Citrus Sinensis ID: 007830

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
METIRSFKGYGKVDELEQQAFRRKTRKRVIILIISSIVLVAVIIGAVIGVVVHKNKNDSSSDNMPATQLTPAASLKAVCSVTRYPDSCFSSISSIDASNVTKDPEILFKLSLQVAMNELGKLQNYPSKLKQQTKDPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKKIQDLKTWLSTSITDQDTCLDALQELNVSHYQNSNILKDIRSAMQNSSEFASNSLAIGSKVLGLLGKVDIPVHRRLLSDHSDSGFPNWVGAGDRRLLQEANPKPDATVAQDGSGDYDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGTPTFATATVAVAGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVFYRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTLSRFDDKLTAATYLGRPWKEFSTTVIMQSTIGPFLNALGWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGSEWLAEANVQYQESL
ccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHEEEEEEEccccccccccccccccccHHHHHHccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHcccccEEEEEEEccEEEEEEEEccccccEEEEEEcccccEEEEcccccccccccccEEEEEEccccEEEccEEEEccccccccEEEEEEcccEEEEEccEEEEcccccccccccEEEEccEEEEEcEEEEcccEEEEEccEEEEcccccccccEEEEccccccccccEEEEEccEEEcccccccccccccccccccccEEEEcccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHcccccccccccccccccccccccccc
cccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccccccccccccccHHHHHHHHHccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcccccccccccccccccccccccccHHHHHHHHcccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccccccEEEEcccccccEEEEEccEEcccEccccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccccccccccccc
metirsfkgygkvDELEQQAFRRKTRKRVIILIISSIVLVAVIIGAVIGVVVHknkndsssdnmpatqltpaaSLKAVCSvtrypdscfssissidasnvtkdpEILFKLSLQVAMNELGklqnypsklkqqtkdpQVIEALKVCETLFDDALDHVNESlssmqvgsgekllsSKKIQDLKTWLSTSITDQDTCLDALQELNVSHYQNSNILKDIRSAMQNSSEFASNSLAIGSKVLGllgkvdipvhrrllsdhsdsgfpnwvgagdrrllqeanpkpdatvaqdgsgdyDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILdksrwnvmmygdgktMTIVSgslnfvdgtptFATATVAVAGrgfiakdmtfintagpekhqavafrsgsdrsvfyRCSFNAYQDTLYahsnrqfyrdcditgtidFIFGNAAVVFqncnilprqplpnqfntitaqgkkdpnqntgisiqkctlsrfddKLTAatylgrpwkefstTVIMQSTIgpflnalgwkewvsgvdpptsifyaeyqnvglgsptsgrvkwagyrptlttdeaakftvgnfiqgsEWLAEANVQYQESL
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
METIRSFKGYGKVDELEQQAFRRKTRKRviiliissivlvaviigavigvvvHKNKNDSSSDNMPATQLTPAASLKAVCSVTRYPdscfssissidasNVTKDPEILFKLSLQVAMNELGKLQNYPSKLKQQTKDPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKKIQDLKTWLSTSITDQDTCLDALQELNVSHYQNSNILKDIRSAMQNSSEFASNSLAIGSKVLGLLGKVDIPVHRRLLSDHSDSGFPNWVGAGDRRLLQEANPKPDATVAQDGSGDYDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGtptfatatvavaGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVFYRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTLSRFDDKLTAATYLGRPWKEFSTTVIMQSTIGPFLNALGWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGSEWLAEANVQYQESL
*******************AFRRKTRKRVIILIISSIVLVAVIIGAVIGVVVH********************SLKAVCSVTRYPDSCFSSISSIDASNVTKDPEILFKLSLQVAMNELGKLQN************QVIEALKVCETLFDDALDHV********************IQDLKTWLSTSITDQDTCLDALQELNVSHYQNSNILKDI************NSLAIGSKVLGLLGKVDIPVHRRLLSDHSDSGFPNWVGA************************YDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGTPTFATATVAVAGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVFYRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTI************GISIQKCTLSRFDDKLTAATYLGRPWKEFSTTVIMQSTIGPFLNALGWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGSEWLAEANV******
*****S************************ILIISSIVLVAVIIGAVIGV**************************AVCSVTRYPDSCFS****************LFKLSLQVAMNELGKL******************ALKVCETLFDDALDHVNESLSS************KKIQDLKTWLSTSITDQDTCLDALQELNVSHY************MQNSSEFASNSLAIGSKVLG***********************NWVGAGDRRLLQEANPKPDATVAQDGSGDYDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGTPTFATATVAVAGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVFYRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTLSRFDDKLTAATYLGRPWKEFSTTVIMQSTIGPFLNALGWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGSEWLAEANVQYQESL
METIRSFKGYGKVDELEQQAFRRKTRKRVIILIISSIVLVAVIIGAVIGVVVHKNKNDSSSDNMPATQLTPAASLKAVCSVTRYPDSCFSSISSIDASNVTKDPEILFKLSLQVAMNELGKLQNYPSKLKQQTKDPQVIEALKVCETLFDDALDHVNESL*********KLLSSKKIQDLKTWLSTSITDQDTCLDALQELNVSHYQNSNILKDIRSAMQNSSEFASNSLAIGSKVLGLLGKVDIPVHRRLLSDHSDSGFPNWVGAGDRRLLQEANPKPDATVAQDGSGDYDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGTPTFATATVAVAGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVFYRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTLSRFDDKLTAATYLGRPWKEFSTTVIMQSTIGPFLNALGWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGSEWLAEANVQYQESL
******FK*YGKVDELEQQAFRRKTRKRVIILIISSIVLVAVIIGAVIGVVVHK***************TPAASLKAVCSVTRYPDSCFSSISSIDASNVTKDPEILFKLSLQVAMNELGKLQNYPSKLKQQTKDPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKKIQDLKTWLSTSITDQDTCLDALQELNVSHYQNSNILKDIRSAMQNSSEFASNSLAIGSKVLGLLGKVDIPVHRRLLSDHSDSGFPNWVGAGDRRLLQEANPKPDATVAQDGSGDYDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGTPTFATATVAVAGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVFYRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTLSRFDDKLTAATYLGRPWKEFSTTVIMQSTIGPFLNALGWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGSEWLAEANVQY****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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METIRSFKGYGKVDELEQQAFRRKTRKRVIILIISSIVLVAVIIGAVIGVVVHKNKNDSSSDNMPATQLTPAASLKAVCSVTRYPDSCFSSISSIDASNVTKDPEILFKLSLQVAMNELGKLQNYPSKLKQQTKDPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKKIQDLKTWLSTSITDQDTCLDALQELNVSHYQNSNILKDIRSAMQNSSEFASNSLAIGSKVLGLLGKVDIPVHRRLLSDHSDSGFPNWVGAGDRRLLQEANPKPDATVAQDGSGDYDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGTPTFATATVAVAGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVFYRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTLSRFDDKLTAATYLGRPWKEFSTTVIMQSTIGPFLNALGWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGSEWLAEANVQYQESL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query588 2.2.26 [Sep-21-2011]
Q43111581 Pectinesterase 3 OS=Phase N/A no 0.976 0.987 0.630 0.0
Q43867586 Pectinesterase 1 OS=Arabi yes no 0.986 0.989 0.593 0.0
Q9LUL8968 Putative pectinesterase/p no no 0.855 0.519 0.577 1e-167
Q9FF78564 Probable pectinesterase/p no no 0.926 0.966 0.475 1e-138
Q9SG77561 Putative pectinesterase/p no no 0.926 0.971 0.450 1e-134
P83948584 Pectinesterase 3 OS=Citru no no 0.901 0.907 0.431 1e-120
Q43143583 Pectinesterase/pectineste N/A no 0.942 0.950 0.412 1e-120
Q8GX86 669 Probable pectinesterase/p no no 0.940 0.826 0.404 1e-118
O04886584 Pectinesterase 1 OS=Citru no no 0.901 0.907 0.433 1e-117
Q3E8Z8 732 Putative pectinesterase/p no no 0.914 0.734 0.406 1e-115
>sp|Q43111|PME3_PHAVU Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1 Back     alignment and function desciption
 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/595 (63%), Positives = 468/595 (78%), Gaps = 21/595 (3%)

