Identities=13% Similarity=0.144 Sum_probs=154.1
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
|-++..+....+....+.+..+.....++++++++..+.|++.+.+.++..++.++.|+++|| +|||+.+.++.+++.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~l 110 (633)
T TIGR00805 32 KVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMGL 110 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHHH
Confidence 334344443445555667888888899999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhcccc----------------CCCCCCCC------------CCcCCch----hHHHHHHHHHHHHHhccccc
Q 007816 86 ALVMLTIQAYSKN----------------LHPPDCGK------------SSCLKGA----IAAYFYGSLYLYSFGCGGNR 133 (588)
Q Consensus 86 g~~l~~~a~~~~~----------------~~~~~~~~------------~~~~~~~----~~~~l~~~R~l~GiG~g~~~ 133 (588)
|+++.++++.+.. ..+..|.. ..|.+.. .+.+++++|+++|+|.+...
T Consensus 111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~ 190 (633)
T TIGR00805 111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF 190 (633)
T ss_pred HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence 9999998752210 01223311 0233322 36778899999999999999
Q ss_pred cchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheecccc----------------------chhHHHH
Q 007816 134 GTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEK----------------------SWWLGFL 191 (588)
Q Consensus 134 ~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~----------------------~w~~~f~ 191 (588)
+...+|+.|.+|+++ |++++++++....+|+++|+.+++++.+.+ +||..|+
T Consensus 191 ~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fl 264 (633)
T TIGR00805 191 PLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFL 264 (633)
T ss_pred hcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHH
Confidence 999999999999888 999999999999999999999998776422 3778888
Q ss_pred HHHHHHHHHHHHHHhh
Q 007816 192 VSSVANFIGLIALAAG 207 (588)
Q Consensus 192 i~~~~~~~~~~~~~~~ 207 (588)
+.+++.++..+.++..
T Consensus 265 i~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 265 ICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 8777766555544443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-16 Score=169.90 Aligned_cols=174 Identities=11% Similarity=0.051 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccc-----hhHHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLS-----RFATCLIFGTL 82 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~G-----Rr~~i~i~~~i 82 (588)
...+...++.+.+. +.+...+.+++++++|+|+++++...+...+...+-.+ +|.++|+ ++ ||+.+.++.++
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHHHHHHH
Confidence 34445578888888 77777888999999999999999999999999888666 9999999 78 78888888766
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
.. ...+..++.. + .......+.+++.+++.+....+..++..|..+ +++ +.++...++.
T Consensus 105 ~~-~~~~~~l~~~-~---------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~ 163 (468)
T TIGR00788 105 GS-AILYGLLPGK-V---------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWM 163 (468)
T ss_pred HH-HHHHHhcccc-c---------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHH
Confidence 53 1222223310 1 123344457899999999999999999999998 442 2356677888
Q ss_pred HHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHH
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
|...++|.++|+.++|++.+..+|+..|++.+.+.++..+..+
T Consensus 164 ~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~ 206 (468)
T TIGR00788 164 WGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSN 206 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999889999999998877666644333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-16 Score=169.56 Aligned_cols=181 Identities=8% Similarity=-0.036 Sum_probs=130.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhh----cccch-hHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISD----TFLSR-FATCL 77 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D----~~~GR-r~~i~ 77 (588)
++.++-+..-+.++..++.+..+.+++..|+++.+|++...+|.+..+..+..++..|+.|+++| | +|| |+-++
T Consensus 3 l~~~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il 81 (473)
T PRK10429 3 ISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWIL 81 (473)
T ss_pred CchhHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHh
Confidence 44555566667888888999999999999999999999999999999999999999999999999 5 699 55666
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCC-CCCchhhhhhh
Q 007816 78 IFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFD-ENDPKGAKALA 156 (588)
Q Consensus 78 i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~-~~~~~~~~~Rg 156 (588)
++.+...++.+++-..++.+. ....+.+++.-++.+++.........++++|+++ +++ |.
T Consensus 82 ~g~i~~~i~~~llf~~p~~~~-------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~ 142 (473)
T PRK10429 82 IGTLANSVVLFLLFSAHLFEG-------------TAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------RE 142 (473)
T ss_pred hhhHHHHHHHHHHHcCCCCCc-------------cHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HH
Confidence 677777776655533221110 1234556667777888888899999999999984 444 88
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhee-------ccccchhHHHHHHHHHHHHHHHH
Q 007816 157 SYFNFYLLATTVAAVIGVTGIVYV-------FTEKSWWLGFLVSSVANFIGLIA 203 (588)
Q Consensus 157 ~~~~~~~~~~~iG~~ig~~~~~~i-------~~~~~w~~~f~i~~~~~~~~~~~ 203 (588)
++.++-....++|..+.+.+...+ .+..+|+....+.+++.+++.++
T Consensus 143 ~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 143 QLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 888887777777755554433221 11235666655555554444433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-16 Score=165.88 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=109.1
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhccc----chhHHH-HHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFL----SRFATC-LIFG 80 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~----GRr~~i-~i~~ 80 (588)
+..+.--+.++..+..+..+.+++..|+++.+|++..++|.+.+...+..++..++.|+++|| . ||||.. .++.
T Consensus 8 ~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~~~~~Gr~~~~~~~~~ 86 (448)
T PRK09848 8 RTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDS-VNTRWGKFRPFLLFGT 86 (448)
T ss_pred HHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeec-CCCCCcCchHHHHHHH
Confidence 444455567778888888888899999999999999999999999999999999999999999 5 777755 5565
Q ss_pred HHHHHHHHHHHHhh-ccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 81 TLEVLALVMLTIQA-YSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 81 ~i~~ig~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
+...+..+++-..+ ..+. ....+.+++.-++.+++.+...+...++..|+.++. +| |.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~~---r~~~~ 148 (448)
T PRK09848 87 APLMIFSVLVFWVPTDWSH-------------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQP--QS---RARLG 148 (448)
T ss_pred HHHHHHHHHHHhCcCCCCc-------------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCH--HH---HHHHH
Confidence 55555444432111 1110 123444566667888889999988888888887642 23 55665
Q ss_pred HHHHHH-----HHHHHHHHhhhhhe
Q 007816 160 NFYLLA-----TTVAAVIGVTGIVY 179 (588)
Q Consensus 160 ~~~~~~-----~~iG~~ig~~~~~~ 179 (588)
++..+. .++|..++|.+.+.
T Consensus 149 ~~r~~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 149 AARGIAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554432 44566666666544
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-15 Score=148.42 Aligned_cols=148 Identities=15% Similarity=0.089 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHH
Q 007816 11 YVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVML 90 (588)
Q Consensus 11 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~ 90 (588)
+....+++.+.. ..+..+.+.+++.++++..|++++..++..+.+++++..|++.+| +|+|+.+++|..++++|+.+.
T Consensus 18 ~t~lFfl~G~~~-~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF 95 (422)
T COG0738 18 LTSLFFLWGFIT-CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALF 95 (422)
T ss_pred HHHHHHHHHHHh-hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHH
Confidence 334444443333 355578899999999999999999999999999999999999999 999999999999999999888
Q ss_pred HHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 007816 91 TIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAA 170 (588)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~ 170 (588)
.-++. ..++.+++++.++.|.|.|...+++.+|++.+.+++. -.+-+++.+.+..+|.
T Consensus 96 ~pAa~----------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa 153 (422)
T COG0738 96 WPAAS----------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGA 153 (422)
T ss_pred hhhhh----------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHH
Confidence 65543 3378899999999999999999999999999999866 4566788888999999
Q ss_pred HHHhhhhheecc
Q 007816 171 VIGVTGIVYVFT 182 (588)
Q Consensus 171 ~ig~~~~~~i~~ 182 (588)
.+||.+++++..
T Consensus 154 ~~gp~~g~~lil 165 (422)
T COG0738 154 ILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHHH
Confidence 999999877654
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-15 Score=161.46 Aligned_cols=181 Identities=9% Similarity=0.017 Sum_probs=131.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcc---cch-hHHHHHHH
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTF---LSR-FATCLIFG 80 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~---~GR-r~~i~i~~ 80 (588)
.++-+..-+.++..++.+..+..++..|+++.+|++..++|.+.++..+..++..|+.|+++||. +|| |+-++++.
T Consensus 8 ~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~ 87 (444)
T PRK09669 8 TKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFA 87 (444)
T ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHH
Confidence 44445555677777888888888999999999999999999999999999999999999999983 576 45566677
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 81 TLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 81 ~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
+...++.++.-..++.+. ....+.+++.-++.+++.........++.+|+++. ++| |+++.+
T Consensus 88 ~~~~i~~~l~f~~p~~~~-------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~--~~e---R~~l~~ 149 (444)
T PRK09669 88 IPFGVVCLLTFYTPDFGA-------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITND--PRE---RHSLQS 149 (444)
T ss_pred HHHHHHHHHHHhCCCCCc-------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCC--HHH---HHHHHH
Confidence 777777655443332111 23456677777777877777877888999999853 222 788888
Q ss_pred HHHHHHHHHHHHHhhhhhe----ec---cccchhHHHHHHHHHHHHHHHH
Q 007816 161 FYLLATTVAAVIGVTGIVY----VF---TEKSWWLGFLVSSVANFIGLIA 203 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~----i~---~~~~w~~~f~i~~~~~~~~~~~ 203 (588)
+.....++|..+++.+... +. ...+|+..+.+.+++..+..++
T Consensus 150 ~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 150 WRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888777654322 21 1347887777766665444443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-14 Score=156.21 Aligned_cols=153 Identities=12% Similarity=-0.011 Sum_probs=121.3
Q ss_pred HHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 007816 27 ISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGK 106 (588)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~ 106 (588)
+...+.+++++|+|..+.+++.+.... ..++.+++|++.|| +|||+++.++.+++.+|+++++++.+.. +
T Consensus 47 sv~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~~~--i------ 116 (591)
T PTZ00207 47 NLISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQEV--I------ 116 (591)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhccc--c------
Confidence 455667899999999999999887443 34566778999999 9999999999999999999999873210 0
Q ss_pred CCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHH-Hhhhhheeccccc
Q 007816 107 SSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVI-GVTGIVYVFTEKS 185 (588)
Q Consensus 107 ~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~i-g~~~~~~i~~~~~ 185 (588)
..+.+.+++.|+++|+|.+...+.+...+.+.+| ++ ||+++++...+.++|+++ +++..+++. .+
T Consensus 117 -----~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~ 182 (591)
T PTZ00207 117 -----EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQLAFFS--DN 182 (591)
T ss_pred -----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh
Confidence 1267889999999999999999999999999986 55 999999999999999975 555555554 35
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 007816 186 WWLGFLVSSVANFIGLIA 203 (588)
Q Consensus 186 w~~~f~i~~~~~~~~~~~ 203 (588)
|+..|++.+++.++..++
T Consensus 183 ~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 183 TSAYFFFLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777766664444443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.1e-15 Score=154.97 Aligned_cols=160 Identities=11% Similarity=0.008 Sum_probs=131.1
Q ss_pred hHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007816 25 NGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDC 104 (588)
Q Consensus 25 v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~ 104 (588)
+......-+.+++++...+.+.+.++|+++.+++.+++|.+.|| +.-.+.+....+.+.+-.++.+...
T Consensus 64 i~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~~---------- 132 (495)
T KOG2533|consen 64 IVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAVH---------- 132 (495)
T ss_pred chhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 33333334567899999999999999999999999999999999 8966666666665555555555444
Q ss_pred CCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhhee----
Q 007816 105 GKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYV---- 180 (588)
Q Consensus 105 ~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i---- 180 (588)
+++.+++.|+++|+..+...|....+++-.+.+++ |+..+++++...++|.++|..+...+
T Consensus 133 ---------s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~ 197 (495)
T KOG2533|consen 133 ---------SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLN 197 (495)
T ss_pred ---------hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhc
Confidence 66789999999999999999999999999999888 99999999999999999998887664
Q ss_pred --ccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007816 181 --FTEKSWWLGFLVSSVANFIGLIALAAGKCL 210 (588)
Q Consensus 181 --~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~ 210 (588)
....||||.|.+.+++.++..++.++..|.
T Consensus 198 ~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 198 GSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred CCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 345799999999999887777776665553
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=150.93 Aligned_cols=150 Identities=11% Similarity=-0.022 Sum_probs=138.4
Q ss_pred hccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchh
Q 007816 35 NEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAI 114 (588)
Q Consensus 35 ~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~ 114 (588)
.+++.+++++|++.+++.+...+..++.|.+.|| +|+|--+++|.++..+.+++.++.. +
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~-------------------s 158 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN-------------------S 158 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc-------------------h
Confidence 3567788999999999999999999999999999 9999999999999999999999997 5
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHH
Q 007816 115 AAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSS 194 (588)
Q Consensus 115 ~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~ 194 (588)
+++++++|.+||+|.+...++..++++|.+|.+.. |++++++..-++.+|..+||..||.+.+..|.+.+|++.+
T Consensus 159 y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~ 233 (464)
T KOG3764|consen 159 YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLA 233 (464)
T ss_pred hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHH
Confidence 67899999999999999999999999999997652 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 007816 195 VANFIGLIALAAGKC 209 (588)
Q Consensus 195 ~~~~~~~~~~~~~~~ 209 (588)
+..++-..+.++..+
T Consensus 234 ~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 234 IVLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHHHHHHHheeC
Confidence 998887777665544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-15 Score=156.71 Aligned_cols=355 Identities=12% Similarity=0.050 Sum_probs=230.0
Q ss_pred HHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhh----cccchhHHHH-HHHHHHHHHHH
Q 007816 14 FSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISD----TFLSRFATCL-IFGTLEVLALV 88 (588)
Q Consensus 14 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D----~~~GRr~~i~-i~~~i~~ig~~ 88 (588)
.++...+.+....+.+..|+++.+|+++..+|.+..+..+..++..|+.|+++| | +||||-.+ +|.++..++.+
T Consensus 9 g~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~ 87 (428)
T PF13347_consen 9 GDLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFF 87 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHH
Confidence 356666677777788999999999999999999999999999999999999999 7 89776555 57777777776
Q ss_pred HHHHh-h-ccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCC-CCchhhhhhhhHHHHHHHH
Q 007816 89 MLTIQ-A-YSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDE-NDPKGAKALASYFNFYLLA 165 (588)
Q Consensus 89 l~~~a-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~-~~~~~~~~Rg~~~~~~~~~ 165 (588)
++-.. + +... ......+.+.-++..++.........+++.|+.+. ++ |.++.++-..+
T Consensus 88 llf~~~p~~~~~-------------~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~------R~~l~~~~~~~ 148 (428)
T PF13347_consen 88 LLFSPPPAGLSF-------------TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE------RTRLSSWRMIF 148 (428)
T ss_pred Hhhccccchhhh-------------hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh------hhhHHHHHHHH
Confidence 66644 2 1110 12345567778888999999999999999999974 33 88999998888
Q ss_pred HHHHHHHHhhhhheeccc-------cchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCC
Q 007816 166 TTVAAVIGVTGIVYVFTE-------KSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLS 238 (588)
Q Consensus 166 ~~iG~~ig~~~~~~i~~~-------~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (588)
.++|.++...+.+.+... .+|++...+.+++.+++.++..+..++.....++.
T Consensus 149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~-------------------- 208 (428)
T PF13347_consen 149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQ-------------------- 208 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccc--------------------
Confidence 888887665655544321 16888888877776666665555443300000000
Q ss_pred CCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 007816 239 LPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLA 318 (588)
Q Consensus 239 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (588)
.+..+..+ .++...+ + |...+.+....+....+...+
T Consensus 209 -------------------------~~~~~~~~-------------~~~~~~~----n-r~~~~l~~~~~~~~~~~~~~~ 245 (428)
T PF13347_consen 209 -------------------------EKKISLRD-------------SLRSLFR----N-RPFRILLLAFFLQWLAFALMN 245 (428)
T ss_pred -------------------------cccccccc-------------chhhhcc----c-chHHHHHHHHHHHHhhhhhhh
Confidence 00000000 0100000 0 111122222222222222222
Q ss_pred hchhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 007816 319 QLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVA 398 (588)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~ 398 (588)
....++.....+.+ . ..+.......+..++..++..++.+++++|+. +..+.++.+++.++.
T Consensus 246 ~~~~y~~~~vl~~~-~------~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~-----------~~~~~~~~~~~~~~~ 307 (428)
T PF13347_consen 246 TFLPYYFTYVLGNE-G------LISIFMLIFFVASIVGSPLWGRLSKRFGKKKV-----------YIIGLLLAALGFLLL 307 (428)
T ss_pred hHHHHHHHHHhcCc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHccceee-----------hhhhHHHHHHHHHHH
Confidence 22222332222222 1 12233334556666777777777666665553 557777777777766
Q ss_pred HHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCc-------chhhHHHHHHHHHHHHHHHHH
Q 007816 399 GLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPA-------GMKTLASSFTYLSLSFGYFLS 471 (588)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~-------~~rg~~~~~~~~~~~l~~~i~ 471 (588)
.+.. ..+.+++.+..++.+++....+...+++..|..+. +..|...|++++...++..++
T Consensus 308 ~~~~-------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la 374 (428)
T PF13347_consen 308 FFLG-------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLA 374 (428)
T ss_pred HHHH-------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHH
Confidence 6552 13566777888889999999999999999998873 456999999999999999999
Q ss_pred HHHHHHhhhhh
Q 007816 472 SAFVDIINAVT 482 (588)
Q Consensus 472 ~~~~~~~~~~~ 482 (588)
..+.+.+.+..
T Consensus 375 ~~i~g~~l~~~ 385 (428)
T PF13347_consen 375 GAIVGLLLALV 385 (428)
T ss_pred HHHHHHHHHHh
Confidence 99888765543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=162.59 Aligned_cols=426 Identities=14% Similarity=0.075 Sum_probs=252.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH---HHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 9 FVYVVFSALENMGFIANGISMV---LYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 9 ~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
|.+++..++.++..+|+....- ..+.++++-+..+++|+.++......+..++.+.+.|| ||.|.+.++|.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHH
Confidence 7788888888888888877444 55678999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLA 165 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~ 165 (588)
|.++.++++++++ +++..=++.|+|.|+++......+..+|++ + |+.+.++-...
T Consensus 124 g~~lssF~~~i~~------------------l~lt~gvi~G~G~~~~~~paiviv~~YF~k-k------R~lA~Gia~~G 178 (509)
T KOG2504|consen 124 GLLLSSFATSLWQ------------------LYLTFGVIGGLGLGLIYLPAVVILGTYFEK-K------RALATGIAVSG 178 (509)
T ss_pred HHHHHHHHhhHHH------------------HHHHHHHHhhccchhhhcchhhhhhhHhHH-H------HHHHHhhhhcc
Confidence 9999999985432 344445679999999999999999988873 2 88999988777
Q ss_pred HHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchh
Q 007816 166 TTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEE 245 (588)
Q Consensus 166 ~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 245 (588)
..+|..+=|.+.-++.+..|||..+++...+.+-+.+.....+|......+. ...+. +....+.+..+..
T Consensus 179 sG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~--------~~~~~~~~~~~~~ 248 (509)
T KOG2504|consen 179 TGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDL--------RNSAASVESTPKP 248 (509)
T ss_pred CCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhh--------ccccccccccccc
Confidence 7888777777888888899999999998888766666666655533222221 00000 0000000000000
Q ss_pred hhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCccc------cc---ccchHHHHHHHHHHHHHHHHHHHHHh
Q 007816 246 LYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRV------CT---VTQVEEVKILTRMMPILASTILMNTC 316 (588)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (588)
. + .+... .+.+..+ .........+ .++..|+. +. ....++ +.+..+.+.......+..
T Consensus 249 ~-~----~~~~~-~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~ll~~--~~fl~~~~~~~~~~~g~~ 315 (509)
T KOG2504|consen 249 V-E----LRISE-RDSGLKK-LSLSNLATLK----RGPDKWRNSPLQAFLSMLDLSLLKD--PKFLLLALSNLFAYLGFN 315 (509)
T ss_pred c-c----ccccc-CCCCCCc-ccccchhhhh----hCCccccccchhhhhhhhhHHHHcC--chHHHHHHHHHHHHHHHH
Confidence 0 0 00000 0000000 0000000000 00111110 00 000111 111111111111111111
Q ss_pred hhhchhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHH
Q 007816 317 LAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMT 396 (588)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~ 396 (588)
.-.++........+.+... ........++.+.++-++.+.+.|+. . .+......++.++++++.+
T Consensus 316 ~p~~~l~~~~~~~g~~~~~--aa~l~Siigi~~i~gRi~~G~laD~~----~---------~~~~~~~~~~ll~~gl~~~ 380 (509)
T KOG2504|consen 316 VPFVYLPSYAKSLGLSSND--AAFLLSIIGVSDIIGRIILGLLADKP----G---------IRALVLFLLTLLIAGLARL 380 (509)
T ss_pred HHHHHHHHHHhhcCCChhh--hHHHHHHHHHhhhhhhhhhhhhcCcc----c---------cchHHHHHHHHHHHHHHHH
Confidence 1111111111112222110 01122334444555555555555443 1 1233444555666666553
Q ss_pred HHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007816 397 VAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVD 476 (588)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~ 476 (588)
..... .+++.++...+++++..+...........++.+.+.-..+.|+..+.+.++..+++.+.+
T Consensus 381 ~~p~~---------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag 445 (509)
T KOG2504|consen 381 FLPFA---------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG 445 (509)
T ss_pred HHHHh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence 33322 345566677778888888888887788899999999999999999999999999988888
Q ss_pred HhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhc-cccccc
Q 007816 477 IINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAA-WYKYKP 532 (588)
Q Consensus 477 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~-e~~~~~ 532 (588)
.+.+.+ ++|+..|++.+++.+++.++ ++..+ +.+.+.
T Consensus 446 ~~~d~t------------------g~Y~~~f~~~g~~~~~s~~~-~~~~~~~~~~~~ 483 (509)
T KOG2504|consen 446 LLYDIT------------------GNYDHAFYFCGLCFLLSAVL-LLILRECLKRRE 483 (509)
T ss_pred eeeecc------------------CCeeeehhhcChHHHHHHHH-HHHhHHHHHhcc
Confidence 665433 22555677777777766654 44455 444443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-13 Score=144.89 Aligned_cols=176 Identities=14% Similarity=0.075 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHH--HHHHHHHHHHHhhhh-HHhhhcccchhHHHHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNT--LTNFFGSTFLLCLVG-GFISDTFLSRFATCLIFGTLEV 84 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i--~~~~~~~~~~~~l~~-G~l~D~~~GRr~~i~i~~~i~~ 84 (588)
++.+...++.+.+.+.-+.+.++.|++ +.|.|..++|.. .+......++.+++. ++..|| +||||.+++.+.+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHH
Confidence 455666777777777767777777775 569999999997 455677776777666 668999 899999766653322
Q ss_pred H-HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007816 85 L-ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 163 (588)
Q Consensus 85 i-g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~ 163 (588)
. .....+... +. ......++..-.+.++..+...+....+..|..++++ ++...+...
T Consensus 81 ~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~ 139 (390)
T TIGR02718 81 SACLASLALVG--PD-------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQI 139 (390)
T ss_pred HHHHHHHHcCC--cc-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHH
Confidence 2 122222111 00 0122334455556667777777777777777766554 677777777
Q ss_pred HHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHh
Q 007816 164 LATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 164 ~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
....+|..+|....+++.++.|||..|++.+++.++..+..++
T Consensus 140 ~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 140 AGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 7778899999888888888899999999988876655554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-14 Score=139.89 Aligned_cols=135 Identities=15% Similarity=0.004 Sum_probs=113.9
Q ss_pred hccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchh
Q 007816 35 NEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAI 114 (588)
Q Consensus 35 ~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~ 114 (588)
++.+-+..-.|.+-++|++..++.++..|.++|+ +|||++++++++..++..++.+.+. |
T Consensus 61 ~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~-------------------~ 120 (451)
T KOG2615|consen 61 EPDGASVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSR-------------------N 120 (451)
T ss_pred CcccccchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHH-------------------H
Confidence 3344466778999999999999999999999999 8999999999999999999999987 4
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheecc-c-cchhHHHHH
Q 007816 115 AAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFT-E-KSWWLGFLV 192 (588)
Q Consensus 115 ~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~-~-~~w~~~f~i 192 (588)
...++++|++.|+.-|-.. .+-++++|+.++++ |+..++.......+|..+||.+|||++. . ..=+.+|..
T Consensus 121 F~afv~aR~l~Gi~kgnl~-v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~al 193 (451)
T KOG2615|consen 121 FAAFVLARFLGGIFKGNLS-VIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFAL 193 (451)
T ss_pred HHHHHHHHHhhhhccCchH-HHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHH
Confidence 5578888999999988654 57889999999888 9999999999999999999999999987 1 222455555
Q ss_pred HHHH
Q 007816 193 SSVA 196 (588)
Q Consensus 193 ~~~~ 196 (588)
+..+
T Consensus 194 P~~~ 197 (451)
T KOG2615|consen 194 PCLL 197 (451)
T ss_pred HHHH
Confidence 4433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-12 Score=135.46 Aligned_cols=392 Identities=13% Similarity=0.060 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHH
Q 007816 9 FVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 88 (588)
Q Consensus 9 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~ 88 (588)
+.+...+++.-+.+-...+.++.|+++ .|+|..|+|.+.+...+...+.+++.|+++||...+||.+.+..++..+...
T Consensus 5 ~rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~ 83 (400)
T PF03825_consen 5 FRLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALL 83 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHH
Confidence 345666677666666667777788875 6699999999999999999999999999999943466776666565555443
Q ss_pred HHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 007816 89 MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTV 168 (588)
Q Consensus 89 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~i 168 (588)
+....+ +++.+++..++..+......|...++.-+....++ .+=.|-|..+-..+. +
T Consensus 84 ~~~~~~-------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~--~~YG~iRlwGSiGf~--~ 140 (400)
T PF03825_consen 84 LLAFSS-------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRG--KDYGRIRLWGSIGFI--V 140 (400)
T ss_pred HHHHhc-------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccc--CCCCcchhhhhHHHH--H
Confidence 444333 45566777777888878888888888777765322 112245555553322 1
Q ss_pred HHH-HHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 007816 169 AAV-IGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELY 247 (588)
Q Consensus 169 G~~-ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 247 (588)
++. .+..+.++.. ..+..+.+++.+...++.... ....|+.+ +++++ +++.
T Consensus 141 ~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~---~~~~~-------------------~~~~---- 192 (400)
T PF03825_consen 141 AALAFGGLLGGYLG-ISGTSLIFYIAAILSLLLAGF-ALFLPKTP---PKRSA-------------------KESV---- 192 (400)
T ss_pred HHHHHHHHHHhhhc-cccccHHHHHHHHHHHHHHHH-HHhCCCCc---ccccc-------------------CCCc----
Confidence 111 1122222221 112234555555443222221 12223211 00000 0000
Q ss_pred hhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHH
Q 007816 248 EINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQ 327 (588)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 327 (588)
++.... +.|+.+++ |+.+..+............++.+.+.+..+
T Consensus 193 -----------------~~~~~~-------------~~~~llk~------~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~ 236 (400)
T PF03825_consen 193 -----------------KKLLGL-------------DALKLLKN------PRFLVFLLAAFLIGISHAAYYTFFSIYLQE 236 (400)
T ss_pred -----------------ccccch-------------HHHHHhcC------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00111111 111111111111111122222222333222
Q ss_pred hhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007816 328 GAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRN 407 (588)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 407 (588)
..+... ...+....+..+.=++.....+++ .+|. +..+.+.++.+..++=..++....
T Consensus 237 ~gg~~~------~~~g~~~~l~~~aEi~~f~~~~~~----~~r~-------g~~~ll~~a~~~~~vR~~l~a~~~----- 294 (400)
T PF03825_consen 237 LGGYSG------STIGILWALGVVAEIPFFFFSGRF----LKRF-------GIKWLLLLALVAYAVRWLLYAYFS----- 294 (400)
T ss_pred cccchh------hHHHHHHHHHHHHHHHHHHHHHHH----HHhc-------CHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 111111 111112222233333444444555 3333 233445666666555555544331
Q ss_pred hccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHH-HHHHHHHHHHHHHHHhhhhhcccC
Q 007816 408 AFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYL-SLSFGYFLSSAFVDIINAVTKRIT 486 (588)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~-~~~l~~~i~~~~~~~~~~~~~~~~ 486 (588)
+ +....++.+.+...+-|+..++.......|+.+.+|++.|++++++.+. ...+|..++..+.+.+.+..+.
T Consensus 295 --~---~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~-- 367 (400)
T PF03825_consen 295 --D---PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA-- 367 (400)
T ss_pred --C---CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc--
Confidence 0 0011111122223467888888999999999999999999999999875 5689999999999988663321
Q ss_pred CCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhccc
Q 007816 487 PSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWY 528 (588)
Q Consensus 487 ~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~ 528 (588)
. + .-.+...|.+.+++.++..++++++.||+
T Consensus 368 ~---~--------~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 368 R---G--------MFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred h---h--------hhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 0 0 00122356667777777777777666553
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-13 Score=144.15 Aligned_cols=182 Identities=12% Similarity=0.024 Sum_probs=131.1
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhc---ccchhHHHH-HHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDT---FLSRFATCL-IFGT 81 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~---~~GRr~~i~-i~~~ 81 (588)
++-+..-+.++..++.+..+..++..|+++.+|+++..+|.+..+.-+-.++.-|+-|+++|| ++||||-.+ ++.+
T Consensus 9 ~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i 88 (460)
T PRK11462 9 KEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGAL 88 (460)
T ss_pred hHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHH
Confidence 334445567777888888888899999999999999999999999999999999999999996 279876555 5657
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
...++.+++-..+..+. ......+.+.-++..++.......-.++.+|+++. ++| |.++.++
T Consensus 89 ~~~i~~~llf~~p~~s~-------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d--~~e---Rt~l~s~ 150 (460)
T PRK11462 89 PFGIVCVLAYSTPDLSM-------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND--PTQ---RISLQSW 150 (460)
T ss_pred HHHHHHHHHHhCCCCCc-------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC--HHH---HHHHHHH
Confidence 77776655443331110 12345566677778888899999999999999974 222 8899999
Q ss_pred HHHHHHHHHHHHhhhhheecc-------ccchhHHHHHHHHHHHHHHHHHH
Q 007816 162 YLLATTVAAVIGVTGIVYVFT-------EKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~-------~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
...+.++|..+++.+...+.. ..+|+....+.+++.+++..+.+
T Consensus 151 r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 151 RFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999888777665433221 13577665555555444444333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=140.75 Aligned_cols=390 Identities=9% Similarity=0.045 Sum_probs=217.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
.+++++|......++-.+++-...++.++++++..|+|.+++|.+.++..+...+.+++.|.++|| +|.||-+++...+
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~ 82 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAI 82 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHH
Confidence 567899999999999888888888999999999999999999999999999999999999999999 8977765544433
Q ss_pred HH--HHHHHH-HHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHh----ccccccchhhhhhccCCCCCchhhhhh
Q 007816 83 EV--LALVML-TIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFG----CGGNRGTLPAFGAGQFDENDPKGAKAL 155 (588)
Q Consensus 83 ~~--ig~~l~-~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG----~g~~~~~~~~~iae~~~~~~~~~~~~R 155 (588)
.. .|.... .+.+-... | +.++-++-|+. .....|+..+|+.+... ..
T Consensus 83 l~~l~~pff~~v~~pll~~---------------n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--------~~ 136 (412)
T PF01306_consen 83 LLLLFGPFFIYVFGPLLQS---------------N---FWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR--------RN 136 (412)
T ss_dssp HHHTCHHHHHHTHHHHHHT---------------T----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--------HH
T ss_pred HHHHHHHHHHHHHHHHHHH---------------H---HHHHHHHHHHHHHHHHcccchHHHHHHHHHHH--------Hh
Confidence 32 233332 23221110 1 33344443443 44444555554444322 12
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhc
Q 007816 156 ASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNR 235 (588)
Q Consensus 156 g~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (588)
+.=++-..+...+|.+++..++|++.. .+-+..|++.....++..++.+..+|...+..+
T Consensus 137 ~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~------------------- 196 (412)
T PF01306_consen 137 GFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAE------------------- 196 (412)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS--------------------
T ss_pred cCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhh-------------------
Confidence 333344445566888888888888765 455678887766554444444443322110000
Q ss_pred CCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHH
Q 007816 236 KLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNT 315 (588)
Q Consensus 236 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 315 (588)
..+ . .....++.+..|-.+ ..+ .|+.+....+.......+.
T Consensus 197 ---~~~---~--------------~~~~~~~~~~~~~~~------------------l~k-~~~fw~~~l~v~g~~~~Y~ 237 (412)
T PF01306_consen 197 ---VAD---A--------------LGAKKDKVSLKDVLS------------------LFK-MRNFWFFVLFVIGVAAIYD 237 (412)
T ss_dssp ---SST---T--------------SSS------HHHHHH------------------HTT-SHHHHHHHHHHHHHHHHHH
T ss_pred ---hhc---c--------------cccCCCCCcHHHHHH------------------Hhc-chhHHHHHHHHHHHHHHHH
Confidence 000 0 000000000000000 000 1223232222223333333
Q ss_pred hhhhchhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHH
Q 007816 316 CLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSM 395 (588)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~ 395 (588)
.+.|.++.+...... +...+ ....+.+.....+.=.+...+..+++.|.+.|.. +.++..++++=.
T Consensus 238 vfdqqf~~y~~~~f~-~~~~g--~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~-----------Lllag~i~~iRi 303 (412)
T PF01306_consen 238 VFDQQFPIYFASFFQ-SAGQG--NQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNL-----------LLLAGVIMAIRI 303 (412)
T ss_dssp HHHHHHHHHHHHTSS-SHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-ccccC--hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhH-----------HHHHHHHHHHHH
Confidence 333333333221100 00000 1112333333344444455556666555565543 445555555555
Q ss_pred HHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHH-HHHHHHHHHHHHHH
Q 007816 396 TVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFT-YLSLSFGYFLSSAF 474 (588)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~-~~~~~l~~~i~~~~ 474 (588)
...+.. .+.+++.+.=.+-++-.........-|+.+.+|++..++...+. .+...+++.+.+.+
T Consensus 304 ~~~~~~---------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~ 368 (412)
T PF01306_consen 304 IGSGFA---------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPL 368 (412)
T ss_dssp HHHHT-----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHhhh---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 544433 35566666667777777788888899999999999998888875 57888999998888
Q ss_pred HHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Q 007816 475 VDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAA 526 (588)
Q Consensus 475 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~ 526 (588)
.+.+++.. +++..|++.+++.++..++..+..+
T Consensus 369 ~G~lyd~~-------------------G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 369 AGYLYDRI-------------------GFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHhhHhhc-------------------CcHHHHHHHHHHHHHHHHHheeeec
Confidence 88876532 3456788888887777777666654
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-13 Score=130.65 Aligned_cols=156 Identities=9% Similarity=0.060 Sum_probs=140.4
Q ss_pred hHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007816 25 NGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDC 104 (588)
Q Consensus 25 v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~ 104 (588)
-+..+..-+++++|+|...+|++++.-.+.-.+.++++.+++.| +|-.+++..+.++..+|.++-....
T Consensus 30 svgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~~---------- 98 (395)
T COG2807 30 SVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLGG---------- 98 (395)
T ss_pred hhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhccc----------
Confidence 34456677889999999999999999999999999999999999 9999999999999999999988763
Q ss_pred CCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheecccc
Q 007816 105 GKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEK 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~ 184 (588)
...++.+-.+.|.|++......|..|-+-+|++ -+.+++.|....++|.++++.+...+.++.
T Consensus 99 ----------~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~ 161 (395)
T COG2807 99 ----------LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHS 161 (395)
T ss_pred ----------HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 346999999999999999999999999999954 579999999999999999999988888776
Q ss_pred -chhHHHHHHHHHHHHHHHHHHhhc
Q 007816 185 -SWWLGFLVSSVANFIGLIALAAGK 208 (588)
Q Consensus 185 -~w~~~f~i~~~~~~~~~~~~~~~~ 208 (588)
+||..+.+-+.+.+++++++++..
T Consensus 162 ~gW~~aL~~WAl~allAl~~WlPq~ 186 (395)
T COG2807 162 GGWRGALGFWALLALLALLIWLPQA 186 (395)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhc
Confidence 799999999999888888888764
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.5e-13 Score=137.84 Aligned_cols=406 Identities=13% Similarity=0.063 Sum_probs=240.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcc---cchhH-HHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTF---LSRFA-TCLIF 79 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~---~GRr~-~i~i~ 79 (588)
+.|.-...-..++..++.+--++..+..|+++.+|+++..+|.+..+.-+-.++.-|+-|.+.||- +|||| =++++
T Consensus 10 s~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g 89 (467)
T COG2211 10 SLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWG 89 (467)
T ss_pred cHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHH
Confidence 344445556678888888999999999999999999999999999999999999999999999974 67654 56666
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
.+.+.+.+.++=.++.+.. .......++--++.+++...+.-.-.++.+|+.+. |+| |.++.
T Consensus 90 ~ip~~i~~~l~F~~p~~~~-------------~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~E---R~~l~ 151 (467)
T COG2211 90 AIPFAIVAVLLFITPDFSM-------------TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQE---RASLT 151 (467)
T ss_pred hHHHHHHHHHHHcCCCccc-------------CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHH---HHHHH
Confidence 6888888877776653221 23455667777889999999999999999999864 444 88999
Q ss_pred HHHHHHHHHHHHHHhhhhhee-----cc--ccchhHHHHHHHHHHHHHHHHHHhhcc-ceeecCCCCChhHHHHHHHHHH
Q 007816 160 NFYLLATTVAAVIGVTGIVYV-----FT--EKSWWLGFLVSSVANFIGLIALAAGKC-LYRIQQPGESPLVRVAQVLVVA 231 (588)
Q Consensus 160 ~~~~~~~~iG~~ig~~~~~~i-----~~--~~~w~~~f~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 231 (588)
++-..+.++|..+...+...+ .+ ..||+..-.+.+++..+..+.-++..+ |..+..+.+
T Consensus 152 s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~------------- 218 (467)
T COG2211 152 SWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTK------------- 218 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCc-------------
Confidence 999999999977665544332 22 356765555555544433333222221 111000000
Q ss_pred HHhcCCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 007816 232 IKNRKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTI 311 (588)
Q Consensus 232 ~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (588)
+ +...+..+.... + .++ |..+..+.. ..
T Consensus 219 -----------~--------------------~~~~~~~~~~~~-------------~----~~N-rp~~~~l~~---~l 246 (467)
T COG2211 219 -----------T--------------------GVKLKLKDSFLL-------------I----FKN-RPLLLLLLM---NL 246 (467)
T ss_pred -----------c--------------------cccccHHHHHHH-------------H----Hcc-chHHHHHHH---HH
Confidence 0 000000000000 0 000 111111111 11
Q ss_pred HHHHhhhhchhHHHHHh-hhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHH
Q 007816 312 LMNTCLAQLQTFSITQG-AAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVL 390 (588)
Q Consensus 312 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l 390 (588)
+++...+...+...+.. ..++.. ...+...........+++.++..++.+++++|+. +.+|.++
T Consensus 247 ~~~~~~~i~~s~~~yy~~y~lg~~----~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~-----------~~~~~~~ 311 (467)
T COG2211 247 LLFIAFNIRGSIMVYYVTYVLGDP----ELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKL-----------FLIGLLL 311 (467)
T ss_pred HHHHHHHHHhhhhheeEEEEcCCh----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHH-----------HHHHHHH
Confidence 11111111111111110 111111 2222223333344444445666666666666653 5567777
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccc-------CcchhhHHHHHHHHH
Q 007816 391 SAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEA-------PAGMKTLASSFTYLS 463 (588)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-------P~~~rg~~~~~~~~~ 463 (588)
..++.++..+. .+.+.+.+++..++.+++....++..|+++.|.. -.+..|...|.+++.