Query: 1   METIRSFKGYGKVDELEQQAFRRKTRKRVIILIISSIVLVAVIIGAVIGVVVHKNKNDSS 60
           M+TI+SFKGYGKV+ELEQQA+ +KTRKR+II+ +SSIVL+AVII AV GVV+H N+N  S
Sbjct: 1   MDTIKSFKGYGKVNELEQQAYEKKTRKRLIIIAVSSIVLIAVIIAAVAGVVIH-NRNSES 59

Query: 61  SDN---MPATQLTPAASLKAVCSVTRYPDSCFSSISSIDASNVTKDPEILFKLSLQVAMN 117
           S +   +P T+L+PAASLKAVC  TRYP SCFSSISS+  SN T DPE+LFKLSL+VA++
Sbjct: 60  SPSSDSVPQTELSPAASLKAVCDTTRYPSSCFSSISSLPESNTT-DPELLFKLSLRVAID 118

Query: 118 ELGKLQNYPSKLKQQT-KDPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKK 176
           EL    ++PSKL+    +D ++ +A+ VC ++F DALD +N+S+S++   +G ++ SS  
Sbjct: 119 EL---SSFPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAG-RIASSAS 174

Query: 177 IQDLKTWLSTSITDQDTCLDALQELNVSHYQNSNILKDIRSAMQNSSEFASNSLAIGSKV 236
           + +++TWLS ++TDQDTCLDA+ ELN +  + +  L++I +AM+NS+EFASNSLAI +K+
Sbjct: 175 VSNVETWLSAALTDQDTCLDAVGELNSTAARGA--LQEIETAMRNSTEFASNSLAIVTKI 232

Query: 237 LGLLGKVDIPVH-RRLLSDHSDSGFPNWVGAGDRRLLQEAN--PKPDATVAQDGSGDYDT 293
           LGLL + + P+H RRLL      GFP W+GA +RRLL+E N    PDA VA+DGSG + T
Sbjct: 233 LGLLSRFETPIHHRRLL------GFPEWLGAAERRLLEEKNNDSTPDAVVAKDGSGQFKT 286

Query: 294 IKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGT 353
           I  A+  V+KKS  RF +YVK+G Y EN+ LDK+ WNVM+YGDGK  T V GS NF+DGT
Sbjct: 287 IGEALKLVKKKSEERFSVYVKEGRYVENIDLDKNTWNVMIYGDGKDKTFVVGSRNFMDGT 346

Query: 354 PTFATATVAVAGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVFYRCSFNAYQDTLYAH 413
           PTF TAT AV G+GFIAKD+ F+N AG  KHQAVA RSGSDRSVF+RCSF+ +QDTLYAH
Sbjct: 347 PTFETATFAVKGKGFIAKDIGFVNNAGASKHQAVALRSGSDRSVFFRCSFDGFQDTLYAH 406

Query: 414 SNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTITAQGKKDPNQNTGISI 473
           SNRQFYRDCDITGTIDFIFGNAAVVFQ+C I+PRQPLPNQFNTITAQGKKDPNQNTGI I
Sbjct: 407 SNRQFYRDCDITGTIDFIFGNAAVVFQSCKIMPRQPLPNQFNTITAQGKKDPNQNTGIII 466

Query: 474 QKCTLSRFDDKLTAATYLGRPWKEFSTTVIMQSTIGPFLNALGWKEWVSGVDPPTSIFYA 533
           QK T++ F + LTA TYLGRPWK+FSTTVIMQS IG  LN +GW  WV  V+PPT+IFYA
Sbjct: 467 QKSTITPFGNNLTAPTYLGRPWKDFSTTVIMQSDIGALLNPVGWMSWVPNVEPPTTIFYA 526

Query: 534 EYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGSEWLAEANVQYQESL 588
           EYQN G G+  S RVKWAGY+PT+T   A +FTV +FIQG EWL  A VQ+  +L
Sbjct: 527 EYQNSGPGADVSQRVKWAGYKPTITDRNAEEFTVQSFIQGPEWLPNAAVQFDSTL 581
May have roles in the deposition of pectin in developing tissues and in the wall loosening and cell separation that occurs in cell expansion, fruit ripening and abscission.
Phaseolus vulgaris (taxid: 3885)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q43867|PME1_ARATH Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUL8|PME26_ARATH Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1 Back     alignment and function description
>sp|Q9FF78|PME46_ARATH Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1 Back     alignment and function description
>sp|Q9SG77|PME24_ARATH Putative pectinesterase/pectinesterase inhibitor 24 OS=Arabidopsis thaliana GN=PME24 PE=3 SV=1 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|Q43143|PMEU1_SOLLC Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2 Back     alignment and function description
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description
>sp|Q3E8Z8|PME28_ARATH Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query588
224074107588 predicted protein [Populus trichocarpa] 0.996 0.996 0.691 0.0
255584428589 Pectinesterase-3 precursor, putative [Ri 0.998 0.996 0.693 0.0
225441979578 PREDICTED: pectinesterase 3 [Vitis vinif 0.982 1.0 0.676 0.0
449453399576 PREDICTED: pectinesterase 3-like [Cucumi 0.974 0.994 0.646 0.0
356520172587 PREDICTED: pectinesterase 3-like [Glycin 0.984 0.986 0.629 0.0
6093739581 RecName: Full=Pectinesterase 3; Short=PE 0.976 0.987 0.630 0.0
356559248586 PREDICTED: pectinesterase 3-like [Glycin 0.984 0.988 0.628 0.0
384597515582 pectin methylesterase [Coffea arabica] 0.979 0.989 0.617 0.0
297847788585 ATPME1 [Arabidopsis lyrata subsp. lyrata 0.986 0.991 0.596 0.0
297834300588 hypothetical protein ARALYDRAFT_318218 [ 0.989 0.989 0.590 0.0
>gi|224074107|ref|XP_002304256.1| predicted protein [Populus trichocarpa] gi|222841688|gb|EEE79235.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  861 bits (2224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/590 (69%), Positives = 485/590 (82%), Gaps = 4/590 (0%)

Query: 1   METIRSFKGYGKVDELEQQAFRRKTRKRVIILIISSIVLVAVIIGAVIGVVVHKNKNDSS 60
           M++I SFKGYGKVDE EQQAFR+K+RKR+II+++SSIVL+AVIIGAVIG VVHK  N SS
Sbjct: 1   MDSINSFKGYGKVDEAEQQAFRKKSRKRLIIIVVSSIVLLAVIIGAVIGAVVHKRNNKSS 60

Query: 61  SDNMPATQLTPAASLKAVCSVTRYPDSCFSSISSIDASNVTKDPEILFKLSLQVAMNELG 120
           S+ +P  +LTPA SLKAVCSVT+YP SCFSSIS+++  N T DPE+LFKLSL+VAMNEL 
Sbjct: 61  SNPVPPPELTPATSLKAVCSVTQYPASCFSSISALETGNTT-DPEVLFKLSLRVAMNELS 119

Query: 121 KLQNYPSKLKQQTKDPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKKIQDL 180
           KL++YP KL Q  KD  +  ALKVC T+FDDA+D +N+S+SSM +G GE++LS  K+ DL
Sbjct: 120 KLKDYPDKLIQSIKDTTLQGALKVCATVFDDAVDRLNDSISSMAIGEGEQILSPAKMNDL 179

Query: 181 KTWLSTSITDQDTCLDALQELNVSHYQNSNILKDIRSAMQNSSEFASNSLAIGSKVLGLL 240
           KTWLS +ITDQ+TCLDALQEL+ + + N  ++  +++AM+NS+EF SNSLAI +K+LGLL
Sbjct: 180 KTWLSATITDQETCLDALQELSTTKHFNQTLVDQVKTAMENSTEFVSNSLAIVAKILGLL 239

Query: 241 GKVDIPVHRRLLSDHSD--SGFPNWVGAGDRRLLQEANPKPDATVAQDGSGDYDTIKAAV 298
               IP+HRRLL       S FP WV  GDRRLLQE+ P P+ TVA+DGSGD +T++ AV
Sbjct: 240 SDFKIPIHRRLLGFERSHISEFPQWVSFGDRRLLQESKPTPNVTVAKDGSGDCETLREAV 299

Query: 299 AAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGTPTFAT 358
             + KKS ++F+I+VK+G Y ENVILDKS+WNVM+YG+GK  TIVSGSLNFVDGTPTF+T
Sbjct: 300 GKIPKKSESKFIIHVKEGVYVENVILDKSKWNVMIYGEGKDKTIVSGSLNFVDGTPTFST 359