T Consensus 312 ~~i~~~~~~f~-------------~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~ 378 (467)
T COG2211 312 LAVGYLLLYFT-------------PAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFF 378 (467)
T ss_pred HHHHHHHHHhh-------------cCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHH
Confidence 77766666554 1234555566667888888899999999998754 455668888999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCCCCccCC-CCCCcchH---HHHHHHHHHHHHHHHHHHHhhccc
Q 007816 464 LSFGYFLSSAFVDIINAVTKRITPSKQGWLHGK-DINKNNVN---LFYWFLAIVSVLNLVLYLYAAAWY 528 (588)
Q Consensus 464 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~---~~f~~~a~~~~~~~v~~~~~~~e~ 528 (588)
+-++..++..+.+++.. ..|+.++. +..+..+. ..+.+.-++..+...+...++|-+
T Consensus 379 ~K~g~ala~~~~g~~L~--------~~Gyv~~~~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~~y~L~ 439 (467)
T COG2211 379 RKLGLALAGFIPGWILG--------AIGYVPNVSAQSASALFGIRFLFIILPALLLLLAAIIIFFYKLN 439 (467)
T ss_pred HHHHHHHHHHHHHHHHH--------HcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999888744 34666653 23333333 344444333333333333355544
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-14 Score=152.39 Aligned_cols=173 Identities=12% Similarity=0.110 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHH
Q 007816 9 FVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 88 (588)
Q Consensus 9 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~ 88 (588)
...+...++..+.+|++..+++.|+++.+|++..+.+++.....++..++.+++|+++|| +|||+++.++.++..++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~ 331 (490)
T PRK10642 253 LTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALFVLAI 331 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHH
Confidence 333444556678899999999999999999999888888888899999999999999999 8999999988876555443
Q ss_pred HHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 007816 89 MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTV 168 (588)
Q Consensus 89 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~i 168 (588)
....... ..+...++++|++.|++.+......+.++.|++|++. |++.+++.+....+
T Consensus 332 ~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~~~~~~~ 389 (490)
T PRK10642 332 PAFILIN----------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAAAFNISVL 389 (490)
T ss_pred HHHHHHh----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHHHHHHHHH
Confidence 3221110 1145578889999999888888888899999999888 99999985555566
Q ss_pred HHHHHhhhhheeccc-cchhHHHHHHHHHHHHHHHHH
Q 007816 169 AAVIGVTGIVYVFTE-KSWWLGFLVSSVANFIGLIAL 204 (588)
Q Consensus 169 G~~ig~~~~~~i~~~-~~w~~~f~i~~~~~~~~~~~~ 204 (588)
+..++|.+.+++.+. .+|+.++++..+..+++.+..
T Consensus 390 ~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (490)
T PRK10642 390 VAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG 426 (490)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 667888888887654 357777666555544444443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-10 Score=124.05 Aligned_cols=406 Identities=13% Similarity=0.047 Sum_probs=215.9
Q ss_pred CcchHHHHHHHHHHHH-HHHHHhHHHHHHHchhccCC----------------------------C-hhhHHHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALEN-MGFIANGISMVLYFKNEMHF----------------------------D-LAGASNTLTNFFG 53 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~----------------------------~-~~~~~~i~~~~~~ 53 (588)
++|.+|.=++-++.+. ++...+....++|+++...- + ..-.+..+++..+
T Consensus 2 tr~~i~~W~lyd~ans~f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l 81 (477)
T PF11700_consen 2 TRREIWSWALYDWANSPFATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGL 81 (477)
T ss_pred chhHHHHHHHhHhhcccchhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHH
Confidence 3566666666676655 35555666778888765311 1 1223567778888
Q ss_pred HHHHHhhhhHHhhhcccchhHHHHHHHHH-HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhcccc
Q 007816 54 STFLLCLVGGFISDTFLSRFATCLIFGTL-EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGN 132 (588)
Q Consensus 54 ~~~~~~l~~G~l~D~~~GRr~~i~i~~~i-~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~ 132 (588)
..++..|+-|.++|+ -||||-++....+ .++.++++.+.. +.+++...+.-++.-++.+..
T Consensus 82 ~~all~P~lGa~aD~-~~~Rk~~l~~~~~~~~~~~~~l~~v~-----------------~~~~~~~~~l~iia~v~~~~~ 143 (477)
T PF11700_consen 82 LQALLAPFLGAIADY-GGRRKRFLLIFTLLGVLATALLWFVS-----------------PGQWWLALVLFIIANVGYEAS 143 (477)
T ss_pred HHHHHHHHHHHHHcc-cccchHHHHHHHHHHHHHHHHHHHhC-----------------cchHHHHHHHHHHHHHHHHHH
Confidence 889999999999999 6777766655444 445666666653 235555555566666788888
Q ss_pred ccchhhhhhccCCCCCchhhh---------------------hhhhHHHHHHHHHHHHHHHHhhhhheec--------cc
Q 007816 133 RGTLPAFGAGQFDENDPKGAK---------------------ALASYFNFYLLATTVAAVIGVTGIVYVF--------TE 183 (588)
Q Consensus 133 ~~~~~~~iae~~~~~~~~~~~---------------------~Rg~~~~~~~~~~~iG~~ig~~~~~~i~--------~~ 183 (588)
.....+|.-|++++++. .+. .|++.-+.-+...++|..+...+.-.+. ..
T Consensus 144 ~vfyna~LP~la~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~ 222 (477)
T PF11700_consen 144 NVFYNAYLPDLARPEPR-VRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNT 222 (477)
T ss_pred HHHHHHHhHhhcCCChh-hhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 88999999999997762 000 0167777766677777777655432221 12
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccceee--cCCCC-ChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhcccccc
Q 007816 184 KSWWLGFLVSSVANFIGLIALAAGKCLYRI--QQPGE-SPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTWER 260 (588)
Q Consensus 184 ~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~ 260 (588)
.+-|..+.+.++..++..+-.+...|+.+. ..+.. +......+.++..+|+
T Consensus 223 ~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~-------------------------- 276 (477)
T PF11700_consen 223 WAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKE-------------------------- 276 (477)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHH--------------------------
Confidence 334677766666533333333332222111 00110 0111111111111110
Q ss_pred cCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhch---hHHHHHhhhcCCCCCc
Q 007816 261 IPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQ---TFSITQGAAMDPHLGS 337 (588)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 337 (588)
.+..|.+.+.+. .-.++.-..+... ..+..+..+++..
T Consensus 277 ---------------------------------~~~~~~~~~fLi---a~~l~~dg~~ti~~~~~i~a~~~lg~s~~--- 317 (477)
T PF11700_consen 277 ---------------------------------IRKLRQLFLFLI---AYFLYSDGVNTIISFAGIYATEVLGMSTT--- 317 (477)
T ss_pred ---------------------------------HHhChHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCcCHH---
Confidence 000111211111 1111111111111 1122222233221
Q ss_pred ccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccc
Q 007816 338 IKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQI 417 (588)
Q Consensus 338 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (588)
.-....+...+..+++..+..++.++++.|. .+.+.+..++. ....+.+..-.... ..+ ..
T Consensus 318 ---~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~---------~~~l~~~l~~~-~~i~~~g~~G~~~~----~~g--~~ 378 (477)
T PF11700_consen 318 ---QLIVFGLVVQIVAIIGALLFGWLQDRFGPKT---------KRTLLISLILW-IIIPLYGLFGFWPS----FFG--LK 378 (477)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCch---------hHHHHHHHHHH-HHHHHHHHHHhhhc----ccC--cc
Confidence 1112222333344444444444433334331 11222222222 22222222110000 111 12
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCC
Q 007816 418 SLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKD 497 (588)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~ 497 (588)
+.+.+.+.-++.|+..+..++.+-++..|+.|++..+...|++.++....+++++.+.+.+.+.++.
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~------------- 445 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS------------- 445 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------
Confidence 2333444445778888899999999999999999999999999999999999999999998775532
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 007816 498 INKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYK 531 (588)
Q Consensus 498 ~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~ 531 (588)
..+-++...++.+++.++. ++++..|++
T Consensus 446 -----~r~g~~~l~~lf~~gl~ll-~~v~~~~g~ 473 (477)
T PF11700_consen 446 -----QRYGFLFLLVLFLIGLILL-FFVDVEKGR 473 (477)
T ss_pred -----chhHHHHHHHHHHHHHHHH-hhccchhhh
Confidence 2334777777777777765 445554544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=136.68 Aligned_cols=185 Identities=16% Similarity=0.139 Sum_probs=154.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhccc-chhHHHHHH
Q 007816 1 MLLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFL-SRFATCLIF 79 (588)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~-GRr~~i~i~ 79 (588)
||+++|.+|.+++.+.+-.+.-|++..+.+.|+.+..|+|..++++..+.|..+...|.+++||++||+| |||...-+.
T Consensus 247 YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i 326 (448)
T COG2271 247 YVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALI 326 (448)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999998 888765433
Q ss_pred HHH-HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhH
Q 007816 80 GTL-EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASY 158 (588)
Q Consensus 80 ~~i-~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~ 158 (588)
+.+ ..++.+..-+++ ..++.+..+..++.|+-+-+-...+-....|..|++. -|++
T Consensus 327 ~~~~i~~~~~~~w~~~-----------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA 383 (448)
T COG2271 327 FMLLITASLVLYWLAP-----------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTA 383 (448)
T ss_pred HHHHHHHHHHHHHcCC-----------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccch
Confidence 333 333333333443 2367788888888998888888888888999999777 8899
Q ss_pred HHHHHHHHHH-HHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007816 159 FNFYLLATTV-AAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGK 208 (588)
Q Consensus 159 ~~~~~~~~~i-G~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~ 208 (588)
.+...++..+ |...+....+++.+.+||...|.+-.+..+++.+++.+..
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9998888877 9999988889998889999999888777777766655543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.1e-13 Score=142.74 Aligned_cols=180 Identities=14% Similarity=0.110 Sum_probs=141.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
+++++.+|.+.+..++....++++..+++.|+++.+|+|..++++..+.+.++..++.+++|+++|| +|||+.+.+...
T Consensus 254 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~ 332 (467)
T PRK09556 254 VLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIA 332 (467)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHH
Confidence 3678889999999999999999999999999999999999999999999999999999999999999 899998776655
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
+..++..+..+.. ..+....++.+++.|++..........+..|.+|++. ||++.++
T Consensus 333 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi 389 (467)
T PRK09556 333 LALIIFTLGVYQH-----------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGI 389 (467)
T ss_pred HHHHHHHHHHHHh-----------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHH
Confidence 5554433333322 1134456677888886544433334467779999877 9999999
Q ss_pred HHHHHHH-HHHHHhhhhheecc------------ccchhHHHHHHHHHHHHHHHHHH
Q 007816 162 YLLATTV-AAVIGVTGIVYVFT------------EKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 162 ~~~~~~i-G~~ig~~~~~~i~~------------~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
.....++ |..++|.+.|++.+ ..+|+..|.+..+..+++.+..+
T Consensus 390 ~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 390 KGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 9988886 77899999999887 56899999887776666655444
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.7e-13 Score=137.55 Aligned_cols=174 Identities=17% Similarity=0.111 Sum_probs=146.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
++++.+|.+....++..+....+....++|. +++|.++.+.+.+.+.+.++..++.++.|++.|| +|||+.+.++.++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~ 279 (377)
T TIGR00890 202 LRTPQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGI 279 (377)
T ss_pred HcCccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHH
Confidence 4677788888887877777776766666664 5688999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.++..+.++. +...+++..++.|++.|...+..+.+++|.+|+++ |++.+++.
T Consensus 280 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~ 336 (377)
T TIGR00890 280 SAVGMAAMLFIPML-----------------NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFL 336 (377)
T ss_pred HHHHHHHHHHcccc-----------------hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHH
Confidence 98888877665421 22345567788999999999999999999999887 99999999
Q ss_pred HHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHH
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGL 201 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~ 201 (588)
+...++|..++|.+.+++.++.||++.|.+.+++.+++.
T Consensus 337 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 337 YTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 999999999999999999988999999998877655543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=136.24 Aligned_cols=174 Identities=16% Similarity=0.076 Sum_probs=136.8
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
+..+......++....++.....++.|+++++|+++.+.+++.+...++..++.+++|+++|| +|||+.+..+.+...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~~ 294 (393)
T PRK15011 216 RDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGVC 294 (393)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHH
Confidence 444444444444444555556678889999999999999999888888888899999999999 8999988877666555
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLA 165 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~ 165 (588)
.......+. +.+.+++.+++.+++.|...+..+++..|.+|+ + |++.+++++..
T Consensus 295 ~~~~~~~~~-------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~~~ 348 (393)
T PRK15011 295 FYAGMLMAH-------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYTNT 348 (393)
T ss_pred HHHHHHHHh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHHHH
Confidence 444333332 455677889999998888888888899999873 4 78999999888
Q ss_pred HHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHh
Q 007816 166 TTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 166 ~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
.++|..+|+.++|++.+.++|+..|.+..++.++..++.+.
T Consensus 349 ~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 349 SRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998889999999888777666665543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=9e-13 Score=139.61 Aligned_cols=185 Identities=11% Similarity=-0.007 Sum_probs=146.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCC--------hhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFD--------LAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFA 74 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--------~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~ 74 (588)
+++|.++...+..++............+.|+++ .|.+ ..+.+.+.++..++..++.++.|+++|| +|||+
T Consensus 205 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~ 282 (418)
T TIGR00889 205 FKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKK 282 (418)
T ss_pred hcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHH
Confidence 466667777777777666665666667777754 4433 3566899999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhh
Q 007816 75 TCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKA 154 (588)
Q Consensus 75 ~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~ 154 (588)
++.++.++..++.++...+... ..+.+.+++.+++.|++.+...+..+.+++|.+|+++
T Consensus 283 ~l~~~~~~~~v~~~l~~~~~~~---------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------ 341 (418)
T TIGR00889 283 VMLLSLVAWALRFGFFAYGDPE---------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------ 341 (418)
T ss_pred HHHHHHHHHHHHHHHHHHcCcc---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence 9999999998887777664211 0134567889999999999999999999999999777
Q ss_pred hhhHHHHHH-HHHHHHHHHHhhhhheeccc------cchhHHHHHHHHHHHHHHHHHHhhccc
Q 007816 155 LASYFNFYL-LATTVAAVIGVTGIVYVFTE------KSWWLGFLVSSVANFIGLIALAAGKCL 210 (588)
Q Consensus 155 Rg~~~~~~~-~~~~iG~~ig~~~~~~i~~~------~~w~~~f~i~~~~~~~~~~~~~~~~~~ 210 (588)
|++.+++.+ ....+|..+||.++|++.++ +||+..|.+.+++.+++.+++++..++
T Consensus 342 ~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 342 RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999997 56789999999999998775 579999998888766666665555543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-12 Score=131.07 Aligned_cols=173 Identities=19% Similarity=0.203 Sum_probs=157.6
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhH-HHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFA-TCLIFGTLEV 84 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~-~i~i~~~i~~ 84 (588)
|.++.+.+..++............+.++++.+|.++.+.+++.+...++..++.++.|++.|| +|||+ .+.++..+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 253 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAA 253 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHH
Confidence 567888888899999999999999999998889999999999999999999999999999999 89999 9999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 85 LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 85 ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
++.++..... +.+.+++..++.|++.+...+....++.|..|+++ |++.++.+..
T Consensus 254 i~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 308 (352)
T cd06174 254 LGLLLLALAP-------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNT 308 (352)
T ss_pred HHHHHHHHhc-------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHH
Confidence 9988888765 45678899999999999999999999999999877 9999999999
Q ss_pred HHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHH
Q 007816 165 ATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIAL 204 (588)
Q Consensus 165 ~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 204 (588)
..++|..+++.+.+++.+..+|+..|.+..+..++..++.
T Consensus 309 ~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 309 FGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999988999999999888876666544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-12 Score=132.02 Aligned_cols=176 Identities=14% Similarity=0.022 Sum_probs=141.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|.++.+....++...........++.|+++++|.++.+.+++.+...+...++.+++|++.|| +|||+.+.++.++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~ 274 (375)
T TIGR00899 196 LASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALA 274 (375)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHH
Confidence 356667766666666555555566677889889999999999999888877788889999999999 8999999888776
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.++....+ +.+.+++.+++.|++.|...+....+..|..|+ + |++.++++
T Consensus 275 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~ 328 (375)
T TIGR00899 275 GVAFYTGLAADN-------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLY 328 (375)
T ss_pred HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHH
Confidence 555544444433 455677889999999999889888999998874 3 66999999
Q ss_pred HHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHH
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
+...++|..++|.++|++.+..+|+..|++.++..+++.++..
T Consensus 329 ~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 329 TNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998888999999988887666666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=115.52 Aligned_cols=133 Identities=15% Similarity=0.177 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHH
Q 007816 48 LTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSF 127 (588)
Q Consensus 48 ~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi 127 (588)
.+.+.++..++.++.|++.|| +|||+.+..+..+..++.++...+. +.+.+.+.+++.|+
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~ 63 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSS-------------------NITVLIIARFLQGF 63 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHH
Confidence 345677889999999999999 8999999999999999888877764 55678889999999
Q ss_pred hccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHh
Q 007816 128 GCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 128 G~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
+.+...+....++.|.+|+++ |++.+++.+...++|..+++.+.+++.+..+|++.|.+.....++..+....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 64 GAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred HHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999887 9999999999999999999999999988889999999887776655555444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.1e-12 Score=131.23 Aligned_cols=173 Identities=18% Similarity=0.117 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 87 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~ 87 (588)
+|.......+..+++..+.++++.|+.+ .|.+ +.++..+.+.++..++.++.|++.|| +|||+.+.++..+..++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~ 293 (399)
T PRK05122 218 VWPYGMGLALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGL 293 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHH
Confidence 3444444445566677777778888764 4553 45667778888889999999999999 899999999988888888
Q ss_pred HHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHH
Q 007816 88 VMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATT 167 (588)
Q Consensus 88 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~ 167 (588)
++..+.+ +.+.+++++++.|+|.+...+.......|..|+++ |++.+++++...+
T Consensus 294 ~~~~~~~-------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 348 (399)
T PRK05122 294 LLLWLAP-------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLD 348 (399)
T ss_pred HHHHHhc-------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHH
Confidence 7777654 44567788999999999999988888889888777 9999999999999
Q ss_pred HHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 168 VAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 168 iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
+|..+++.+.|++.+..||+..|.+.+...+++.++.+...+
T Consensus 349 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 349 LSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999988889999999888776666665554433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=129.24 Aligned_cols=172 Identities=10% Similarity=-0.026 Sum_probs=149.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++++|.+|..++..++...+.....+..++|+++ +|.+..+.|.+.+...++..++.+++|++.|| +|+|+++.++.+
T Consensus 201 ~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~ 278 (382)
T TIGR00902 201 LLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAI 278 (382)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHH
Confidence 3678889999999999899999999999999965 89999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
...++.++.++++ +.+.+++..+++|++.|...+....|+.+. |+++ |++..++
T Consensus 279 ~~~~~~~~~~~~~-------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~ 332 (382)
T TIGR00902 279 ACVGRWAIIGAIE-------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQAL 332 (382)
T ss_pred HHHHHHHHHHhHh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHH
Confidence 9999999888776 566788899999999999999999999988 7666 8888888
Q ss_pred HH-HHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHH
Q 007816 162 YL-LATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLI 202 (588)
Q Consensus 162 ~~-~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 202 (588)
+. ....+|..+|+.++|++.++.++ ..|++.+...++..+
T Consensus 333 ~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 333 YNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 76 56789999999999999998886 556665555544443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=128.06 Aligned_cols=179 Identities=8% Similarity=-0.109 Sum_probs=143.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|.+|..+...++.....++..+.+++|+++.+|.+..+.+++.+.+.++..++.++.|+++|| +|||+. .++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~-~~~~~~ 279 (390)
T PRK03545 202 FRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFL-LIAIAL 279 (390)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHH-HHHHHH
Confidence 466777777777777777778788888889988899999999999999999999999999999999 898865 445444
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++..+..... .+.+.+++..++.|++.+...+...+.+.|..| ++ |+++++++
T Consensus 280 ~~~~~~~l~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~ 334 (390)
T PRK03545 280 LLVCLLLLLPAA------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALF 334 (390)
T ss_pred HHHHHHHHHHHh------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHH
Confidence 444443332221 145567788889999998888888888888765 45 88999999
Q ss_pred HHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGK 208 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~ 208 (588)
....++|..+|+.++|++.++.+++..|++.+.+.+++.++.....
T Consensus 335 ~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 335 SGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 9889999999999999999999999999998888777666655433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.3e-12 Score=135.33 Aligned_cols=178 Identities=16% Similarity=0.091 Sum_probs=144.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcc-cchhHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTF-LSRFATCLIFGT 81 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~-~GRr~~i~i~~~ 81 (588)
+++|++|..+...++..+++++....++.|+++ +|++..+++++.++..++..++.+++|+++||. +++|+...++..
T Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 316 (455)
T TIGR00892 238 FTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFA 316 (455)
T ss_pred hcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHH
Confidence 567888988888888888888888889999865 799999999999999999999999999999972 234444444333
Q ss_pred HH--HHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 82 LE--VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 82 i~--~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
.. .++.++.+.+. +.+.+++.+++.|++.|...+...+++.|.+|+++ +++.+
T Consensus 317 ~~~~~l~~ll~~~~~-------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~ 371 (455)
T TIGR00892 317 LLFNGLTHLLCALAG-------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAV 371 (455)
T ss_pred HHHHHHHHHHHHHhc-------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHH
Confidence 33 33334444443 55678889999999999999999999999999877 99999
Q ss_pred HHHHHHHHHHHHHHhhhhheecccc-chhHHHHHHHHHHHHHHHHHHh
Q 007816 160 NFYLLATTVAAVIGVTGIVYVFTEK-SWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 160 ~~~~~~~~iG~~ig~~~~~~i~~~~-~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
++++...++|..+||.++|++.+.. +|+..|++.+++.+++.+...+
T Consensus 372 g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~ 419 (455)
T TIGR00892 372 GLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAI 419 (455)
T ss_pred hHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999998876 5999999988876666554443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-12 Score=139.02 Aligned_cols=134 Identities=14% Similarity=0.033 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHH
Q 007816 46 NTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLY 125 (588)
Q Consensus 46 ~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~ 125 (588)
+...+..++..++.+++|+++|| +|||+++.++.++..++.++.++++ +...+++.+++.
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~-------------------s~~~ll~~~~l~ 658 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN-------------------SESAMIALLCLF 658 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc-------------------cHHHHHHHHHHH
Confidence 33455678889999999999999 9999999999999999988888775 234577778899
Q ss_pred HHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHH
Q 007816 126 SFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 126 GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
|++.++..++..++++|++|++. |++.+++.+....+|.++||.+++++... +...+|++.++..+++.++.+
T Consensus 659 g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~ 731 (742)
T TIGR01299 659 GGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL 731 (742)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH
Confidence 99888899999999999999877 99999999999999999999999877653 456788877777666555444
Q ss_pred h
Q 007816 206 A 206 (588)
Q Consensus 206 ~ 206 (588)
.
T Consensus 732 ~ 732 (742)
T TIGR01299 732 K 732 (742)
T ss_pred h
Confidence 3
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.9e-12 Score=133.69 Aligned_cols=177 Identities=11% Similarity=0.004 Sum_probs=140.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhcc---CCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEM---HFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIF 79 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~ 79 (588)
+++|.+|.+.+..++....+......++.|+.+.+ +.+..+.+.+.++..++..++.+++|++.|| +|||+.+.++
T Consensus 220 l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~ 298 (420)
T PRK09528 220 LKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLA 298 (420)
T ss_pred ccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHH
Confidence 55666776666555555555555556677776543 5666788999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
.++..++.++.++++ +.+.+++.+++.|++.+...+....++.|.+|++. |+...
T Consensus 299 ~~l~~~~~~l~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~ 353 (420)
T PRK09528 299 GTIMAVRIIGSGFAT-------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIY 353 (420)
T ss_pred HHHHHHHHHHHHhcc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeee
Confidence 999999888887765 45578889999999999988888899999999766 66665
Q ss_pred HH-HHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHH
Q 007816 160 NF-YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 160 ~~-~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
+. +....++|..+++.+.|++.+..||+..|.+.+++.++..++.+
T Consensus 354 ~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 354 LVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 54 55678899999999999999989999999987776554444433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=129.77 Aligned_cols=172 Identities=11% Similarity=0.096 Sum_probs=140.9
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHH
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 84 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ 84 (588)
++.+|.+.+..++.....+++.++++.|+++.+|+|..+.+.+.+.+.++..++.+++|+++|| +|||+.+.....+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~ 282 (394)
T PRK03699 204 GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLAL 282 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 4567777788888888888999999999999999999999999999999999999999999999 899999988877766
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 85 LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 85 ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
++..+....+ +...+.+..++.|++.+...+...++..|..|. + +++..++...
T Consensus 283 ~~~~~~~~~~-------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~g~~~~ 336 (394)
T PRK03699 283 VLMYLFVNTD-------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-A------SPKLVNFILT 336 (394)
T ss_pred HHHHHHHHcC-------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C------CHHHHHHHHH
Confidence 6555554443 333456677888998888888888888887753 3 4566778888
Q ss_pred HHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHH
Q 007816 165 ATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIA 203 (588)
Q Consensus 165 ~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 203 (588)
+.++|..++|.+.|++.+..||+..|++..++.+++.+.
T Consensus 337 ~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 337 CGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 889999999999999998899999998877765555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-09 Score=106.92 Aligned_cols=378 Identities=13% Similarity=0.034 Sum_probs=211.1
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccc-----hhH-HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 007816 34 KNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLS-----RFA-TCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKS 107 (588)
Q Consensus 34 ~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~G-----Rr~-~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~ 107 (588)
-.+++....-.+.+++...+.+. ..+..|+.+|+ .+ ||. -+..|..++..|..+.+++.-.- .. .-..+
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~-~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l--~~-~~~~~ 81 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDT-HPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLL--AE-SGQQS 81 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH-HHHHhcccccc-CcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHH--cc-ccccc
Confidence 45788888888888888776654 57788999999 56 554 45556666777776666553110 00 00000
Q ss_pred CcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccch-
Q 007816 108 SCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSW- 186 (588)
Q Consensus 108 ~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w- 186 (588)
+-+.........+.-.+.|+|.+...++..++.+|..|+++ |+++.++.|.+..+|..++..+.+.+-+.++-
T Consensus 82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~ 155 (403)
T PF03209_consen 82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE 155 (403)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 00112233455666778999999999999999999999988 99999999999999999999888877666653
Q ss_pred hHHHHHHHHH---HHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhcccccccCC
Q 007816 187 WLGFLVSSVA---NFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTWERIPH 263 (588)
Q Consensus 187 ~~~f~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~ 263 (588)
|+.-.++... ..+..+..+-..+|.....+ .+ +
T Consensus 156 rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~----------------------~~----------------------~ 191 (403)
T PF03209_consen 156 RLIQVIQGVALIALLLNLIALWGQEPRRSRRAA----------------------AA----------------------E 191 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccccc----------------------CC----------------------C
Confidence 3332333222 22222222211111110000 00 0
Q ss_pred CcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHhhhcCCCCCcccccCC
Q 007816 264 ANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTS 343 (588)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (588)
.++.++.+ .|+.+..+ . +.++++..+.+ ....+....-..-+|--+..+++.. .+.
T Consensus 192 ~~~~~f~~-------------a~~~~~~~-~-~a~~f~~fl~l---~t~a~~~QD~iLEPygg~Vfgmsv~------eTT 247 (403)
T PF03209_consen 192 RPRPPFRE-------------AWRQVWAS-P-QARRFFVFLFL---GTLAFFMQDVILEPYGGEVFGMSVG------ETT 247 (403)
T ss_pred CCCccHHH-------------HHHHHHhC-C-ChhHHHHHHHH---HHHHHHhhHHHcCCchhHHcCCCHH------HHH
Confidence 00000111 01111100 0 01222221111 1111111011111111111222211 122
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHH
Q 007816 344 SIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLS 423 (588)
Q Consensus 344 ~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (588)
.++.....+++++..+..+... ||. ++.+.-.+|+.++++++.+...... ..+.+.+.
T Consensus 248 ~Lta~~~~G~L~G~~~~g~~l~---~~~-------~~~~~a~~G~~~~~~~f~lii~a~~------------~~~~~~~~ 305 (403)
T PF03209_consen 248 RLTAFWGGGTLLGMLLAGFLLS---RRL-------GKKRTAALGCLLGALAFALIILAGP------------LGSPWLFR 305 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCC-------CchHHHHHHHHHHHHHHHHHHHHHh------------cccchHHH
Confidence 3334445556555555555422 222 1223345677777777766554320 12345666
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcch
Q 007816 424 FQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNV 503 (588)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 503 (588)
...+++|++.+.......+.+.+..+.+..|..+|.|...+.++..++....+.+.|.... +..+ -....|
T Consensus 306 ~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~-------~~~~--~~~~aY 376 (403)
T PF03209_consen 306 PGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRA-------LFGN--SPALAY 376 (403)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccC--CcchHH
Confidence 7778999999999999999999999999999999999999999999998888887776542 1110 011244
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007816 504 NLFYWFLAIVSVLNLVLY 521 (588)
Q Consensus 504 ~~~f~~~a~~~~~~~v~~ 521 (588)
.-+|.+=+++.++++++.
T Consensus 377 ~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 377 GVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555655555555554443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-11 Score=126.70 Aligned_cols=180 Identities=16% Similarity=0.064 Sum_probs=137.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHH-HHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFAT-CLIFGT 81 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~-i~i~~~ 81 (588)
+++|.++.++...++.....+.+.+..+.|+++.+|.+..+.+++.+...++..++.+++|++.|| +|||+. +.....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~ 290 (399)
T TIGR00893 212 LKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARK 290 (399)
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHH
Confidence 567789999999999999999999999999999999999999999999999999999999999999 899962 111112
Q ss_pred HHHHHHH---HHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhH
Q 007816 82 LEVLALV---MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASY 158 (588)
Q Consensus 82 i~~ig~~---l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~ 158 (588)
...++.+ +....... ..+.+..+....+.+++.+ ..+...++++|.+|+++ |++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~ 348 (399)
T TIGR00893 291 TAIIAGLVLSLLMFATNY---------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLT 348 (399)
T ss_pred HHHHHHHHHHHHHHHhcc---------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHH
Confidence 2222211 11111110 0123333444444444444 78999999999999887 9999
Q ss_pred HHHHHHHHHHHHHHHhhhhheeccccc-hhHHHHHHHHHHHHHHHHHH
Q 007816 159 FNFYLLATTVAAVIGVTGIVYVFTEKS-WWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 159 ~~~~~~~~~iG~~ig~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~ 205 (588)
+++.....++|..++|.+.+++.+..+ |+..|.+.+++.+++.++.+
T Consensus 349 ~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 349 GGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888 99999888777666555443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=127.19 Aligned_cols=173 Identities=15% Similarity=0.087 Sum_probs=135.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 83 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~ 83 (588)
++|.++..+...++..+.+....+.++.|+++ .|.+..+.+.+.+.+.++..++.++.|++.|| +|||+.+.++..+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~ 275 (381)
T PRK03633 198 KLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVV 275 (381)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHH
Confidence 45556655444555555556666777778765 69999999999999999999999999999999 89999999888887
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007816 84 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 163 (588)
Q Consensus 84 ~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~ 163 (588)
.++.++.. .. ...+..+++.|++.+...|...+++.|..|+++ ++...+.+.
T Consensus 276 ~~~~~~~~-~~---------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~ 327 (381)
T PRK03633 276 ILGSIAML-SQ---------------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALL 327 (381)
T ss_pred HHHHHHHh-hh---------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHH
Confidence 77765443 11 124456788888888888999999999988665 677777777
Q ss_pred HHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHh
Q 007816 164 LATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 164 ~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
...++|.++||.++|++.++.+|++.|.+.+.+.++..+.++.
T Consensus 328 ~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 328 LSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999899999999988776666554443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-11 Score=126.40 Aligned_cols=181 Identities=12% Similarity=0.042 Sum_probs=139.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHH-HHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCL-IFG 80 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~-i~~ 80 (588)
++|+|.+|...+..++...++++..+..+.|++ ++|++..+.+.+.+.+.++..++.++.|+++|| +|||+.+. .+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~ 295 (402)
T TIGR00897 218 LFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGG 295 (402)
T ss_pred HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHH
Confidence 457888999888899999999999999988875 589999999999999999999999999999999 89998764 333
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 81 TLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 81 ~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
....++.+......... ..+.+.+++..++.|++.+...+. .....|..| ++ |++.++
T Consensus 296 l~~~~~~~~l~~~~~~~--------------~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g~~~g 353 (402)
T TIGR00897 296 VGCGIFTLALYYIPQHF--------------GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KGAAMS 353 (402)
T ss_pred HHHHHHHHHHHHHHHcc--------------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hHHHHH
Confidence 33334333333221100 114456677888889888876554 455667544 45 999999
Q ss_pred HHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHh
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
+.+...++|..++|.+++++.+..||+..|++.+++.++..++..+
T Consensus 354 ~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 354 VLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998889999999888776666555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-11 Score=129.54 Aligned_cols=180 Identities=11% Similarity=-0.056 Sum_probs=144.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|.++......++... ..++....+.|+++.+|++..+.+++.+.+.++..++.++.|++.|| .++++.+..+.++
T Consensus 221 ~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~ 298 (417)
T PRK10489 221 LASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLG 298 (417)
T ss_pred HcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHH
Confidence 455666666555555433 45667777888888899999999999999999999999999999999 7888888888888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.++..+.+ +.+...++.++.|++.+...+...+++.|..|++. |++.++++
T Consensus 299 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 353 (417)
T PRK10489 299 SFLAVGLFGLMP-------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLW 353 (417)
T ss_pred HHHHHHHHHccc-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHH
Confidence 888777666554 44567788889999999888888899999999776 99999999
Q ss_pred HHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
+...++|..+|+.++|++.+..+++..+.+.+...++..++.....+
T Consensus 354 ~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 354 TAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999889888887776665444444444333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-11 Score=127.58 Aligned_cols=177 Identities=10% Similarity=-0.019 Sum_probs=137.5
Q ss_pred CcchHHH-HHHHHHHHHHHHHHhHHHHHHHchhccCCChh---hHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHH
Q 007816 4 TTCNFFV-YVVFSALENMGFIANGISMVLYFKNEMHFDLA---GASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIF 79 (588)
Q Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~ 79 (588)
+++.++. .....++..+....+.+.++.|+.+..+.... ..+.+.+++.++..++.++.|++.|| +|||+.+.++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~ 294 (408)
T PRK09874 216 KNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITA 294 (408)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHH
Confidence 3444443 33334444455555666677777765443221 34566666778888999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
..+..++.+.....+ +.+.+++.+++.|++.|...+...+++.+..|+++ ||+.+
T Consensus 295 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 349 (408)
T PRK09874 295 LIFSVLLLIPMSFVQ-------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIF 349 (408)
T ss_pred HHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeee
Confidence 888877777666554 44567889999999999999999999999998877 99999
Q ss_pred HHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHh
Q 007816 160 NFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 160 ~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
++++...++|..+||.++|++.+..+|+..|.+.+++.++..++.+.
T Consensus 350 ~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 350 SYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887776665544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-11 Score=128.88 Aligned_cols=180 Identities=19% Similarity=0.127 Sum_probs=128.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhccc--ch-hHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFL--SR-FATCLIF 79 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~--GR-r~~i~i~ 79 (588)
++++.+|.+.+..++..+.++++.+.++.|+++++|++..+++...+.+.++..++.+++|+++|| + +| |+.....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~ 318 (434)
T PRK11663 240 LLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIF 318 (434)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHH
Confidence 456778888888888888888888999999999999999999999999999999999999999999 7 33 3332222
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
.+...++.+....... . +.....+..+..|++.....+....+.+|.+|+++ |++.+
T Consensus 319 ~~~~~~~~~~~~~~~~-~----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 375 (434)
T PRK11663 319 AAGILLSVGSLWLMPF-A----------------SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAAT 375 (434)
T ss_pred HHHHHHHHHHHHHccc-c----------------cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHH
Confidence 2111222211111111 0 22233333344444332222334567789998777 99999
Q ss_pred HHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHh
Q 007816 160 NFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 160 ~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
++.+...++|..++|.+.|++.+..||+..|.+.+++.++..+...+
T Consensus 376 g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 376 GFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999899999998888776666554443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=131.00 Aligned_cols=179 Identities=15% Similarity=0.088 Sum_probs=131.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhccc--chhHHH-HHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFL--SRFATC-LIF 79 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~--GRr~~i-~i~ 79 (588)
++++.+|..++..++.....+++...++.|+++..|++..+++++...+.++..++.+++|+++|| + |||+.. ...
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~ 328 (452)
T PRK11273 250 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFF 328 (452)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHH
Confidence 467889999999999888889999999999999999999999999999999999999999999999 7 555432 222
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
..+..++.++..+... .+.+..++..++.|.+..........+..|.+|++. ||+.+
T Consensus 329 ~~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~ 385 (452)
T PRK11273 329 MTLVTIATIVYWLNPA-----------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAA 385 (452)
T ss_pred HHHHHHHHHHHHHhcc-----------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHH
Confidence 2333333333322210 123334445555555433333334456789999887 99999
Q ss_pred HHHHHHHHHHHH-HHhhhhheeccccchhHHHHHHHHHHHHHHHHHH
Q 007816 160 NFYLLATTVAAV-IGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 160 ~~~~~~~~iG~~-ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
++.+...++|.. ++|.+.|++.++.||+..|.+.++..+++.+...
T Consensus 386 g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 386 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999988888865 4799999999989999999988877666655443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=114.95 Aligned_cols=156 Identities=13% Similarity=0.234 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHhHH--HHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIANGI--SMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
+..+.++.++..=+|+---. .+..+++.+.+.+.++.-++-+.|+.-..+.++++||+.||.+|-|..-++-+++..+
T Consensus 43 ~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~ 122 (459)
T KOG4686|consen 43 FMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFL 122 (459)
T ss_pred HHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHH
Confidence 55555555554333332222 3456788888888889999999999999999999999999999999988888888889
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLA 165 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~ 165 (588)
|-++.+..-- ....|++.+||++.|+|.-....+...|..-.+..++ .+.++++....
T Consensus 123 GqliFa~Ggi----------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSv 180 (459)
T KOG4686|consen 123 GQLIFAAGGI----------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSV 180 (459)
T ss_pred HHHHHHhchH----------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHH
Confidence 9988775531 2378999999999999999999999999999999888 99999999888
Q ss_pred HHHHHHHHhhhhheeccccc
Q 007816 166 TTVAAVIGVTGIVYVFTEKS 185 (588)
Q Consensus 166 ~~iG~~ig~~~~~~i~~~~~ 185 (588)
..+|+.+-..+.+++.+..+
T Consensus 181 AR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 181 ARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred HHhhceeeeeecHHHHHHHH
Confidence 88888877666666655433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=129.57 Aligned_cols=167 Identities=14% Similarity=0.113 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHH
Q 007816 7 NFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 86 (588)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig 86 (588)
.++......++....++.+.+.++.|+++++|.+..+.+.+.....++..++.+++|+++|| +|||+.+.++..+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~ 298 (394)
T TIGR00883 220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALL 298 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHH
Confidence 37888888888888999999999999999999999999999999999999999999999999 89999888666655544
Q ss_pred HH-HH-HHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH-H
Q 007816 87 LV-ML-TIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY-L 163 (588)
Q Consensus 87 ~~-l~-~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~-~ 163 (588)
.+ +. .... ..+.+.+++..++.|++.+...+...++++|.+|+++ |++.+++. .
T Consensus 299 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~ 355 (394)
T TIGR00883 299 AVPLLMALLD-----------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAYN 355 (394)
T ss_pred HHHHHHHHhc-----------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehhH
Confidence 32 22 2221 1144567778899999999999999999999999887 88888874 4
Q ss_pred HHHHHHHHHHhhhhheeccccc-hhHHHHHHHHHH
Q 007816 164 LATTVAAVIGVTGIVYVFTEKS-WWLGFLVSSVAN 197 (588)
Q Consensus 164 ~~~~iG~~ig~~~~~~i~~~~~-w~~~f~i~~~~~ 197 (588)
+...+|..++|.++|++.++.+ |+..++......