Query: 359 ATVAVAGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVFYRCSFNAYQDTLYAHSNRQF 418
            T AVAG+GF A+DM FINTAG EKHQAVAFRSGSD SVFYRC+F+A+QDTLYAHSNRQF
Sbjct: 360 PTFAVAGKGFFARDMKFINTAGAEKHQAVAFRSGSDMSVFYRCAFDAFQDTLYAHSNRQF 419

Query: 419 YRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTL 478
           YRDCDITGTIDFIFGNAAVVFQNCNI PRQPL NQFNTITAQGKKDPNQNTGISIQKC  
Sbjct: 420 YRDCDITGTIDFIFGNAAVVFQNCNIQPRQPLANQFNTITAQGKKDPNQNTGISIQKCKF 479

Query: 479 SRFDDKLTAATYLGRPWKEFSTTVIMQSTIGPFLNALGWKEWVSGVDPPTSIFYAEYQNV 538
           S FD+ +TA TYLGRPWK++STTVIMQS IG FL  LGW  WVSGVDPP +IFYAEYQN 
Sbjct: 480 SAFDN-VTAPTYLGRPWKDYSTTVIMQSDIGSFLRPLGWISWVSGVDPPATIFYAEYQNT 538

Query: 539 GLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGSEWLAEANVQYQESL 588
           G G+   GRVKW GY+P LT DEA KF V +FIQGSEWL + +V +Q  L
Sbjct: 539 GSGANVDGRVKWTGYKPALTVDEAGKFAVDSFIQGSEWLPKTSVTFQSML 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255584428|ref|XP_002532945.1| Pectinesterase-3 precursor, putative [Ricinus communis] gi|223527274|gb|EEF29429.1| Pectinesterase-3 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225441979|ref|XP_002265217.1| PREDICTED: pectinesterase 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449453399|ref|XP_004144445.1| PREDICTED: pectinesterase 3-like [Cucumis sativus] gi|449528768|ref|XP_004171375.1| PREDICTED: pectinesterase 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356520172|ref|XP_003528738.1| PREDICTED: pectinesterase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|6093739|sp|Q43111.1|PME3_PHAVU RecName: Full=Pectinesterase 3; Short=PE 3; AltName: Full=Pectin methylesterase 3; Flags: Precursor gi|732913|emb|CAA59482.1| pectinesterase [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|356559248|ref|XP_003547912.1| PREDICTED: pectinesterase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|384597515|gb|AFI23414.1| pectin methylesterase [Coffea arabica] Back     alignment and taxonomy information
>gi|297847788|ref|XP_002891775.1| ATPME1 [Arabidopsis lyrata subsp. lyrata] gi|297337617|gb|EFH68034.1| ATPME1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297834300|ref|XP_002885032.1| hypothetical protein ARALYDRAFT_318218 [Arabidopsis lyrata subsp. lyrata] gi|297330872|gb|EFH61291.1| hypothetical protein ARALYDRAFT_318218 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query588
TAIR|locus:2197061586 PME1 "pectin methylesterase 1" 0.986 0.989 0.548 6.4e-170
TAIR|locus:2091070968 ATPMEPCRC [Arabidopsis thalian 0.855 0.519 0.556 1.4e-144
TAIR|locus:2175319564 AT5G04960 [Arabidopsis thalian 0.828 0.863 0.459 1.1e-108
TAIR|locus:2197056587 PME2 "pectin methylesterase 2" 0.894 0.896 0.423 3.3e-102
TAIR|locus:2103227561 RHS12 "root hair specific 12" 0.722 0.757 0.465 3.9e-99
TAIR|locus:2154277587 PMEPCRF "pectin methylesterase 0.880 0.882 0.407 3.9e-99
TAIR|locus:2078057 669 AT3G05610 [Arabidopsis thalian 0.879 0.772 0.402 2.8e-98
TAIR|locus:2084751527 AT3G43270 [Arabidopsis thalian 0.801 0.893 0.421 5.9e-96
TAIR|locus:2133224573 ATPMEPCRB [Arabidopsis thalian 0.518 0.532 0.541 1.8e-95
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.549 0.632 0.514 6.1e-95
TAIR|locus:2197061 PME1 "pectin methylesterase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1652 (586.6 bits), Expect = 6.4e-170, P = 6.4e-170
 Identities = 325/593 (54%), Positives = 406/593 (68%)

Query:     1 METIRSFKGYGKVDELEQQAFRRKTRKRXXXXXXXXXXXXXXXXXXXXXXXXHKNKNDSS 60
             M+++ SFKGYGKVDE +  A ++KTRKR                        HKNKN+S+
Sbjct:     1 MDSVNSFKGYGKVDEAQDLALKKKTRKRLLLLSISVVVLIAVIIAAVVATVVHKNKNEST 60

Query:    61 SDNMPATQLTPAASLKAVCSVTRYPXXXXXXXXXXXXXNVTKDPEILFKLSLQVAMNELG 120
                 P  +LTP+ SLKA+CSVTR+P             N T DPE LFKLSL+V ++EL 
Sbjct:    61 PS--PPPELTPSTSLKAICSVTRFPESCISSISKLPSSNTT-DPETLFKLSLKVIIDELD 117

Query:   121 KLQNYPSKLKQQTKDPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKKIQDL 180
              + + P KL ++T+D ++  AL+VC  L +DALD +N+++S++     +K LSS KI+DL
Sbjct:   118 SISDLPEKLSKETEDERIKSALRVCGDLIEDALDRLNDTVSAIDDEEKKKTLSSSKIEDL 177

Query:   181 KTWLSTSITDQDTCLDALQEL--NVSHYQNSNILKDIRSAMQNSSEFASNSLAIGSKVLG 238
             KTWLS ++TD +TC D+L EL  N + Y NS I ++++SAM  S+EF SNSLAI SK+L 
Sbjct:   178 KTWLSATVTDHETCFDSLDELKQNKTEYANSTITQNLKSAMSRSTEFTSNSLAIVSKILS 237

Query:   239 LLGKVDIPVHRR--LLSDHSDSG--FPNWVGAGDRRLLQEANPKPDATVAQDGSGDYDTI 294
              L  + IP+HRR  L+S H      F  W     RRLLQ A  KPD TVA DG+GD  T+
Sbjct:   238 ALSDLGIPIHRRRRLMSHHHQQSVDFEKWAR---RRLLQTAGLKPDVTVAGDGTGDVLTV 294

Query:   295 KAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGXX 354
               AVA V KKS   FVIYVK GTY ENV++DKS+WNVM+YGDGK  TI+SGS NFVDG  
Sbjct:   295 NEAVAKVPKKSLKMFVIYVKSGTYVENVVMDKSKWNVMIYGDGKGKTIISGSKNFVDGTP 354

Query:   355 XXXXXXXXXXGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVFYRCSFNAYQDTLYAHS 414
                       G+GFI KD+  INTAG  KHQAVAFRSGSD SV+Y+CSF+ +QDTLY HS
Sbjct:   355 TYETATFAIQGKGFIMKDIGIINTAGAAKHQAVAFRSGSDFSVYYQCSFDGFQDTLYPHS 414

Query:   415 NRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTITAQGKKDPNQNTGISIQ 474
             NRQFYRDCD+TGTIDFIFG+AAVVFQ C I+PRQPL NQFNTITAQGKKDPNQ++G+SIQ
Sbjct:   415 NRQFYRDCDVTGTIDFIFGSAAVVFQGCKIMPRQPLSNQFNTITAQGKKDPNQSSGMSIQ 474

Query:   475 KCTLSRFDDKLTAATYLGRPWKEFSTTVIMQSTIGPFLNALGWKEWVSGVDPPTSIFYAE 534
             +CT+S  +  + A TYLGRPWKEFSTTVIM++ IG  +   GW  WVSGVDPP SI Y E
Sbjct:   475 RCTISA-NGNVIAPTYLGRPWKEFSTTVIMETVIGAVVRPSGWMSWVSGVDPPASIVYGE 533

Query:   535 YQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGSEWLAEANVQYQES 587
             Y+N G GS  + RVKWAGY+P ++  EAAKFTV   + G++W+    V  Q S
Sbjct:   534 YKNTGPGSDVTQRVKWAGYKPVMSDAEAAKFTVATLLHGADWIPATGVINQLS 586
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005618 "cell wall" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0005576 "extracellular region" evidence=ISS
TAIR|locus:2091070 ATPMEPCRC [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175319 AT5G04960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197056 PME2 "pectin methylesterase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103227 RHS12 "root hair specific 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078057 AT3G05610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q43867PME1_ARATH3, ., 1, ., 1, ., 1, 10.59350.98630.9897yesno
Q43111PME3_PHAVU3, ., 1, ., 1, ., 1, 10.63020.97610.9879N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.991
3rd Layer3.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query588
PLN02314586 PLN02314, PLN02314, pectinesterase 0.0
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 0.0
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-169
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-160
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-159
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-156
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-154
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-146
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-143
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-140
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-135
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-135
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-131
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-127
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-126
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-124
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-115
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-112
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-109
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-104
PLN02197588 PLN02197, PLN02197, pectinesterase 1e-102
PLN02773317 PLN02773, PLN02773, pectinesterase 1e-58
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-57
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 8e-56
PLN02432293 PLN02432, PLN02432, putative pectinesterase 3e-55
PLN02304379 PLN02304, PLN02304, probable pectinesterase 4e-50
PLN02671359 PLN02671, PLN02671, pectinesterase 2e-47
PLN02497331 PLN02497, PLN02497, probable pectinesterase 4e-46
PLN02634359 PLN02634, PLN02634, probable pectinesterase 5e-45
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 1e-39
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 2e-34
PLN02176340 PLN02176, PLN02176, putative pectinesterase 8e-33
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 9e-33
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 3e-31
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 4e-22
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 1e-18
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information 
 Score = 1008 bits (2607), Expect = 0.0
 Identities = 424/590 (71%), Positives = 495/590 (83%), Gaps = 6/590 (1%)

Query: 1   METIRSFKGYGKVDELEQQAFRRKTRKRVIILIISSIVLVAVIIGAVIGVVVHKNKNDSS 60
           M++I SFKGYGKVDE E+QAFRRKTRKR+II+++S +VLVA+IIGAV+G VVHK KN+S+
Sbjct: 1   MDSINSFKGYGKVDEAEEQAFRRKTRKRLIIIVVSVVVLVAIIIGAVVGTVVHKRKNESN 60

Query: 61  SDNMPATQLTPAASLKAVCSVTRYPDSCFSSISSIDASNVTKDPEILFKLSLQVAMNELG 120
               P  +LTPA SLKAVCSVTRYP+SC SSISS+  SN T DPE LFKLSL+VA++EL 
Sbjct: 61  P--SPPPELTPATSLKAVCSVTRYPESCISSISSLPTSN-TTDPETLFKLSLKVAIDELS 117

Query: 121 KLQNYPSKLKQQTKDPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKKIQDL 180
           KL + P KL  +T D ++  AL+VCETLFDDA+D +N+S+SSMQVG GEK+LSS KI DL
Sbjct: 118 KLSDLPQKLINETNDERLKSALRVCETLFDDAIDRLNDSISSMQVGEGEKILSSSKIDDL 177