T Consensus 356 ~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 356 LAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred hHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 5567899999999999988777 887776665543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-11 Score=126.43 Aligned_cols=180 Identities=11% Similarity=-0.034 Sum_probs=132.7
Q ss_pred cchHHHH-HHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHH
Q 007816 5 TCNFFVY-VVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 83 (588)
Q Consensus 5 ~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~ 83 (588)
++..|.. ....++..+++|.+.++++.|+++.+|++......+.....+...++.++.|+++|| +|||+++.++.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~ 326 (438)
T PRK09952 248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIG 326 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHH
Confidence 3344444 346777788999999999999999999998776666666667778889999999999 89999999887766
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007816 84 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 163 (588)
Q Consensus 84 ~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~ 163 (588)
.++.+........ ......+++..++.+++.+...+..+++++|.+|++. |+...++.+
T Consensus 327 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~~ 385 (438)
T PRK09952 327 TLSAFPFFMALEA---------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVGY 385 (438)
T ss_pred HHHHHHHHHHHHc---------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHHH
Confidence 5554433332100 0123344556677789999989999999999999877 888888855
Q ss_pred HH-HHHHHHHHhhhhheeccc--cchhHHHHHHHHHHHHHHHHHHh
Q 007816 164 LA-TTVAAVIGVTGIVYVFTE--KSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 164 ~~-~~iG~~ig~~~~~~i~~~--~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
.. ..+|..++|.+.+++.+. .+|+.++.+.++..++..+..+.
T Consensus 386 ~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 386 QVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 44 458889999999988653 35888887776666666555443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-11 Score=124.69 Aligned_cols=180 Identities=8% Similarity=-0.026 Sum_probs=143.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
++.+..|.+.+..++..++++++.+.++.|+.+ +|.+..+++.+.+.+.++..++.++.|+++|| +|||+.+.++..+
T Consensus 202 l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l 279 (393)
T PRK09705 202 VFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVL 279 (393)
T ss_pred ccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHH
Confidence 456678888888888889999999999999976 79999999999999999999999999999999 8999999998888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCC-CCchhhhhhhhHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDE-NDPKGAKALASYFNF 161 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~-~~~~~~~~Rg~~~~~ 161 (588)
..++.++....+. +...+. -++.|+|.|...|.......|..++ ++ |++.+++
T Consensus 280 ~~~~~~~~~~~~~------------------~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g~ 333 (393)
T PRK09705 280 QLVGFCGFIWLPL------------------QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVAF 333 (393)
T ss_pred HHHHHHHHHHccc------------------hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHHH
Confidence 7777765543321 111122 2467888888888888777888763 33 8999999
Q ss_pred HHHHHHHHHHHHhhhhheeccccc-hhHHHHHHHHHHHHHHHHHHhhccc
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKS-WWLGFLVSSVANFIGLIALAAGKCL 210 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~~~~~~ 210 (588)
.+...+++..++|.+.|++.+..| |+..|.+.+...++..+......|+
T Consensus 334 ~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 334 MQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999988765 8888888777665555554444443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.5e-11 Score=123.30 Aligned_cols=184 Identities=12% Similarity=0.032 Sum_probs=143.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchh-ccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccch-hHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKN-EMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSR-FATCLIFGT 81 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GR-r~~i~i~~~ 81 (588)
++|.+|...+.+++..+.+..+.+.+-+|+++ |.+-+.+.-|+++++..++..+++|+.|+-..| .|+ |+=++.|.+
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pli~s~i 110 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPLIVSFL 110 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCHHHHHH
Confidence 57899999999999999999999999999986 788889999999999999999999999999999 774 667788999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
+.++|.++.......+ ....+.++++|++.|+|.|. .+..-.|+++...+++ |.|+++.
T Consensus 111 i~~~g~llY~~l~~~~--------------~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~d------R~rA~a~ 169 (488)
T KOG2325|consen 111 IAIIGNLLYLALAYVP--------------NGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVED------RPRAFAA 169 (488)
T ss_pred HHHHHHHHHHHHHhcc--------------cchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccc------hHHHHHH
Confidence 9999999994443333 22678899999999999764 5678899999999888 8888888
Q ss_pred HHHHHHHHHHHHhhhhhee----ccc------c---chhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 162 YLLATTVAAVIGVTGIVYV----FTE------K---SWWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i----~~~------~---~w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
...+..+|..+||.+...+ ... . .+..+-|+.++..++..+++.+..+
T Consensus 170 ~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 170 TSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK 230 (488)
T ss_pred hhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence 7777677777777654322 111 1 1345666666665555555444443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.8e-11 Score=123.65 Aligned_cols=171 Identities=11% Similarity=-0.079 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 87 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~ 87 (588)
.+.+....++....++.+..+++.|+++ .|++..+.+.+.+.+.++..++.++.|+++|| +|||+.+.++.+...++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~ 299 (406)
T PRK11551 222 TLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASL 299 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH
Confidence 3444555566666777788888888765 79999999999999999999999999999999 899999988766666665
Q ss_pred HHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHH
Q 007816 88 VMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATT 167 (588)
Q Consensus 88 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~ 167 (588)
++..... +.+.+++.-++.|++.+...+..+++..|.+|+++ |++.+++.+....
T Consensus 300 ~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~ 354 (406)
T PRK11551 300 AALAAAP-------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGR 354 (406)
T ss_pred HHHHhcC-------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhh
Confidence 5554443 33456667788888888888999999999999888 9999999999999
Q ss_pred HHHHHHhhhhheecccc-chhHHHHHHHHHHHHHHHHHH
Q 007816 168 VAAVIGVTGIVYVFTEK-SWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 168 iG~~ig~~~~~~i~~~~-~w~~~f~i~~~~~~~~~~~~~ 205 (588)
+|..+||.+.|++.++. +|...+++..++.++..+..+
T Consensus 355 ~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 355 LGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987753 566666666655554444433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-11 Score=129.13 Aligned_cols=149 Identities=17% Similarity=0.122 Sum_probs=119.6
Q ss_pred HhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007816 24 ANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPD 103 (588)
Q Consensus 24 ~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~ 103 (588)
++...++.|+++++|++..+++++.+.+.++..++.+++|+++|| +|||+.+.++..+..++.++......
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 456678899989999999999999999999999999999999999 89999998887776666554433321
Q ss_pred CCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccc
Q 007816 104 CGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTE 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~ 183 (588)
.+.+.+.+..++.++......+..++++.|.+|+++ |++.+++++...++|..+||.++|++.+.
T Consensus 364 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~l~~~ 428 (496)
T PRK03893 364 ---------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGALIAQR 428 (496)
T ss_pred ---------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence 133444455555554444556788899999999877 99999999999999999999999999999
Q ss_pred cchhHHHHHHHHH
Q 007816 184 KSWWLGFLVSSVA 196 (588)
Q Consensus 184 ~~w~~~f~i~~~~ 196 (588)
.||+..+.+....
T Consensus 429 ~g~~~~~~~~~~~ 441 (496)
T PRK03893 429 LDLGTALASLSFS 441 (496)
T ss_pred CChHHHHHHHHHH
Confidence 9999877655443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-09 Score=117.42 Aligned_cols=199 Identities=13% Similarity=0.159 Sum_probs=155.4
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
+.|..++....+..-.+.+.+.....-+.+.++++..+.|++.+.+-++..+...+..+.+-| .-|-+.+-+|+++..+
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHH
Confidence 445555555555555555888889999999999999999999999999999999999999999 7888899999999999
Q ss_pred HHHHHHHhhcccc-------------CCC-------------CCCCC--CCcC--Cchh---HHHHHHHHHHHHHhcccc
Q 007816 86 ALVMLTIQAYSKN-------------LHP-------------PDCGK--SSCL--KGAI---AAYFYGSLYLYSFGCGGN 132 (588)
Q Consensus 86 g~~l~~~a~~~~~-------------~~~-------------~~~~~--~~~~--~~~~---~~~l~~~R~l~GiG~g~~ 132 (588)
|+++.++...+.. -.+ ..|.. ++|. +..+ +.+++++-++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 9999987622110 001 12211 2232 2222 447889999999999999
Q ss_pred ccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccc-------------------cchhHHHHHH
Q 007816 133 RGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTE-------------------KSWWLGFLVS 193 (588)
Q Consensus 133 ~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~-------------------~~w~~~f~i~ 193 (588)
.+...+|+-|-..+++ -...+++.+.+..+|+++|+.+|++.... ..|+..|++.
T Consensus 255 ~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~ 328 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLIC 328 (735)
T ss_pred ccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHH
Confidence 9999999999998777 67999999999999999999998865321 1389999999
Q ss_pred HHHHHHHHHHHHhhccce
Q 007816 194 SVANFIGLIALAAGKCLY 211 (588)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~ 211 (588)
..+.++..+.++++.++.
T Consensus 329 g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 329 GALLLFSAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHHHHHHHhCcccC
Confidence 988888877777665543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.6e-11 Score=124.40 Aligned_cols=162 Identities=20% Similarity=0.208 Sum_probs=132.7
Q ss_pred HHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhc
Q 007816 16 ALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAY 95 (588)
Q Consensus 16 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~ 95 (588)
++..+.+..+.+..+.|+++ .+++ +.+...+.+.++..++.++.|++.|| +||||.+.++..+..++.++..+.+
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~- 300 (392)
T PRK12382 226 ALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP- 300 (392)
T ss_pred HHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc-
Confidence 34445566666677777764 4554 35666677788888999999999999 8999999999998888887776654
Q ss_pred cccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhh
Q 007816 96 SKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVT 175 (588)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~ 175 (588)
+.+.+++++++.|++.+...+...+...|.+|+++ |++.+++++...++|..++|.
T Consensus 301 ------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~~ 356 (392)
T PRK12382 301 ------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSGP 356 (392)
T ss_pred ------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 44567788999999999999999999999998777 999999999999999999999
Q ss_pred hhheeccccchhHHHHHHHHHHHHHHHHHHh
Q 007816 176 GIVYVFTEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 176 ~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
+.+++.++.||+..|.+.+...++..++.+.
T Consensus 357 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 357 LAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999899999999988776666655443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=125.19 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=139.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHH-HHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLT-NFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~-~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++++.+|.++...++..++.+...+..++|+.+++|++..+.+++.. ...++..++.+++|++.|| +|||+.+.++.+
T Consensus 219 ~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~ 297 (491)
T PRK11010 219 FGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGI 297 (491)
T ss_pred HcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 34566777777777777777777888888988889999999999985 4567999999999999999 899998887776
Q ss_pred HHHHHHHHHHH-hhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 82 LEVLALVMLTI-QAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 82 i~~ig~~l~~~-a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
+..++.++... +.. . .+...+.+.-+++.++.|...+...++..+..+++. +++.++
T Consensus 298 l~~l~~l~~~~l~~~-~---------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~g 355 (491)
T PRK11010 298 LQGVSNAGYWLLSIT-D---------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFA 355 (491)
T ss_pred HHHHHHHHHHHHHhc-c---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHH
Confidence 66665543321 211 0 133344555666666666666777888889998877 788899
Q ss_pred HHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGK 208 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~ 208 (588)
+.+...++|..+++.+.|++.+..||+..|.+..+..+.+.++....+
T Consensus 356 l~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 356 LLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 998889999988888899999889999999988888777766655443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-10 Score=119.68 Aligned_cols=179 Identities=11% Similarity=0.014 Sum_probs=141.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++++|.+|..++...+.....+...+..+.|+.+++|+++.+.++......++..++.++.|+++|| +|||+.+.++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~ 289 (406)
T PRK15402 211 VLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLW 289 (406)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 3567778888887777777777777777888888999999999998888888899999999999999 899999999998
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
+..+|.++........ ..+.+.++++.++.|+|.+...+......... ++++ ||+..+.
T Consensus 290 ~~~~g~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~ 348 (406)
T PRK15402 290 PMVAGLLLAALATVIS--------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAA 348 (406)
T ss_pred HHHHHHHHHHHHHHcc--------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHH
Confidence 8888888777654211 12455678889999999998888776665443 3355 8999999
Q ss_pred HHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHH
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLI 202 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 202 (588)
+++...+|..+|+.+++.+.+..++....+...+..++...
T Consensus 349 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK15402 349 MGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLL 389 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999998777776555555544444433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.4e-11 Score=124.61 Aligned_cols=157 Identities=15% Similarity=0.081 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHH-
Q 007816 11 YVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVM- 89 (588)
Q Consensus 11 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l- 89 (588)
+.....+......++.+.++.|+++++|++..+.+++.+.+.++..++.++.|++.|| +|||+.+.++..+..+..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~ 321 (405)
T TIGR00891 243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPV 321 (405)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHH
Confidence 3444445555666777788899999999999999999999999999999999999999 89999998887665332222
Q ss_pred HHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHH
Q 007816 90 LTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVA 169 (588)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG 169 (588)
..... +.+.+.++.++.|+..+...+..+++++|.+|+++ |++.+++.+...++|
T Consensus 322 ~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g 376 (405)
T TIGR00891 322 FAIGA-------------------NVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNLG 376 (405)
T ss_pred HHhCC-------------------chHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHHH
Confidence 22211 44566777788888888888999999999999888 999999999999999
Q ss_pred HHHHhhhhheeccccc-hhHHHHHH
Q 007816 170 AVIGVTGIVYVFTEKS-WWLGFLVS 193 (588)
Q Consensus 170 ~~ig~~~~~~i~~~~~-w~~~f~i~ 193 (588)
..++|.+.|++.+..| |+..|...
T Consensus 377 ~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 377 GALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred HHHHHHHHHHHHHhccccchhHHhh
Confidence 9999999999998888 87666553
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.3e-10 Score=117.06 Aligned_cols=162 Identities=17% Similarity=0.093 Sum_probs=124.0
Q ss_pred HHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcc----cchhHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007816 28 SMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTF----LSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPD 103 (588)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~----~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~ 103 (588)
...+|+++++|+++.+.....+...+. +..-++.|.++|-+ +-||+-++++.++..++.+.+++.+...
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~------ 83 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE------ 83 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc------
Confidence 455688999999999999988877766 44556679999995 2467777778777766666666544211
Q ss_pred CCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccc
Q 007816 104 CGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTE 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~ 183 (588)
.+.....+.-++..+|......++-+++.|....+. . . ||...+..+....+|.+++..++|++.+.
T Consensus 84 ---------~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p-~--~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~ 150 (433)
T PF03092_consen 84 ---------SSAAIAVVLLFLASFGYAFADVAADALVVELARREP-E--S-RGDLQSFVWGVRSVGSLVGSLLSGPLLDS 150 (433)
T ss_pred ---------chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC-c--h-hHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 134456667788999999999999999999996443 2 2 88999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 184 KSWWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 184 ~~w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
.+++..|.+..++.++..+..++..+
T Consensus 151 ~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 151 FGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred CCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 99999999887775555544444443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-09 Score=107.75 Aligned_cols=134 Identities=10% Similarity=-0.001 Sum_probs=108.0
Q ss_pred HHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 007816 29 MVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSS 108 (588)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~ 108 (588)
...|.++.++ +...+-|...+|+..+....+.+-|+.|+ +|-|.+.+++++..++|+.+-..+.. + +.|+
T Consensus 67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~-p-~v~~------ 136 (480)
T KOG2563|consen 67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSL-P-FVPP------ 136 (480)
T ss_pred HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccC-c-cccc------
Confidence 3356777777 77778899999999999999999999999 89999999999999999999888752 1 1111
Q ss_pred cCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheec
Q 007816 109 CLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVF 181 (588)
Q Consensus 109 ~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~ 181 (588)
.-.+...+.|-.+.+...-++....+-..+-++++++ |..+...-.+...+|.++|..+...+.
T Consensus 137 ---~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV 200 (480)
T KOG2563|consen 137 ---LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILV 200 (480)
T ss_pred ---cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceec
Confidence 1122377889999999888888887887888899888 888888877788888888877776664
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-09 Score=109.04 Aligned_cols=84 Identities=11% Similarity=-0.035 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheecc----------
Q 007816 113 AIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFT---------- 182 (588)
Q Consensus 113 ~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~---------- 182 (588)
.+++.++++-++.|.|.+...++.++|++++.++++ +.+.+++.+.+..+|..+||.+++.+..
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 367889999999999999999999999999999877 8899999999999999999999886542
Q ss_pred ------ccchhHHHHHHHHHHHHHHH
Q 007816 183 ------EKSWWLGFLVSSVANFIGLI 202 (588)
Q Consensus 183 ------~~~w~~~f~i~~~~~~~~~~ 202 (588)
...|++++++.+.+.++..+
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i 107 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAI 107 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 14789998866555444433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-10 Score=115.08 Aligned_cols=180 Identities=17% Similarity=0.120 Sum_probs=151.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
+++++.+|......++...+.|...+++.+++++.-|+|....+++...|-++..+|.+++|+++|| +.|+++.....
T Consensus 207 ~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~ 284 (394)
T COG2814 207 LLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALL 284 (394)
T ss_pred HhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHH
Confidence 4688899999999999999999999999999999999999999999999999999999999999999 88888888877
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
+..+..+...+..+ +.+...+.-++.|++.+.....-..-.++ ..|++ ++...++
T Consensus 285 l~a~~~l~l~~~~~------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~~a~sl 339 (394)
T COG2814 285 LLALALLALTFTGA------------------SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------ADLAGSL 339 (394)
T ss_pred HHHHHHHHHHHhcc------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hHHHHHH
Confidence 77777776666542 34456666666777776666666665666 33455 7899999
Q ss_pred HHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGK 208 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~ 208 (588)
+...+|+|..+|-.+||.+.+++|+....++.+++.++++++.+...
T Consensus 340 ~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 340 NVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887877765543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-10 Score=118.67 Aligned_cols=172 Identities=10% Similarity=0.017 Sum_probs=139.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++++|.+|..++..++....+.+..+.+++|++ +.|.+..+.|.+.+...++..+..++.|++.|| +|+|+.+.++.+
T Consensus 201 i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~ 278 (382)
T PRK11128 201 LLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAI 278 (382)
T ss_pred HHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHH
Confidence 357788998888888877777778888888885 589999999999998888999999999999999 899999999998
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
...++.++.+.++ +.+.+++..++.|++.+...+....+..+. ++++ ++++.+.
T Consensus 279 ~~~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~ 332 (382)
T PRK11128 279 CGVVRWGLMGSTT-------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQAL 332 (382)
T ss_pred HHHHHHHHHHhhh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHH
Confidence 8888877776654 566788899999999999999999988886 4444 6777887
Q ss_pred HH-HHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHH
Q 007816 162 YL-LATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLI 202 (588)
Q Consensus 162 ~~-~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 202 (588)
+. ....+|..+||.++|++.+..++. .|++.+++.+++++
T Consensus 333 ~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~ 373 (382)
T PRK11128 333 YSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHH
Confidence 65 556788899999999999988874 55555555444433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=123.64 Aligned_cols=184 Identities=14% Similarity=0.036 Sum_probs=130.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
+++++.+|.+.+..++.....+++.+.++.|+++..|++..+++++...+.++..++.+++|+++|| +||++....+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~ 325 (438)
T TIGR00712 247 VLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVF 325 (438)
T ss_pred HccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHH
Confidence 3577888888888888888889999999999999999999999999999999999999999999999 865443333332
Q ss_pred HHHH---HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhH
Q 007816 82 LEVL---ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASY 158 (588)
Q Consensus 82 i~~i---g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~ 158 (588)
+..+ +.++..... ..+.+...+..++.|++.............|.+|+++ |++.
T Consensus 326 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 382 (438)
T TIGR00712 326 FMTLVTIAVIVYWMNP-----------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA 382 (438)
T ss_pred HHHHHHHHHHHHHhcC-----------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeee
Confidence 2222 111111111 0122333344455555433222222345779999877 9999
Q ss_pred HHHHHHHHHHH-HHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 159 FNFYLLATTVA-AVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 159 ~~~~~~~~~iG-~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
.++.+...++| .+++|.+.|++.++.||...|.+..+..+++.++.++.++
T Consensus 383 ~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 383 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred hhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998888876 5789999999998889999998877766556555554443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.7e-10 Score=120.43 Aligned_cols=165 Identities=13% Similarity=0.071 Sum_probs=132.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++++|.++.+++..++..++.+......+.|++..++ +..+.+++.+...++..++.++.|+++|| +|||+++.++.+
T Consensus 218 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~ 295 (437)
T TIGR00792 218 LFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGIL 295 (437)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence 3578899999999999888888766665556665666 56677888888899999999999999999 899999999998
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCC-chhhhhhhhHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDEND-PKGAKALASYFN 160 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~-~~~~~~Rg~~~~ 160 (588)
+.+++.++..+.+ .+.+.+++..++.|++.+...+...++++|..+.++ +..++.+|..++
T Consensus 296 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 357 (437)
T TIGR00792 296 LMVLGYLIFFFAG------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYS 357 (437)
T ss_pred HHHHHHHHHHHcc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHH
Confidence 8888887766543 144567778889999999999999999999987433 111223789999
Q ss_pred HHHHHHHHHHHHHhhhhheeccccch
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKSW 186 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~w 186 (588)
++.+...+|..+++.+.|++.+..||
T Consensus 358 ~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 358 VRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999998887665555
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.8e-10 Score=118.94 Aligned_cols=183 Identities=15% Similarity=0.075 Sum_probs=155.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchh--HHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRF--ATCLIFGT 81 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr--~~i~i~~~ 81 (588)
|.|+.+.-++..++.+-+...+++....|.++++|++..+...+..+..+.+.+|++++|++.|| +|-| ++++++.+
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHH
Confidence 56788888999999999999999999999999999999999999999999999999999999999 8999 89888888
Q ss_pred HHHHHHHHHHH--hhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 82 LEVLALVMLTI--QAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 82 i~~ig~~l~~~--a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
++.+-.+.-.+ ..+... ..+.+.+++.=++.|+..|...+..-++.+|+.|+++ .+..|
T Consensus 358 ~~~~i~~~g~~G~~~~~~g-------------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efF 418 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPSFFG-------------LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFF 418 (477)
T ss_pred HHHHHHHHHHHHhhhcccC-------------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHH
Confidence 87554444433 111000 1255667788889999999999999999999999888 89999
Q ss_pred HHHHHHHHHHHHHHhhhhheeccccc-hhHHHHHHHHHHHHHHHHHHh
Q 007816 160 NFYLLATTVAAVIGVTGIVYVFTEKS-WWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 160 ~~~~~~~~iG~~ig~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~~ 206 (588)
+++.+..-..+++||.+.+.+.+..+ -|+.+....++.++++++++.
T Consensus 419 gly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 419 GLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999887655 788888888887777776654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=119.76 Aligned_cols=157 Identities=13% Similarity=0.013 Sum_probs=134.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhH-HHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANG-ISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
+++|.++..+...++....+++.. ...+.|.++.+|.+..+.+.+...+.++..++.++.|++.|| +|||+.+..+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~ 285 (365)
T TIGR00900 207 LKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIF 285 (365)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence 567888888888888888888777 556666666799999999999999999999999999999999 899999998877
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
+..++.++..+..+ +.+.+++..++.|++.+...+...+++.|..|+++ |++.+++
T Consensus 286 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~ 341 (365)
T TIGR00900 286 VIGLAILVVGLTPP------------------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGA 341 (365)
T ss_pred HHHHHHHHHHhhch------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHH
Confidence 77777666665531 35678888999999999999999999999999777 9999999
Q ss_pred HHHHHHHHHHHHhhhhheecccc
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEK 184 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~ 184 (588)
++...++|..+++.++|++.+..
T Consensus 342 ~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 342 QFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999887654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-10 Score=120.26 Aligned_cols=153 Identities=15% Similarity=0.117 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHH-HH
Q 007816 12 VVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV-ML 90 (588)
Q Consensus 12 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~-l~ 90 (588)
+...++....++++..+++.|+++.+|++..+.+++...+.++..++.+++|+++|| +|||+.+.++..+..+..+ ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~ 322 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPAL 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH
Confidence 344455667788888999999999999999999999988999999999999999999 8999998876554433222 11
Q ss_pred HHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHH-HH
Q 007816 91 TIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATT-VA 169 (588)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~-iG 169 (588)
......+ +...+.+..++.+++.|...+....+++|.+|++. |++.+++.+...+ ++
T Consensus 323 ~~~~~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~ 380 (434)
T PRK15075 323 SWLVAAP----------------SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIF 380 (434)
T ss_pred HHHHcCC----------------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHH
Confidence 1111101 23334455666777778777778889999999888 8999888654444 45
Q ss_pred HHHHhhhhheeccccchh
Q 007816 170 AVIGVTGIVYVFTEKSWW 187 (588)
Q Consensus 170 ~~ig~~~~~~i~~~~~w~ 187 (588)
..++|.+.+++.+..+++
T Consensus 381 g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 381 GGFTPAISTWLIHVTGDK 398 (434)
T ss_pred hhhHHHHHHHHHHhcCCc
Confidence 677899999988877754
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-09 Score=112.91 Aligned_cols=366 Identities=15% Similarity=0.089 Sum_probs=214.1
Q ss_pred chHHHHHHHHHHHHHHHHHhH---HHHHHHchhccCCChhhH-HHHHHHH----HHHHHHHhhhhHHhhhcccchhHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANG---ISMVLYFKNEMHFDLAGA-SNTLTNF----FGSTFLLCLVGGFISDTFLSRFATCL 77 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~l~~~~~~~-~~i~~~~----~~~~~~~~l~~G~l~D~~~GRr~~i~ 77 (588)
.+.+.+....+.+.++.+... .+...+.....+.+.... +...... .+...+.+++-|.++|+ +|||..+.
T Consensus 18 ~~~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~ 96 (463)
T KOG2816|consen 18 ASMRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLL 96 (463)
T ss_pred chhhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHH
Confidence 344555666677777777666 555566665555433322 3333333 46788899999999999 89999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhc--cccccchhhhhhccCCCCCchhhhhh
Q 007816 78 IFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGC--GGNRGTLPAFGAGQFDENDPKGAKAL 155 (588)
Q Consensus 78 i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~--g~~~~~~~~~iae~~~~~~~~~~~~R 155 (588)
+..+..+++.++..+.. + ++++ +.++.. +...+.+.+|++|....++ |
T Consensus 97 ~~~~~~~l~~~~~~~~~--------------------~-~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R 146 (463)
T KOG2816|consen 97 LPLFGTILPALCLLFQG--------------------Y-WFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------R 146 (463)
T ss_pred HHHHHHHHhHHHHHHHH--------------------H-HHhh---hcccccchhhhhhhhhhheeeccchhH------H
Confidence 99999999998888764 2 2333 555443 4566788889999999877 8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhc
Q 007816 156 ASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNR 235 (588)
Q Consensus 156 g~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (588)
...+++..-++..+..++|..++++.+..|.-..|.++.+..++..+......|+...++.+..
T Consensus 147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~---------------- 210 (463)
T KOG2816|consen 147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD---------------- 210 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc----------------
Confidence 9999999998999999999999999999999999999999988887776666665333221110
Q ss_pred CCCCC-CCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 007816 236 KLSLP-DNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMN 314 (588)
Q Consensus 236 ~~~~p-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (588)
.+.+ ..++.... . ...| .++... +.+..|..+.......+....-
T Consensus 211 -~~~~~~~~~~~~~---------------~---~~~~-------------~~~~~~--~~~~~r~~l~l~l~~~~~~~~~ 256 (463)
T KOG2816|consen 211 -ATLRELTPGSLDS---------------S---HVAD-------------AFQSLT--KVGPDRLLLLLLLVAFLSSLPE 256 (463)
T ss_pred -ccccccCCCcccc---------------h---hhhh-------------hhhhhc--ccCCCccchHHHHHHHHHHHHH
Confidence 0000 00000000 0 0000 000000 0111111111111111111100
Q ss_pred Hhhhh-chhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHH
Q 007816 315 TCLAQ-LQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAV 393 (588)
Q Consensus 315 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~ 393 (588)
....+ ....+.....+.+... .............+..++..++..+. ++.|+ .+.+|+....+
T Consensus 257 ~~~~~~~~~~yl~~~f~w~~~~--~s~~~~~~~~~~~i~~l~~~~~l~~~---l~~~~-----------~i~lGl~~~~~ 320 (463)
T KOG2816|consen 257 AGGASDVLLLYLKAKFGWNKKE--FSDLLSLVSILGIISQLLLLPLLSSI---LGEKR-----------LISLGLLSEFL 320 (463)
T ss_pred hcCceeEEEEEEeeecCcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhh-----------HhhHHHHHHHH
Confidence 00000 0000100001111100 00001112222233333333332221 22222 46788888888
Q ss_pred HHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHH
Q 007816 394 SMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSA 473 (588)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~ 473 (588)
..+..++.. . .|++..............|..-+++..+.+.+.+|+..++......+.+.+++.
T Consensus 321 ~~~~~af~~---------------~-~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~ 384 (463)
T KOG2816|consen 321 QLLLFAFAT---------------E-TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPA 384 (463)
T ss_pred HHHHHHHhc---------------c-chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHH
Confidence 888887652 1 134444455566667788899999999999999999999999999999999999
Q ss_pred HHHHhhhhhcc
Q 007816 474 FVDIINAVTKR 484 (588)
Q Consensus 474 ~~~~~~~~~~~ 484 (588)
+.+.+...+..
T Consensus 385 ~~~~i~~~t~~ 395 (463)
T KOG2816|consen 385 LYGNIFALTLD 395 (463)
T ss_pred HHHHHHHHHHH
Confidence 88877665543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.6e-10 Score=119.02 Aligned_cols=180 Identities=14% Similarity=0.027 Sum_probs=117.9
Q ss_pred CCcchHHHHHHHHH-HHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSA-LENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 3 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
+++|.+|.++.... +....+|++.++++.|+.+.+|++..+.+...+....+..++.++.|+++|| +|||+.+.++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~ 317 (432)
T PRK10406 239 WRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGS 317 (432)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHH
Confidence 34556666555444 4478899999999999999999999999998888888888889999999999 899998887766
Q ss_pred HHHHHHHHHHH-hhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 82 LEVLALVMLTI-QAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 82 i~~ig~~l~~~-a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
+..+..+.... ..... +....+..-.+.+++.+...+..+++.+|.+|++. |+..++
T Consensus 318 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g 375 (432)
T PRK10406 318 LAALFTVPILSALQNVS----------------SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVG 375 (432)
T ss_pred HHHHHHHHHHHHHHcCC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhh
Confidence 54443322211 11100 11111111222333444445567788999999988 999999
Q ss_pred HHHHHHHH-HHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHH
Q 007816 161 FYLLATTV-AAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 161 ~~~~~~~i-G~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
+.+...++ ....+|.+.+.+....+|...+.+.++..++..+..+
T Consensus 376 ~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 376 LSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 98766554 2334777777664433355555555554444444433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-10 Score=121.42 Aligned_cols=160 Identities=10% Similarity=-0.018 Sum_probs=132.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|.++..+...++..+++.......+.|++..+|.++.+.+++...+.++..++.++.|++.|| +|||+++.++..+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~ 336 (471)
T PRK10504 258 FRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLG 336 (471)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHH
Confidence 578889999999999888876666667777777899999999999998888888999999999999 8999999999998
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.++..+... ..+.+.+.+..++.|+|.|...+....+..+..|++. |+..++++
T Consensus 337 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~ 394 (471)
T PRK10504 337 LALVSLLFMLVAL----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLL 394 (471)
T ss_pred HHHHHHHHHhccc----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHH
Confidence 8888776665431 1134445566778899999999999999999999777 99999999
Q ss_pred HHHHHHHHHHHhhhhheeccccc
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKS 185 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~ 185 (588)
+....+|..+|+.++|.+.+..+
T Consensus 395 ~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 395 SMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998876644433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.7e-10 Score=116.71 Aligned_cols=179 Identities=12% Similarity=0.007 Sum_probs=136.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHH-HHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFF-GSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~-~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
+|+|.+|..+...++...+.....+...+|+++ .|+++.+.|++..... ....++.+++|++.|| +|+|+.+.++..
T Consensus 205 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~ 282 (390)
T TIGR02718 205 FRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVG 282 (390)
T ss_pred HcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence 566778888888888888888888888888876 7999999999988875 4667789999999999 899999998877
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCC-CCchhhhhhhhHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDE-NDPKGAKALASYFN 160 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~-~~~~~~~~Rg~~~~ 160 (588)
+..+..++......... ..+...++...++.+++.|...+...++..+..++ +. +++.++
T Consensus 283 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~ 343 (390)
T TIGR02718 283 LAGSLALLWFAQAAFWL-------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVT 343 (390)
T ss_pred HHHHHHHHHHHHHHccc-------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHH
Confidence 66443333222111000 01223344555666777888888888888777765 55 899999
Q ss_pred HHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHH
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLI 202 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 202 (588)
..+...++|..+||.++|++.+..||+..|.+..++.+++.+
T Consensus 344 ~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 344 AVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988999999887776555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.8e-10 Score=118.08 Aligned_cols=166 Identities=9% Similarity=-0.096 Sum_probs=121.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchh-ccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHH-HHHHHH
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKN-EMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATC-LIFGTL 82 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i-~i~~~i 82 (588)
.+.+|...+..++....++++.++++.|+++ ..+++..+++.......++..++.+++|+++|| +|||+.. .+...+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~ 319 (412)
T TIGR02332 241 TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLF 319 (412)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHH
Confidence 4568888999999999999999999999987 357888899999999999999999999999999 8977753 333333
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++. +..... + +....+++-.+.++|.....+.......|.+|+++ |+.++++.
T Consensus 320 ~~~~~-~~~~~~--~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~ 374 (412)
T TIGR02332 320 AAAGW-LLASAT--D----------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVI 374 (412)
T ss_pred HHHHH-HHHHhc--C----------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHH
Confidence 33332 222211 1 11112222233344444444445556677788776 99999999
Q ss_pred HHHHHHHHHHHhhhhheecccc-chhHHHHHHHHH
Q 007816 163 LLATTVAAVIGVTGIVYVFTEK-SWWLGFLVSSVA 196 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~-~w~~~f~i~~~~ 196 (588)
+...++|..++|.+.+.+.+.. +|+..|++..++
T Consensus 375 ~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 375 NATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 9999999999999999988866 599988876654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-10 Score=120.52 Aligned_cols=168 Identities=15% Similarity=-0.049 Sum_probs=121.3
Q ss_pred HHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 007816 27 ISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGK 106 (588)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~ 106 (588)
....+++.+++|++..+.++....+.++..++.+++|+++|| +|||+.+.++.++..++.++.++...... +
T Consensus 304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----- 375 (481)
T TIGR00879 304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFV--T----- 375 (481)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhccc--C-----
Confidence 344455666789999888999999999999999999999999 89999999998888888777763221000 0
Q ss_pred CCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccch
Q 007816 107 SSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSW 186 (588)
Q Consensus 107 ~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w 186 (588)
+-++..+...+....++.+.......+....+++|.+|++. |++.+++.....++|.++++.+.+++.++.+|
T Consensus 376 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~ 448 (481)
T TIGR00879 376 -GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTMLESIGV 448 (481)
T ss_pred -CcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 00000122223333333333233345777788899999877 99999999999999999999999998888899
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc
Q 007816 187 WLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 187 ~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
++.|++.+++.++..++.++..|
T Consensus 449 ~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 449 GGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred cceehhHHHHHHHHHHHHheecc
Confidence 99998887776666665544333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-10 Score=117.99 Aligned_cols=175 Identities=13% Similarity=0.054 Sum_probs=137.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhcc---CCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEM---HFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIF 79 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~ 79 (588)
+++|.+|..++..++....+.......+.|+++.+ +.+....|.+.+...+...++.+..|++.|| +|||+.+.++
T Consensus 212 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~ 290 (396)
T TIGR00882 212 FRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIA 290 (396)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHH
Confidence 56788887777776665556666667778887766 5566677888888888889999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
.++..++..+.+.++ +.+.+++.++++|++.+........+..+..+++. ++...
T Consensus 291 ~~l~~l~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~ 345 (396)
T TIGR00882 291 GTIMSVRIIGSSFAT-------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIY 345 (396)
T ss_pred HHHHHHHHHHHHhcC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEee
Confidence 998888887766654 44567888999999987776666677777777655 66655
Q ss_pred HH-HHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHH
Q 007816 160 NF-YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIA 203 (588)
Q Consensus 160 ~~-~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 203 (588)
+. +.....+|..+++.++|++.+..||+..|.+.+++.++..++
T Consensus 346 ~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 346 LIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 55 557889999999999999999889999999977775544443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=117.77 Aligned_cols=178 Identities=13% Similarity=0.028 Sum_probs=124.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhH-----HHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFA-----TCL 77 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~-----~i~ 77 (588)
++.+.+|.+.+..++.....+++.+.++.|+.+++|++..+++.+.+.+.++..++.+++|+++|| +|||+ ...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~ 327 (476)
T PLN00028 249 VTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWA 327 (476)
T ss_pred HcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHH
Confidence 355677888877777666777788888999999999999999999999999999999999999999 89762 222
Q ss_pred HHHHHHHHHHH-HHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhh
Q 007816 78 IFGTLEVLALV-MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALA 156 (588)
Q Consensus 78 i~~~i~~ig~~-l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg 156 (588)
. .....++.+ +..+.. ..+.+..++..++.+++.+...+...+++.+..| +. |+
T Consensus 328 ~-~~~~~l~~i~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g 382 (476)
T PLN00028 328 L-WIVQTLGGVFCIWLGR-----------------ANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LG 382 (476)
T ss_pred H-HHHHHHHHHHHHHhcc-----------------cchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------ch
Confidence 1 122222221 122221 1133445556667777766666666666666644 34 88
Q ss_pred hHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhh
Q 007816 157 SYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAG 207 (588)
Q Consensus 157 ~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~ 207 (588)
...++.....++|+.+++.+.+ .....+|+..|.+.+++.+++.++.++.
T Consensus 383 ~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 383 VISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 9999988777888888877644 2234579999999887777776665554
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.1e-10 Score=118.76 Aligned_cols=178 Identities=15% Similarity=0.040 Sum_probs=153.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
+.++|.+..++...++.++....+...++.+.++.+|.+....|++.+++.+|+.++.++.+++.++ +++++.+..+.+
T Consensus 214 v~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~ 292 (524)
T PF05977_consen 214 VRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASL 292 (524)
T ss_pred HhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHH
Confidence 3456777777776777667666777777888889999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
++.++.+..++++ +.+...+..++.|++.....+...+.+.+..|++. |||.+++
T Consensus 293 ~~a~~~~~lal~~-------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si 347 (524)
T PF05977_consen 293 LFALALLLLALSP-------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSI 347 (524)
T ss_pred HHHHHHHHHhcch-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHH
Confidence 8888888888876 55677888899999999999999999999999888 9999999
Q ss_pred HHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHH
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
+++..+.+..+|.++.|++.+..|-+..+.+.++..++..++..
T Consensus 348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888887776555555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-10 Score=117.43 Aligned_cols=165 Identities=13% Similarity=0.073 Sum_probs=126.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHH-HH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIF-GT 81 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~-~~ 81 (588)
+++|.+|.+.+..++.....+++.+.++.|+++.+|++..+.+.+.+.+.++..++.+++|+++||..+||+..... ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~ 292 (379)
T TIGR00881 213 LLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFM 292 (379)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHH
Confidence 46778898999999988888999999999999999999999999999999999999999999999822333332221 11
Q ss_pred HH-HHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 82 LE-VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 82 i~-~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
.. .++..+..... ..+...+.+..++.|+..+...+....+..|.+|+++ |++..+
T Consensus 293 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g 349 (379)
T TIGR00881 293 ALIIVSLLVYWLNP-----------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAG 349 (379)
T ss_pred HHHHHHHHHHhcCc-----------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHH
Confidence 11 11111111111 1134455666677787766677777888999999887 999999
Q ss_pred HHHHHHHHHHHHHhhhhheeccccchhHHH
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKSWWLGF 190 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f 190 (588)
++....++|..++|.+.|++.++.||+..|
T Consensus 350 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 350 FVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 999999999999999999999999998654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-09 Score=111.82 Aligned_cols=174 Identities=11% Similarity=0.042 Sum_probs=133.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++++|.+|..+...++...+.++..+...+++.+++|++..+.+.+...+.++..++.++.|++.|| .+| +.+..+..
T Consensus 212 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~-~~l~~~~~ 289 (394)
T PRK10213 212 LLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVK-LALAGAPL 289 (394)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cch-hHHHHHHH
Confidence 3577888888777777777778877777666667889999999999999999999999999999999 654 44444444
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
+..+..++..... .+.+.+.+..++.|++.+...+..++++.+..| ++ +++..+.
T Consensus 290 ~~~~~~~~l~~~~------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~ 344 (394)
T PRK10213 290 VLAVSALVLTLWG------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQ------AEKAGSI 344 (394)
T ss_pred HHHHHHHHHHHHh------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-cc------HHHHHHH
Confidence 4444433333222 145567788899999999999999999998887 33 4566677
Q ss_pred HHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHH
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLI 202 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 202 (588)
++...++|..+|+.++|++.+..|++..+.......++..+
T Consensus 345 ~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 345 QVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence 77788999999999999999988999888887765444433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=116.88 Aligned_cols=162 Identities=12% Similarity=0.057 Sum_probs=130.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++++|.++..++..++...+++...+..+.|+++.+|.+....++......++..++.++.+++.|| +|+|+++.++.+
T Consensus 224 l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~ 302 (448)
T PRK09848 224 LKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGAL 302 (448)
T ss_pred HhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence 4688999999999999888888887777778888899877655555555567788899999999999 899999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCch-hhhhhhhHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPK-GAKALASYFN 160 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~-~~~~Rg~~~~ 160 (588)
+..+|.++..+.. ..+.+.+++..++.|+|.++..+...++.+|..|.++-| .++.+|..++
T Consensus 303 ~~~i~~~~~~~~~-----------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~ 365 (448)
T PRK09848 303 LGTCGYLLFFWVS-----------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYS 365 (448)
T ss_pred HHHHHHHHHHHcC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHH
Confidence 9999887776643 125566778888999999999999999999999865411 1222588899
Q ss_pred HHHHHHHHHHHHHhhhhheec
Q 007816 161 FYLLATTVAAVIGVTGIVYVF 181 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~ 181 (588)
.+.+...+|..+|+.+.+.+.
T Consensus 366 ~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 366 LFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988776654
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.2e-12 Score=134.95 Aligned_cols=195 Identities=11% Similarity=0.123 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHH
Q 007816 10 VYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVM 89 (588)
Q Consensus 10 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l 89 (588)
.+++..+.. ...++.+......+++.|+++..+.|++.+.+-++..+..++..++++| ..|-|-+-+|.++..+|+++
T Consensus 7 ~~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l 84 (539)
T PF03137_consen 7 FLCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLL 84 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHH
Confidence 345555555 7788888888899999999999999999999999999999999999999 67888888999999999999
Q ss_pred HHHhhccccCC---------------CCCC------------CCCCcC-C---chhHHHHHHHHHHHHHhccccccchhh
Q 007816 90 LTIQAYSKNLH---------------PPDC------------GKSSCL-K---GAIAAYFYGSLYLYSFGCGGNRGTLPA 138 (588)
Q Consensus 90 ~~~a~~~~~~~---------------~~~~------------~~~~~~-~---~~~~~~l~~~R~l~GiG~g~~~~~~~~ 138 (588)
.++.+.....- ...| .++.|. + ..-+.++++|.++.|+|....++...+
T Consensus 85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t 164 (539)
T PF03137_consen 85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT 164 (539)
T ss_dssp -------------------------------------------------------------------SSS----------
T ss_pred HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence 98765432110 1112 000011 1 123688999999999999999999999
Q ss_pred hhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccc----------------------cchhHHHHHHHHH
Q 007816 139 FGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTE----------------------KSWWLGFLVSSVA 196 (588)
Q Consensus 139 ~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~----------------------~~w~~~f~i~~~~ 196 (588)
|+-|-.++++ -...+++.+.+..+|+++|+.++++..+. ..|++.|.+.+.+
T Consensus 165 YiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~ 238 (539)
T PF03137_consen 165 YIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGIL 238 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 9999999887 77999999999999999999988755321 1388888888877
Q ss_pred HHHHHHHHHhhcccee
Q 007816 197 NFIGLIALAAGKCLYR 212 (588)
Q Consensus 197 ~~~~~~~~~~~~~~~~ 212 (588)
.++..+.++.+.++.+
T Consensus 239 ~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 239 LFLSAIPLFFFPKKLP 254 (539)
T ss_dssp ----------------
T ss_pred HHHHHHHHHcCCccCC
Confidence 6666665555554433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-09 Score=112.13 Aligned_cols=174 Identities=15% Similarity=0.041 Sum_probs=126.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 83 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~ 83 (588)
+++.+|......++...+.+.+.+.+++|+++.+|+++.+.+.+.+.+.++..++.++.|++.|| +|||+.+.++..+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~ 275 (382)
T PRK10091 197 RSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFII 275 (382)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHH
Confidence 45567777666666666677777778889988899999999999999999999999999999999 89999999998888
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccC-CCCCchhhhhhhhHHHHH
Q 007816 84 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQF-DENDPKGAKALASYFNFY 162 (588)
Q Consensus 84 ~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~-~~~~~~~~~~Rg~~~~~~ 162 (588)
.++.++.....+ +.+...+..++.++|.+...+.......+.. +++. ++... .
T Consensus 276 ~i~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~--~ 329 (382)
T PRK10091 276 VLALLMLFFFGG------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAAG--G 329 (382)
T ss_pred HHHHHHHHHHHh------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHHH--H
Confidence 888766544321 2334555666677766555544443333333 3222 34332 3
Q ss_pred HHHHHHHHHHHhhhhheecc-ccchhHHHHHHHHHHHHHHHHH
Q 007816 163 LLATTVAAVIGVTGIVYVFT-EKSWWLGFLVSSVANFIGLIAL 204 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~-~~~w~~~f~i~~~~~~~~~~~~ 204 (588)
+...++|..+||.++|++.+ ..+|+..|.+.+...++....+
T Consensus 330 ~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 330 QIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 55678999999999999877 4789999998876654444433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.3e-10 Score=120.35 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=136.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|.++..++..++..+.+++....++.|+++.+|+++.+.+++.....++..++.+++|++.|| +|||+.+.++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~ 330 (485)
T TIGR00711 252 FKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLIL 330 (485)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHH
Confidence 567888888888999999999999999999999999999999999999999999999999999999 8999999999988
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++..+....... ..+.+.++...++.|+|.|...+.......+..|+++ |+++.+++
T Consensus 331 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~ 389 (485)
T TIGR00711 331 YAVGFYWRAFTFTP---------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLS 389 (485)
T ss_pred HHHHHHHHhccCCC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHH
Confidence 88888877632211 1245567777889999999988877788888888776 99999999
Q ss_pred HHHHHHHHHHHhhhhheeccc
Q 007816 163 LLATTVAAVIGVTGIVYVFTE 183 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~ 183 (588)
....++|..+|+.+.+.+.++
T Consensus 390 ~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 390 NFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887766543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.1e-09 Score=110.13 Aligned_cols=169 Identities=12% Similarity=0.073 Sum_probs=129.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|.+|...+...+....+++.....+.|+++++|.++.+.+.+.+...++..++.+++|++.|| +|||+.+.++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~ 281 (385)
T TIGR00710 203 LKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLIL 281 (385)
T ss_pred HcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 467778887777777777778888888888888999999999999999999999999999999999 8999999999888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.++........ ......+++...+.|+|.+...+....+..|..| ++ |++..+++
T Consensus 282 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~ 340 (385)
T TIGR00710 282 FAVSAVLLEITAILG--------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALF 340 (385)
T ss_pred HHHHHHHHHHHHHhc--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHH
Confidence 888877776543111 0134456667788999999999999999999876 44 78888887
Q ss_pred HHHHH-HHHHHHhhhhheeccccchhHHHHHHH
Q 007816 163 LLATT-VAAVIGVTGIVYVFTEKSWWLGFLVSS 194 (588)
Q Consensus 163 ~~~~~-iG~~ig~~~~~~i~~~~~w~~~f~i~~ 194 (588)
..... +|...++.++ .+.+..+|...+....
T Consensus 341 ~~~~~~~g~i~~~~~~-~~~~~~~~~~~~~~~~ 372 (385)
T TIGR00710 341 GTLRLVLGAIVGYLVS-LIHGNTAWPMSLSCLV 372 (385)
T ss_pred HHHHHHHHHHHHHHHH-hccccChHHHHHHHHH
Confidence 76654 4666665544 5555555555544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-09 Score=112.11 Aligned_cols=177 Identities=15% Similarity=0.160 Sum_probs=123.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHH-HHHHHHhhhhHHhhhcccchhHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFF-GSTFLLCLVGGFISDTFLSRFATCLIFG 80 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~-~~~~~~~l~~G~l~D~~~GRr~~i~i~~ 80 (588)
++++|.++.+++..++...+.+...+...+++.+++|+++.+.+++.+... ++..++.+++|++.|| +|||+.+.++.
T Consensus 205 l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~ 283 (402)
T PRK11902 205 FFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFG 283 (402)
T ss_pred HHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 357788888777777766655444455566788889999999999987654 5688999999999999 89999988887
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHH----HHHHHhccccccchhhhhhccCCCCCchhhhhhh
Q 007816 81 TLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSL----YLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALA 156 (588)
Q Consensus 81 ~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R----~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg 156 (588)
.+..+..+........+ .+.+.+++.- +..|++.+...+....++.+..|.++ +
T Consensus 284 ~~~~l~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~- 341 (402)
T PRK11902 284 VLQAVSNLGYWVLAVTP---------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y- 341 (402)
T ss_pred HHHHHHHHHHHHHHhcC---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H-
Confidence 77766654432211101 1333444443 45666677778888888887777433 3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHH
Q 007816 157 SYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIAL 204 (588)
Q Consensus 157 ~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 204 (588)
+.+....++|..++..++|.+.+..||+..|.+.+.+.++..++.
T Consensus 342 ---~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 342 ---ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 333334466776566688999999999999999887766665544
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=118.73 Aligned_cols=157 Identities=11% Similarity=0.028 Sum_probs=135.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|.++..++..++...++++....++.|+++.+|+|+.++|.....+.++..++.+++|++.|| +|||+.+..+.++
T Consensus 256 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~ 334 (495)
T PRK14995 256 FTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMAL 334 (495)
T ss_pred hCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHH
Confidence 567888888889999889999998899999999999999999999999999999999999999999 8999999999988
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.++...... ..+.+...+..++.|+|.|...+.....+.+..|+++ ++...+.+
T Consensus 335 ~~~~~~~l~~~~~----------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~ 392 (495)
T PRK14995 335 SALSFYGLAMTDF----------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIE 392 (495)
T ss_pred HHHHHHHHHHhcC----------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHH
Confidence 8888876654321 1134456677889999999999999999999998877 89999999
Q ss_pred HHHHHHHHHHHhhhhheecc
Q 007816 163 LLATTVAAVIGVTGIVYVFT 182 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~ 182 (588)
.+..++|..+|+.+.+.+.+
T Consensus 393 ~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 393 TMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888776643
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=112.48 Aligned_cols=157 Identities=10% Similarity=0.001 Sum_probs=125.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhccc-chhHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFL-SRFATCLIFG 80 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~-GRr~~i~i~~ 80 (588)
++++|.+|.+....++....++++.++++.|+++ .|.+..+.+.+.+.+.++..++.++.|++.|| + +||+.+.++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~ 270 (355)
T TIGR00896 193 IWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLA 270 (355)
T ss_pred hhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHH
Confidence 4577888888888888888889999999989875 79999999999999999999999999999999 8 6777788888
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 81 TLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 81 ~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
.+..++.+++.+..+ +. .. ..-++.|+|.|...|+..+.+.+..++++ .++..++
T Consensus 271 ~~~~~~~~~~~~~~~------------------~~-~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~ 325 (355)
T TIGR00896 271 VLQLVGLCGLLFAPM------------------HG-LW-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSA 325 (355)
T ss_pred HHHHHHHHHHHHhhh------------------hH-HH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHH
Confidence 888888777766531 11 11 13467899999999988887776655322 1678888
Q ss_pred HHHHHHHHHHHHHhhhhheeccccc
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKS 185 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~ 185 (588)
+.+...++|..++|.+.|++.++.+
T Consensus 326 ~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 326 MAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888999999999999877654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=113.83 Aligned_cols=175 Identities=14% Similarity=-0.028 Sum_probs=136.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchh--ccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKN--EMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIF 79 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~ 79 (588)
++++|.+|...+..++..+.+....+....|+.. +.+.+....+++...+.+......+..|++.|| +|||+.+.++
T Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~ 280 (395)
T PRK10054 202 LLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAG 280 (395)
T ss_pred hccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHH
Confidence 4677888888888888777766666666666643 455666677888888777777777888999999 8999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
..+..++.++..++.+ +.+.+.+..++.|+|.+...|...+++.+..|++. |++.+
T Consensus 281 ~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~ 336 (395)
T PRK10054 281 TLCFVIGLVGFIFSGN------------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYF 336 (395)
T ss_pred HHHHHHHHHHHHHcch------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehH
Confidence 9888888877765421 45567778899999999999999999999999877 88888
Q ss_pred HHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHH
Q 007816 160 NFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLI 202 (588)
Q Consensus 160 ~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 202 (588)
+... ..++|..+||.++|++.++.|....|++.+....+..+
T Consensus 337 ~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 378 (395)
T PRK10054 337 SAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWL 378 (395)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHH
Confidence 8654 56689999999999999988888888775554433333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=128.87 Aligned_cols=169 Identities=13% Similarity=0.002 Sum_probs=140.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChh-hHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLA-GASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFG 80 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~ 80 (588)
+++++.+|..++..++..+..+.+...++.|+++.+|++.. +.+++.+.+.++..++.+++|+++|| +++|+.+.++.
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~ 306 (1146)
T PRK08633 228 LRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGA 306 (1146)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHH
Confidence 35677788877777777777777888899999999999999 99999999999999999999999999 89999999988
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 81 TLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 81 ~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
++..++.++..+.. +.+.+++..++.|++.|+..+...+++.+.+|++. ||++++
T Consensus 307 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~ 361 (1146)
T PRK08633 307 LGLALSLFLLPTAP-------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLA 361 (1146)
T ss_pred HHHHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhH
Confidence 88888877777654 45567788899999999999999999999999888 999999
Q ss_pred HHHHHHHHHHHHHhhhhheecc-ccchhHHHHHHHHH
Q 007816 161 FYLLATTVAAVIGVTGIVYVFT-EKSWWLGFLVSSVA 196 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~-~~~w~~~f~i~~~~ 196 (588)
+.++..++|.++++.+++.+.. .+++...|.+.+.+
T Consensus 362 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 362 ANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999888777765543 24555555554443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.2e-09 Score=111.95 Aligned_cols=157 Identities=7% Similarity=-0.084 Sum_probs=114.8
Q ss_pred HHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcC
Q 007816 31 LYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCL 110 (588)
Q Consensus 31 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~ 110 (588)
+++.+++|.+..+..+......+...++.+++|++.|| +|||+.++++.++.+++.++++......
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~------------- 360 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ------------- 360 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcC-------------
Confidence 44556788887777777777788889999999999999 8999999999999999888776543111
Q ss_pred CchhHHHHHHHHHHHHHhccc-cccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhh------heeccc
Q 007816 111 KGAIAAYFYGSLYLYSFGCGG-NRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGI------VYVFTE 183 (588)
Q Consensus 111 ~~~~~~~l~~~R~l~GiG~g~-~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~------~~i~~~ 183 (588)
. .......+.++.+++.+. ..|...++++|.+|+++ |++.+++.+...++|..+++.+. +++.+.
T Consensus 361 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~ 432 (479)
T PRK10077 361 -A-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAH 432 (479)
T ss_pred -c-ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhh
Confidence 0 111233344555555543 34778999999999877 99999999988888888775443 455567
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 184 KSWWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 184 ~~w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
.+|++.|++.++..+++.++.++..|
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 433 FHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhccc
Confidence 88998898877766666555544444
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.7e-09 Score=111.35 Aligned_cols=180 Identities=10% Similarity=-0.020 Sum_probs=129.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHH-----
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATC----- 76 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i----- 76 (588)
+++++.+|.+.+..++..+.++...+.++.|+++.+|++..+.++..+...++..++.+++|+++|| ++||+..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~ 335 (465)
T TIGR00894 257 IPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAA 335 (465)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999999 6755321
Q ss_pred ---HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhh
Q 007816 77 ---LIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAK 153 (588)
Q Consensus 77 ---~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~ 153 (588)
..+......+.++...... . .+....++.-.+.+.+.+...+.......|..|. .
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~----- 393 (465)
T TIGR00894 336 RKIFNGIGGLGPGIFAYALPYL-S---------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F----- 393 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-C---------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H-----
Confidence 1111111111111111110 0 0223344445555555555555555555566653 4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhheeccc---cchhHHHHHHHHHHHHHHHHHH
Q 007816 154 ALASYFNFYLLATTVAAVIGVTGIVYVFTE---KSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 154 ~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~---~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
+|...++.....++|..++|.+.+++.+. .+|+..|.+.++..+++.++..
T Consensus 394 -~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 394 -LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 89999999999999999999999988653 3488899888877776665544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-09 Score=111.90 Aligned_cols=176 Identities=14% Similarity=0.091 Sum_probs=126.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|.++..++..+.....+..+...++.|+++..+ ++.+.+++.+...++...+....+++.|++++.++.+..+.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 283 (400)
T PRK11646 205 LRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLI 283 (400)
T ss_pred HcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 456667665555444333334445566777776666 6688888888877666555544455555437777778888888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.++.+.++ +.+.+++..++.++|.+...|..++++.|..|+++ ||+.++++
T Consensus 284 ~~~~~~~l~~~~-------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~ 338 (400)
T PRK11646 284 MSLSMFPIGMVS-------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFS 338 (400)
T ss_pred HHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHH
Confidence 888877776664 34456777888999999999999999999999888 99999999
Q ss_pred HHHHHHHHHHHhhhhheecccc---c-hhHHHHHHHHHHHHHHHHH
Q 007816 163 LLATTVAAVIGVTGIVYVFTEK---S-WWLGFLVSSVANFIGLIAL 204 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~---~-w~~~f~i~~~~~~~~~~~~ 204 (588)
....++|..+||.++|++.++. + ....|.+..+..++..+.+
T Consensus 339 ~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (400)
T PRK11646 339 RLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLAL 384 (400)
T ss_pred HHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999997653 2 3566666555554444443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.9e-09 Score=110.85 Aligned_cols=143 Identities=15% Similarity=0.011 Sum_probs=107.7
Q ss_pred HHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 007816 23 IANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPP 102 (588)
Q Consensus 23 ~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~ 102 (588)
+.+.+.++.|+++ .|.+..+.+.+.+.+.++..++.+++|++.|| +|||+.+..+.++..++.++......
T Consensus 248 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~------- 318 (426)
T PRK12307 248 WPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIPQ------- 318 (426)
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHcc-------
Confidence 3456677777765 69999999999999999999999999999999 89999999888777665554443321
Q ss_pred CCCCCCcCCchhHHHHHHHHHHHHH--hccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhhee
Q 007816 103 DCGKSSCLKGAIAAYFYGSLYLYSF--GCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYV 180 (588)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~R~l~Gi--G~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i 180 (588)
... ..+.-.+.|+ +.....+..+.++.|.+|++. |++.+++.+...++|..++|.+.+++
T Consensus 319 ----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 319 ----------DNY--LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred ----------ccH--HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 011 1222233333 333445677889999999877 99999999999999999999999999
Q ss_pred ccccchhHHHHH
Q 007816 181 FTEKSWWLGFLV 192 (588)
Q Consensus 181 ~~~~~w~~~f~i 192 (588)
.+..++.....+
T Consensus 381 ~~~~g~~~~~~~ 392 (426)
T PRK12307 381 GITMGLGAALTF 392 (426)
T ss_pred HHcccHHHHHHH
Confidence 888886544333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-09 Score=111.33 Aligned_cols=147 Identities=16% Similarity=0.060 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHH
Q 007816 7 NFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 86 (588)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig 86 (588)
..+.+.+..++....++.+...++ ++.+++|.+..+.+.+.+.+.++..++.+++|++.|| +|||+.+....+..+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ 328 (398)
T TIGR00895 251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAVFA 328 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHH
Confidence 345556666677777777777776 7778899999999999999999999999999999999 89995544443333333
Q ss_pred HHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHH
Q 007816 87 LVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLAT 166 (588)
Q Consensus 87 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~ 166 (588)
.++..... +.+.+++..++.|++.+...+...++++|.+|+++ |++.+++.+...
T Consensus 329 ~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~ 383 (398)
T TIGR00895 329 VLVGSTLF-------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIGIG 383 (398)
T ss_pred HHHHHHhh-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHHHH
Confidence 32222122 34567788899999999999999999999999777 999999999999
Q ss_pred HHHHHHHhhhhhee
Q 007816 167 TVAAVIGVTGIVYV 180 (588)
Q Consensus 167 ~iG~~ig~~~~~~i 180 (588)
.+|..+||.++|++
T Consensus 384 ~~g~~~g~~~~G~l 397 (398)
T TIGR00895 384 RLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHhHHhc
Confidence 99999999998865
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=127.77 Aligned_cols=188 Identities=13% Similarity=-0.093 Sum_probs=142.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
+.++|.+|...+..++..+.++++.+.++.|+++.+|.+..+.|++.+.+.++..++.++.|++.|+ .++++.+.++.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~ 299 (1140)
T PRK06814 221 AKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGAL 299 (1140)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHH
Confidence 3577889999999998888888899999999999999999999999999999999999999999998 787777776766
Q ss_pred HHHHHHHHHHHhhccccCCCCCC-CCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDC-GKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~-~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
+..++.+.+++..........+. ....--...+.+.++++.++.|++.|+..+..++++.+.+|++. ||++++
T Consensus 300 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g 373 (1140)
T PRK06814 300 LMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIA 373 (1140)
T ss_pred HHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeH
Confidence 66665554444200000000000 00000000245677888999999999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHhhhhheec-cccchhHHHHHHHHH
Q 007816 161 FYLLATTVAAVIGVTGIVYVF-TEKSWWLGFLVSSVA 196 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~-~~~~w~~~f~i~~~~ 196 (588)
...+..++|..+++.+++.+. ...++...|++.+.+
T Consensus 374 ~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 374 ANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999999888876 345666666554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.7e-09 Score=105.32 Aligned_cols=165 Identities=9% Similarity=-0.027 Sum_probs=129.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhc--cCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNE--MHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFG 80 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~ 80 (588)
++.|.++...+..++.--.--++.++++.|+++. +|+++.+.+...+.+.++..++.++++++.|| +|+||.+.++.
T Consensus 137 ~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~ 215 (310)
T TIGR01272 137 FQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNA 215 (310)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHH
Confidence 4556677766666665556667888899999854 79999999999999999999999999999999 99999999988
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 81 TLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 81 ~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
.+.+++.++....+. . ....+-++.|++.+.+.|+..+...+..|++. .++. +
T Consensus 216 ~l~~~~~~l~~~~~~-------------------~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-----~~as--a 268 (310)
T TIGR01272 216 FLAVLLSIGAALTHG-------------------Y-VAMWFVLALGLFNSIMFPTIFSLALNALGRHT-----SQGS--G 268 (310)
T ss_pred HHHHHHHHHHHHcCC-------------------H-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hhhH--H
Confidence 888887765554431 1 12335558999999999999999988887532 1333 3
Q ss_pred HHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHH
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVA 196 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~ 196 (588)
+. .+..+|.+++|.+.|++.+..|.+..|+++.+.
T Consensus 269 i~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 269 IL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 33 466789999999999999888988888866554
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-09 Score=109.99 Aligned_cols=144 Identities=15% Similarity=0.122 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHH-HHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFF-GSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 86 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~-~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig 86 (588)
++.+.+..++..++++++.+.++.|+++ +|++..+.+.+.++.. ++..++.+++|++.|| +|||+.+.++.++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Confidence 7777888888889999999999999987 9999999999888765 5778999999999999 89999999999888877
Q ss_pred HHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHH
Q 007816 87 LVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLAT 166 (588)
Q Consensus 87 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~ 166 (588)
..+..+..+..+. .+ ....+.+.+....++.+++.+...+...+++.|.+|+++ ||+.+++++...
T Consensus 289 ~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~ 354 (356)
T TIGR00901 289 NAGFVWLASNGHH-------DG-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSLS 354 (356)
T ss_pred HHHHHHHHhcCcc-------cc-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHH
Confidence 6655543211000 00 001245678888899999999999999999999999999 999999987765
Q ss_pred H
Q 007816 167 T 167 (588)
Q Consensus 167 ~ 167 (588)
|
T Consensus 355 ~ 355 (356)
T TIGR00901 355 A 355 (356)
T ss_pred h
Confidence 4
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-07 Score=93.71 Aligned_cols=106 Identities=17% Similarity=0.045 Sum_probs=80.1
Q ss_pred HHHHHHHchhccCC---C----hhhHHHHHHHHHHHHHHHhhhhHHhhhcccc-hhHHHHHHHHHHHHHHHHHHHhhccc
Q 007816 26 GISMVLYFKNEMHF---D----LAGASNTLTNFFGSTFLLCLVGGFISDTFLS-RFATCLIFGTLEVLALVMLTIQAYSK 97 (588)
Q Consensus 26 ~~~~~~~~~~~l~~---~----~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~G-Rr~~i~i~~~i~~ig~~l~~~a~~~~ 97 (588)
+...++|+++..+- + ....+...++..+..++.+|+-|.++|. .| ||+.+-+...+.++..+++.++++
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~~-- 111 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIPP-- 111 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhCC--
Confidence 44677888876553 2 2445677777788888889999999999 56 555666666777777777777752
Q ss_pred cCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCC
Q 007816 98 NLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDEND 148 (588)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~ 148 (588)
..+++..++.-++..++.........++..+..++++
T Consensus 112 --------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~ 148 (438)
T COG2270 112 --------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN 148 (438)
T ss_pred --------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc
Confidence 1256667777888999999999999999999998766
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.5e-09 Score=111.21 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=138.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++++|.+..+++..++..++.....+....|.+..+|.+ ...+.+..+..++..++.++.++++|| +|||+++..+.+
T Consensus 221 ~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~ 298 (428)
T PF13347_consen 221 LFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLL 298 (428)
T ss_pred hcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHH
Confidence 578899999999999998888887877777778778866 677888888999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCch-hhhhhhhHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPK-GAKALASYFN 160 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~-~~~~Rg~~~~ 160 (588)
+.+++.++..+.. ..+.+.+++.-++.|+|.|...+...++++|+.+.++-| .++..|..++
T Consensus 299 ~~~~~~~~~~~~~-----------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s 361 (428)
T PF13347_consen 299 LAALGFLLLFFLG-----------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS 361 (428)
T ss_pred HHHHHHHHHHHHH-----------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence 9999999888775 136778999999999999999999999999999865422 2233688999
Q ss_pred HHHHHHHHHHHHHhhhhheec
Q 007816 161 FYLLATTVAAVIGVTGIVYVF 181 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~ 181 (588)
.+.+...+|..++..+.+.+.
T Consensus 362 ~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 362 VNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999988776553
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.9e-09 Score=98.60 Aligned_cols=173 Identities=15% Similarity=0.110 Sum_probs=138.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH-HH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL-EV 84 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i-~~ 84 (588)
+.+|++..+..+-.+..+=.++..+.++++.+|+|+..++.+.+...+.+++.+++.|.+.|+ +||+-....+..+ +.
T Consensus 264 ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~a~~~tl 342 (459)
T KOG4686|consen 264 PPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVASACILTL 342 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHHHHHHHH
Confidence 469999999999888888888889999999999999999999999999999999999999999 8999877666555 45
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 85 LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 85 ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
+|.....+..- .=+.+..+.|+.......+.-+.++-+.|+++ .|.+++..|.
T Consensus 343 ~~H~~l~Ft~l---------------------sPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qs 395 (459)
T KOG4686|consen 343 LGHSGLFFTFL---------------------SPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQS 395 (459)
T ss_pred HHhhhHHhhhc---------------------cHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHH
Confidence 56667666642 13567778888888777777777888888888 9999999999
Q ss_pred HHHHHHHHHhhhhheeccccc---hhHHHHHHHHH-HHHHHHHHHh
Q 007816 165 ATTVAAVIGVTGIVYVFTEKS---WWLGFLVSSVA-NFIGLIALAA 206 (588)
Q Consensus 165 ~~~iG~~ig~~~~~~i~~~~~---w~~~f~i~~~~-~~~~~~~~~~ 206 (588)
..|+|.++.|++.|++.++-+ |--.|.+.... .+....+++.
T Consensus 396 IqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 396 IQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred HHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999987533 44455544443 3444444443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.4e-09 Score=105.68 Aligned_cols=185 Identities=12% Similarity=0.066 Sum_probs=139.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
+.+.|+.|.+.+.++..-=++.+..+.++.|++++++.++.++|.....+.+...+..++||+++|| +|.+|++++...
T Consensus 214 v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~ 292 (417)
T COG2223 214 VFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFV 292 (417)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHH
Confidence 3568899999999999888889999999999999999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
..+++..+..+..+...- ++ +.......++...+..|+|.|...-.+|.+-.+ + -|.+.++
T Consensus 293 ~~~~~~~~l~~~~~~~~~-~~-------~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-----~------~G~v~G~ 353 (417)
T COG2223 293 GMALAAALLSLFLTGFGH-GG-------SFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-----E------TGAVTGI 353 (417)
T ss_pred HHHHHHHHHHcccccccc-Cc-------chHHHHHHHHHHHHHhccCcchheeechHHHHh-----h------hhHHHHH
Confidence 999888888776421100 00 001123345555666777777666666654433 2 5778888
Q ss_pred HHHHHHHHHHHHhhhhheeccccc-hhHHHHHHHHHHHHHHHHHHh
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKS-WWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~~ 206 (588)
.....++|...-|..-+...+..| +...|++...+.+++.++.+.
T Consensus 354 vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 354 VGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred HHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666666666655444 888998888887777665443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.1e-09 Score=111.82 Aligned_cols=168 Identities=11% Similarity=-0.019 Sum_probs=126.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++++|.++.+++..++.....+...+....|++..++ +....+.+.+...++..++.++.++++|| +|||+++.++..
T Consensus 227 ~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~ 304 (473)
T PRK10429 227 IYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASI 304 (473)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHH
Confidence 4588999999999999888777666655544444444 56667777777778889999999999999 999999999998
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCC-chhhhhhhhHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDEND-PKGAKALASYFN 160 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~-~~~~~~Rg~~~~ 160 (588)
+.+++.+...+....+ ..+.+.+++.-++.|++.+...+..+++++|..+.++ +..++..|..++
T Consensus 305 ~~~~~~~~~~~~~~~~--------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s 370 (473)
T PRK10429 305 FPVLSCGVLLLMGLAA--------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS 370 (473)
T ss_pred HHHHHHHHHHHHhccC--------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence 8887776654421101 1255667777888999999999999999999987543 222333577899
Q ss_pred HHHHHHHHHHHHHhhhhheeccccc
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKS 185 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~ 185 (588)
...+...+|..+|+.+.|++.+..|
T Consensus 371 ~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 371 VQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999888776654333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.4e-09 Score=109.61 Aligned_cols=171 Identities=12% Similarity=0.010 Sum_probs=130.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHc-hhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYF-KNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
+++|.++...+..++.....++..++.+.|+ ++.+|+++.++++....+.++..++.+++|++.|| +|||+++..+..
T Consensus 255 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~ 333 (438)
T PRK10133 255 ARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYAL 333 (438)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHH
Confidence 4667777777777777777787888888886 56799999999999999999999999999999999 899999999887
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
+..++.++..+..+ . .-+++-.+.|+|.|.+.|+..+...|..+++. +...++
T Consensus 334 ~~~~~~~~~~~~~~-------------------~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l 386 (438)
T PRK10133 334 IAMALCLISAFAGG-------------------H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSF 386 (438)
T ss_pred HHHHHHHHHHHcCC-------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhH
Confidence 77766655554431 1 12456778999999999999999999987432 233333
Q ss_pred HHHHHHHHHHHHhhhhheeccccc-hhHHHHHHHHHHHHHHH
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKS-WWLGFLVSSVANFIGLI 202 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~ 202 (588)
..+ ..+|..++|.+.|++.+..| -|..|+++.+..+....
T Consensus 387 ~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 387 IVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred HhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 322 33577788888888888777 68888877765443333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-08 Score=106.83 Aligned_cols=166 Identities=12% Similarity=0.087 Sum_probs=119.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++|+|.++.++...++...+.. +.+.+..|+.++.--++...+.+.....+...++.+++++++|| +|||+.+.++.+
T Consensus 225 ~~~n~~~~~l~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~ 302 (444)
T PRK09669 225 LLGNSQWRIMFIFNVVLLTAVV-TRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIV 302 (444)
T ss_pred HhCCchHHHHHHHHHHHHHHHH-HHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHH
Confidence 3688999998888887766664 43445555544433234444556666677888899999999999 899999998887
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCc-hhhhhhhhHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDP-KGAKALASYFN 160 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~-~~~~~Rg~~~~ 160 (588)
+..++.+...+.. +.+.+.+++..++.|+|.++..+...++++|..+.++. ..++..|..++
T Consensus 303 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s 365 (444)
T PRK09669 303 AFVILSALIFFIP-----------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFS 365 (444)
T ss_pred HHHHHHHHHHHhC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHH
Confidence 7665444333322 12566778888999999999999999999999974331 12223577888
Q ss_pred HHHHHHHHHHHHHhhhhheeccccch
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKSW 186 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~w 186 (588)
.+.++..+|..+|+.++|++.+..|+
T Consensus 366 ~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 366 TNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999888766544444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-09 Score=107.18 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=128.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCC-hhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFD-LAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++.+|.+....++..+.++.....++.|+.+.+|.+ ..+.+.+.+...++..++.++.|++.|| +|+|+.+.+....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~ 282 (352)
T PF07690_consen 204 KNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILL 282 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred ccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHH
Confidence 4556676777777777788888999999999999999 7999999999999999999999999999 8999998888888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.+...+.... .+....++.-++.|++.|...+....++.|..|+++ ||++.++.
T Consensus 283 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~ 340 (352)
T PF07690_consen 283 LILGALGLLLLPFS----------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLF 340 (352)
T ss_dssp HHHHHHHHCCSHHH----------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHh----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHH
Confidence 88877776655421 145667778889999999999999999999999887 99999999
Q ss_pred HHHHHHHHHHHh
Q 007816 163 LLATTVAAVIGV 174 (588)
Q Consensus 163 ~~~~~iG~~ig~ 174 (588)
....++|..+||
T Consensus 341 ~~~~~~~~~igP 352 (352)
T PF07690_consen 341 NSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC
Confidence 999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=109.47 Aligned_cols=168 Identities=14% Similarity=0.099 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHchhccCCChhhHHH------------HHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHH
Q 007816 13 VFSALENMGFIANGISMVLYFKNEMHFDLAGASN------------TLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFG 80 (588)
Q Consensus 13 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~------------i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~ 80 (588)
...++..+.+|++...++.+++ ++|++..+.+. ......++..++.++++++.|| +|||++++++.
T Consensus 295 ~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~ 372 (502)
T TIGR00887 295 GSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGF 372 (502)
T ss_pred HHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHH
Confidence 3445556778888777776664 67776543221 1223345666788899999999 89999999988
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 81 TLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 81 ~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
.+..++.++.++...... +...+...-+...++.....+....+.+|++|++. |++.++
T Consensus 373 ~~~~~~~~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~~g 431 (502)
T TIGR00887 373 FILTVLFFVLGFAYNHLS---------------THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTAHG 431 (502)
T ss_pred HHHHHHHHHHHHHHHhcc---------------hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHHHH
Confidence 888777766655421000 11111211122223333345667788899999888 999999
Q ss_pred HHHHHHHHHHHHHhhhhheeccc----------cchhHHHHHHHHHHHHHHHH
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTE----------KSWWLGFLVSSVANFIGLIA 203 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~----------~~w~~~f~i~~~~~~~~~~~ 203 (588)
+.+...++|.++++.+.+++.+. .++...|.+.++..+++.++
T Consensus 432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 432 ISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999998887652 34455666666655555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-08 Score=101.79 Aligned_cols=173 Identities=6% Similarity=-0.150 Sum_probs=122.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 83 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~ 83 (588)
+.|.+........+-......+...++.|+++.+|.++.+.|.+.+.+.++..+++++.+++.|+ .++|+.+..+..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~~- 280 (393)
T PRK11195 203 RDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGILM- 280 (393)
T ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHHH-
Confidence 44444444444334444555555666678888999999999999999999999999999999999 8999988877533
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007816 84 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 163 (588)
Q Consensus 84 ~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~ 163 (588)
.+..++.++.+ +.+.+.+..++.|++.|...+...+.+.|..|++. .+|+.++..+
T Consensus 281 ~~~~~~~~~~~-------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~ 336 (393)
T PRK11195 281 GLVVLLMALQH-------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQN 336 (393)
T ss_pred HHHHHHHHHHh-------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHh
Confidence 33333333332 44556677888999999998888888888655432 1689999999
Q ss_pred HHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHH
Q 007816 164 LATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIA 203 (588)
Q Consensus 164 ~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 203 (588)
+..++|..++..+.+.+ ...+=+..+.+.....++++.+
T Consensus 337 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 337 FNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999998887755 3445455555444433334333
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.9e-07 Score=89.43 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=106.1
Q ss_pred chhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCc
Q 007816 33 FKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKG 112 (588)
Q Consensus 33 ~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~ 112 (588)
+.++.|++..|++.+...-.+.+.+..++.|.++|| +|||+..++.++++.++.++.-..
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~~~------------------- 119 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKHSS------------------- 119 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHhcc-------------------
Confidence 346789999999999999999999999999999999 899999999999998877643332
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhhh-ccCCCCCchhhhhhhhHHHHHHHHHH-HHHHHHhhhhheeccccch--hH
Q 007816 113 AIAAYFYGSLYLYSFGCGGNRGTLPAFGA-GQFDENDPKGAKALASYFNFYLLATT-VAAVIGVTGIVYVFTEKSW--WL 188 (588)
Q Consensus 113 ~~~~~l~~~R~l~GiG~g~~~~~~~~~ia-e~~~~~~~~~~~~Rg~~~~~~~~~~~-iG~~ig~~~~~~i~~~~~w--~~ 188 (588)
++..+++||++-|++.....++-.+... |.-....|++ ..+.-++......| +-++++..++-++.+..+. ..
T Consensus 120 -~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~va 196 (354)
T PF05631_consen 120 -NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVA 196 (354)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcc
Confidence 6778999999999999999998887653 3322111211 13333333221122 2223333344455554443 78
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007816 189 GFLVSSVANFIGLIALAA 206 (588)
Q Consensus 189 ~f~i~~~~~~~~~~~~~~ 206 (588)
||...+++..++.++...
T Consensus 197 PF~~a~~~l~~~~~~I~~ 214 (354)
T PF05631_consen 197 PFDAAIVLLAVAAVLILK 214 (354)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 999998887777776554
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-06 Score=88.71 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHH
Q 007816 48 LTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSF 127 (588)
Q Consensus 48 ~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi 127 (588)
.++......+.+++++.+-|. .|.|+.+.+++..+..-.+-.-.. |.+.++.+-.+.|+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~--------------------N~y~~yfssallG~ 114 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP--------------------NSYYLYFSSALLGF 114 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc--------------------chHHHHHHHHHhhh
Confidence 555677778888999999999 899999999988776643322222 56689999999999
Q ss_pred hccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhh
Q 007816 128 GCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVT 175 (588)
Q Consensus 128 G~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~ 175 (588)
|.++.+...-.|.+|..+++. +.+-.++.+.....+..+|..
T Consensus 115 Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi 156 (461)
T KOG3098|consen 115 GAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGI 156 (461)
T ss_pred hHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhH
Confidence 999999999999999998766 777778777777777776644
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.9e-08 Score=100.92 Aligned_cols=170 Identities=8% Similarity=-0.023 Sum_probs=118.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchh---HHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRF---ATCLI 78 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr---~~i~i 78 (588)
++++|.+|.+....++....+|++.++++.|+++ .|++.. .+....+..+... +..++++|| ..|| +....
T Consensus 188 ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~-~~r~~~r~~~~~ 261 (368)
T TIGR00903 188 LAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDR-VARAGLRSIYIR 261 (368)
T ss_pred HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHH-hhhhhhHHHHHH
Confidence 4678999999999999999999999999999965 678764 5555555444444 445888888 6654 33222
Q ss_pred -HHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhh
Q 007816 79 -FGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALAS 157 (588)
Q Consensus 79 -~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~ 157 (588)
...+..++..+.+.+. +....++.-.+.|++.....+...++.+|.+|++. |++
T Consensus 262 ~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt 316 (368)
T TIGR00903 262 AAALLIAAFFLALAFEL-------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGK 316 (368)
T ss_pred HHHHHHHHHHHHHHHcc-------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCc
Confidence 3333333332333222 12233445566777788888888899999999888 999
Q ss_pred HHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHH
Q 007816 158 YFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIAL 204 (588)
Q Consensus 158 ~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 204 (588)
..++.+...++|+..+|.+.+.+.. +-+..|.+-++..+++.+..