Query: 181 KTWLSTSITDQDTCLDALQELNVSHYQNSNILKDIRSAMQNSSEFASNSLAIGSKVLGLL 240
           KTWLS +ITDQ+TC+DALQEL+ + Y NS +  ++++AM NS+EF SNSLAI SK+LG+L
Sbjct: 178 KTWLSATITDQETCIDALQELSQNKYANSTLTNEVKTAMSNSTEFTSNSLAIVSKILGIL 237

Query: 241 GKVDIPVHRRLLSDHSD--SGFPNWVGAGDRRLLQEANPKPDATVAQDGSGDYDTIKAAV 298
             + IP+HRRLLS H D  SGFP+WV  GDRRLLQE  P P+ TVA+DGSGD  TI  AV
Sbjct: 238 SDLGIPIHRRLLSFHHDLSSGFPSWVNIGDRRLLQEEKPTPNVTVAKDGSGDVKTINEAV 297

Query: 299 AAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGTPTFAT 358
           A++ KKS +RFVIYVK+GTY ENV+LDKS+WNVM+YGDGK  TI+SGSLNFVDGTPTF+T
Sbjct: 298 ASIPKKSKSRFVIYVKEGTYVENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFST 357

Query: 359 ATVAVAGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVFYRCSFNAYQDTLYAHSNRQF 418
           AT A AG+GFIAKDM FINTAG  KHQAVAFRSGSD SVFY+CSF+A+QDTLYAHSNRQF
Sbjct: 358 ATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQF 417

Query: 419 YRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTL 478
           YRDCDITGTIDFIFGNAAVVFQNCNI PRQPLPNQFNTITAQGKKDPNQNTGISIQ+CT+
Sbjct: 418 YRDCDITGTIDFIFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTI 477

Query: 479 SRFDDKLTAATYLGRPWKEFSTTVIMQSTIGPFLNALGWKEWVSGVDPPTSIFYAEYQNV 538
           S F + LTA TYLGRPWK+FSTTVIMQS IG FLN LGW  WVSGVDPP++IFYAEYQN 
Sbjct: 478 SAFGN-LTAPTYLGRPWKDFSTTVIMQSYIGSFLNPLGWISWVSGVDPPSTIFYAEYQNT 536

Query: 539 GLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGSEWLAEANVQYQESL 588
           G GS    RVKWAGY+P +T DEAAKFTV  FIQG++WL   +V +Q SL
Sbjct: 537 GPGSDVDKRVKWAGYKPNITDDEAAKFTVATFIQGADWLPATSVTFQSSL 586

Length = 586
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 588
PLN02314586 pectinesterase 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02176340 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02773317 pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02432293 putative pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.95
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.94
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.92
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.39
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.64
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.61
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.51
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.12
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.3
PLN02793443 Probable polygalacturonase 97.15
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.79
PLN02218431 polygalacturonase ADPG 96.57
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 96.52
KOG1777 625 consensus Putative Zn-finger protein [General func 96.47
PLN03010409 polygalacturonase 96.15
PLN03003456 Probable polygalacturonase At3g15720 95.98
PLN02682369 pectinesterase family protein 95.65
PLN02773317 pectinesterase 95.51
PRK10531422 acyl-CoA thioesterase; Provisional 95.45
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 95.44
PLN02155394 polygalacturonase 95.32
PLN02671359 pectinesterase 95.16
PLN02634359 probable pectinesterase 95.12
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.09
PLN02665366 pectinesterase family protein 94.73
smart00656190 Amb_all Amb_all domain. 94.67
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 94.63
PLN02432293 putative pectinesterase 94.35
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.14
PLN02480343 Probable pectinesterase 94.1
PLN02304379 probable pectinesterase 94.01
PLN02176340 putative pectinesterase 93.97
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 93.56
PLN02497331 probable pectinesterase 93.44
PLN02484587 probable pectinesterase/pectinesterase inhibitor 93.28
PLN02197588 pectinesterase 92.89
PLN02416541 probable pectinesterase/pectinesterase inhibitor 92.6
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 92.45
PLN02170529 probable pectinesterase/pectinesterase inhibitor 92.41
PLN02506537 putative pectinesterase/pectinesterase inhibitor 92.31
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 92.28
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 92.28
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 92.2
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.19
PLN02916502 pectinesterase family protein 92.01
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 91.99
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 91.93
PLN02313587 Pectinesterase/pectinesterase inhibitor 91.89
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 91.48
PLN02314586 pectinesterase 91.43
PLN02201520 probable pectinesterase/pectinesterase inhibitor 90.97
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 90.81
PLN02301548 pectinesterase/pectinesterase inhibitor 90.7
PLN02468565 putative pectinesterase/pectinesterase inhibitor 90.35
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 90.11
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 89.78
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 88.46
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 87.65
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 86.26
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 83.01
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 81.73
PLN02188404 polygalacturonase/glycoside hydrolase family prote 80.87
>PLN02314 pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=5e-153  Score=1267.92  Aligned_cols=584  Identities=72%  Similarity=1.166  Sum_probs=525.5