T Consensus 317 ~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 317 AAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999899888766553 65666666666555555543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=98.67 Aligned_cols=153 Identities=7% Similarity=-0.053 Sum_probs=109.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
++.|.++..++..++...+.+...+..+.++.+.+|+++.+.+++.+...++..++.+++|++.|| +|||+++.++..+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~ 269 (377)
T PRK11102 191 FRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWI 269 (377)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHH
Confidence 456667777777777666677777777778888899999999999999999999999999999999 8999999998877
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..+..+........+ .+.+.+.++-.+.+.+.+...+....++.|..| +. |++..+..
T Consensus 270 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~ 327 (377)
T PRK11102 270 QFIMGIWLVVSALLD---------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLA 327 (377)
T ss_pred HHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHH
Confidence 655444333221111 133445555556666666667777777777765 45 77888775
Q ss_pred HHH-HHHHHHHHhhhhh
Q 007816 163 LLA-TTVAAVIGVTGIV 178 (588)
Q Consensus 163 ~~~-~~iG~~ig~~~~~ 178 (588)
... ..+|..+++.+++
T Consensus 328 ~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 328 GTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 443 4567777766544
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.8e-08 Score=99.63 Aligned_cols=176 Identities=15% Similarity=0.119 Sum_probs=146.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 83 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~ 83 (588)
+.+++..-++..++-+=+..++.+....|-..++|++..+...+.....+.++++++++|+|.|| ||-|+++.++.++.
T Consensus 250 ~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~ 328 (438)
T COG2270 250 GRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVIL 328 (438)
T ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHH
Confidence 45677777888888888888999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007816 84 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 163 (588)
Q Consensus 84 ~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~ 163 (588)
.+.++..-+... ...+.+.=++.|...|..++.+-+|.++..|+++ -++.|++|.
T Consensus 329 ~~~~~~~~~~~~-------------------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglya 383 (438)
T COG2270 329 SIAALYLIFLEG-------------------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYA 383 (438)
T ss_pred HHHHHHHHHccc-------------------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhh
Confidence 887766655531 1235555678999999999999999999999887 789999999
Q ss_pred HHHHHHHHHHhhhhheeccc-cchhHHHHHHHHHHHHHHHHHH
Q 007816 164 LATTVAAVIGVTGIVYVFTE-KSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 164 ~~~~iG~~ig~~~~~~i~~~-~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
+..-..+.+||++.+.+.+. .+-|..+..-.++..+.++++.
T Consensus 384 ltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 384 LTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence 99999999999988877653 3456666665555555555443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-07 Score=97.30 Aligned_cols=162 Identities=7% Similarity=-0.073 Sum_probs=117.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
++++.+|...+...+....++...+..+.|++ ++|++..+.++......++..++.++++++.|| +|||+.+....+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~ 277 (401)
T PRK11043 200 LKSKTYLGNVLIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVL 277 (401)
T ss_pred HcChhHHHHHHHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHH
Confidence 45566666666666666667777777777765 579999999998888888899999999999999 8999988777666
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.+......... ..+.+.++++-.+.|++.|...+....+..|..| ++ ||+.++++
T Consensus 278 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~ 336 (401)
T PRK11043 278 FAVSVIAIWLASLLS--------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQ 336 (401)
T ss_pred HHHHHHHHHHHHHhc--------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHH
Confidence 666554433221111 1133445666778899999999998888888765 45 89999998
Q ss_pred HHHHHHHHHHHhhhhheeccccchh
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKSWW 187 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~w~ 187 (588)
......+..+++.+.+.+.+.....
T Consensus 337 ~~~~~~~~~~~~~~~g~l~~~~~~~ 361 (401)
T PRK11043 337 NTLQLGLCFLASLLVSALISTPLLT 361 (401)
T ss_pred HHHHHHHHHHHHHHHHHccCCChhH
Confidence 8877777777777777776543333
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=9e-08 Score=104.23 Aligned_cols=144 Identities=14% Similarity=-0.016 Sum_probs=106.7
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCch
Q 007816 34 KNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGA 113 (588)
Q Consensus 34 ~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~ 113 (588)
.+.++.+... ......+....+.++++++.|| +|||+.+.++.++..++.++..+.++.
T Consensus 350 ~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~~----------------- 408 (505)
T TIGR00898 350 LGNLGGNIYL---DLFISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPVD----------------- 408 (505)
T ss_pred ccccCCChHH---HHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCCC-----------------
Confidence 3445555432 2333456677888999999999 899999999998888887777665421
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHH
Q 007816 114 IAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVS 193 (588)
Q Consensus 114 ~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~ 193 (588)
..+..++.-++.+++.+...+...++.+|.+|++. |++.+++......+|.+++|.+.+ + ...++..++.+.
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~ 480 (505)
T TIGR00898 409 LYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLF 480 (505)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHH
Confidence 22345555667778888888899999999999877 999999999999999999999888 3 345667777776
Q ss_pred HHHHHHHHHHHHh
Q 007816 194 SVANFIGLIALAA 206 (588)
Q Consensus 194 ~~~~~~~~~~~~~ 206 (588)
+...+++.++.++
T Consensus 481 ~~~~~~~~~~~~~ 493 (505)
T TIGR00898 481 GGLALLAGILTLF 493 (505)
T ss_pred HHHHHHHHHHHHc
Confidence 6665555554443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.3e-08 Score=104.10 Aligned_cols=180 Identities=15% Similarity=0.182 Sum_probs=156.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccc--hhHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLS--RFATCLIF 79 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~G--Rr~~i~i~ 79 (588)
+++.+.|+.+.+...+..++++.-...++.|.+ ..+++..+++.++++..+...++.++.|+++|+ .. ++....++
T Consensus 294 ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ 371 (509)
T KOG2504|consen 294 LLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLT 371 (509)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHH
Confidence 467788999999999999999988888887777 999999999999999999999999999999999 67 55566666
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
.++..++.+++++++ +++.++.--++.|+..|......+..+.|+...++ ...++
T Consensus 372 ll~~gl~~~~~p~~~-------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~ 426 (509)
T KOG2504|consen 372 LLIAGLARLFLPFAT-------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAY 426 (509)
T ss_pred HHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHH
Confidence 666666777777776 56778999999999999999999999999999887 88999
Q ss_pred HHHHHHHHHHHHHHhhhhheeccccc-hhHHHHHHHHHHHHHHHHHHhhc
Q 007816 160 NFYLLATTVAAVIGVTGIVYVFTEKS-WWLGFLVSSVANFIGLIALAAGK 208 (588)
Q Consensus 160 ~~~~~~~~iG~~ig~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~~~~ 208 (588)
++..++..++.++||.+.|++.+..+ |...|..+....+++...+++..
T Consensus 427 Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 427 GLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999999988666 99999999888877777666544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-07 Score=97.97 Aligned_cols=189 Identities=13% Similarity=0.029 Sum_probs=121.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++|.|..|.+++..++..-+|.+....++.|+++.+. .........+..+...+..+++|+++|| +||||+++++.+
T Consensus 248 vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i 324 (462)
T PRK15034 248 VLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFI 324 (462)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHH
Confidence 4688899999999999766777777788888887663 3333333444567788899999999999 899999999998
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCC------C-------C
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDE------N-------D 148 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~------~-------~ 148 (588)
+..++........ +. +...+.+.+.++-+...++.|.-..++.-++.+++|+ + +
T Consensus 325 ~~~i~~~~~~l~l--p~-----------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~ 391 (462)
T PRK15034 325 FMAIFSALLFLTL--PG-----------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQ 391 (462)
T ss_pred HHHHHHHHHHHHh--cc-----------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhH
Confidence 8877764433221 10 0012455666666555555555555555555555553 0 0
Q ss_pred --chhhhhhhhHHHHHHHHHHHHHHHHhhhhheecc-ccchhHHHHHHHHHHHHHHHHHHh
Q 007816 149 --PKGAKALASYFNFYLLATTVAAVIGVTGIVYVFT-EKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 149 --~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~-~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
...|+.-|...++......+|..+-|.+-+...+ ..++...|++..++.++|..+-+.
T Consensus 392 ~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 392 AQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 0011124556666555556655566644444433 346888888888887777776443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=100.50 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=128.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchh-----HHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRF-----ATC 76 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr-----~~i 76 (588)
+++++.+|.+++..++++++++.+.+.++.|+++.+|++..+.|+..++..+...+..+++|+++|+ +=+| ...
T Consensus 254 i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~-l~~~~ls~t~~r 332 (466)
T KOG2532|consen 254 ILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDR-LTFRILSETTVR 332 (466)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhccCchHhHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999 4441 222
Q ss_pred HHHHHHHHHHH--HHHHHhhccccCCCCCCCCCCcCCc-hhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhh
Q 007816 77 LIFGTLEVLAL--VMLTIQAYSKNLHPPDCGKSSCLKG-AIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAK 153 (588)
Q Consensus 77 ~i~~~i~~ig~--~l~~~a~~~~~~~~~~~~~~~~~~~-~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~ 153 (588)
.+...+...+. .+..++- .+ |++. .....+.++-.+.|+..++...+ ..|.+|. .
T Consensus 333 kifn~i~~~~~ai~l~~l~~-~~-----------~~~~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~apq-~----- 390 (466)
T KOG2532|consen 333 KIFNTIAFGGPAVFLLVLAF-TS-----------DEHRLLAVILLTIAIGLSGFNISGFYKN----HQDIAPQ-H----- 390 (466)
T ss_pred HHHHhHHHHHHHHHHHeeee-cC-----------CCcchHHHHHHHHHHHHcccchhhhHhh----hhhccch-H-----
Confidence 22333322222 2222221 11 1111 22333333333333333333222 2233443 2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhheeccc---cchhHHHHHHHHHHHHHHHHHHh
Q 007816 154 ALASYFNFYLLATTVAAVIGVTGIVYVFTE---KSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 154 ~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~---~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
-+.++++.+...++...++|.+.+++.++ -.|+..|++.+++.+++.+++.+
T Consensus 391 -a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 391 -AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 57999999999999999999999999843 37999999999988877765544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-07 Score=97.29 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=72.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
++++.++..++...+.....+......+.|+++++|++..+.+.+.+...++..++.++.|++.|| +|||+.+.++..+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~ 278 (392)
T PRK10473 200 LLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVL 278 (392)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 345556655555555444444555555667788899999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHhh
Q 007816 83 EVLALVMLTIQA 94 (588)
Q Consensus 83 ~~ig~~l~~~a~ 94 (588)
..++.++..+..
T Consensus 279 ~~~~~~~~~~~~ 290 (392)
T PRK10473 279 FLAAGITLALSP 290 (392)
T ss_pred HHHHHHHHHHHH
Confidence 999888877764
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.5e-07 Score=94.05 Aligned_cols=159 Identities=12% Similarity=0.032 Sum_probs=129.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++++|++..++++.++...++.--.+.+..|.+-.+|.+.............+..++.++..++++| +|+|+++.++.+
T Consensus 232 ~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~ 310 (467)
T COG2211 232 IFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLL 310 (467)
T ss_pred HHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHH
Confidence 4689999999998888877777666666667777799888888888888888888889999999999 999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCC-chhhhhhhhHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDEND-PKGAKALASYFN 160 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~-~~~~~~Rg~~~~ 160 (588)
+.+++.++.-+.+ ..+.+++++..++.++|.+...+...++++|..+-.+ ...+++-|-.++
T Consensus 311 ~~~i~~~~~~f~~-----------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s 373 (467)
T COG2211 311 LLAVGYLLLYFTP-----------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYS 373 (467)
T ss_pred HHHHHHHHHHhhc-----------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHH
Confidence 9999999988876 2378899999999999999999999999999987544 222222466777
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 007816 161 FYLLATTVAAVIGVTGIV 178 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~ 178 (588)
.+.++.=+|.+++..+.|
T Consensus 374 ~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 374 GMTFFRKLGLALAGFIPG 391 (467)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777765443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.9e-07 Score=95.41 Aligned_cols=184 Identities=13% Similarity=0.045 Sum_probs=144.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++++|.++..++..++...+.-...++...|+++.-|.+....+.+.+.-.++-...-++.+++-.| +|-|++++++.+
T Consensus 203 llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~ 281 (400)
T PF03825_consen 203 LLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALV 281 (400)
T ss_pred HhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 4677778777778788777777788888899887666787888888787788888888999999999 899999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
..++=..+.+..++.+ ....+....+-+++|+..|....+...|+.+.+|++. |.+..++
T Consensus 282 ~~~vR~~l~a~~~~~~--------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l 341 (400)
T PF03825_consen 282 AYAVRWLLYAYFSDPW--------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGL 341 (400)
T ss_pred HHHHHHHHHHHhcCCc--------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHH
Confidence 9999888888773211 0112334455677999999999999999999999988 8999999
Q ss_pred HHHH-HHHHHHHHhhhhheeccccc------hhHHHHHHHHHHHHHHHHHHh
Q 007816 162 YLLA-TTVAAVIGVTGIVYVFTEKS------WWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 162 ~~~~-~~iG~~ig~~~~~~i~~~~~------w~~~f~i~~~~~~~~~~~~~~ 206 (588)
+... ..+|..+|..++|++.++++ |...|.+++...++..+++..
T Consensus 342 ~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 342 YSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 8754 57999999999999988766 444555666555444444443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.7e-08 Score=99.46 Aligned_cols=144 Identities=14% Similarity=0.079 Sum_probs=113.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|.+|.+.+..++.....+++.+.++.|+++.+|+++.+.+.+.+.+.+...++.+++|+++|| +|||+.+..+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~ 300 (366)
T TIGR00886 222 FRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLG 300 (366)
T ss_pred HhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHH
Confidence 455678888888888777888888899999999999999999999999999999999999999999 8999998888877
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
...+.++..+.... ..+.+.+++.-++.+++.|...+...++++|..| ++ +|...++.
T Consensus 301 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~~ 358 (366)
T TIGR00886 301 VAMGAFLVVLGLVS---------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGLV 358 (366)
T ss_pred HHHHHHHHHhcCCC---------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHHH
Confidence 77777666654310 0034455566666777777777777788888876 34 88999988
Q ss_pred HHHHHHH
Q 007816 163 LLATTVA 169 (588)
Q Consensus 163 ~~~~~iG 169 (588)
....++|
T Consensus 359 ~~~~~~g 365 (366)
T TIGR00886 359 GAIGNLG 365 (366)
T ss_pred HHhccCC
Confidence 7766655
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-06 Score=92.20 Aligned_cols=162 Identities=10% Similarity=-0.027 Sum_probs=112.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|.+|..+...++...+.....+..+.|+++.+|++..+.+++......+..++.++.+++.|| +||+... +...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~--~~~~ 280 (394)
T PRK11652 204 LSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQ--SVIC 280 (394)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHH
Confidence 455666655555444444444444455667888899999999999888888889999999999999 7843333 2222
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.++........ ..+.+.++++.++.|+|.|...|...++..|.+| ++ ++...++.
T Consensus 281 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~ 339 (394)
T PRK11652 281 CLLAGLLMWIPGWFG--------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALL 339 (394)
T ss_pred HHHHHHHHHHHHHhc--------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHH
Confidence 222222221111000 1134567888899999999999999999999886 34 78888998
Q ss_pred HHHHHHHHHHHhhhhheeccccchhH
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKSWWL 188 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~w~~ 188 (588)
....++|..+++.+++++.....+..
T Consensus 340 ~~~~~lg~~~~~~~~~~~~~~~~~~~ 365 (394)
T PRK11652 340 GGLQNIGSGLAALLSAMLPQTGQFSL 365 (394)
T ss_pred HHHHHHHHHHHHHHHHHccCCchHHH
Confidence 88889999999999888876544443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-06 Score=87.18 Aligned_cols=175 Identities=13% Similarity=0.071 Sum_probs=142.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
+.++|..|.+.+..=+.++.+|.++.+++.++. +-|+|..++|++++...+......+...++++|.-.+|+.....+.
T Consensus 204 vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~ 282 (395)
T COG2807 204 VWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALL 282 (395)
T ss_pred cccCchhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 567888999999999999999999999998876 6789999999999999999999999999999976789999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
.+.+|.+-+.+.+. ...+.. -++.|+|.|...|..-+++.+-++..+ + -+++-++
T Consensus 283 ~~l~G~~G~~~~P~-----------------~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~LSgm 337 (395)
T COG2807 283 LMLVGLVGLLLAPG-----------------QLPILW---ALLLGLGQGGAFPLALTLILLRSSDAA--I---AAALSGM 337 (395)
T ss_pred HHHHHHHHHHHhhh-----------------hHHHHH---HHHHhCccchHHHHHHHHHHhhcCChH--H---HHHHHHH
Confidence 99999988888752 122222 489999999999999999999886433 1 4566667
Q ss_pred HHHHHHHHHHHHhhhhheeccc-cchhHHHHHHHHHHHHHHH
Q 007816 162 YLLATTVAAVIGVTGIVYVFTE-KSWWLGFLVSSVANFIGLI 202 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~-~~w~~~f~i~~~~~~~~~~ 202 (588)
-+-...+=..+||++.|++.+. .+|+.++..-+...++..+
T Consensus 338 aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 338 AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 6666666677889999999764 5788777766555443333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-06 Score=76.66 Aligned_cols=134 Identities=17% Similarity=0.226 Sum_probs=94.9
Q ss_pred hHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHH
Q 007816 349 PLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCI 428 (588)
Q Consensus 349 ~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (588)
..++.++..++..++.|+.+||+. +..+..+..++.+..... .+.+.+....++
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~-----------~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 60 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPV-----------LLVGLFIFVLSTAMFALS---------------SNITVLIIARFL 60 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHH-----------HHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHH
Confidence 445566666666666555565542 455666666555544332 234455666778
Q ss_pred HHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHH
Q 007816 429 FGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYW 508 (588)
Q Consensus 429 ~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~ 508 (588)
.+++.....+..+.+..|.+|++.|+++.++.+....++..+++.+.+.+.+. .++++.|+
T Consensus 61 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------------------~~~~~~~~ 121 (141)
T TIGR00880 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF-------------------LGWRAPFL 121 (141)
T ss_pred HHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc-------------------cchHHHHH
Confidence 88888888899999999999999999999999999999999999888876421 12345677
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 007816 509 FLAIVSVLNLVLYLYAAAW 527 (588)
Q Consensus 509 ~~a~~~~~~~v~~~~~~~e 527 (588)
+.++++++..+..+++.||
T Consensus 122 ~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 122 FLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHHHHHHHhhcCCC
Confidence 7777777777777766654
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-06 Score=92.90 Aligned_cols=187 Identities=16% Similarity=0.042 Sum_probs=135.5
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
+..+.++...++..++....+..-...+-++-|++..++.+++........+..+++.++-|| +|||+.++++..+..+
T Consensus 269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~ 347 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAV 347 (485)
T ss_pred HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHH
Confidence 446677777777777776666666666677889999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccc-cccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGG-NRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~-~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
..+++..+....+... ..-....+++.++..++.+. ..|...-+.+|++|++. |..++++-..
T Consensus 348 ~~~~~~~~~~l~~~~~----------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s~~~~ 411 (485)
T KOG0569|consen 348 ALLLMSIALFLSNSFG----------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQSVATA 411 (485)
T ss_pred HHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHHHHHH
Confidence 9888876654332000 00001234555555544443 36788889999999888 8899988877
Q ss_pred HHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007816 165 ATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCL 210 (588)
Q Consensus 165 ~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~ 210 (588)
...+...+-.+.-..+.+.+|- +.|.+-++...+..+..+...|+
T Consensus 412 ~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 412 VNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcc
Confidence 7777666655555566666664 56666666666666666666665
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=87.65 Aligned_cols=145 Identities=17% Similarity=0.159 Sum_probs=114.1
Q ss_pred HHHHchhccCCCh--hhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 007816 29 MVLYFKNEMHFDL--AGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGK 106 (588)
Q Consensus 29 ~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~ 106 (588)
....+..+++.+. ...+++.+.+.++..++.++.|+++|+ +|||+.+..+.....++.+++++..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~----------- 91 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPN----------- 91 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCcc-----------
Confidence 3334444555444 578999999999999999999999999 79999999888877777777777653
Q ss_pred CCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCC-CCchhhhhhhhHHHHHHH-HHHHHHHHHhhhhheecc--
Q 007816 107 SSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDE-NDPKGAKALASYFNFYLL-ATTVAAVIGVTGIVYVFT-- 182 (588)
Q Consensus 107 ~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~-~~~~~~~~Rg~~~~~~~~-~~~iG~~ig~~~~~~i~~-- 182 (588)
...+.+++.|.++|++.|...+...++++|..|+ ++ |+...+.... ...+|..+++.+++.+..
T Consensus 92 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (338)
T COG0477 92 ------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLLGAL 159 (338)
T ss_pred ------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1467899999999999999999999999999986 33 8888888877 578888888876665544
Q ss_pred ccchhHHHHHHHHHH
Q 007816 183 EKSWWLGFLVSSVAN 197 (588)
Q Consensus 183 ~~~w~~~f~i~~~~~ 197 (588)
..+||..|.+.....
T Consensus 160 ~~~~~~~~~~~~~~~ 174 (338)
T COG0477 160 LWGWRAAFLLAALLG 174 (338)
T ss_pred hcchHHHHHHHHHHH
Confidence 367888666655543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=93.98 Aligned_cols=161 Identities=7% Similarity=0.023 Sum_probs=109.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++|+|.++.++...++..++.....+....|.+-.+| ++...+.+.+.+.++..++.+++++++|| +|+|+.+..+..
T Consensus 224 ~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~ 301 (460)
T PRK11462 224 IWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNA 301 (460)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHH
Confidence 4688888888888888777766666665655555555 34455677778888999999999999999 899999876665
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchh-hhhhhhHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKG-AKALASYFN 160 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~-~~~Rg~~~~ 160 (588)
+..+..++..+.+. .+...+++.-++.|++.++..+...++++|..+-++-|. ++.-|..++
T Consensus 302 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a 364 (460)
T PRK11462 302 LLAVISLAMFFVPM-----------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFA 364 (460)
T ss_pred HHHHHHHHHHHhch-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHH
Confidence 55444444333221 123334555677888888888888889999887443111 111355567
Q ss_pred HHHHHHHHHHHHHhhhhheec
Q 007816 161 FYLLATTVAAVIGVTGIVYVF 181 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~ 181 (588)
...+...+|..+|+.++|++.
T Consensus 365 ~~~f~~Klg~alg~~i~g~iL 385 (460)
T PRK11462 365 GTLFVLKLGLAFGGALIGWML 385 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888877665543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-06 Score=93.04 Aligned_cols=167 Identities=9% Similarity=-0.076 Sum_probs=125.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhc-cCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNE-MHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
+++|.++..++..++......++.+++..|+.+. .+.+....+...+.+..+..++.+++|+++|| +++|+.+.++..
T Consensus 229 ~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~ 307 (410)
T TIGR00885 229 ARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAI 307 (410)
T ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHH
Confidence 4567777777778886666667888888898653 35565666667777788899999999999999 899999999988
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
+.++..++....++ . .....-.+.|+..+.+.|+..+...+..+++. + ..-+.
T Consensus 308 ~~~~~~ll~~~~~~-------------------~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~-~~s~~ 360 (410)
T TIGR00885 308 IGMALCLGSIFAGG-------------------H-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------K-YGAAG 360 (410)
T ss_pred HHHHHHHHHHHcCC-------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------h-hhHHH
Confidence 88888777777542 1 23566778888999999999999999998543 2 11222
Q ss_pred HHHHHHHHHHHHhhhhheecccc------chhHHHHHHHHHHH
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEK------SWWLGFLVSSVANF 198 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~------~w~~~f~i~~~~~~ 198 (588)
.. +..+|.++.|.+.|++.+.. +.+..|.++.+..+
T Consensus 361 l~-~~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 361 LV-MAIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred HH-HHHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence 22 23499999999999998843 47788888776543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.3e-06 Score=90.67 Aligned_cols=172 Identities=11% Similarity=0.029 Sum_probs=120.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++++|.+|...+...+....+++.....+.++++.+|++..+.+++.....++..++..+.+.+.++ .++++.+.....
T Consensus 214 ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~ 292 (413)
T PRK15403 214 VFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKD-PTEPRFIWRAVP 292 (413)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHH
Confidence 4678889998888888888888888888889999999999999999888888888887887776544 344455544455
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
+..+|.++........ +.+++.++++..+.++|.+...|+.....-.. .... +|+..+.
T Consensus 293 ~~~ig~~l~~~~~~~~--------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~------~G~a~a~ 351 (413)
T PRK15403 293 IQLVGLALLIVGNLLW--------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLP------KGTVSAS 351 (413)
T ss_pred HHHHHHHHHHHHHHHc--------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCC------CcHHHHH
Confidence 5566665554432100 11333467888999999999988888533211 1112 6777777
Q ss_pred HHHHHHHHHHHHhhhhheeccccchhHHHHHHHHH
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVA 196 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~ 196 (588)
+......+..+++..++++..+ +=+++|......
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 385 (413)
T PRK15403 352 LNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVV 385 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHH
Confidence 7777777778887888877654 446666655544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-06 Score=89.70 Aligned_cols=179 Identities=11% Similarity=0.066 Sum_probs=144.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccC---CChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMH---FDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLI 78 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i 78 (588)
+++.|++|...+........|+..-+-.+.|.+..+. .++...|.+.+.-....++.-.+..++-+| +|-|+.+++
T Consensus 216 l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lll 294 (412)
T PF01306_consen 216 LFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLL 294 (412)
T ss_dssp HTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHH
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHH
Confidence 4678999998888777777777777778888886654 445667888888888999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhH
Q 007816 79 FGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASY 158 (588)
Q Consensus 79 ~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~ 158 (588)
+..+..+=.+++++++ +.+.+.+.+.+.|+-.+.....+--|+++.+|++- ..+.
T Consensus 295 ag~i~~iRi~~~~~~~-------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~ 349 (412)
T PF01306_consen 295 AGVIMAIRIIGSGFAT-------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATL 349 (412)
T ss_dssp HHHHHHHHHHHHHT---------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHH
T ss_pred HHHHHHHHHHHHhhhc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHH
Confidence 9999999888889887 66789999999999999999999999999999644 4566
Q ss_pred HHH-HHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHh
Q 007816 159 FNF-YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 159 ~~~-~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
..+ +++...+|..+.+.+.|++.++.|.+..|++-+.+.+...++-.+
T Consensus 350 y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 350 YLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence 666 357788899999999999999999998888776665544444333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.6e-05 Score=77.95 Aligned_cols=153 Identities=11% Similarity=0.064 Sum_probs=109.7
Q ss_pred HHHHHHchhc-cCCChhhHHH-HHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007816 27 ISMVLYFKNE-MHFDLAGASN-TLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDC 104 (588)
Q Consensus 27 ~~~~~~~~~~-l~~~~~~~~~-i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~ 104 (588)
+++.+|+.++ .|++..|... +.-...-+.....++...++|. +|.|++++++.+-.++..+++...++
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~s--------- 93 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGTS--------- 93 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHCc---------
Confidence 4566788776 8999888753 3334455566666778899999 89999999999999999999888874
Q ss_pred CCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheecc--
Q 007816 105 GKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFT-- 182 (588)
Q Consensus 105 ~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~-- 182 (588)
...+-+.-++-|++.+. ..+..+|+=-..|+++ -.++.++...+.-+|..++..+|..+.+
T Consensus 94 ----------v~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQllvs~~ 156 (412)
T PF01770_consen 94 ----------VLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLLVSFG 156 (412)
T ss_pred ----------HHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677777888777665 4445555555555444 6678888888888888888777765543
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHh
Q 007816 183 EKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 183 ~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
..+++....+......+++++.++
T Consensus 157 ~~sy~~L~~isl~~~~~a~~~~~f 180 (412)
T PF01770_consen 157 GVSYFQLNYISLASVSLALLIALF 180 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777766655555443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.7e-05 Score=80.22 Aligned_cols=139 Identities=10% Similarity=0.091 Sum_probs=89.8
Q ss_pred ccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchH
Q 007816 340 VPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISL 419 (588)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (588)
...+...+.+-.+-++.-++..+++.++|+-. .+..|+.+..+=++.+.+. .++
T Consensus 406 ~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~-----------v~~lgLa~~~~Rf~~~S~L---------------~n~ 459 (618)
T KOG3762|consen 406 TLFGVVSALCHAGEILFYFFSFKLIEKIGHVN-----------VMYLGLACNVGRFLYYSYL---------------QNP 459 (618)
T ss_pred eeeeehhhhhccchHHHHHHHHHHHHHhcccc-----------eeeehhhHHHHHHHHHHHh---------------cCc
Confidence 33455556666666666666667755555433 2445655555555555444 355
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHH-HHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCC
Q 007816 420 FWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYL-SLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDI 498 (588)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~-~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 498 (588)
|.+++.-++.++....++.+..+|+...+|+++|+.++++... .-.+|--+|+.+.+.+....
T Consensus 460 W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f---------------- 523 (618)
T KOG3762|consen 460 WMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF---------------- 523 (618)
T ss_pred hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee----------------
Confidence 6667778999999999999999999999999999999999864 34555555555555442211
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHH
Q 007816 499 NKNNVNLFYWFLAIVSVLNLVLYLY 523 (588)
Q Consensus 499 ~~~~~~~~f~~~a~~~~~~~v~~~~ 523 (588)
+...+|..+++.|++.++.+..
T Consensus 524 ---g~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 524 ---GARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHH
Confidence 1123577777766666655443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-06 Score=91.89 Aligned_cols=185 Identities=7% Similarity=-0.075 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhh----HHHHHHHHHHHHHHHhhhhH----HhhhcccchhHHH--HH
Q 007816 9 FVYVVFSALENMGFIANGISMVLYFKNEMHFDLAG----ASNTLTNFFGSTFLLCLVGG----FISDTFLSRFATC--LI 78 (588)
Q Consensus 9 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----~~~i~~~~~~~~~~~~l~~G----~l~D~~~GRr~~i--~i 78 (588)
..++....+-...+.-..+.++.|.++..+.+... .+++.+.-.+...+.+++-. ++.||..+.+... .+
T Consensus 275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~ 354 (475)
T TIGR00924 275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTL 354 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 33444444555666666667777777665543222 55666665556666655533 4555422333433 67
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhH
Q 007816 79 FGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASY 158 (588)
Q Consensus 79 ~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~ 158 (588)
|.++..+|.+..+++....+ + +.+.+.+++++..++.++|..+..|+..++++|.+|++. ||++
T Consensus 355 G~~l~~~~~~~~~~~~~~~~--------~--~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g~~ 418 (475)
T TIGR00924 355 GMLFCGASFLTFAASIWFAD--------A--GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MGQM 418 (475)
T ss_pred HHHHHHHHHHHHHHHHhhcC--------C--CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHH
Confidence 88888888777765421110 0 013478899999999999999999999999999999887 9999
Q ss_pred HHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 159 FNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 159 ~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
++++++...+|..+++.+........+|...|....+..++..++++...|
T Consensus 419 ~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 419 LGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888877666668888888877776666665554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.1e-06 Score=83.92 Aligned_cols=170 Identities=14% Similarity=0.042 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHchhc--cC----CChhhHHH-------------HHHHHHHHHHHHhhhhHHhhhc
Q 007816 8 FFVYVVFSALENMGFIANGISMVLYFKNE--MH----FDLAGASN-------------TLTNFFGSTFLLCLVGGFISDT 68 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~----~~~~~~~~-------------i~~~~~~~~~~~~l~~G~l~D~ 68 (588)
-+.++...|.+.++|||++=......+.. .| .-+++... -..+..+..+-|.++.+++-||
T Consensus 328 tlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iver 407 (528)
T KOG0253|consen 328 TLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVER 407 (528)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHH
Confidence 34566667778889999876555443321 11 11111111 1222356778899999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCC
Q 007816 69 FLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDEND 148 (588)
Q Consensus 69 ~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~ 148 (588)
+|||+++-.+.+++.+..++.....+-. ....++..+|++. .+...++++|.-|++|.+-
T Consensus 408 -lGRKkTMal~l~~f~iflfll~~c~~rn---------------~~tvllf~arafi----sg~fqvaYvYtPEVyPTav 467 (528)
T KOG0253|consen 408 -LGRKKTMALSLILFGIFLFLLTTCKTRN---------------AYTVLLFTARAFI----SGAFQVAYVYTPEVYPTAV 467 (528)
T ss_pred -hcchhHHHHHHHHHHHHHHHHHHhcCcc---------------hhHHHHHHHHHHH----hchheEEEEecCcccchhh
Confidence 9999999999999999888877665311 1345677778877 5566778899999999877
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHH
Q 007816 149 PKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 149 ~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
|+...+...-+.-+|.++.|++. +....+=..+..+.....+++.+...
T Consensus 468 ------RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavc 516 (528)
T KOG0253|consen 468 ------RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVC 516 (528)
T ss_pred ------hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHhe
Confidence 99999999999999999999988 33333434555555555555554433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.4e-07 Score=95.03 Aligned_cols=137 Identities=9% Similarity=-0.163 Sum_probs=112.2
Q ss_pred chhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCc
Q 007816 33 FKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKG 112 (588)
Q Consensus 33 ~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~ 112 (588)
..+.+|+++.+.|.+.....++..++.++.+++.+| ++.|+++.++.++..++.+......+-..... | .
T Consensus 279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~---g------i 348 (468)
T TIGR00788 279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF---G------I 348 (468)
T ss_pred EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeecccccc---C------C
Confidence 346799999999999999999999999999999999 89999999999999998876542211110000 0 0
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccc
Q 007816 113 AIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKS 185 (588)
Q Consensus 113 ~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~ 185 (588)
.+.+.+...-++.+++.|........++++..|++. +++.++++....|+|..+++.+++++.++.|
T Consensus 349 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 349 SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 022345666788999999999999999999999988 9999999999999999999999999887766
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.2e-05 Score=74.12 Aligned_cols=159 Identities=11% Similarity=0.045 Sum_probs=115.2
Q ss_pred HHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 007816 27 ISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGK 106 (588)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~ 106 (588)
+.-.+.+++.+|+|+.|...+...-.+|..+| +++|.+.|+ +|.+.++.+|.+...+|..++.++-+-. ++
T Consensus 22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~~~--i~----- 92 (250)
T PF06813_consen 22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVSGR--IP----- 92 (250)
T ss_pred hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCc--cC-----
Confidence 34456888999999999999999999999875 888999999 8999999999999999998887664211 00
Q ss_pred CCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccch
Q 007816 107 SSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSW 186 (588)
Q Consensus 107 ~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w 186 (588)
....|.+.+...+.|.|.+.+.+++-....+.+| ++ ||.+.++.--...+++.+=..+...+.++-.-
T Consensus 93 -----~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~------RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~ 160 (250)
T PF06813_consen 93 -----SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RS------RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS 160 (250)
T ss_pred -----ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cc------cCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence 1256777777888888888887777777778887 45 89999997766666666543443333333233
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 007816 187 WLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 187 ~~~f~i~~~~~~~~~~~~~~ 206 (588)
...+.+.....+++++..++
T Consensus 161 ~fll~la~~~~~v~l~~~~~ 180 (250)
T PF06813_consen 161 SFLLFLAVLPAVVCLVAMFF 180 (250)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 44555555555555544443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.2e-05 Score=80.95 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=121.9
Q ss_pred cccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccch
Q 007816 339 KVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQIS 418 (588)
Q Consensus 339 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (588)
....+.+...+.+.-++..|++..+.+++|+|.+ |.+|++++..+.+++++.. +
T Consensus 105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ip-----------m~~Gl~vmf~sTilFafg~---------------s 158 (464)
T KOG3764|consen 105 NTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIP-----------MVAGLFVMFLSTILFAFGN---------------S 158 (464)
T ss_pred ccchhHHHHHHHHHHHHhcccchhhHHHhccccH-----------HHHHHHHHHHHHHHHHHcc---------------h
Confidence 3445556666677777777777777777787765 8899999999999998873 5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcch-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCC
Q 007816 419 LFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGM-KTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKD 497 (588)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~-rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~ 497 (588)
++.++++-.+++++..+......++.++.+|.+. ||.++|+.-....+|..+++.+.+++++..+.
T Consensus 159 y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk------------- 225 (464)
T KOG3764|consen 159 YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGK------------- 225 (464)
T ss_pred hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCC-------------
Confidence 5678889999999999999999999999999766 69999999999999999999999998765432
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 007816 498 INKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKP 532 (588)
Q Consensus 498 ~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~ 532 (588)
.-.|+++++++++..++-+++.+-+|..+
T Consensus 226 ------~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 226 ------SAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred ------cCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 22499999999999999888877666544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.6e-05 Score=82.73 Aligned_cols=149 Identities=15% Similarity=-0.043 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHhhhh----HHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHH
Q 007816 44 ASNTLTNFFGSTFLLCLVG----GFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFY 119 (588)
Q Consensus 44 ~~~i~~~~~~~~~~~~l~~----G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (588)
.+++.+.-.+...++.++. +++.|| ++..+.+.+|.++..+|.++.+++...+. .++ ..+.++++
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l~~l~f~~l~~~~~~~~---------~~~-~vs~~~~~ 386 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVLCSGAFLVLPLGAKFAN---------DAG-IVSVNWLI 386 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCC-ccCHHHHH
Confidence 3444444443444444444 777777 78888999999999999988887764321 011 23466899
Q ss_pred HHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheec----------cccchhHH
Q 007816 120 GSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVF----------TEKSWWLG 189 (588)
Q Consensus 120 ~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~----------~~~~w~~~ 189 (588)
+..+++|+|.+...|+...++.+.+|++. ||++++.+++...+|+.++..+.+... ...+....
T Consensus 387 ~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (500)
T PRK09584 387 ASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRV 460 (500)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHH
Confidence 99999999999999999999999999887 999999998888888877766553221 11235667
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 007816 190 FLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 190 f~i~~~~~~~~~~~~~~~~~ 209 (588)
|...++..++..++++...|
T Consensus 461 f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 461 FLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 76666665545544444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00012 Score=74.79 Aligned_cols=172 Identities=16% Similarity=0.159 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007816 13 VFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTI 92 (588)
Q Consensus 13 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~ 92 (588)
..-+...++++.=-..+=||-.+.||++..|.-.+++.+..|..++..+.|++..+..+.+++..+++.+.+++..+..+
T Consensus 215 ~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 215 VFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred HHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433444467777899999999999999999999999999999885589999999999999999888877
Q ss_pred hhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHH
Q 007816 93 QAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVI 172 (588)
Q Consensus 93 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~i 172 (588)
+... .+.+.|..+-++.|+|.|......-+..-|+..+++ -|..++.+.....+...+
T Consensus 295 a~~~----------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Gl 352 (403)
T PF03209_consen 295 AGPL----------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGL 352 (403)
T ss_pred HHhc----------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHH
Confidence 7533 267789999999999999999999999999998877 788899888888777777
Q ss_pred Hhhhhheec----------cccchhHHHHHHHHHHHHHHHHHHh
Q 007816 173 GVTGIVYVF----------TEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 173 g~~~~~~i~----------~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
|..++|.+. ...+|-..|.+.++.+++++.++..
T Consensus 353 g~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~ 396 (403)
T PF03209_consen 353 GTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGR 396 (403)
T ss_pred HHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665442 2246788888888888777776654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.4e-05 Score=84.54 Aligned_cols=178 Identities=9% Similarity=-0.058 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhHHHHHHHchhccCCCh----hhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHH-------HHHHHHHH
Q 007816 15 SALENMGFIANGISMVLYFKNEMHFDL----AGASNTLTNFFGSTFLLCLVGGFISDTFLSRFAT-------CLIFGTLE 83 (588)
Q Consensus 15 ~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~-------i~i~~~i~ 83 (588)
..+....+....+.++.|.++..+.+. ...+++.+...+...+..++.|++.|| +|||+. +.+|.++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTH-LGSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCCCCCCcHHHHHHHHHHH
Confidence 334445555555667777765333221 123445444556677888888999999 899973 77787887
Q ss_pred HHHHHHHHHhhc-cccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 84 VLALVMLTIQAY-SKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 84 ~ig~~l~~~a~~-~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
.+|.+..+.... ... . +...+.+.++..-++.|+|.++..|....++.+.+|++. ++.+++.+
T Consensus 357 ~~~~~~~~~~~~~~~~---------~-~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~g~~ 420 (489)
T PRK10207 357 SLGFLTAAAAGMWFAD---------A-QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFILGMW 420 (489)
T ss_pred HHHHHHHHHHHHhhcC---------C-CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHHHHH
Confidence 777655432210 000 0 002356778888999999999999999999999999877 99999999
Q ss_pred HHHHHHHHHHHhhhhheecc----------ccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007816 163 LLATTVAAVIGVTGIVYVFT----------EKSWWLGFLVSSVANFIGLIALAAGKC 209 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~----------~~~w~~~f~i~~~~~~~~~~~~~~~~~ 209 (588)
.+..++|..+|..++.+... .-.+.+.|...++..+++.++++...|
T Consensus 421 ~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 421 FLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877754421 112455666666555555555544333
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.5e-05 Score=60.14 Aligned_cols=71 Identities=14% Similarity=0.038 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHH
Q 007816 11 YVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 83 (588)
Q Consensus 11 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~ 83 (588)
+-..+++...+.-.+.+.++.|++ +.|+|..++|.+.++..+...+++++.|+++|| +||++.++....+.
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHHH
Confidence 334455555555666777777777 599999999999999999999999999999999 89999888776654
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0001 Score=78.64 Aligned_cols=200 Identities=10% Similarity=-0.066 Sum_probs=140.1
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchh-ccCCChh-----hH-----HHHHHHHHHHHHHHhhhhHHhhhcccch-
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKN-EMHFDLA-----GA-----SNTLTNFFGSTFLLCLVGGFISDTFLSR- 72 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~-----~~-----~~i~~~~~~~~~~~~l~~G~l~D~~~GR- 72 (588)
||.+|.++..+++..++++....+...|+.+ .++-++. +. .+....+.+.+.+.+++--++.++ +|+
T Consensus 257 P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~-~g~~ 335 (477)
T TIGR01301 257 PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG-WGAG 335 (477)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccc
Confidence 7899999999999999999998888888864 3443221 11 233334555556777778889999 895
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccc-CCCCCCCC-CCc-CCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCc
Q 007816 73 FATCLIFGTLEVLALVMLTIQAYSKN-LHPPDCGK-SSC-LKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDP 149 (588)
Q Consensus 73 r~~i~i~~~i~~ig~~l~~~a~~~~~-~~~~~~~~-~~~-~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~ 149 (588)
|++..++.++..+|.+...+..++++ ..+ +-+. -.. +.....+..++.-.+.|+..+.......+++++..++++
T Consensus 336 k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~- 413 (477)
T TIGR01301 336 KRLWGIVNIILAICLAATVLVTYVAKNSRY-YDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLG- 413 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcccc-ccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccC-
Confidence 67778888888888777765543211 000 0000 000 001124667778889999999999999999999998543
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccc--hhHHHHHHHHHHHHHHHHHHhhccc
Q 007816 150 KGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKS--WWLGFLVSSVANFIGLIALAAGKCL 210 (588)
Q Consensus 150 ~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~--w~~~f~i~~~~~~~~~~~~~~~~~~ 210 (588)
++.|..++++..++.+...+..+..|.+....+ -...+.+.+++.+++.++.+...|+
T Consensus 414 ---~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 414 ---AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred ---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 116999999999999999888776666544333 4578888888888888887776665
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.003 Score=65.31 Aligned_cols=164 Identities=13% Similarity=0.086 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHchhccC------C-----------------ChhhHHHHHHHHHHHHHHHhhhhHHhhh
Q 007816 11 YVVFSALENMGFIANGISMVLYFKNEMH------F-----------------DLAGASNTLTNFFGSTFLLCLVGGFISD 67 (588)
Q Consensus 11 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~------~-----------------~~~~~~~i~~~~~~~~~~~~l~~G~l~D 67 (588)
-++.-+|+++.|..+.+.+..-+.++.+ . +..-.+.+.-+-.+-+.+.-+++.++-+
T Consensus 5 fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP~fi~ 84 (402)
T PF02487_consen 5 FWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAPFFIH 84 (402)
T ss_pred HHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhHhhhh
Confidence 4456689999999888888777762211 0 1112344555556677777788889999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCC
Q 007816 68 TFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDEN 147 (588)
Q Consensus 68 ~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~ 147 (588)
| ..-+.=+.+..++.++|.++.++++ +.++-++|-++.+++.|.-..+--.+.+ .+++
T Consensus 85 ~-v~y~~Ri~~~~~l~~~g~l~va~~~-------------------~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~- 142 (402)
T PF02487_consen 85 R-VPYWIRILICVALSAAGMLLVAFSP-------------------SVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK- 142 (402)
T ss_pred h-ccchHHHHHHHHHHHHHHhheeecc-------------------chhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc-
Confidence 8 6766666667778888888888876 4557789999999999999999988866 4441
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHhhhhheecc-ccchhHHHHHHHHHHHHHHHHHH
Q 007816 148 DPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFT-EKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 148 ~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~-~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
...+.+......+.++|...--.+.. .++-|..+.+..++-++..+.++
T Consensus 143 ---------~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f 192 (402)
T PF02487_consen 143 ---------SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYF 192 (402)
T ss_pred ---------cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 23455555556666666543323333 23446666665554333333333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.7e-05 Score=81.43 Aligned_cols=152 Identities=12% Similarity=0.151 Sum_probs=115.3
Q ss_pred CCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHH
Q 007816 342 TSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFW 421 (588)
Q Consensus 342 ~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (588)
.+.++....+...++.|+...+.++.=||+. +.+|..+-.++++..++. -.+|.
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gyLadryNR~~v-----------~~vG~~iW~~Av~~~~fs---------------~~Fwq 123 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGYLADRYNRKRV-----------IAVGIFIWTLAVFASGFS---------------NHFWQ 123 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCcceE-----------EeeHHHHHHHHHHHHHHH---------------HHHHH
Confidence 3556666677777888888888555555543 667888777777776654 24566
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCc
Q 007816 422 LSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKN 501 (588)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 501 (588)
+.+.-.+.|+||..+.|....++++.+|...|++..+++++...+|+.+|..+...+.+.+ +
T Consensus 124 ~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~--------~---------- 185 (493)
T KOG1330|consen 124 VLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT--------F---------- 185 (493)
T ss_pred HHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc--------c----------
Confidence 6777789999999999999999999999999999999999999999988877766653322 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCC
Q 007816 502 NVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENCSD 537 (588)
Q Consensus 502 ~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~le~~~ 537 (588)
++++.|+.-+++.++..++..++.+|-+.+..||.+
T Consensus 186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~ 221 (493)
T KOG1330|consen 186 WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVD 221 (493)
T ss_pred ceEEEEEeehHHHHHHHHHHHhhccCcccccccccc
Confidence 134558999999999988888888776544444433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00018 Score=77.07 Aligned_cols=129 Identities=15% Similarity=0.121 Sum_probs=79.7
Q ss_pred HHHHHHHHhhhHhHHhh-hhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHH
Q 007816 351 LFMSILLPLYEFFFVPF-ARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIF 429 (588)
Q Consensus 351 l~~~~~~~l~~~~~~~~-~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (588)
....+..++..++.|++ |||+. +.+|.++++++.++..... .....+.+...+.
T Consensus 56 ~~~~l~~ligG~LaDRilGrrr~-----------iliG~il~~lg~lll~~~~--------------~~~~~~~l~l~li 110 (493)
T PRK15462 56 SLVYVTPILGGFLADKVLGNRMA-----------VMLGALLMAIGHVVLGASE--------------IHPSFLYLSLAII 110 (493)
T ss_pred HHHHHHHHHHHHHHHHccCcHHH-----------HHHHHHHHHHHHHHHHHhh--------------cchhHHHHHHHHH
Confidence 33334444555555555 66653 6678888877765443210 0111122233344
Q ss_pred HHHHHHHhhhhhhhhhcccCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHH
Q 007816 430 GIADMFTFIGLLEFFYKEAPAG--MKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFY 507 (588)
Q Consensus 430 ~~~~~~~~~~~~~~~~e~~P~~--~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f 507 (588)
.++.+...+...+++.|++|++ .|..+.++.+....+|+++++.+.+.+.+. .++++.|
T Consensus 111 ~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~-------------------~Gw~~~F 171 (493)
T PRK15462 111 VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE-------------------YSWAMGF 171 (493)
T ss_pred HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh-------------------hChHHHH
Confidence 4555666677788999999975 799999999988889999999988876431 1335567
Q ss_pred HHHHHHHHHHHHHHHH
Q 007816 508 WFLAIVSVLNLVLYLY 523 (588)
Q Consensus 508 ~~~a~~~~~~~v~~~~ 523 (588)
...++..+++++.+++
T Consensus 172 ~iaaigm~l~li~~~~ 187 (493)
T PRK15462 172 GLAAVGMIAGLVIFLC 187 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7665555555554433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00069 Score=73.69 Aligned_cols=136 Identities=15% Similarity=0.227 Sum_probs=89.6
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHH
Q 007816 344 SIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLS 423 (588)
Q Consensus 344 ~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (588)
.+...+.+...+..+++.++.|.+|||.. ++.|.++..+++++.+.. .+...++
T Consensus 82 w~~~~~~l~~av~~~~~G~LSDlfGRr~~-----------~i~g~~l~vvG~Iv~atA---------------~~~~~~i 135 (599)
T PF06609_consen 82 WFSTAWTLASAVSFPFVGRLSDLFGRRYF-----------FIIGSLLGVVGSIVCATA---------------QNMNTFI 135 (599)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcchHH-----------HHHHHHHHHhHHHHhhcC---------------CcHHHHH
Confidence 34455677777788888888888899975 567777777777766533 3444556
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcch
Q 007816 424 FQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNV 503 (588)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 503 (588)
....+.+++.+.... ....+.|+.|.+.|..+.++.....-+...+++.+...+. .+.+|
T Consensus 136 ag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~--------~~~~W----------- 195 (599)
T PF06609_consen 136 AGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA--------AHSGW----------- 195 (599)
T ss_pred HHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc--------cCCCc-----------
Confidence 667777877655543 4556899999999998887766544444445555554331 11234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 007816 504 NLFYWFLAIVSVLNLVLYLYAA 525 (588)
Q Consensus 504 ~~~f~~~a~~~~~~~v~~~~~~ 525 (588)
.|.|++.++++.++++..++++
T Consensus 196 Rw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 196 RWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred chHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777777666655444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.6e-05 Score=81.31 Aligned_cols=159 Identities=6% Similarity=-0.084 Sum_probs=129.2
Q ss_pred hHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007816 25 NGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDC 104 (588)
Q Consensus 25 v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~ 104 (588)
+.+++--++ ++++..++--|.+...-.++-.+.-++.+++-.+ +||-+++.+++..+.+=.+.....+
T Consensus 390 v~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L~---------- 457 (618)
T KOG3762|consen 390 VFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYLQ---------- 457 (618)
T ss_pred HHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHhc----------
Confidence 344443344 4666666777766666677888888999999999 8999999999999998888888877
Q ss_pred CCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH-HHHHHHHHHHhhhhheeccc
Q 007816 105 GKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL-LATTVAAVIGVTGIVYVFTE 183 (588)
Q Consensus 105 ~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~-~~~~iG~~ig~~~~~~i~~~ 183 (588)
|.|+.+-.-+++|+..|.++.++-+|+++.+||+- |.++.++.+ ....+|-.+|.++||.+.+.
T Consensus 458 ---------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~ 522 (618)
T KOG3762|consen 458 ---------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVER 522 (618)
T ss_pred ---------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence 66788888999999999999999999999999887 777777765 44578888898999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccc
Q 007816 184 KSWWLGFLVSSVANFIGLIALAAGKCL 210 (588)
Q Consensus 184 ~~w~~~f~i~~~~~~~~~~~~~~~~~~ 210 (588)
++-|-.|.+.++..++.++++....+.
T Consensus 523 fg~~ttf~~~giAcl~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 523 FGARTTFRIFGIACLVTLALFISIQLL 549 (618)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999888877777766654443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00016 Score=80.71 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=77.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHH-HHHHHhhhhHHhhhcccc--hhHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFG-STFLLCLVGGFISDTFLS--RFATCLI 78 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~-~~~~~~l~~G~l~D~~~G--Rr~~i~i 78 (588)
++++|.+|...+..++....++++.++++.|+++++|++..+++++.+...+ +..++.+++|++.|| ++ .|+.+.+
T Consensus 326 Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r-~~~~~~~~~~~ 404 (633)
T TIGR00805 326 LLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKK-FKLNVKKAAYF 404 (633)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeee-ecccHHHHHHH
Confidence 5788999999999999999999999999999999999999999999988765 678999999999999 78 5678888
Q ss_pred HHHHHHHHHHHH
Q 007816 79 FGTLEVLALVML 90 (588)
Q Consensus 79 ~~~i~~ig~~l~ 90 (588)
+.++.+++.++.
T Consensus 405 ~~~~~~~~~~~~ 416 (633)
T TIGR00805 405 AICLSTLSYLLC 416 (633)
T ss_pred HHHHHHHHHHHH
Confidence 887777776553
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0001 Score=78.80 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=117.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcc---cchhHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTF---LSRFATCLIF 79 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~---~GRr~~i~i~ 79 (588)
++.+.+|...+.++|....-|++..+++.|+++..|+|..+++.+...+.++..++.+++|+++||. +.||..+...
T Consensus 270 ~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~ 349 (495)
T KOG2533|consen 270 LKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVF 349 (495)
T ss_pred HhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4566799999999999999999999999999997789999999999999999999999999999993 4677766666
Q ss_pred HHHHHH-HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhH
Q 007816 80 GTLEVL-ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASY 158 (588)
Q Consensus 80 ~~i~~i-g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~ 158 (588)
..++.+ |.+.+...... .....+-+....+.+...++....+++...++. | |-..
T Consensus 350 ~~~~~~~g~~~l~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~---k--~~~~ 405 (495)
T KOG2533|consen 350 LCLYAIIGAISLLAAAVL-------------------PGAYGAFLIGPYGLIATAIIALSWTSANLAGNT---K--ALTT 405 (495)
T ss_pred HHHHHHHHHHHHHhhccc-------------------hHHhHHHHhcchhhHHHHHHHHhhccccccchH---H--hHHH
Confidence 666555 43444444311 223333444555566666777777777776544 1 3444
Q ss_pred HHHHHHHHHHH-HHHHhhhhheeccccchhHHHHHHHH
Q 007816 159 FNFYLLATTVA-AVIGVTGIVYVFTEKSWWLGFLVSSV 195 (588)
Q Consensus 159 ~~~~~~~~~iG-~~ig~~~~~~i~~~~~w~~~f~i~~~ 195 (588)
.+.+....+.+ .+.+++.-+..+..+.|...|.....
T Consensus 406 ~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~ 443 (495)
T KOG2533|consen 406 VSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA 443 (495)
T ss_pred HhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence 44444444443 33444444555566788888854443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=79.93 Aligned_cols=179 Identities=11% Similarity=0.011 Sum_probs=128.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhcc-CC-ChhhHHH-HHHHHHHHHHHHhhhhHHhhhcccchhH-----
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEM-HF-DLAGASN-TLTNFFGSTFLLCLVGGFISDTFLSRFA----- 74 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~-~~~~~~~-i~~~~~~~~~~~~l~~G~l~D~~~GRr~----- 74 (588)
+++.++|.++...+|..=+...++.|+. ++.+.+ |. .+++... .++.+.+++++|.+.+|++... .-||+
T Consensus 350 l~~~d~Wll~~~~~cg~g~gl~~~~N~~-qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~-~~~~~~~~r~ 427 (591)
T PTZ00207 350 LKTARLWCLLWSIFCCVGAHFVIIFNAR-FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW-SQKRRAEDRV 427 (591)
T ss_pred HhchhHHHHHHHHHHhhCchheeeecHH-HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH-HHhhcccccc
Confidence 4567899999999998777777777766 444566 66 3333233 7899999999999999999844 33333
Q ss_pred ----HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCch
Q 007816 75 ----TCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPK 150 (588)
Q Consensus 75 ----~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~ 150 (588)
.+.+..+ ..++.++.+++. | ...++++-++.|++.|...++.++.++|+|- ++
T Consensus 428 prt~~l~~~~~-~~~~~lll~~~~--p-----------------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~-- 484 (591)
T PTZ00207 428 PITIALFIPSV-CIITMLTLFLTL--P-----------------KAALPLPYFIAAFANGFMAATIALVTRTIFA-KD-- 484 (591)
T ss_pred chhHHHHHHHH-HHHHHHHHHHHC--C-----------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cc--
Confidence 2333333 777777777764 2 1369999999999999999999999999999 77
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH-hhhhheeccc-------------cchhHHHHHHHHHHHHHHHHHHhhccc
Q 007816 151 GAKALASYFNFYLLATTVAAVIG-VTGIVYVFTE-------------KSWWLGFLVSSVANFIGLIALAAGKCL 210 (588)
Q Consensus 151 ~~~~Rg~~~~~~~~~~~iG~~ig-~~~~~~i~~~-------------~~w~~~f~i~~~~~~~~~~~~~~~~~~ 210 (588)
-|+.+++......+|+.+= -.+.|.+.+. .-++.+|.+.....+++.++-....-|
T Consensus 485 ----~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R 554 (591)
T PTZ00207 485 ----PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ 554 (591)
T ss_pred ----hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence 7888888888888888763 1233433211 127889999888877776665544433
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00037 Score=71.64 Aligned_cols=146 Identities=16% Similarity=0.061 Sum_probs=112.5
Q ss_pred HHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcc---cchhHHHHH-HHHHHHHHHHHHHHhhccccCCC
Q 007816 26 GISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTF---LSRFATCLI-FGTLEVLALVMLTIQAYSKNLHP 101 (588)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~---~GRr~~i~i-~~~i~~ig~~l~~~a~~~~~~~~ 101 (588)
.+..++|++ .+|.+..-.+.+-.+--+...+.+++.|..+||. |||||-++. +.....++.++...+.++..++
T Consensus 52 lsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~l- 129 (498)
T KOG0637|consen 52 LSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLL- 129 (498)
T ss_pred hccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHh-
Confidence 445556654 6788877777777777788889999999999986 888776554 5555666777888887665433
Q ss_pred CCCCC-CCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhhee
Q 007816 102 PDCGK-SSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYV 180 (588)
Q Consensus 102 ~~~~~-~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i 180 (588)
|.+ ..|.++-....++++-.+.=+..-.....+-++.+|...+++. ..| +.+++..++.+|..+|+..++|.
T Consensus 130 --gd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~---~~~--Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 130 --GDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK---KTR--ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred --cCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh---hhc--cchhHHHHHHhcceeeeeccccc
Confidence 222 4467778888999999999999999999999999999987662 112 88899899999999998888754
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00045 Score=70.11 Aligned_cols=160 Identities=14% Similarity=0.064 Sum_probs=122.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|.++.-.+.+|+--=.=-.+-+++..|+.+..|++..+++..++.+..+..+|.+++-++..| +--.|.+.+.+.+
T Consensus 233 ~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~ 311 (422)
T COG0738 233 FQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALI 311 (422)
T ss_pred HhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHH
Confidence 455666666666666433334456678889998899999999999999999999999999999999 8888888888777
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
.++-.+..+++.+. .-+.+-++.|+-.+.+.|++.+...+..+.+. +.-+..
T Consensus 312 ~ill~~~~~l~~g~--------------------v~~~~l~~ig~F~simfPTIfslal~~l~~~t--------s~~s~~ 363 (422)
T COG0738 312 AILLLLAVALIGGV--------------------VALYALFLIGLFNSIMFPTIFSLALKNLGEHT--------SVGSGL 363 (422)
T ss_pred HHHHHHHHHHhcCh--------------------HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc--------ccccee
Confidence 66666666666531 34556778999999999999999999999443 222333
Q ss_pred HHHHHHHHHHHhhhhheeccccchhHHHH
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKSWWLGFL 191 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~w~~~f~ 191 (588)
-.+..+|.++.|.+-|++.+..+-...+.
T Consensus 364 l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 364 LVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred eeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 33556888899999999999888776666
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00063 Score=64.88 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=71.0
Q ss_pred HchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCC
Q 007816 32 YFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLK 111 (588)
Q Consensus 32 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~ 111 (588)
|+.+.+++...++|.+.-+-...+.+...+.|-++|| .|||+.- +.+++-.+++++....|
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKrac----vtycitYiLsCiTKhSp-------------- 122 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRAC----VTYCITYILSCITKHSP-------------- 122 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccce----eeehHHHHHHHHhhcCC--------------
Confidence 4556788889999998888888888889999999999 8999964 45555566666665333
Q ss_pred chhHHHHHHHHHHHHHhccccccchhh-hhhccC
Q 007816 112 GAIAAYFYGSLYLYSFGCGGNRGTLPA-FGAGQF 144 (588)
Q Consensus 112 ~~~~~~l~~~R~l~GiG~g~~~~~~~~-~iae~~ 144 (588)
++-.+++||++-|+......++-.+ +++|--
T Consensus 123 --qYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 123 --QYKVLMVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred --ceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 5667999999999999887776665 455554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.3e-07 Score=96.64 Aligned_cols=184 Identities=14% Similarity=-0.006 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHH
Q 007816 7 NFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 86 (588)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig 86 (588)
.++..+....+..++.+........++.+..+.++. -.......+...++.+++.++.|| +|||++++++..+..++
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-ccccccccccccccccc
Confidence 344555555555556655565556666667777765 222233345566777888899999 99999999999988888
Q ss_pred HHHHH-HhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhcc-ccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 87 LVMLT-IQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCG-GNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 87 ~~l~~-~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g-~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
.+.++ ......+ ++ +..+...+.... +..++.+ ...+....+.+|.+|.+. |.+..++.+.
T Consensus 330 ~~~~~~~~~~~~~--------~~--~~~~~~~i~~~~-l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~~ 392 (451)
T PF00083_consen 330 SLILGIIFFLGVS--------SS--SWWSILSIVFLA-LFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSYA 392 (451)
T ss_pred ccccccccccccc--------cc--cccccccceeee-eccccccccccccccccccccccccc------cccccccccc
Confidence 77775 1110000 00 000121222222 2222222 344666688999999888 9999999988
Q ss_pred HHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007816 165 ATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCL 210 (588)
Q Consensus 165 ~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~ 210 (588)
...++..+++.+..++.+..+-...+.+..+..++..++.++..|+
T Consensus 393 ~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE 438 (451)
T PF00083_consen 393 VGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE 438 (451)
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHhheeEEEee
Confidence 8888888888887777766553344455445444455554444444
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0016 Score=58.28 Aligned_cols=103 Identities=13% Similarity=0.113 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHH
Q 007816 48 LTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSF 127 (588)
Q Consensus 48 ~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi 127 (588)
.++......+.+++++.+-++ +|.|+++.+|.+.+.+-.+..-.. +.+.++.+-.+.|+
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~~--------------------~~~~l~~~s~l~G~ 101 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFYP--------------------NSYTLYPASALLGF 101 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhh--------------------hHHHHHHHHHHHhh
Confidence 344455667777888888999 899999999998888644332211 56789999999999
Q ss_pred hccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 007816 128 GCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGI 177 (588)
Q Consensus 128 G~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~ 177 (588)
|.+..+++...|+.+..++++ |++-.+++....+.+.++|....
T Consensus 102 ~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 102 GAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred hhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998766 88888888877777777775543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.15 Score=53.74 Aligned_cols=189 Identities=12% Similarity=-0.074 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
+..+.++...++.+++--++--..+.|+.+-++-+---.+...-+-.+...++.+.-|...|| .-|.+++..+.++.-+
T Consensus 2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~ 80 (432)
T PF06963_consen 2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNL 80 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHH
Confidence 456788999999999988888777888876554333333333333455677777777888999 8999998888777555
Q ss_pred HHHHHHHh----hccccCCCCCCCCCCcCCchhHHHHHHHHHHHH-HhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 86 ALVMLTIQ----AYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYS-FGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 86 g~~l~~~a----~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G-iG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
+.++.+.. -..+. ....+..-...+++.-.+.| ++-=......-+.--|+...=..+++..+.+..+
T Consensus 81 sv~~s~~~~~~l~~~~~--------~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA 152 (432)
T PF06963_consen 81 SVAASCALFLLLLSYPS--------SSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNA 152 (432)
T ss_pred HHHHHHHHHHHHHhCCc--------cccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHH
Confidence 44333322 11110 00000111222222222222 1111111111112222221110111222556666
Q ss_pred HHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHH
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIA 203 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 203 (588)
...=.--+--++||...|.+.+..|.+....+.++..+++..+
T Consensus 153 ~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 153 TMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 6555556677899999999988788887777666666666665
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.17 Score=54.10 Aligned_cols=159 Identities=13% Similarity=0.037 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHchhccCC-----ChhhHHHHHHHHHHHHHHH-hhhhHHhhhcccchhHHHHHHH
Q 007816 7 NFFVYVVFSALENMGFIANGISMVLYFKNEMHF-----DLAGASNTLTNFFGSTFLL-CLVGGFISDTFLSRFATCLIFG 80 (588)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~~~~~i~~~~~~~~~~~-~l~~G~l~D~~~GRr~~i~i~~ 80 (588)
.++.+.++.+|--+.|+ +.--++|.+.. +.....++.+...+.+.+. .++-+++++| ++|++.+.+-.
T Consensus 8 k~~~~~l~fF~il~~Y~-----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~~~ 81 (472)
T TIGR00769 8 KFLPLFLMFFCILFNYT-----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYTVI 81 (472)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHHHH
Confidence 35555566666555555 33345666655 3356777777765555555 7888999999 89999998877
Q ss_pred HHHHHHHHHHHHh--hccccCCCCCCCCCCcCC-----ch---------hHHHHHHHHHHHHHhcccccc-chhhhhhcc
Q 007816 81 TLEVLALVMLTIQ--AYSKNLHPPDCGKSSCLK-----GA---------IAAYFYGSLYLYSFGCGGNRG-TLPAFGAGQ 143 (588)
Q Consensus 81 ~i~~ig~~l~~~a--~~~~~~~~~~~~~~~~~~-----~~---------~~~~l~~~R~l~GiG~g~~~~-~~~~~iae~ 143 (588)
..+++-.++.++. +..+.++|.. .||+ +. +.|...+.-+...+=.....+ .--.+..|+
T Consensus 82 ~~F~~~f~lF~~vl~p~~~~~~p~~----~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi 157 (472)
T TIGR00769 82 SPFLGFFALFAFVIYPLSDLLHPTA----LADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQI 157 (472)
T ss_pred HHHHHHHHHHHHHHhcchhhcCCcH----HHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777666555544 1111111100 0111 00 112222222223322233333 556788999
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheec
Q 007816 144 FDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVF 181 (588)
Q Consensus 144 ~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~ 181 (588)
+.+++ -.|.++++....|+|..+|+.+..++.
T Consensus 158 ~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 158 TTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred CCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99777 679999999999999999998877765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00096 Score=72.82 Aligned_cols=143 Identities=12% Similarity=-0.061 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 007816 12 VVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLT 91 (588)
Q Consensus 12 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~ 91 (588)
+...++..++.+-...+-...+-+..|.+... .+...+......++.+++.++.|| +|||+.++.+.....++.++.+
T Consensus 300 ~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~~m~~~~~~~~ 377 (513)
T KOG0254|consen 300 LLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAAGMSICLVILA 377 (513)
T ss_pred HHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHHHHHHHHHHHH
Confidence 33344444443333333333334445545332 444444566677777888999999 8999999999999999999888
Q ss_pred HhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 007816 92 IQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTV 168 (588)
Q Consensus 92 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~i 168 (588)
.......... .|........+...-+....-..+..|....+.+|.+|.+- |+++.++......+
T Consensus 378 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~~~s~~~~~n~~ 442 (513)
T KOG0254|consen 378 VVGVFALYYP------NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSKGASLAVAVNWL 442 (513)
T ss_pred HHHHHhccCC------CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------HhhhHHHHHHHHHH
Confidence 7754332100 01112233333333334444444455566678899999777 77777775444333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0048 Score=64.92 Aligned_cols=101 Identities=12% Similarity=0.195 Sum_probs=77.2
Q ss_pred chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHH
Q 007816 347 VIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQY 426 (588)
Q Consensus 347 ~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (588)
..+.+..++.+.+.|++ +-|+. +.++++.-++..++.++. .+...+.+.-
T Consensus 73 ysYal~qIp~GlLaDrl----G~K~v-----------L~l~~l~Wsl~t~L~~fa---------------~Sl~~L~i~R 122 (511)
T TIGR00806 73 YSHLAVLVPVFLLTDYL----RYKPV-----------LVLQALSFVCVWLLLLLG---------------TSVWHMQLME 122 (511)
T ss_pred HHHHHHHHHHHHHHHHh----CchHH-----------HHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 33444555555555554 65542 556666666666666554 3566788888
Q ss_pred HHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007816 427 CIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDII 478 (588)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~ 478 (588)
++.|++++... ..+.+++.-+|++.|++++|+......+|.++++.+.+.+
T Consensus 123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999999998874
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0019 Score=50.91 Aligned_cols=68 Identities=9% Similarity=0.001 Sum_probs=63.0
Q ss_pred HHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhc
Q 007816 27 ISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAY 95 (588)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~ 95 (588)
+.+.+.+.++.++|.++.+++.+.-++|+.+|++...++.++ ..+++.+..+.++..+..+.+++.++
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457789999999999999999999999999999999999999 78899999999999999999998864
|
Note that many members are hypothetical proteins. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00076 Score=69.43 Aligned_cols=178 Identities=10% Similarity=0.050 Sum_probs=120.1
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChh--------hHHHHHHHHHHH-HHHHhhhhHHhhhcccchhHH
Q 007816 5 TCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLA--------GASNTLTNFFGS-TFLLCLVGGFISDTFLSRFAT 75 (588)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------~~~~i~~~~~~~-~~~~~l~~G~l~D~~~GRr~~ 75 (588)
-+-.+..++.-|+-..++|+..-+...-+++ +++.+. ..+....+.... ..-|.+++.++.|+ +|||+.
T Consensus 303 g~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~i 380 (538)
T KOG0252|consen 303 GKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYI 380 (538)
T ss_pred HHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHH
Confidence 3455566666777777888777666655541 221111 122222332233 33377788889999 899999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhh
Q 007816 76 CLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKAL 155 (588)
Q Consensus 76 i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~R 155 (588)
.+.|.+++.+-.+..+.+.+... +...-..++.+.-++.-+|=+...- .+-+|.+|..- |
T Consensus 381 q~~GF~~~~i~~~~~~~~y~~~~-----------~~~Gf~v~y~l~~ff~NFGPn~ttf---ivpaE~FParv------R 440 (538)
T KOG0252|consen 381 QLMGFFIMTIFFFVIAGPYNQLE-----------NTIGFVVLYSLTFFFGNFGPNATTF---IVPAEIFPARV------R 440 (538)
T ss_pred HHhhHHHHHHHHHHHcCCccccc-----------ccCceeehHHHHHHHHhcCCCceeE---EeehhhchHHH------h
Confidence 99999999988877777653110 1122234444555555566554444 44569999766 9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhheecc-----ccchhHHHHHHHHHHHHHHHHH
Q 007816 156 ASYFNFYLLATTVAAVIGVTGIVYVFT-----EKSWWLGFLVSSVANFIGLIAL 204 (588)
Q Consensus 156 g~~~~~~~~~~~iG~~ig~~~~~~i~~-----~~~w~~~f~i~~~~~~~~~~~~ 204 (588)
+.+-++...+.=+|+.+|.+.-.++.+ ..+.+..|++....+++..++-
T Consensus 441 ~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T 494 (538)
T KOG0252|consen 441 STCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT 494 (538)
T ss_pred hhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee
Confidence 999999999999999999888888888 7788999999888877666653
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0079 Score=65.78 Aligned_cols=128 Identities=17% Similarity=0.176 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHH
Q 007816 349 PLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCI 428 (588)
Q Consensus 349 ~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (588)
..++.++.+++.|++ |||+. +..++++..++-+..++ +.+++...+.-++
T Consensus 131 ~~vG~~i~g~lsD~~----GRk~~-----------~~~~~~~~~i~~~~~a~---------------a~~~~~~~~~Rfl 180 (521)
T KOG0255|consen 131 VLVGSLIFGPLSDRF----GRKPV-----------LLVSLLLFIIFGILTAF---------------APNYWMFLIFRFL 180 (521)
T ss_pred HHHHHhhheehHhhc----ccHHH-----------HHHHHHHHHHHHHHHHH---------------hCcHHHHHHHHHH
Confidence 345555556666664 88874 44555555555443333 2567777888889
Q ss_pred HHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHH
Q 007816 429 FGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYW 508 (588)
Q Consensus 429 ~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~ 508 (588)
.|++........+.+..|..+++.|+.+..+ ....+.++.+++.....+.+ +| .+.++
T Consensus 181 ~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----------~W-----------r~~~~ 238 (521)
T KOG0255|consen 181 SGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR----------DW-----------RWLFW 238 (521)
T ss_pred HHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh----------hH-----------HHHHH
Confidence 9999999999999999999999999999999 77888888888777766543 24 34566
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 007816 509 FLAIVSVLNLVLYLYAAAWYK 529 (588)
Q Consensus 509 ~~a~~~~~~~v~~~~~~~e~~ 529 (588)
+....+++.++. +++.+|.+
T Consensus 239 ~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 239 IISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred HHHHHHHHHHHH-HHccCcCh
Confidence 666666555554 45555654
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.54 Score=47.85 Aligned_cols=154 Identities=11% Similarity=0.059 Sum_probs=92.5
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhh-----cccchhHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISD-----TFLSRFATCLIFG 80 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D-----~~~GRr~~i~i~~ 80 (588)
++++.+++.++.... -+|+.. ..+++-+.-|.|-++.+.....+ -=+-.-+++..+-| | +||||.-++=
T Consensus 31 ~~illLl~LYllQGi-P~GL~~-~iP~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~-~GrrksWvvp- 104 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGI-PLGLIG-AIPLLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKR-FGRRKSWVVP- 104 (510)
T ss_pred hhHHHHHHHHHHcCC-chhHhh-hhHHHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHh-hccccceeee-
Confidence 456666666666543 467777 55555555566655555433222 12334467888889 8 9999986544
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 81 TLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 81 ~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
.-+.+|.++..++..++..+.+..+.+ +...+...-++.-++++.---++-...-.+..+++ .|-+-+
T Consensus 105 ~q~llG~~mllLs~~v~~~~g~ng~~p------~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~------lgyaST 172 (510)
T KOG3574|consen 105 CQYLLGLFMLLLSYLVDRGLGGNGGLP------NVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN------LGYAST 172 (510)
T ss_pred hHHHHHHHHHHHhhCCCcccccCCCCc------chHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh------cCchhH
Confidence 345677777777754433221111111 22233334456667777666677777767777666 677777
Q ss_pred HHHHHHHHHHHHHhhhh
Q 007816 161 FYLLATTVAAVIGVTGI 177 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~ 177 (588)
......++|.++|..+-
T Consensus 173 ~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 173 CQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHHHhhhHHhhccee
Confidence 77778888888886654
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.035 Score=58.74 Aligned_cols=130 Identities=9% Similarity=0.100 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHH
Q 007816 382 QRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTY 461 (588)
Q Consensus 382 ~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~ 461 (588)
+.++.|.+++.++.++++..+... +-..+++.+..++.|++.+..... =.|++...-.+.|.++.+...
T Consensus 103 ~Pli~s~ii~~~g~llY~~l~~~~----------~~~~y~mL~~R~l~Gvg~~n~a~l-R~Y~a~~s~~~dR~rA~a~~~ 171 (488)
T KOG2325|consen 103 KPLIVSFLIAIIGNLLYLALAYVP----------NGVKYLMLVARILTGVGVGNFAVL-RAYIADASTVEDRPRAFAATS 171 (488)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcc----------cchHHHHHHHHHHcCcCcccHHHH-HHHHHhccCccchHHHHHHhh
Confidence 337899999999999986654221 125677888899988885543222 344444333444555555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhccc
Q 007816 462 LSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWY 528 (588)
Q Consensus 462 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~ 528 (588)
....++..+|+.+-+.+..+. ..|+.....+.-+-|.-.=|+.+.++++.+++.+++.+|-
T Consensus 172 ~~~vlg~ilGp~~q~~f~~Lg------~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 172 GGFVLGIILGPTIQLAFTPLG------EKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred hHHHHHHHHhHHHHHHHhhhc------CCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence 555566666665555443322 2244322111112233345677778888888888887764
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.022 Score=57.64 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHc-hhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccc-hhHHHHHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIANGISMVLYF-KNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLS-RFATCLIFGTLEVL 85 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~G-Rr~~i~i~~~i~~i 85 (588)
.|.+.....+...-.|....+-..++ ...+|+++.|.|-+.+.-.++..+.++.-....|+..| -+-.+..+.....=
T Consensus 262 ~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP 341 (451)
T KOG2615|consen 262 VLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVP 341 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHH
Confidence 34444433333333333334444444 56799999999999998888877777777888888333 33344444444444
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLA 165 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~ 165 (588)
..++...+. ....++++-.+-.+..+...+....++....|+++ ||.+.++....
T Consensus 342 ~~llls~~~-------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~Gi~~Sl 396 (451)
T KOG2615|consen 342 AFLLLSLAR-------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNGIFRSL 396 (451)
T ss_pred HHHHHhccc-------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHHHHHHH
Confidence 445555554 33579999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHhhhhheecc
Q 007816 166 TTVAAVIGVTGIVYVFT 182 (588)
Q Consensus 166 ~~iG~~ig~~~~~~i~~ 182 (588)
..++=++||.++|.+.+
T Consensus 397 ~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 397 GALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHhhhhhhheeEE
Confidence 99999999999987754
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0092 Score=61.65 Aligned_cols=131 Identities=13% Similarity=0.027 Sum_probs=96.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
.+++++|..+.+.....--.+|++.+.+..-+. .-|+++..+|.+.....++..+++++.|.++||.-.-|.++++...
T Consensus 262 ~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~ 340 (480)
T KOG2563|consen 262 CFKNRQFIILAICYGIGLGLFNSLSTLLNLALC-PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYL 340 (480)
T ss_pred HHcCccHHHHHHHHhhhHHHHHHHHHHhhhccc-cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 368899999999888888888888876664443 4567778999999999999999999999999994334455555555
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCC
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDEND 148 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~ 148 (588)
...+++...-..+..+ ...+.++..-.+.|+..-...|...-+..|..-|..
T Consensus 341 ~~~v~~~~l~~~t~~~---------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~ 392 (480)
T KOG2563|consen 341 FALVGTLMLLTCTLFL---------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA 392 (480)
T ss_pred HHHHHHHHHHHhhccC---------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC
Confidence 5555542222222111 134456777788899999999999999999986655
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.011 Score=62.89 Aligned_cols=150 Identities=11% Similarity=0.072 Sum_probs=116.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHH-HHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhH-HhhhcccchhHHHHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGI-SMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGG-FISDTFLSRFATCLIFGT 81 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G-~l~D~~~GRr~~i~i~~~ 81 (588)
+.|..+.+++..++...--.+=.. ....|++.+++++..+.+...+.......++.++.. .+.-. +|-|+++.+|+.
T Consensus 238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~ 316 (463)
T KOG2816|consen 238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLL 316 (463)
T ss_pred CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHH
Confidence 445555555554443333222222 345778889999999999999998888888888877 66666 899999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
...++.++.++++ +.|+.+.+.++.+ ..+...|+..++.+-+..+++ +|+.+++
T Consensus 317 ~~~~~~~~~af~~-------------------~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~~e------~g~v~~~ 370 (463)
T KOG2816|consen 317 SEFLQLLLFAFAT-------------------ETWMMFAAGVVVA-LAGIVFPAIRAFASILVSPEE------QGKVFGI 370 (463)
T ss_pred HHHHHHHHHHHhc-------------------cchhhhHHHHHHH-hhcchhHHHHhHHHhhccccc------ccchhhH
Confidence 9999999999998 4456676666554 457888999999999999888 9999999
Q ss_pred HHHHHHHHHHHHhhhhhee
Q 007816 162 YLLATTVAAVIGVTGIVYV 180 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i 180 (588)
....-.+...++|.+-+.+
T Consensus 371 is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 371 ISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred HHHHHHHhhhhhHHHHHHH
Confidence 9999999998888876544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.011 Score=62.10 Aligned_cols=136 Identities=13% Similarity=0.111 Sum_probs=95.5
Q ss_pred HHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHH
Q 007816 351 LFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFG 430 (588)
Q Consensus 351 l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (588)
+..++++++.||+ +|+|+. ++.|.++++++-++++... ..+...+.+..++..