Q ss_pred             CcccccCCCCCCcchhhHHhhhhcccCceehhHHHHHHHHHHHhheeEEEeeecCCCCCCCCCCCcccCCcchHHHhccC
Q 007830            1 METIRSFKGYGKVDELEQQAFRRKTRKRVIILIISSIVLVAVIIGAVIGVVVHKNKNDSSSDNMPATQLTPAASLKAVCS   80 (588)
Q Consensus         1 m~~~~~~~~~~~~~e~~~~~~~~k~~k~~~i~~~s~illv~~vi~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~C~   80 (588)
                      |++|++|+.|++++|.++....||++||++|+++|++|||++||++++++..|+++++++..+..  ...+...|+++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~vi~~v~~~~~~~~~~~~~~~~~~--~~~~~~~Iks~C~   78 (586)
T PLN02314          1 MDSINSFKGYGKVDEAEEQAFRRKTRKRLIIIVVSVVVLVAIIIGAVVGTVVHKRKNESNPSPPP--ELTPATSLKAVCS   78 (586)
T ss_pred             CcchhhhcccCCccchhhhhhhhcccceehHHHHHHHHHHHHHHhheeEEeccccCCCCCCCCcc--ccCHHHHHHHhcc
Confidence            89999999999998854444455657899999999999999999999988877554433211111  1224469999999


Q ss_pred             CCCChhchHhhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhHhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 007830           81 VTRYPDSCFSSISSIDASNVTKDPEILFKLSLQVAMNELGKLQNYPSKLKQQTKDPQVIEALKVCETLFDDALDHVNESL  160 (588)
Q Consensus        81 ~T~yp~lC~~sLss~~~s~~~~dp~~L~~~al~~t~~~~~~a~~~~~~l~~~~~d~~~k~AL~DC~el~~~Aid~L~~S~  160 (588)
                      +|+||++|+++|++.|.+. ..+|++|++++|+++++++.++...+++|....++++++.||+||+|+|++|+|+|++|+
T Consensus        79 ~T~YP~lC~sSLs~~p~s~-~~~p~~L~~~al~vti~~a~~a~~~~~~L~~~~~~~~~k~AL~DC~EllddAid~L~~Sl  157 (586)
T PLN02314         79 VTRYPESCISSISSLPTSN-TTDPETLFKLSLKVAIDELSKLSDLPQKLINETNDERLKSALRVCETLFDDAIDRLNDSI  157 (586)
T ss_pred             CCCChHHHHHHHhcccCcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998766 789999999999999999999999999887656889999999999999999999999999


Q ss_pred             HHhhcCCCcccccccchhhHHHHHHHhhcchhHHHHHhhcccccccCCchhHhHHHHHHHhHHHHHHhHHHHhhhhcccc
Q 007830          161 SSMQVGSGEKLLSSKKIQDLKTWLSTSITDQDTCLDALQELNVSHYQNSNILKDIRSAMQNSSEFASNSLAIGSKVLGLL  240 (588)
Q Consensus       161 ~~l~~~~~~~~l~~~~~~Dl~twLSAAlT~q~TC~DGF~~~~~~~~~~~~~~~~l~~~~~~~~~L~SNaLAIv~~l~~~~  240 (588)
                      ++|...+....+....++|++||||||||||+||+|||++.....+.++.+++.|+..+.++.||+||||||++.+...+
T Consensus       158 ~~l~~~~~~~~~~~~~~~Dv~TWLSAALT~q~TClDGF~e~~~~k~~~s~vk~~~~~~l~n~~eLtSNaLAIi~~l~~~~  237 (586)
T PLN02314        158 SSMQVGEGEKILSSSKIDDLKTWLSATITDQETCIDALQELSQNKYANSTLTNEVKTAMSNSTEFTSNSLAIVSKILGIL  237 (586)
T ss_pred             HHHhhcccccccccccHHHHHhHHHHHhcCHhHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            99975432111114568999999999999999999999864200000456889999999999999999999999998877


Q ss_pred             CCccccccccccCCCC--CCCCCcccccCccccccccCCCCcEEEcCCCCCCcccHHHHHHHhhcCCCceEEEEEecCee
Q 007830          241 GKVDIPVHRRLLSDHS--DSGFPNWVGAGDRRLLQEANPKPDATVAQDGSGDYDTIKAAVAAVRKKSPTRFVIYVKKGTY  318 (588)
Q Consensus       241 ~~~~~~~~r~ll~~~~--~~~~p~W~~~~dr~ll~~~~~~~~~vV~~dg~g~f~TIq~Al~aap~~~~~~~~I~I~~G~Y  318 (588)
                      +++.++.+|||++++.  .+|||+|++++|||||+..+++++++|++||+|+|+|||+||+++|+++.+|++||||||+|
T Consensus       238 ~~~~~~~~~~l~~~~~~~~~~~p~w~~~~~rrll~~~~~~~~~~Va~dGsg~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y  317 (586)
T PLN02314        238 SDLGIPIHRRLLSFHHDLSSGFPSWVNIGDRRLLQEEKPTPNVTVAKDGSGDVKTINEAVASIPKKSKSRFVIYVKEGTY  317 (586)
T ss_pred             ccccccccccccccccccccCCCccccccchhhccccCCCccEEECCCCCCCccCHHHHHhhccccCCceEEEEEcCceE
Confidence            7765556789987521  24899999999999999888999999999999999999999999999999999999999999