T Consensus 76 ~t~i~GG~laDr~---LG~~~t-----------I~lGail~~iGh~~L~~~~-------------~~~~~gl~i~L~~I~ 128 (498)
T COG3104 76 LTPIIGGWLADRV---LGTRRT-----------IVLGAILMAIGHLVLAISS-------------VSGPGGLYIGLALII 128 (498)
T ss_pred HHHHHHHHHHHHh---cchhHH-----------HHHHHHHHHHHHHHHhccc-------------cccccHHHHHHHHHH
Confidence 3455667777777 355543 7899999999998887541 023445666777778
Q ss_pred HHHHHHhhhhhhhhhcccCcch--hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHH
Q 007816 431 IADMFTFIGLLEFFYKEAPAGM--KTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYW 508 (588)
Q Consensus 431 ~~~~~~~~~~~~~~~e~~P~~~--rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~ 508 (588)
+|.++.-+....++.|+.|++. |-.+.++++..-++|+++++.+.+.+.+ + .+++..|-
T Consensus 129 iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~--------~-----------~g~~~gF~ 189 (498)
T COG3104 129 VGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI--------N-----------YGWHVGFG 189 (498)
T ss_pred hccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH--------h-----------hCHHHHHH
Confidence 9999999999999999988433 5556666777778999999988887743 1 13455677
Q ss_pred HHHHHHHHHHHHHHHhhccccccc
Q 007816 509 FLAIVSVLNLVLYLYAAAWYKYKP 532 (588)
Q Consensus 509 ~~a~~~~~~~v~~~~~~~e~~~~~ 532 (588)
..++-..++.+.++..-+..++..
T Consensus 190 ~aavGm~~gl~~f~~~~r~~~~~~ 213 (498)
T COG3104 190 LAAVGMIIGLVIFLLGRRHVKGIG 213 (498)
T ss_pred HHHHHHHHHHHHHHHccchhcCCC
Confidence 777777777777766655555543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.07 Score=51.86 Aligned_cols=89 Identities=11% Similarity=0.033 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHH
Q 007816 382 QRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTY 461 (588)
Q Consensus 382 ~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~ 461 (588)
..+.+|.+...++........... .+..++|.+.+..++.+.+....+........+.+|. .||++.|+..
T Consensus 67 ~~l~iG~~~~~~GY~~~~l~~~~~--------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk 137 (250)
T PF06813_consen 67 VVLLIGAVLGFVGYGLLWLAVSGR--------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILK 137 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc--------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhh
Confidence 346688888877777665543221 1124566666655666666666666666666688996 5999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 007816 462 LSLSFGYFLSSAFVDIIN 479 (588)
Q Consensus 462 ~~~~l~~~i~~~~~~~~~ 479 (588)
....+++.+-+.+...+.
T Consensus 138 ~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 138 GFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 999999988877766553
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.19 Score=54.72 Aligned_cols=172 Identities=11% Similarity=-0.007 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHH--
Q 007816 11 YVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV-- 88 (588)
Q Consensus 11 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~-- 88 (588)
+.+..++..++..+.=-...-.+...+|-+..+.+.++++|++|..+|+.++|+++++ .-|+.... -..+-+++.+
T Consensus 19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~~~-e~~i~l~~~~~~ 96 (521)
T PRK03612 19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFVAV-ELLLALLGGLSA 96 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHH-HHHHHHHHHHHH
Confidence 3444444455555444445556666789999999999999999999999999998866 34443322 2112111111
Q ss_pred -HHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHH
Q 007816 89 -MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATT 167 (588)
Q Consensus 89 -l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~ 167 (588)
+...+..+.. .....++...++.++-.|+..|...-+..+... ++ -|+..+-.|....
T Consensus 97 ~ll~~~~~~~~--------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~nt 155 (521)
T PRK03612 97 LILYAAFAFQG--------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADY 155 (521)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHh
Confidence 1111110000 011223344456677777777766665544322 11 3466677778888
Q ss_pred HHHHHHhhhhheecc-ccch-hHHHHHHHHHHHHHHHHHH
Q 007816 168 VAAVIGVTGIVYVFT-EKSW-WLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 168 iG~~ig~~~~~~i~~-~~~w-~~~f~i~~~~~~~~~~~~~ 205 (588)
+|+++|.++.+++.- .+|- +..+.+..+-.++++++++
T Consensus 156 lGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~ 195 (521)
T PRK03612 156 LGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLW 195 (521)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 899888888776643 4553 4444444433444433333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0014 Score=71.31 Aligned_cols=176 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHH-HHHHHhhhhHHhhhcc-cchhHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFG-STFLLCLVGGFISDTF-LSRFATCLIF 79 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~-~~~~~~l~~G~l~D~~-~GRr~~i~i~ 79 (588)
+++++.+...++...++.+...|..++++.|++.+|+.++.+++.+.+...+ +..+|.++||++..|+ ++.|+++.+.
T Consensus 301 Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~ 380 (539)
T PF03137_consen 301 LLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFC 380 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999988655 7889999999999984 3466666666
Q ss_pred HHHHHHHHHHHHHh-------hccccCCCCC---------CC-----------------CCCcCCc--hhHHHHHHHHHH
Q 007816 80 GTLEVLALVMLTIQ-------AYSKNLHPPD---------CG-----------------KSSCLKG--AIAAYFYGSLYL 124 (588)
Q Consensus 80 ~~i~~ig~~l~~~a-------~~~~~~~~~~---------~~-----------------~~~~~~~--~~~~~l~~~R~l 124 (588)
.+..+++.++.... ..+.-+..++ |. ...|+.. .+...|++..++
T Consensus 381 ~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~ 460 (539)
T PF03137_consen 381 IVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFI 460 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHH
Confidence 66665555441100 0011111111 11 0124333 235556666666
Q ss_pred HHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHH-HHHHHHHhhhhheeccc
Q 007816 125 YSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLAT-TVAAVIGVTGIVYVFTE 183 (588)
Q Consensus 125 ~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~-~iG~~ig~~~~~~i~~~ 183 (588)
.-+-.+...+.....+-...|+++ |..+.++..+.. -+|.+-||++-|.+.+.
T Consensus 461 ~~~~~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 461 LSFFTFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 656556655555566668888888 889999877554 56778888887777653
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.37 E-value=2.8 Score=47.01 Aligned_cols=312 Identities=11% Similarity=-0.025 Sum_probs=174.0
Q ss_pred CChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHH
Q 007816 39 FDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYF 118 (588)
Q Consensus 39 ~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 118 (588)
...........++.....+..+.....+|-.-|+-..+..-....+++.+...+..- +. .+...+....
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a----------~~~~~~~~~~ 85 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GA----------IPSSGHPLHD 85 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-cc----------CcccccchHH
Confidence 344456667788899999999999999999666666777777777777777766652 11 1111123445
Q ss_pred HHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccc-hhH-------HH
Q 007816 119 YGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKS-WWL-------GF 190 (588)
Q Consensus 119 ~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~-w~~-------~f 190 (588)
.++-+...++.++..+.-|.+.+++.+..+ ...+.+..++++++.+.+.+.+ +++..+..... +-. -+
T Consensus 86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiGS-lis~~i~~~l~~~~~~fg~~~~~~ 161 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAGS-LISTIITPILRGDVGCFGCQDCYP 161 (654)
T ss_pred HHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccccCcchH
Confidence 567777889999999999999999998655 5555679999999999988775 55555544332 321 22
Q ss_pred HHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhcccccccCCCcchhhh
Q 007816 191 LVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTWERIPHANQFRCL 270 (588)
Q Consensus 191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 270 (588)
+..+++.++.++.++.+...++..++++.......++...... +. .
T Consensus 162 ~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~---------------------a~-------------~ 207 (654)
T TIGR00926 162 LAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVT---------------------AL-------------R 207 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHH---------------------HH-------------H
Confidence 3344445555555554433322222111110000000000000 00 0
Q ss_pred hhhccCCCCCCCCCCccccc--ccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHhhhcCCCCCcccccCCcccch
Q 007816 271 DKAAIMPKDSAVAAPWRVCT--VTQVEEVKILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVI 348 (588)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (588)
.+.... .+..+..|.+.. +...++.+...+.+.+......+++...++......+....+...+.+.........+
T Consensus 208 ~~~~~~--~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~~~l 285 (654)
T TIGR00926 208 KRFSTR--SEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQPDQM 285 (654)
T ss_pred HhhccC--CcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecCHHHH
Confidence 000000 000012232211 1223345667777777766666666666655555555555544322121222345566
Q ss_pred hHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 007816 349 PLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVI 404 (588)
Q Consensus 349 ~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 404 (588)
+.+-.++..++...+.+++-++.. +...+.+.+.-+.+.+.++.+.++.....
T Consensus 286 q~~n~L~IIil~Pi~~~~lyp~l~---~~~~~ls~l~k~~iG~~la~la~~va~~v 338 (654)
T TIGR00926 286 QVVNPLLILIFVPIFDYIVYPAIA---KCGTRFTSLRKMAVGGLLAALSFFVAALV 338 (654)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHH---hcCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776666666652 12234566666777776666666655433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.19 Score=52.37 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcch---hhHHHHH
Q 007816 383 RVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGM---KTLASSF 459 (588)
Q Consensus 383 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~---rg~~~~~ 459 (588)
.+.+|.+++.+|.+++....... .. ....+...+.+..++.++|.++.-|+...+..++++++. |..+-..
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~---~~---~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~ 76 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPP---SL---PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSS---SC---------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcc---hh---hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHH
Confidence 36678888888888765542110 00 112344567777788899999999999999999998773 4445556
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 007816 460 TYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYK 531 (588)
Q Consensus 460 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~ 531 (588)
+....++|.+++....+++++ + .+++..|.+.++..+++.+.++.-.+.++.+
T Consensus 77 fY~~in~G~~~~~~~~~~i~~--------~-----------~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQ--------N-----------YGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHH--------C-----------S-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred HHHHHhhhhHhhcccchhhcc--------c-----------cchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 677778888888877777753 1 2344568787777788877776655555554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.53 Score=47.33 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=64.4
Q ss_pred hhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhh
Q 007816 61 VGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFG 140 (588)
Q Consensus 61 ~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~i 140 (588)
..=-++|. .--|+++++-.+-.+...++..+.++..+ +-+ .-+-.|..+++--+|-
T Consensus 61 pvFlLTD~-lrYKPvivlq~ls~v~~w~~lv~g~sV~~-------------------mQv----lE~FyG~~tAaEIAYy 116 (433)
T KOG3810|consen 61 PVFLLTDY-LRYKPVVVLQALSGVPVWIMLVFGPSVKA-------------------MQV----LEFFYGPATAAEIAYY 116 (433)
T ss_pred HHHHHhhh-hhcceeeeeeccchhHHHHHHHhcCCchh-------------------eee----ehhhcChHHHHHHhhh
Confidence 33458998 78899988888888888888888876543 222 2233466666666666
Q ss_pred hccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheecc
Q 007816 141 AGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFT 182 (588)
Q Consensus 141 ae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~ 182 (588)
+++..+-+|+. +.+..+....+.-.|-..|...+-.+.+
T Consensus 117 sYIYs~Vd~~~---Yqrvt~y~RaA~L~g~~~g~vlaQlLvs 155 (433)
T KOG3810|consen 117 SYIYSKVDPEM---YKRVTGYCRAAFLVGKFVGSVLAQLLVS 155 (433)
T ss_pred heeeeecCHHH---HHHHHHHhHHHHHHHhHHHhHHHHHHhh
Confidence 66665444332 7788888888888888888776655543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.076 Score=56.53 Aligned_cols=136 Identities=11% Similarity=-0.049 Sum_probs=90.6
Q ss_pred hhccC---CChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcC
Q 007816 34 KNEMH---FDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCL 110 (588)
Q Consensus 34 ~~~l~---~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~ 110 (588)
++.++ +|+...+.+..+..++..++..+....--+ ..-|+++.+..++.++..+....-..-... +.|++
T Consensus 244 ~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~-~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~---~~Gi~--- 316 (433)
T PF03092_consen 244 TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSN-WSWRRIFVVTTLVSVLASLFDLLLVTRWNL---DLGIP--- 316 (433)
T ss_pred eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHhcccEEEEEEEee---eeCcC---
Confidence 45566 899888988877777878877776444334 477888888887777766554322110000 00000
Q ss_pred CchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccc
Q 007816 111 KGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKS 185 (588)
Q Consensus 111 ~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~ 185 (588)
+.+..+..-++..+-.+...-....+++|+.|+.. -|..+++.....|+|..++..++..+.+.++
T Consensus 317 ---d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 317 ---DQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred ---CeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11333444455666666666667778999999877 7899999999999999999988877765443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.15 Score=56.52 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=67.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHH-HHHHHhhhhHHhhhcc-cchhHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFG-STFLLCLVGGFISDTF-LSRFATCLIF 79 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~-~~~~~~l~~G~l~D~~-~GRr~~i~i~ 79 (588)
++++|.+...+++..++...+-|..++++.|+.++++.+...+..+.++..+ +..+|.++||++.-|+ +.-|.+..+.
T Consensus 388 ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~ 467 (735)
T KOG3626|consen 388 LLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFV 467 (735)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999987654 5788999999998883 3344444443
Q ss_pred HHH
Q 007816 80 GTL 82 (588)
Q Consensus 80 ~~i 82 (588)
.+.
T Consensus 468 ~~~ 470 (735)
T KOG3626|consen 468 IVC 470 (735)
T ss_pred HHH
Confidence 333
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.79 E-value=11 Score=40.15 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007816 419 LFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDI 477 (588)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~ 477 (588)
-++.++..+++++.++........+..+..+++.|..+..+..+.-.+|-.+|+.+.-.
T Consensus 372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567788999999999889999999999999999999999888888888776544
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=93.62 E-value=2.2 Score=45.17 Aligned_cols=154 Identities=10% Similarity=-0.002 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHH
Q 007816 10 VYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVM 89 (588)
Q Consensus 10 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l 89 (588)
..-+...+-.++..+.-+.+.-|++.. |+++...|..=+.-.+....+.++..++-+| +|-.|+=+++.......-.+
T Consensus 262 las~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~ 339 (432)
T PF06963_consen 262 LASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLAL 339 (432)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHH
Confidence 333343444455556666778888877 9999999999999999999999999999999 89999999888877665555
Q ss_pred HHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHH
Q 007816 90 LTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVA 169 (588)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG 169 (588)
+..+-..+. . + . +..+...|+.+-++.=+|.=.+--++.-++.|..|+++ ||...+......++-
T Consensus 340 ~v~~~~~~~--~-----~-~-~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf 404 (432)
T PF06963_consen 340 CVVSFWAPG--S-----P-F-SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLF 404 (432)
T ss_pred HHHHHhcCC--C-----C-c-hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHH
Confidence 544322111 0 0 0 12355566666666667777777888888999999877 999999998888888
Q ss_pred HHHHhhhhhee
Q 007816 170 AVIGVTGIVYV 180 (588)
Q Consensus 170 ~~ig~~~~~~i 180 (588)
-++.+..+-..
T Consensus 405 ~ll~~~~~ii~ 415 (432)
T PF06963_consen 405 ELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHhcc
Confidence 88886655433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=93.24 E-value=4.7 Score=36.08 Aligned_cols=60 Identities=7% Similarity=0.096 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007816 419 LFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDII 478 (588)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~ 478 (588)
.+.+++.-++.|++....+...-.++.+...++.|++..+++......+.++|..+.-.+
T Consensus 89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888999999999999999999999999999999999888888878777665544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=92.83 E-value=1.3 Score=46.04 Aligned_cols=143 Identities=6% Similarity=-0.045 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHH
Q 007816 11 YVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVML 90 (588)
Q Consensus 11 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~ 90 (588)
+.+.+++|.+.-.|+..-+ .+.++..--..+..+...+|.+|.+++.--.-++ | +-|-+.+-+-.++..+-.+++
T Consensus 252 L~lVY~aEY~InqGv~~tl--~fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--r-ir~lwils~LQ~~nl~~~~l~ 326 (402)
T PF02487_consen 252 LFLVYFAEYFINQGVAPTL--LFPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--R-IRRLWILSLLQVINLVFLLLQ 326 (402)
T ss_pred HHHHHHHHHHHHhchHHHh--cCCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--e-hhhHHHHHHHHHHHHHHHHHH
Confidence 4456666633333333321 1222333334677888888888888876543332 3 333333333333333333444
Q ss_pred HHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 007816 91 TIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAA 170 (588)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~ 170 (588)
+.-..++ +.+..++--+..|+-.|+.+......+.|..++++ |...++...+.-++|.
T Consensus 327 s~~~fip----------------si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI 384 (402)
T PF02487_consen 327 SWYRFIP----------------SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGI 384 (402)
T ss_pred HHHHHhh----------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHH
Confidence 4333322 56777778889999999999999999999888776 9999999999999999
Q ss_pred HHHhhhhhee
Q 007816 171 VIGVTGIVYV 180 (588)
Q Consensus 171 ~ig~~~~~~i 180 (588)
.++..++-.+
T Consensus 385 ~lAgll~l~l 394 (402)
T PF02487_consen 385 LLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHH
Confidence 9997776444
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.07 E-value=4.3 Score=43.12 Aligned_cols=136 Identities=13% Similarity=0.049 Sum_probs=85.3
Q ss_pred chhccCCChhhHHHHHHH-HHHHHHHHhhhhHHhh---hcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 007816 33 FKNEMHFDLAGASNTLTN-FFGSTFLLCLVGGFIS---DTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSS 108 (588)
Q Consensus 33 ~~~~l~~~~~~~~~i~~~-~~~~~~~~~l~~G~l~---D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~ 108 (588)
.++..+.+....-.+.+. ...+..++.+..+.++ ++ +||++++.++..+..++.++.-+....-.=..|+ .++.
T Consensus 269 ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t-~~~~ 346 (461)
T KOG3098|consen 269 FTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPT-DSPP 346 (461)
T ss_pred hhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccccccCCCCCC-cccc
Confidence 344445444443333333 3445555556666665 55 8999999999999999888776653110000000 0011
Q ss_pred cCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 007816 109 CLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGI 177 (588)
Q Consensus 109 ~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~ 177 (588)
-+-+.++....+--++.|+|-+...+....++++.+ |++ |..+++++-+--.+++.++.+..
T Consensus 347 ~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~------~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 347 LLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDD------RAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred cccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCc------hHHHHHHHHHHHHHHHHHHhhhh
Confidence 111234545555667899999999999999999999 555 77888887777777777765443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.30 E-value=1.9 Score=45.22 Aligned_cols=166 Identities=15% Similarity=0.030 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCC
Q 007816 298 KILTRMMPILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSG 377 (588)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~ 377 (588)
+.+++...+.+..+++|..-.+|.+++.++ .+.... -.+......++..++..|++....|+.-.|+.+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk------~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR---- 100 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHK------WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR---- 100 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcc------cccccccccccccceeccccccccccccccccc----
Confidence 455566666777788888888888888654 344332 123334444556666666665555444444432
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC--CccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhH
Q 007816 378 ITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETP--PKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTL 455 (588)
Q Consensus 378 ~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~ 455 (588)
++.-+..+.++.+++++++++..........+.. ....+....++.+.+.=++.-.+..+.=++..+.+-...|.+
T Consensus 101 --RRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~ 178 (498)
T KOG0637|consen 101 --RRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT 178 (498)
T ss_pred --ccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh
Confidence 2233677888889999888876544322221111 111233333444444555554555556677777766555556
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH
Q 007816 456 -ASSFTYLSLSFGYFLSSAFVD 476 (588)
Q Consensus 456 -~~~~~~~~~~l~~~i~~~~~~ 476 (588)
+.+.+.++..+||.++-...+
T Consensus 179 ~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 179 RANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred ccchhHHHHHHhcceeeeeccc
Confidence 999999999999999866654
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=91.18 E-value=22 Score=37.30 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007816 417 ISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINA 480 (588)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~ 480 (588)
.+.+++.+.-++.|++... -.+.++|++...|++.=-++++......-+|.+++..++.++..
T Consensus 92 ~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 92 TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666544 55667899999998888899998888888888888888887643
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.60 E-value=2.8 Score=40.73 Aligned_cols=141 Identities=12% Similarity=0.063 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcccchhH---HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHH
Q 007816 44 ASNTLTNFFGSTFLLCLVGGFISDTFLSRFA---TCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYG 120 (588)
Q Consensus 44 ~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~---~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 120 (588)
-|.+.+.|++++.+|+-+..++..+ .|.+ .+.+...+.+. .+++...++.-+ | .+++...-++
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~--s~~~ve~ymqivf~vs~a-~l~Lpilt~~vs--P---------~kes~~~s~i 349 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSR--SSPKVESYMQIVFLVSIA-ALLLPILTSSVS--P---------SKESPSESLI 349 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhc--CCcccchHHHHHHHHHHH-HHHHHHHHhccC--C---------CcCCchHHHH
Confidence 3899999999999999998888777 3333 33333333322 233322222110 1 1234445577
Q ss_pred HHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHH
Q 007816 121 SLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIG 200 (588)
Q Consensus 121 ~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~ 200 (588)
+-.+.-.++|...|...-+=++..|++. |...++++.+..|+=.-++-..-..-....+-|.+|.++.++..++
T Consensus 350 ~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a 423 (454)
T KOG4332|consen 350 GFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVA 423 (454)
T ss_pred HHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHH
Confidence 8888889999999999999999999877 9999999988888755444221111112245689999998887766
Q ss_pred HHHH
Q 007816 201 LIAL 204 (588)
Q Consensus 201 ~~~~ 204 (588)
.+..
T Consensus 424 ~i~~ 427 (454)
T KOG4332|consen 424 SILQ 427 (454)
T ss_pred HHHH
Confidence 5543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.24 E-value=28 Score=35.58 Aligned_cols=144 Identities=11% Similarity=-0.004 Sum_probs=76.8
Q ss_pred CcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHH
Q 007816 343 SSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWL 422 (588)
Q Consensus 343 ~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (588)
+.+.+......++.++++..+.|++|||+. .+.-.++.+++.+ . +. ...+..+
T Consensus 72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~-----------cl~~cily~~scl----~--k~----------~~~~~~L 124 (354)
T PF05631_consen 72 AILFVAGFASSAIFGTFVGSLADRYGRKKA-----------CLLFCILYSLSCL----T--KH----------SSNYPVL 124 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHH-----------HHHHHHHHHHHHH----H--Hh----------ccccHHH
Confidence 334445566777788888888888898874 1222222233222 1 11 2345567
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhh-c----ccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCC
Q 007816 423 SFQYCIFGIADMFTFIGLLEFFY-K----EAPAGMKTLASSFTY-LSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGK 496 (588)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~-e----~~P~~~rg~~~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~ 496 (588)
.+.-++.|++..+.+...=+|.. | -+|++..+.-.+..+ ..|.+-.+.+..+...+.+..+ .
T Consensus 125 ~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~--------~---- 192 (354)
T PF05631_consen 125 LLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG--------F---- 192 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC--------C----
Confidence 77778888888777666555443 2 356555444444333 2334444444444444332111 0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007816 497 DINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKY 530 (588)
Q Consensus 497 ~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~ 530 (588)
+....|.....+.+++.+++....+|-.|
T Consensus 193 -----g~vaPF~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 193 -----GPVAPFDAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred -----CCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence 11224777777777777766655555433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=89.15 E-value=7.3 Score=41.52 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=25.4
Q ss_pred hhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007816 443 FFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDII 478 (588)
Q Consensus 443 ~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~ 478 (588)
++..+..++.++-|+...+..+.+|.+++..++-.+
T Consensus 142 WALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 142 WALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred hhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 444456777788888888888888888876655444
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=86.19 E-value=5 Score=42.67 Aligned_cols=151 Identities=11% Similarity=-0.016 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhc-cCCChh-hHHHHHHHHHHHHHHHhhhhHHhhhcccchh-HHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNE-MHFDLA-GASNTLTNFFGSTFLLCLVGGFISDTFLSRF-ATCLIFGTL 82 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~-~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr-~~i~i~~~i 82 (588)
|..|...+..++..+....+.+......+.+ .+.++. ..-.+..+|+++..+|..+..+. .+ -++| +.+.+.++.
T Consensus 269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~-~~-p~~~~~~l~i~s~~ 346 (437)
T TIGR00939 269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKF-MW-PDEDSRWLPILSFL 346 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhhee-Ee-eCCCccchHHHHHH
Confidence 3455555555555444444444443333322 123332 44567777899999998876554 12 2333 133333333
Q ss_pred HHH---HHHHHHHhh--ccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhh
Q 007816 83 EVL---ALVMLTIQA--YSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALAS 157 (588)
Q Consensus 83 ~~i---g~~l~~~a~--~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~ 157 (588)
=++ -.++|..-+ ..|.++ .+-+..++.-++.|+..|...+....+..+..++++ |..
T Consensus 347 R~iFIPlf~lcn~~~~~~~p~~~------------~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~ 408 (437)
T TIGR00939 347 RVLFIPLFLLCNYPQRSRLPVFF------------PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REV 408 (437)
T ss_pred HHHHHHHHHHhcCCccccCCeee------------cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHH
Confidence 222 222332221 000011 244566677999999999999999999999987655 556
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 007816 158 YFNFYLLATTVAAVIGVTG 176 (588)
Q Consensus 158 ~~~~~~~~~~iG~~ig~~~ 176 (588)
+-.+..++.++|..+|..+
T Consensus 409 aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 409 AGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666777887777554
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=85.50 E-value=58 Score=35.20 Aligned_cols=160 Identities=10% Similarity=0.018 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHchhccCC---ChhhHHHHHHHHHH-HHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 7 NFFVYVVFSALENMGFIANGISMVLYFKNEMHF---DLAGASNTLTNFFG-STFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~~~~~i~~~~~~-~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
-++.+.++.+|-.+.|- +.--++|.+=. +...+..+-....+ .+.+...+-.+++++ ++|.+++.+....
T Consensus 25 k~~~l~~m~f~i~f~y~-----~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~-~s~~~lFy~~~~~ 98 (491)
T PF03219_consen 25 KFLPLALMFFFILFNYT-----ILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNR-LSREKLFYIIIIP 98 (491)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 35555555555433332 23333443322 34444444443333 456667778999999 8999998877776
Q ss_pred HHHHHHHHHHh--hccccCCCCCCCCCCcCC--------------chhHHHHHHHHHHHHHhcccccc-chhhhhhccCC
Q 007816 83 EVLALVMLTIQ--AYSKNLHPPDCGKSSCLK--------------GAIAAYFYGSLYLYSFGCGGNRG-TLPAFGAGQFD 145 (588)
Q Consensus 83 ~~ig~~l~~~a--~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~R~l~GiG~g~~~~-~~~~~iae~~~ 145 (588)
+..-.++.++- +.-..++|+ +.|++ --+.|.+.+.-+..-+=.....+ .--.+..|+++
T Consensus 99 F~~fF~~f~~vlyP~~~~lhp~----~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt 174 (491)
T PF03219_consen 99 FLGFFALFAFVLYPNRDILHPD----AFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT 174 (491)
T ss_pred HHHHHHHHHHHHhhchhhcCCC----HHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 66655554433 111111111 00111 00111111111111111112222 23567789998
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHhhhhheecc
Q 007816 146 ENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFT 182 (588)
Q Consensus 146 ~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~~~~~i~~ 182 (588)
.++ -.|.+.++....|+|..++.....++.+
T Consensus 175 ~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 175 VEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777 6799999999999999999887776665
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=85.11 E-value=59 Score=34.94 Aligned_cols=56 Identities=7% Similarity=0.050 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHh-hhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007816 424 FQYCIFGIADMFTF-IGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIIN 479 (588)
Q Consensus 424 ~~~~~~~~~~~~~~-~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~ 479 (588)
+.|+...+...... -..|.++.|+...++-.+..++.....+++..+++.+...+.
T Consensus 133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333333 478999999999999999999999999999999988876654
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.34 E-value=10 Score=37.83 Aligned_cols=116 Identities=9% Similarity=0.069 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHchhccC--------------CChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchh
Q 007816 8 FFVYVVFSALENMGFIANGISMVLYFKNEMH--------------FDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRF 73 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--------------~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr 73 (588)
...-++.-+|++++|..+.+..-.-+.++.+ -.....|.+..+=.+-+.+.-+....+-|| |=--
T Consensus 14 ~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~r-fpf~ 92 (409)
T KOG3880|consen 14 AVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHR-FPFG 92 (409)
T ss_pred chHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhh-cccc
Confidence 3344566789999988777776666655544 011113455555455556666666778888 4333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhcc
Q 007816 74 ATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQ 143 (588)
Q Consensus 74 ~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~ 143 (588)
+-+.+...+.+.|.++.+++. +.++-++|-.+..+|.|.-..+--.+-+.+
T Consensus 93 ~Ri~~~v~~sa~s~~lVafs~-------------------s~~~sL~GV~~aSissGlGEiTFL~lss~Y 143 (409)
T KOG3880|consen 93 FRIALVVLLSALSFFLVAFSN-------------------SVPMSLLGVVFASISSGLGEITFLALSSRY 143 (409)
T ss_pred hHHHHHHHHHhcceEEEEecc-------------------chhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence 334445566667777777776 455788999999999998877777665544
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.01 E-value=12 Score=41.20 Aligned_cols=130 Identities=19% Similarity=0.243 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc-c---------CCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcch-
Q 007816 384 VGIGLVLSAVSMTVAGLVEVIRRNAF-N---------ETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGM- 452 (588)
Q Consensus 384 ~~~G~~l~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~- 452 (588)
+.++.++..+++.+..........-. . ....+......+...+.+.++|.+..-|+..++-.++++...
T Consensus 107 I~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~ 186 (571)
T KOG1237|consen 107 INIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDP 186 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCc
Confidence 66777777777665554433321111 1 111112223344555566677888899999999999998222
Q ss_pred ---hh--HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcc
Q 007816 453 ---KT--LASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAW 527 (588)
Q Consensus 453 ---rg--~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e 527 (588)
+. .....+.+...++..++..+...++ ++.+|... |-+.+++++++++++....+-
T Consensus 187 ~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq--------~~~~w~lg-----------f~i~~~~~~lai~iF~~g~~~ 247 (571)
T KOG1237|consen 187 VEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ--------DNVGWKLG-----------FGIPTVLNALAILIFLPGFPF 247 (571)
T ss_pred chhhCcccchhHHHHHHHHHHHHHHHHHHhhh--------hcccceee-----------ccHHHHHHHHHHHHHHcCcee
Confidence 22 4555666677777777766666553 45678755 778888888888887777776
Q ss_pred ccccc
Q 007816 528 YKYKP 532 (588)
Q Consensus 528 ~~~~~ 532 (588)
++.+.
T Consensus 248 y~~~~ 252 (571)
T KOG1237|consen 248 YRYKK 252 (571)
T ss_pred EEeeC
Confidence 66555
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.41 E-value=12 Score=37.65 Aligned_cols=114 Identities=6% Similarity=-0.053 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
|++|.+-...++-...|-|. .++......++|. ...+.+ .+.-...+++.+.+-.+ +|-|+++.++...+..
T Consensus 29 knv~i~s~~fl~~f~a~~gl-~nlq~~vn~~lg~--~sl~~~----y~~l~~s~m~~~~~Ir~-~g~K~tm~lav~~Y~l 100 (390)
T KOG3097|consen 29 KNVLILSIAFLLTFTAYLGL-QNLQTSVNYDLGT--VSLGAL----YLSLIDSSMFMPLLIRF-LGTKWTMVLAVFPYAL 100 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCccc--chhhhh----hHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 45555555555544444433 3344444434441 122222 22223333444456666 9999999888776655
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCC
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDEN 147 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~ 147 (588)
-- .++-.| .+-.++.+-+..|+|.|....+--+|++++...+
T Consensus 101 yi----A~Nl~p----------------r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y 142 (390)
T KOG3097|consen 101 YI----AANLEP----------------RYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY 142 (390)
T ss_pred HH----Hhhcch----------------hHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence 33 222211 4556888889999999999999999999987643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 290 bits (743), Expect = 3e-91
Identities = 83/516 (16%), Positives = 172/516 (33%), Gaps = 54/516 (10%)
Query: 29 MVLYFKNEMHFDL------AGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82
+ + + + A A + +F + L+GG+I+D F ++ T L +
Sbjct: 35 LTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI 94
Query: 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAG 142
+ L I +S FY L+L + G GG + + +F
Sbjct: 95 YCVGHAFLAIFEHS------------------VQGFYTGLFLIALGSGGIKPLVSSFMGD 136
Query: 143 QFDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLI 202
QFD+++ F+ + + + + + F + V F+ +
Sbjct: 137 QFDQSNKS---LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATV 193
Query: 203 ALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTWERIP 262
G+ Y P V+ A+ + + L I A IP
Sbjct: 194 FFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIP 253
Query: 263 HANQFRCLDKAAI-------MPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNT 315
L A + + + V+ V+ + R++ + A +
Sbjct: 254 TLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWS 313
Query: 316 CLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHP 375
Q + I Q M + + + L + +L+P F P ++
Sbjct: 314 LFDQKASTWILQANDMV---KPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL 370
Query: 376 SGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMF 435
+ L+++G G+ ++ +S V G ++++ +S+FW Y + ++
Sbjct: 371 T---ALRKMGAGIAITGLSWIVVGTIQLMMDGGS------ALSIFWQILPYALLTFGEVL 421
Query: 436 TFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHG 495
LEF Y +AP MK SF LS++ G + + T + +
Sbjct: 422 VSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT-----VTEQIV-- 474
Query: 496 KDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYK 531
+ +F A ++L +++ A Y+ +
Sbjct: 475 -QTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQ 509
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 3e-11
Identities = 64/442 (14%), Positives = 119/442 (26%), Gaps = 111/442 (25%)
Query: 184 KSWWLGFLVSSVANFIGLIA--------LAAGKCLYRIQQPGESPLVRVAQVLVVAIKNR 235
K+W + V + L C P ++ + Q L+ I
Sbjct: 163 KTW----VALDVCLSYKVQCKMDFKIFWLNLKNC----NSPET--VLEMLQKLLYQIDPN 212
Query: 236 KLSLPDNPEEL-YEINE-KERASTWERIPHANQF-RCLDKAAIMPKDSAVAAPWRV---- 288
S D+ + I+ + R+ + + CL ++ + V
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELR---RLLKSKPYENCLL---VL--LN-VQNAKAWNAFN 263
Query: 289 --CTVTQVEEVKIL--TRMMPILASTILMNTCLAQLQTFS--ITQGAAMDPHLGSIKVPT 342
C KIL TR + T L S +T L +
Sbjct: 264 LSC--------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 343 SSIP-----VIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTV 397
+P P +SI A I + + V + + + ++
Sbjct: 316 QDLPREVLTTNPRR-LSI-----------IAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 398 AGLVEVIRRNAFNE---------TPPKQISLFWL-SFQYCIFGIADMFTFIGLLEFFYKE 447
L R F+ P +SL W + + + + L+E KE
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 448 APAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKRI-----TPSKQGWLHGKDINKNN 502
S+ + S+ Y ++ A+ + I P D+
Sbjct: 424 ---------STISIPSI---YLELKVKLENEYALHRSIVDHYNIPKT---FDSDDLIPPY 468
Query: 503 V-NLFYWFLAIVSVLNLVLY-LYAAAWYKYKPENCSDIKPKPLMDPSAKEEKIDQDDGKA 560
+ FY + + L + + +D E+KI D
Sbjct: 469 LDQYFYSHIG---------HHLKNIEHPER-----MTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 561 KQYGAASSDDGIIGKEKEFIHD 582
G+ + + K +I D
Sbjct: 515 NASGSILNTLQQLKFYKPYICD 536
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 3e-06
Identities = 71/485 (14%), Positives = 124/485 (25%), Gaps = 192/485 (39%)
Query: 145 DENDPKGAKALASYFNFY--LLATT----VAAVIGVTGIVYVFTEKSWWLGF----LVSS 194
+ + K A FN +L TT V + ++ + + S
Sbjct: 252 NVQNAKAWNA----FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDEVKSL 306
Query: 195 VANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINE--K 252
+ ++ + L + +P LS+ I E +
Sbjct: 307 LLKYLDCRP----QDL-PREVLTTNPRR--------------LSI---------IAESIR 338
Query: 253 ERASTWERIPHANQ----------FRCLDKA---------AIMPKDSAVAAPWRVCTVTQ 293
+ +TW+ H N L+ A ++ P
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-------------- 384
Query: 294 VEEVKILTRMMPIL---ASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPL 350
I T ++ ++ + + +L +S+ P K T SIP
Sbjct: 385 ---AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL---VEKQP-----KESTISIP---- 429
Query: 351 LFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFN 410
SI L ++ L R +V+ N
Sbjct: 430 ---SIYL------------ELKVKLENEYALHRS---------------IVD--HYNIPK 457
Query: 411 ETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFL 470
+ +L QY ++ IG + + F + L F
Sbjct: 458 TFDSDDLIPPYL-DQY-------FYSHIG-----HHLKNIEHPERMTLFRMVFLDF---- 500
Query: 471 SSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKY 530
+L K I ++ A S+LN + L Y
Sbjct: 501 --------------------RFLEQK-IRHDSTAW----NASGSILNTLQQL-----KFY 530
Query: 531 KPENCSDIKPKP------LMD--PSAKEEKIDQDDGKAKQYGAASSDDGIIGKEKEFIHD 582
KP C D PK ++D P +E I + + E E I +
Sbjct: 531 KPYIC-DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA--------LMAEDEAIFE 581
Query: 583 EVKSQ 587
E Q
Sbjct: 582 EAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 1e-04
Identities = 21/150 (14%), Positives = 49/150 (32%), Gaps = 23/150 (15%)
Query: 295 EEVKILTRMMPILASTILMNTCLAQLQTFSITQ---GAAMDPHLGSIKVPTSSIPVIPLL 351
EE+ + ++ T+ + L Q + Q + + + P + P +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 352 ----FMSILLPLY----EF--FFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAG-- 399
++ LY F + V + + +L R +++ + +G
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVLI--DGVLGSGKT 164
Query: 400 -LV-EVIRRNAFNETPPKQISLFWLSFQYC 427
+ +V +I FWL+ + C
Sbjct: 165 WVALDVCLSYKVQCKMDFKI--FWLNLKNC 192
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 32/185 (17%), Positives = 70/185 (37%), Gaps = 28/185 (15%)
Query: 29 MVLYF-----KNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 83
++ Y ++H A A++ + + +L +GGF++D + G L
Sbjct: 36 LLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLI 95
Query: 84 VLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQ 143
+L ++L + P A+ +GS+ L G G + +
Sbjct: 96 MLGHIVLAL--------PFG-----------ASALFGSIILIIIGTGFLKPNVSTLVGTL 136
Query: 144 FDENDPKGAKALASYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIA 203
+DE+D + + F+ ++ + A I + + + F ++++ FIGL+
Sbjct: 137 YDEHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192
Query: 204 LAAGK 208
G
Sbjct: 193 YYFGG 197
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 38/207 (18%), Positives = 65/207 (31%), Gaps = 34/207 (16%)
Query: 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLV 61
+ N FVY++ G + Y K HF L +S + + L+
Sbjct: 256 YIAIANVFVYLLR-----YGILD---WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL 307
Query: 62 GGFISDTFLS--RFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFY 119
G++SD R AT + F TL +A ++ + + N +
Sbjct: 308 CGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM-NPAGNP-------------TVDMICM 353
Query: 120 GSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALAS-YFNFYLLATTVAAVIGVTGIV 178
+ +G G E PK A A+ + +V +
Sbjct: 354 IVIGFLIYGPVMLIGLHAL-------ELAPKKAAGTAAGFTGL--FGYLGGSVAASAIVG 404
Query: 179 YVFTEKSWWLGFLVSSVANFIGLIALA 205
Y W GF+V + + +I L
Sbjct: 405 YTVDFFGWDGGFMVMIGGSILAVILLI 431
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 588 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.96 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.91 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.89 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.52 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.34 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.31 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.08 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.95 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.22 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=335.59 Aligned_cols=434 Identities=12% Similarity=0.028 Sum_probs=264.0
Q ss_pred HhHHHHHHHchhccC--------CChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhc
Q 007816 24 ANGISMVLYFKNEMH--------FDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAY 95 (588)
Q Consensus 24 ~v~~~~~~~~~~~l~--------~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~ 95 (588)
++++...++++++++ .++.+.|++++++.+|..+|++++|+++|| +|||++++++.+++.+++++++++..
T Consensus 29 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~ 107 (491)
T 4gc0_A 29 AVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPEL 107 (491)
T ss_dssp HGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455556666665553 345677899999999999999999999999 99999999999999999999996431
Q ss_pred cccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhh
Q 007816 96 SKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVT 175 (588)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~ 175 (588)
.......... -..--..++++++++|+++|+|.|+..++.++|++|.+|+++ |++..++.+....+|.++++.
T Consensus 108 ~~~~~~~~~~-~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~ 180 (491)
T 4gc0_A 108 GFTSINPDNT-VPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYC 180 (491)
T ss_dssp TTSCSSSSSS-CCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhh
Confidence 1100000000 000002378899999999999999999999999999999887 999999999999999999988
Q ss_pred hhheecc--------ccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 007816 176 GIVYVFT--------EKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELY 247 (588)
Q Consensus 176 ~~~~i~~--------~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 247 (588)
++..+.. ...||+.+.+..+..++..+..++ .||+|+|+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~L~ 228 (491)
T 4gc0_A 181 VNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYT--------------------------------VPESPRWLM 228 (491)
T ss_dssp HHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGG--------------------------------SCCCHHHHH
T ss_pred cchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhc--------------------------------CCCChHHHH
Confidence 7655532 235777776666554333332221 567777776
Q ss_pred hhhhhhhcccc-cccCCCcch--hhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHH
Q 007816 248 EINEKERASTW-ERIPHANQF--RCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFS 324 (588)
Q Consensus 248 ~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 324 (588)
.+++.+++.+. ++....+.. ...+......+. .+ ...+ ......++.........+++........++...
T Consensus 229 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (491)
T 4gc0_A 229 SRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHG-RK-TGGR----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPE 302 (491)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HTTH----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhh-hh-hhhH----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchH
Confidence 66555544432 111100000 000000000000 00 0000 000001222222333333333333333333333
Q ss_pred HHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 007816 325 ITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVI 404 (588)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 404 (588)
..+..+.... ..........+..++...+...+.+++|||+. +..+...++++++..+.....
T Consensus 303 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~-----------~~~~~~~~~~~~~~l~~~~~~ 365 (491)
T 4gc0_A 303 VFKTLGASTD------IALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-----------QIIGALGMAIGMFSLGTAFYT 365 (491)
T ss_dssp HHHHSSCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH-----------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCcc------chhhHHHHHHHHHHHHHHHHHHHHHhhcCcch-----------hccchHHHHHHHHHHHHHHhc
Confidence 3332222111 11111222233333333444444444587764 556777777777666544211
Q ss_pred HhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 007816 405 RRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKR 484 (588)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~ 484 (588)
. ......+...+++.......+.+..+.+..|++|++.|++++|+.+..+++++++++.+.|.+.+....
T Consensus 366 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~ 435 (491)
T 4gc0_A 366 Q----------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL 435 (491)
T ss_dssp T----------CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred c----------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 122223333333444444556778889999999999999999999999999999999998876442211
Q ss_pred cCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCC
Q 007816 485 ITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENCSDIKPKPL 543 (588)
Q Consensus 485 ~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~le~~~~~~~~~ 543 (588)
. ...+....|++++++++++.++++++.||||||++||+|+.++++
T Consensus 436 ---------~----~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 436 ---------V----AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp ---------H----HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred ---------H----hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence 0 001223468899999999999999999999999999999998754
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=292.11 Aligned_cols=444 Identities=17% Similarity=0.239 Sum_probs=299.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhc-----cCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNE-----MHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLI 78 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i 78 (588)
|+|.+|.+++..+++++++|++.+.++.|++++ +|.+..+.+++.+.+.++..++++++|+++||++|||+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~ 90 (491)
T 4aps_A 11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW 90 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 678899999999999999999999999999988 999999999999999999999999999999993399999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhH
Q 007816 79 FGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASY 158 (588)
Q Consensus 79 ~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~ 158 (588)
+.++..++.+++++++ +.+.++++|+++|+|.|...++.+++++|++|+++ | .|+..
T Consensus 91 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~-~r~~~ 147 (491)
T 4aps_A 91 GGVLIMLGHIVLALPF-------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD---R-RRDAG 147 (491)
T ss_dssp HHHHHHHHHHHHHSCC-------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT---T-HHHHH
T ss_pred HHHHHHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc---c-cceee
Confidence 9999999999999876 44579999999999999999999999999999765 2 27788
Q ss_pred HHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCC---CC-ChhHHHHHHH------
Q 007816 159 FNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQP---GE-SPLVRVAQVL------ 228 (588)
Q Consensus 159 ~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~------ 228 (588)
+++++...++|..++|.+++++.+..+||+.|++.++..+++.+++++..+++...++ +. .+..+..+..
T Consensus 148 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 227 (491)
T 4aps_A 148 FSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLA 227 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCC
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHH
Confidence 9999999999999999999999988999999999888777666666555444332211 11 0111110000
Q ss_pred --------HHHHHhcCCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHH
Q 007816 229 --------VVAIKNRKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKIL 300 (588)
Q Consensus 229 --------~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (588)
.........+. +.+.......... . ...+... . |+... ....++++.
T Consensus 228 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~---------~~~~~~~--~----------~~~~~-~~~~~~~~~ 282 (491)
T 4aps_A 228 VAGFIAIIVVMNLVGWNSL-PAYINLLTIVAIA--I---------PVFYFAW--M----------ISSVK-VTSTEHLRV 282 (491)
T ss_dssp CHHHHHHHHHHHHHSSCCT-THHHHHHHHHHHH--H---------HHHHHHH--H----------C-------------C
T ss_pred HHHHHHHHHHHHhccCccc-ccchhhhhHHHHH--H---------HHHHHHH--H----------hhccc-ccHHHHHHH
Confidence 00001111000 0000000000000 0 0000000 0 00000 001112222
Q ss_pred HHHHHHHHHHHHHHHhhhhchhHHHHHhhh-cCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCC
Q 007816 301 TRMMPILASTILMNTCLAQLQTFSITQGAA-MDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGIT 379 (588)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~ 379 (588)
.....+......++..+.+..+.+..+... ...+ ....+.......+..++..++.+++.++++||+. .
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~------~ 352 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP------S 352 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC------C
Confidence 233334444444455544444433322222 1111 1345666677788888888888888777777642 4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHH
Q 007816 380 QLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSF 459 (588)
Q Consensus 380 ~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~ 459 (588)
....+.+|.++++++++++....... ......+.+++.+.+++.+++.....+..++++.|.+|++.||+++|+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 426 (491)
T 4aps_A 353 SPTKFAVGLMFAGLSFLLMAIPGALY------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSM 426 (491)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHHHC------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhc------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence 45667788888888887776543211 001234566777888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 007816 460 TYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYK 531 (588)
Q Consensus 460 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~ 531 (588)
.++...+++.+++.+.+.+.+ .++...|+++++++++..++++++.++++++
T Consensus 427 ~~~~~~~g~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 427 WFLSSSVGSALNAQLVTLYNA--------------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGGG--------------------SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888776533 1234568888888888888888777766554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=291.24 Aligned_cols=486 Identities=17% Similarity=0.255 Sum_probs=288.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccC------CChhhHHHHHHHHHHHHHHHhhhhHHhhhccc-chhHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMH------FDLAGASNTLTNFFGSTFLLCLVGGFISDTFL-SRFATC 76 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~------~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~-GRr~~i 76 (588)
++|.+|.+++.+++.++++|++.+.++.|+++++| ++..+.+++.+.+.++..++.+++|+++|| + |||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~ 88 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTI 88 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHH
Confidence 57889999999999999999999999999999999 999999999999999999999999999999 8 999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhh
Q 007816 77 LIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALA 156 (588)
Q Consensus 77 ~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg 156 (588)
.++.++..++.+++++++ .+.+.++++|+++|+|.|...+..+++++|.+|+++ |..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~ 147 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFE------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQ 147 (524)
T ss_dssp HHHHHHHHHHHHHHHHTS------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHH
T ss_pred HHHHHHHHHHHHHHHHhc------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHH
Confidence 999999999999998875 145679999999999999999999999999999877 22224
Q ss_pred hHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcC
Q 007816 157 SYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRK 236 (588)
Q Consensus 157 ~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
..+++++...++|..++|.+++++.+..+||+.|++.+++.++..++++...++....++++++..+..+.++...++++
T Consensus 148 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (524)
T 2xut_A 148 KAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKV 227 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhh
Confidence 45666999999999999999999988889999999988887766666655555443333322221111111111122211
Q ss_pred CCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhc----cCCCCCCCCCCcc-------cccccchHHHHHHHHHHH
Q 007816 237 LSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAA----IMPKDSAVAAPWR-------VCTVTQVEEVKILTRMMP 305 (588)
Q Consensus 237 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 305 (588)
.+ ++....+.+........ ....+.+......... ...+. ..+.+|+ .+.+...+++++.+....
T Consensus 228 ~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (524)
T 2xut_A 228 EG-KGNIGLVLALIGGVSAA--YALVNIPTLGIVAGLCCAMVLVMGF-VGAGASLQLERARKSHPDAAVDGVRSVLRILV 303 (524)
T ss_dssp TT-HHHHHHHHHHHHHHHHH--HTGGGTTTTCSSHHHHHHHHHHHHH-HHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHH
T ss_pred cc-cCccchhhhhhhhhhhh--hhhcccchhhhhhhhhhhhhhhhcc-cccchhhHHhhhhccccHhHHHHHHHHHHHHH
Confidence 10 00000000000000000 0000000000000000 00000 0000110 000011122233333333
Q ss_pred HHHHHHHHHHhhhhchhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHH
Q 007816 306 ILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVG 385 (588)
Q Consensus 306 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~ 385 (588)
+......++..+.+..+.+..+...++... + ...+.....+.+..++..++.+++..+..+|+.. +.++...+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 377 (524)
T 2xut_A 304 LFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMG 377 (524)
T ss_dssp HHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHH
T ss_pred HHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC---CCChHHHHH
Confidence 433344444555555555555444443221 0 1233444555666777778888775444444321 124455677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHH
Q 007816 386 IGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLS 465 (588)
Q Consensus 386 ~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~ 465 (588)
+|+++++++++++...... .+.....+.+++++.+++.++++....+..++++.|.+|++.||+++|+.++...
T Consensus 378 ~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 451 (524)
T 2xut_A 378 AGIAITGLSWIVVGTIQLM------MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVT 451 (524)
T ss_dssp THHHHHHHHHHTTTTTTTT------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHH------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHH
Confidence 7888877777665433100 0000124566777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccccccCCC
Q 007816 466 FGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENC 535 (588)
Q Consensus 466 l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~le~ 535 (588)
+++.+++.+.+.+.+.+.. +|..+. +.+...+.|++++++++++.++++++.++++.++.++
T Consensus 452 ~g~~~g~~~~g~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (524)
T 2xut_A 452 VGNLWVLLANVSVKSPTVT------EQIVQT--GMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR 513 (524)
T ss_dssp HHHHHHHHHHHHTTSCHHH------HHHHHH--HSCHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHhcccccc------cccccc--cccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 9999999998876432110 122100 0001122378888888888888888778777655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-28 Score=255.08 Aligned_cols=398 Identities=10% Similarity=-0.039 Sum_probs=252.1
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
+.++.+++..++..+..+.+.. ..+++.+++ .+..+.+++.+++.++..++.+++|+++|| +|||+++.++.++..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFAL-AMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHH-HHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHH
Confidence 3455556666666555554444 455666677 999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHH----hhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 86 ALVMLTI----QAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 86 g~~l~~~----a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
+.+++++ ++ +++.++++|+++|+|.|...++..++++|.+|+++ |++++++
T Consensus 105 ~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~ 159 (451)
T 1pw4_A 105 VMLFMGFVPWATS-------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSV 159 (451)
T ss_dssp HHHHHHHCHHHHS-------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHH
T ss_pred HHHHHHhhhhccc-------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHH
Confidence 9999998 76 34579999999999999999999999999999877 9999999
Q ss_pred HHHHHHHHHHHHhhhhheeccccc-hhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCC
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKS-WWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLP 240 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 240 (588)
.+...++|.+++|.+++++.+..+ ||+.|++.+++.++..++.+...|+.+......+. .+..
T Consensus 160 ~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 223 (451)
T 1pw4_A 160 WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI----------------EEYK 223 (451)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC----------------TTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh----------------hhhc
Confidence 999999999999999998878888 99999998887666655554444432111100000 0000
Q ss_pred CCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccc-cccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007816 241 DNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVC-TVTQVEEVKILTRMMPILASTILMNTCLAQ 319 (588)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 319 (588)
+ . .+ + +. + +.+.++..++.. .....+ .+.++......+...........
T Consensus 224 ~-~---~~----~-----------------~~-~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 273 (451)
T 1pw4_A 224 N-D---YP----D-----------------DY-N---EKAEQELTAKQIFMQYVLP-NKLLWYIAIANVFVYLLRYGILD 273 (451)
T ss_dssp C-C-----------------------------------------CCTHHHHHHTSS-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-c---cc----c-----------------cc-h---hhhhcccccccchHHHHHc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00 0 00 0 000000001000 000000 11222111111111111111111
Q ss_pred chhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhh--hhhccCCCCCCCchHHHHHHHHHHH-HHHH
Q 007816 320 LQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPF--ARKITGHPSGITQLQRVGIGLVLSA-VSMT 396 (588)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~--~rr~~~~~~~~~~~~~~~~G~~l~~-~~~~ 396 (588)
+.+.+..+..+.+ ....+.......++.+++.++..++.+++ +||+ .+.++.++.. ++++
T Consensus 274 ~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 336 (451)
T 1pw4_A 274 WSPTYLKEVKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-----------ATGVFFMTLVTIATI 336 (451)
T ss_dssp HHHHHBTTBSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----------hHHHHHHHHHHHHHH
Confidence 1111111111111 11223344445566666667777775555 4443 1334444333 3333
Q ss_pred HHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHH-HHHHHHHHH
Q 007816 397 VAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSF-GYFLSSAFV 475 (588)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l-~~~i~~~~~ 475 (588)
++... ...+.+.+....++.+++.....+..+.+..|.+|++.|++++|+.+....+ ++.+++.+.
T Consensus 337 ~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 337 VYWMN-------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp HTTSC-------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 32211 0124445556666777777778888889999999999999999999999999 999999998
Q ss_pred HHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Q 007816 476 DIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAA 526 (588)
Q Consensus 476 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~ 526 (588)
+.+.+.. ++...|++.+++++++.++.++..+
T Consensus 404 g~l~~~~-------------------g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 404 GYTVDFF-------------------GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHSS-------------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-------------------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8775411 2456688888888888777665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-25 Score=232.70 Aligned_cols=351 Identities=10% Similarity=0.009 Sum_probs=228.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHH
Q 007816 7 NFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 86 (588)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig 86 (588)
.++.+++..++..+... +.+.+.+++.+++|.+..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++
T Consensus 27 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~ 104 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANN-LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHH
Confidence 34445555555555554 55566677899999999999999999999999999999999999 99999999999999999
Q ss_pred HHHH---HHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007816 87 LVML---TIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 163 (588)
Q Consensus 87 ~~l~---~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~ 163 (588)
.+++ +.++ +++.++++|+++|+|.|...+...++++|.+|+++ |++.+++.+
T Consensus 105 ~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~ 159 (438)
T 3o7q_A 105 AALFWPAAEIM-------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQ 159 (438)
T ss_dssp HHHHHHHHHTT-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHH
T ss_pred HHHHHhccccc-------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHH
Confidence 9999 5554 67789999999999999999999999999999888 999999999
Q ss_pred HHHHHHHHHHhhhhheec-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhhccceeecCCC
Q 007816 164 LATTVAAVIGVTGIVYVF-TEKS-------------------------WWLGFLVSSVANFIGLIALAAGKCLYRIQQPG 217 (588)
Q Consensus 164 ~~~~iG~~ig~~~~~~i~-~~~~-------------------------w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (588)
...++|..+++.+++++. +..+ ||+.|++.++..++..++++.... ++++++
T Consensus 160 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~ 237 (438)
T 3o7q_A 160 TFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSD 237 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Cccccc
Confidence 999999999999999887 5544 999998777665544444333211 110000
Q ss_pred CChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCccc-ccccchHH
Q 007816 218 ESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRV-CTVTQVEE 296 (588)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 296 (588)
.+ . ..+ ..+ .. ..++. +++
T Consensus 238 ~~-----------------~-~~~---------------------~~~---~~-------------~~~~~~~~~----- 257 (438)
T 3o7q_A 238 NH-----------------S-DAK---------------------QGS---FS-------------ASLSRLARI----- 257 (438)
T ss_dssp CC-----------------C-CSS---------------------TTS---HH-------------HHHHHHTTC-----
T ss_pred cc-----------------c-ccc---------------------ccc---hh-------------hhHHHHHhC-----
Confidence 00 0 000 000 00 00000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhHH-HHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCC
Q 007816 297 VKILTRMMPILASTILMNTCLAQLQTFS-ITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHP 375 (588)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~ 375 (588)
++....................+...+ ..+..+.+. ...+.......++.+++.++..++.++++||+.
T Consensus 258 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~--- 327 (438)
T 3o7q_A 258 -RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA------GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV--- 327 (438)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH---
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH---
Confidence 111111111111111111111222222 222222221 112223333445555555666666555566542
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhH
Q 007816 376 SGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTL 455 (588)
Q Consensus 376 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~ 455 (588)
+.++.+++++++++.... .+. +....+++.+++.....+..+.+..|.+|++ ++.
T Consensus 328 --------~~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 382 (438)
T 3o7q_A 328 --------LAAYALIAMALCLISAFA---------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKY 382 (438)
T ss_dssp --------HHHHHHHHHHHHHHHHHC---------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHH
T ss_pred --------HHHHHHHHHHHHHHHHHc---------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence 555666666655544332 111 2233446667777788899999999999987 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007816 456 ASSFTYLSLSFGYFLSSAFVDIINAVT 482 (588)
Q Consensus 456 ~~~~~~~~~~l~~~i~~~~~~~~~~~~ 482 (588)
++++.. .+.+++.+++.+.+.+.+..
T Consensus 383 ~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 383 GSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999887 67799999999888876543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-24 Score=219.09 Aligned_cols=167 Identities=12% Similarity=0.075 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHH
Q 007816 9 FVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 88 (588)
Q Consensus 9 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~ 88 (588)
+.+++..++..++.....+.+ +.+.+++|.++.+.+++.+.+.++..++.++.|+++|| +|||+++.++..+..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAI-ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhh-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHH
Confidence 456667777766666555544 45678899999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 007816 89 MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTV 168 (588)
Q Consensus 89 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~i 168 (588)
+.++++ +.+.++++|+++|++.+...+...++++|.+|+++ |++.+++.+...++
T Consensus 81 ~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 135 (375)
T 2gfp_A 81 VAVTTS-------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILV 135 (375)
T ss_dssp HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHH
T ss_pred HHHHhc-------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence 999886 66789999999999999999999999999999887 99999999999999
Q ss_pred HHHHHhhhhheeccccchhHHHHHHHHHHHHHHH
Q 007816 169 AAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLI 202 (588)
Q Consensus 169 G~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 202 (588)
|..++|.+++++.+..+||+.|++.++..++..+
T Consensus 136 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 136 SPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999888999999988776555444
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-24 Score=222.42 Aligned_cols=400 Identities=10% Similarity=0.005 Sum_probs=232.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHH
Q 007816 1 MLLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFG 80 (588)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~ 80 (588)
.++++|++|.+....++..+++..+.+.++.|+++++|+|..+.|++.+.+.++..++++++|+++|| +|||++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~ 80 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWII 80 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHH
Confidence 36899999999999999888888889999999999999999999999999999999999999999999 99999999998
Q ss_pred HHHHHHHHHH---HHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhh
Q 007816 81 TLEVLALVML---TIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALAS 157 (588)
Q Consensus 81 ~i~~ig~~l~---~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~ 157 (588)
.++.++.... +++.... ..++.++++.|++.|...+...+...+..++. .+.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~ 138 (417)
T 2cfq_A 81 TGMLVMFAPFFIFIFGPLLQ------------------YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNF 138 (417)
T ss_dssp HHTTSCHHHHHHHTHHHHHH------------------TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhccc
Confidence 8876643211 2221100 01345666666666655555444444443311 112566
Q ss_pred HHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCC
Q 007816 158 YFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKL 237 (588)
Q Consensus 158 ~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
.++......++|..++|.+++++.+ .+||+.|++.++..++..+..+...|+ ++++.++ .
T Consensus 139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~----------------~ 198 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD---APSSATV----------------A 198 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC---CSCSSCS----------------S
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc---ccccccc----------------c
Confidence 7777777788999999999988875 589999987665533333222211111 0000000 0
Q ss_pred CCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcc-cccccchHHHHHHHHHHHHHHHHHHHHHh
Q 007816 238 SLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWR-VCTVTQVEEVKILTRMMPILASTILMNTC 316 (588)
Q Consensus 238 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (588)
+..+ . ..+.... ..++ .++ + ++..............+..
T Consensus 199 ~~~~-----------------~---~~~~~~~--------------~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~ 238 (417)
T 2cfq_A 199 NAVG-----------------A---NHSAFSL--------------KLALELFR-----Q-PKLWFLSLYVIGVSCTYDV 238 (417)
T ss_dssp SSSS-----------------S---CCCCCCH--------------HHHHHHTT-----C-HHHHHHHHHHHHHHHHHHH
T ss_pred cccc-----------------c---ccccccH--------------HHHHHHhc-----C-CchhhHHHHHHHHHHHHHH
Confidence 0000 0 0000000 0000 001 0 1111111111111111112
Q ss_pred hhhchhHHHHHhhhcCCCCCcc-cccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHH
Q 007816 317 LAQLQTFSITQGAAMDPHLGSI-KVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSM 395 (588)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~ 395 (588)
+.+....+..+. .... +. ....+.....+.+..++..++..++.|+++||+. +..+.+++++++
T Consensus 239 ~~~~~~~~~~~~--~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-----------l~~~~~~~~~~~ 303 (417)
T 2cfq_A 239 FDQQFANFFTSF--FATG--EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-----------LLLAGTIMSVRI 303 (417)
T ss_dssp HHHHHHHHHHHT--SSSH--HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--Hhcc--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-----------HHHHHHHHHHHH
Confidence 222222221111 1100 00 0001222233334444455556666555576652 445666555554
Q ss_pred HHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHH-HHHHHHHHHHHHHH
Q 007816 396 TVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFT-YLSLSFGYFLSSAF 474 (588)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~-~~~~~l~~~i~~~~ 474 (588)
+..... .+.+.+++..++.+++.....+..+.++.|.+|++.||++.++. +..+.+++.+++.+
T Consensus 304 ~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l 368 (417)
T 2cfq_A 304 IGSSFA---------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHHTTC---------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred HHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 433211 12333444444455555566667788999999999999999984 77888999999998
Q ss_pred HHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 007816 475 VDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKP 532 (588)
Q Consensus 475 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~ 532 (588)
.+.+.+. .++...|++.+++++++.++.+++.||++..+
T Consensus 369 ~G~l~~~-------------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 369 AGNMYES-------------------IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHTHHHH-------------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHh-------------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 8876431 12455688888888888877776666544433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=144.64 Aligned_cols=181 Identities=14% Similarity=0.074 Sum_probs=158.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhccc--chhHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFL--SRFATCLIF 79 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~--GRr~~i~i~ 79 (588)
++++|.+|.+++..++..+.++++...++.|+++.+|++..+.+++.+.+.++..++.++.|++.|| + |||+.+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~ 326 (451)
T 1pw4_A 248 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVF 326 (451)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999 9 999999888
Q ss_pred HHHHH-HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhH
Q 007816 80 GTLEV-LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASY 158 (588)
Q Consensus 80 ~~i~~-ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~ 158 (588)
..+.. ++.++..+.. ..+.+.+.+..++.|++.+...+....++.|.+|+++ |++.
T Consensus 327 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 383 (451)
T 1pw4_A 327 FMTLVTIATIVYWMNP-----------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA 383 (451)
T ss_dssp HHHHHHHHHHHTTSCC-----------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHH
T ss_pred HHHHHHHHHHHHHHhc-----------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhH
Confidence 87776 5555554442 1255677888889999999999999999999999877 9999
Q ss_pred HHHHHHHHHH-HHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHh
Q 007816 159 FNFYLLATTV-AAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 159 ~~~~~~~~~i-G~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
++++....++ |..++|.+.+++.+..+|+..|++.+++.+++.++.+.
T Consensus 384 ~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 384 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999899999999988877666665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.6e-12 Score=130.75 Aligned_cols=172 Identities=12% Similarity=0.016 Sum_probs=143.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHH-chhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLY-FKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFG 80 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~ 80 (588)
++++|.+|..++..++.....+++.+.++.| +++.+|++..+.+++.+.+.++..++.+++|++.|| +|||+.+.++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~ 332 (438)
T 3o7q_A 254 LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYA 332 (438)
T ss_dssp HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHH
Confidence 3678889999999999999999999999999 888899999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 81 TLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 81 ~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
++..++.++..+.+ +.+. ++.-++.|++.+...|...++..|.+|++ |+...+
T Consensus 333 ~~~~~~~~~~~~~~-------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 385 (438)
T 3o7q_A 333 LIAMALCLISAFAG-------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS 385 (438)
T ss_dssp HHHHHHHHHHHHCC-------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHH
T ss_pred HHHHHHHHHHHHcC-------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhh
Confidence 99988888777765 2223 33448899999999999999999998832 445555
Q ss_pred HHHHHHHHHHHHHhhhhheeccccc-hhHHHHHHHHHHHHHHH
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKS-WWLGFLVSSVANFIGLI 202 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~ 202 (588)
+.. ...+|..++|.+.|++.+..+ ++..|.+.++..++..+
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 544 566999999999999998888 99998887655444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-12 Score=133.28 Aligned_cols=178 Identities=8% Similarity=-0.032 Sum_probs=137.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCC---ChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHF---DLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIF 79 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~ 79 (588)
++.|.+|..++..++....++...+.++.|+.+.++. +....+.+.+...++..++.+++|++.|| +|||+++.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~ 295 (417)
T 2cfq_A 217 FRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLA 295 (417)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHH
T ss_pred hcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHH
Confidence 4567777777665655556666666777788776653 23455777777777888899999999999 8999999988
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
..+..++.++.++.+ +.+.+++..++.+++.+...+....+++|.+|++. |++..
T Consensus 296 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~ 350 (417)
T 2cfq_A 296 GTIMSVRIIGSSFAT-------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIY 350 (417)
T ss_dssp HHHHHHHHHHHTTCC-------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHH
T ss_pred HHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHH
Confidence 888887766665443 34567777788888888777878899999999766 88888
Q ss_pred HH-HHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHh
Q 007816 160 NF-YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 160 ~~-~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
++ +....++|..++|.++|++.+..+++..|.+.+++.+++.++.+.
T Consensus 351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 88 467778999999999999988888998998887776666665444
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.2e-10 Score=121.06 Aligned_cols=185 Identities=9% Similarity=-0.055 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHH-----HHHHH
Q 007816 8 FFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCL-----IFGTL 82 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~-----i~~~i 82 (588)
.+.+++..++....++...+.++.|+.+.++.+..+.+++.+...++..++.++.|++.|| +|||+... ++..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHH
Confidence 4555556666667777777888889998888887888999999999999999999999999 89987655 77777
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.++.+....... .+...+.+.+++.-++.|+|.+...+...+++.|.+|++. |++.++++
T Consensus 364 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 427 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG----------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMW 427 (491)
T ss_dssp HHHHHTTTHHHHHHCC----------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHH
T ss_pred HHHHHHHHHHHHHhcC----------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHH
Confidence 7777766665431100 0001245677888899999999999999999999999988 99999999
Q ss_pred HHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCL 210 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~ 210 (588)
....++|..+++.+.+++.+ .++...|.+.++..++..++.+...++
T Consensus 428 ~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 428 FLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888865 466777777776666665555554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9.5e-09 Score=109.54 Aligned_cols=184 Identities=9% Similarity=-0.063 Sum_probs=127.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
+..+..+....+..+..+.......+++.+..+.+............+...++.++++++.|| +|||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHH
Confidence 334444444455445444455555566777788888888888888888999999999999999 8999999999999888
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLA 165 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~ 165 (588)
+.+..+....... ..........-...+++.+ ..|....|.+|++|.+. |++.+++....
T Consensus 355 ~~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~------R~~~~g~~~~~ 414 (491)
T 4gc0_A 355 GMFSLGTAFYTQA-------------PGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAI------RGKALAIAVAA 414 (491)
T ss_dssp HHHHHHHHHHTTC-------------CHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTT------HHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-------------chHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhH------HHHHHHHHHHH
Confidence 8777665532111 1112222222222333333 44677789999999988 99999999999
Q ss_pred HHHHHHHHhhhhheecc------ccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007816 166 TTVAAVIGVTGIVYVFT------EKSWWLGFLVSSVANFIGLIALAAGKCL 210 (588)
Q Consensus 166 ~~iG~~ig~~~~~~i~~------~~~w~~~f~i~~~~~~~~~~~~~~~~~~ 210 (588)
.++|..+++.+...+.. ..++...|++.+++.+++.++.++..||
T Consensus 415 ~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 99999888877655532 2455667777777777777766666665
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-10 Score=118.32 Aligned_cols=168 Identities=11% Similarity=-0.019 Sum_probs=134.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|.+|...+..++...+.+++....+.|+++.+|.+..+.+.+.+...++..++.++.|++.|| +||+ +.++...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~ 272 (375)
T 2gfp_A 196 FGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVIC 272 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHH
Confidence 456788999999999999999999999999999899999999999999999999999999999999 8883 3333333
Q ss_pred -HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 83 -EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 83 -~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
...+..+....... ..+.+.+++.-++.|++.|...+...+++.|..| ++ |++.+++
T Consensus 273 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~ 330 (375)
T 2gfp_A 273 CLLAGLLMWIPDWFG---------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGAL 330 (375)
T ss_dssp HHHTSSSSSHHHHHH---------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHH
T ss_pred HHHHHHHHHHHhhhc---------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHH
Confidence 33333221211100 1145667788899999999999999999999987 55 9999999
Q ss_pred HHHHHHHHHHHHhhhhheeccccchhHHHHHHHH
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSV 195 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~ 195 (588)
.....++|..+++.+.+.+.+..+|+..+.+...
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999999999999999998877778877776443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.6e-06 Score=87.32 Aligned_cols=134 Identities=11% Similarity=0.070 Sum_probs=92.7
Q ss_pred cchhHHHHHHHHHhhhHhHHhh-hhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHH
Q 007816 346 PVIPLLFMSILLPLYEFFFVPF-ARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSF 424 (588)
Q Consensus 346 ~~~~~l~~~~~~~l~~~~~~~~-~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (588)
.....++..++.++..++.|++ +||+. +.++.++.+++.++.... +.+.+.+.+
T Consensus 60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~-----------~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 114 (524)
T 2xut_A 60 FHSFVIGVYFFPLLGGWIADRFFGKYNT-----------ILWLSLIYCVGHAFLAIF--------------EHSVQGFYT 114 (524)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTSSCSHHH-----------HHHHHHHHHHHHHHHHHT--------------SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHH-----------HHHHHHHHHHHHHHHHHh--------------cccHHHHHH
Confidence 3444555666667777776666 66653 566777777766655432 115566777
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHH---HHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCc
Q 007816 425 QYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSF---TYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKN 501 (588)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~---~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 501 (588)
..++.+++.....+...+++.|.+|++.|+++.++ ......+|..+++.+.+.+.+. .
T Consensus 115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------------------~ 175 (524)
T 2xut_A 115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-------------------F 175 (524)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-------------------S
T ss_pred HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------------c
Confidence 78888999999999999999999999999887777 7777777877777766655321 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 007816 502 NVNLFYWFLAIVSVLNLVLYLY 523 (588)
Q Consensus 502 ~~~~~f~~~a~~~~~~~v~~~~ 523 (588)
++...|++.+++.++..+..++
T Consensus 176 g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 2345677777776666555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 588 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.34 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.2 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=4.6e-27 Score=246.07 Aligned_cols=180 Identities=10% Similarity=0.017 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHHH---hHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHH
Q 007816 8 FFVYVVFSALENMGFIA---NGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 84 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ 84 (588)
-|.+....++..+..|. ..+.+.++++ ++|+|..|.|++.+++.++..++.+++|+++|| +|||+++.++.++..
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~ 100 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAA 100 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHH
Confidence 35566655555555553 3566677887 589999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 007816 85 LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLL 164 (588)
Q Consensus 85 ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~ 164 (588)
++.++++++....+ +.+.+++.|++.|++.|...++...+++|.+|+++ |++++++.+.
T Consensus 101 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~ 159 (447)
T d1pw4a_ 101 AVMLFMGFVPWATS---------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNC 159 (447)
T ss_dssp HHHHHHHHCHHHHS---------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHH
T ss_pred HHHhhccccchhhh---------------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------cccccccccc
Confidence 99999988754332 45689999999999999999999999999999887 9999999999
Q ss_pred HHHHHHHHHhhhhheecc-ccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007816 165 ATTVAAVIGVTGIVYVFT-EKSWWLGFLVSSVANFIGLIALAAGKCL 210 (588)
Q Consensus 165 ~~~iG~~ig~~~~~~i~~-~~~w~~~f~i~~~~~~~~~~~~~~~~~~ 210 (588)
..++|..+++.+++.+.. ..+||+.|++...+.++..++.+...++
T Consensus 160 ~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 160 AHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred ccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhccc
Confidence 999999999988876654 4589999998887766666655554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.5e-24 Score=222.62 Aligned_cols=400 Identities=10% Similarity=0.001 Sum_probs=245.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|++|.+.+..++..++...+.+.++.|+++++|.|..++|++.+++.++..+++++.|+++|| +||||+++++..+
T Consensus 4 lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~ 82 (417)
T d1pv7a_ 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITG 82 (417)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHH
Confidence 689999999999999999999888999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.++..+..+.+. .....++.+.+.+.+.+...+.......+..+++ ...+.+..+..
T Consensus 83 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 143 (417)
T d1pv7a_ 83 MLVMFAPFFIFIFGPL---------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGRA 143 (417)
T ss_dssp HHHTHHHHHHHTHHHH---------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----HHHHSCCHHHH
T ss_pred HHHHHHHHHHhhhhhh---------------HHHHHHHHHHHhhhcccccccchhhcccccccch----hhhhHHHHHHH
Confidence 9999988887753221 2233455666666666666655555554444321 12245566677
Q ss_pred HHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCC
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDN 242 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 242 (588)
......+..+++.+++.+.+. +|+..+........+..++.++..++.+..+++.++ ++..+
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~---- 205 (417)
T d1pv7a_ 144 RMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANA-------------VGANH---- 205 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHH-------------HHSCC----
T ss_pred hhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhh-------------hhhhc----
Confidence 777888888998888887654 556566555555444444444433321111110000 00000
Q ss_pred chhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchh
Q 007816 243 PEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQT 322 (588)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 322 (588)
.... ..+... ... ... .+...... ...............
T Consensus 206 --------------------~~~~--~~~~~~-------------~~~--~~~-~~~~~~~~---~~~~~~~~~~~~~~~ 244 (417)
T d1pv7a_ 206 --------------------SAFS--LKLALE-------------LFR--QPK-LWFLSLYV---IGVSCTYDVFDQQFA 244 (417)
T ss_dssp --------------------CCCC--HHHHHH-------------HTT--SSH-HHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred --------------------cccc--cccccc-------------ccc--ccc-ccchhhhh---HHHHHHHHhhhcccc
Confidence 0000 000000 000 000 01111000 011110111000000
Q ss_pred HHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 007816 323 FSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVE 402 (588)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~ 402 (588)
.+.. .....................++..+...+..++.++.++|+ .+.++.++++++.+.....
T Consensus 245 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~-----------~~~~~~~~~~~~~~~~~~~- 309 (417)
T d1pv7a_ 245 NFFT---SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----------ALLLAGTIMSVRIIGSSFA- 309 (417)
T ss_dssp HHHT---TSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH-----------HHHHHHHHHHHHHHHHHTC-
T ss_pred cccc---ccccccccchhhhcccccccccccccchhhhhhhhccccccc-----------chhhhHHHHHHhhhccccc-
Confidence 0100 000000000011122223334455555566666655555443 3556666666666555432
Q ss_pred HHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHH-HHHHHHHHHHHHHHHHHhhhh
Q 007816 403 VIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFT-YLSLSFGYFLSSAFVDIINAV 481 (588)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~-~~~~~l~~~i~~~~~~~~~~~ 481 (588)
.+.+.+.+..++.+++.....+....++.|.+|++.|+++.++. ++.+.++..+++.+.+.+.+.
T Consensus 310 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~ 375 (417)
T d1pv7a_ 310 --------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred --------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667778888999999999999999999999999999975 456779999999888877552
Q ss_pred hcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007816 482 TKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYK 529 (588)
Q Consensus 482 ~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~ 529 (588)
. +++..|++.++++++..++.+++.++.+
T Consensus 376 ~-------------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 376 I-------------------GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp H-------------------CHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred H-------------------CHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 2 3456788888888888887777765443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.3e-11 Score=127.19 Aligned_cols=183 Identities=14% Similarity=0.031 Sum_probs=149.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGT 81 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~ 81 (588)
++++|.+|.+....++.....+++....+.|+.+.++++..+.++..+.+.++..++.+++|++.|| ++||+.......
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 323 (447)
T d1pw4a_ 245 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVF 323 (447)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHH
T ss_pred HHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccch
Confidence 4678899999999999999999999999999999999999999999999999999999999999999 898876555544
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 82 LEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 82 i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
...+..+........+ ..+.+..++.-++.|++.+...+....+..|.+|++. |++++++
T Consensus 324 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 383 (447)
T d1pw4a_ 324 FMTLVTIATIVYWMNP--------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGF 383 (447)
T ss_dssp HHHHHHHHHHHTTSCC--------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHH
T ss_pred hHHHHHHHHHHHHhcc--------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence 4443333332221111 2356677788888999999999999999999999877 9999999
Q ss_pred HHHHHHH-HHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHH
Q 007816 162 YLLATTV-AAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALA 205 (588)
Q Consensus 162 ~~~~~~i-G~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 205 (588)
.+...++ |..++|.+.|++.+..||+..|.+..+..+++.++..
T Consensus 384 ~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 384 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 8887777 5677899999999999999999887776655555444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1.5e-11 Score=124.17 Aligned_cols=151 Identities=10% Similarity=-0.071 Sum_probs=128.0
Q ss_pred HchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCC
Q 007816 32 YFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLK 111 (588)
Q Consensus 32 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~ 111 (588)
+..+..+.+....+...+...++..++.++.+++.|| +|||+.+.++..+..++.++..+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 310 (417)
T d1pv7a_ 249 SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT----------------- 310 (417)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTCC-----------------
T ss_pred ccccccccchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhcccccc-----------------
Confidence 3344555667777888888899999999999999999 8999999999999999888888775
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH-HHHHHHHHHHhhhhheeccccchhHHH
Q 007816 112 GAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL-LATTVAAVIGVTGIVYVFTEKSWWLGF 190 (588)
Q Consensus 112 ~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~-~~~~iG~~ig~~~~~~i~~~~~w~~~f 190 (588)
+.+.+++.-++.|++.+...+...+++.|.+|++. |++.++..+ +...+|..++|.+.|++.+..||+..|
T Consensus 311 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~ 382 (417)
T d1pv7a_ 311 --SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY 382 (417)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred --ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence 56678889999999999999999999999999877 999999864 556799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 007816 191 LVSSVANFIGLIALAAGK 208 (588)
Q Consensus 191 ~i~~~~~~~~~~~~~~~~ 208 (588)
++.+++.++..++.++..
T Consensus 383 ~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 383 LVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 988877666655544433
|