Q ss_pred             eeeEEeCCCCCCEEEEecCCCceEEeccccccCCCCCccceEEEEEeccEEEEEeEEeeCCCCCCCceEEEEecCCceEE
Q 007830          319 RENVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGTPTFATATVAVAGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVF  398 (588)
Q Consensus       319 ~E~v~I~k~~~~itl~G~g~~~tiI~~~~~~~dg~~t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~~  398 (588)
                      +|+|.|+++|+||+|+|+|.++|||+|+.+..||.+|+.+|||.|.|++|+++||||+|++|+.+|||||||+++|+++|
T Consensus       318 ~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f  397 (586)
T PLN02314        318 VENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVF  397 (586)
T ss_pred             EEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeEEeeccccccccccceeeeecEEeccceeeecccceeeeeeEEEecCCCCCCceEEEecCCCCCCCCceEEEEccEE
Q 007830          399 YRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTL  478 (588)
Q Consensus       399 ~~c~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIfG~~~~vf~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~v~~~c~i  478 (588)
                      |||+|+|||||||+|++|||||+|+|+|+||||||+|++|||+|+|++|+|.++|.++||||||+++++++||||+||+|
T Consensus       398 ~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i  477 (586)
T PLN02314        398 YQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTI  477 (586)
T ss_pred             EeeEEEeccchheeCCCCEEEEeeEEEeccceeccCceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEE
Confidence            99999999999999999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             eecCCcccceeeecccCcccceEEEEcCCCCCccCCCCccCCCCCCCCCCccEEEEecccCCCCCCCCccccCCCCCCCC
Q 007830          479 SRFDDKLTAATYLGRPWKEFSTTVIMQSTIGPFLNALGWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLT  558 (588)
Q Consensus       479 ~~~~~~~~~~~yLGRpW~~~s~~v~~~s~~~~~i~p~Gw~~w~~~~~~~~t~~~~Ey~n~Gpga~~~~Rv~w~~~~~~~~  558 (588)
                      +++++ +..++||||||++|+|||||+|+|+++|+|+||.+|+++++..+|+||+||+|+|||+++++||+|++++++++
T Consensus       478 ~~~~~-~~~~~yLGRpW~~ysr~v~~~s~i~~~I~p~GW~~w~~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~~~~~~l~  556 (586)
T PLN02314        478 SAFGN-LTAPTYLGRPWKDFSTTVIMQSYIGSFLNPLGWISWVSGVDPPSTIFYAEYQNTGPGSDVDKRVKWAGYKPNIT  556 (586)
T ss_pred             ecCCc-ccccccccCCCCCCceEEEEecccCCccccccCCccCCCCCCCCceEEEEecccCCCCCcccccccccccccCC
Confidence            99987 66689999999999999999999999999999999998762346999999999999999999999999998889


Q ss_pred             HHHHhcCchhccccCCCCccCCCCCCCCCC
Q 007830          559 TDEAAKFTVGNFIQGSEWLAEANVQYQESL  588 (588)
Q Consensus       559 ~~~a~~~t~~~~~~g~~W~p~~~~p~~~g~  588 (588)
                      ++||.+||+.+||+|++|+|.+||||.+||
T Consensus       557 ~~ea~~ft~~~fi~g~~Wl~~~~vp~~~g~  586 (586)
T PLN02314        557 DDEAAKFTVATFIQGADWLPATSVTFQSSL  586 (586)
T ss_pred             HHHHHHhhHHhhcCCCCcCCCCCCCcCCCC
Confidence            999999999999999999999999999997

>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query588
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-87
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 6e-87
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 7e-17
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 9e-17
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 8e-16
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 1e-13
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  320 bits (820), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 160/314 (50%), Positives = 200/314 (63%), Gaps = 5/314 (1%)
Query: 279 PDATVAQDGSGDYDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGK 338
           P+  VA DGSGDY T+  AVAA  + S TR+VI +K G YRENV + K + N+M  GDG+
Sbjct: 7   PNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGR 66
Query: 339 TMTIVSGSLNFVDGXXXXXXXXXXXXGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVF 398
           T TI++ S N  DG            G GF+A+D+TF NTAG  KHQAVA R GSD S F
Sbjct: 67  TSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAF 126
Query: 399 YRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTIT 458
           YRC   AYQD+LY HSNRQF+ +C I GT+DFIFGNAAVV Q+C+I  R+P   Q N +T
Sbjct: 127 YRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVT 186
Query: 459 AQGKKDPNQNTGISIQKCTLSRFDD----KLTAATYLGRPWKEFSTTVIMQSTIGPFLNA 514
           AQG+ DPNQNTGI IQK  +    D    + +  TYLGRPWKE+S TV+MQS+I   +N 
Sbjct: 187 AQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINP 246
Query: 515 LGWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGS 574
            GW  W  G     +++Y EYQN G G+ TSGRV W G++   ++ EA  FT G+FI G 
Sbjct: 247 AGWFPW-DGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGG 305
Query: 575 EWLAEANVQYQESL 588
            WL      +   L
Sbjct: 306 SWLKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query588
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-160
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-159
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-126
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-123
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-104
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 7e-32
1x91_A153 Invertase/pectin methylesterase inhibitor family p 2e-30
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 9e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  458 bits (1181), Expect = e-160
 Identities = 166/315 (52%), Positives = 207/315 (65%), Gaps = 5/315 (1%)

Query: 278 KPDATVAQDGSGDYDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDG 337
             +A VAQDG+GDY T+  AVAA   KS TR+VIYVK+GTY+ENV +  ++ N+M+ GDG
Sbjct: 2   IANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDG 61

Query: 338 KTMTIVSGSLNFVDGTPTFATATVAVAGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSV 397
              T ++GSLN VDG+ TF +AT+A  G+GFI +D+   NTAGP K QAVA R G+D SV
Sbjct: 62  MYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSV 121

Query: 398 FYRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPNQFNTI 457
             RC  +AYQDTLYAHS RQFYRD  +TGT+DFIFGNAAVVFQ C ++ R+P   Q N +
Sbjct: 122 INRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMV 181

Query: 458 TAQGKKDPNQNTGISIQKCTLSRFDD----KLTAATYLGRPWKEFSTTVIMQSTIGPFLN 513
           TAQG+ DPNQ TG SIQ C +    D         TYLGRPWKE+S TV+M+S +G  +N
Sbjct: 182 TAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLIN 241

Query: 514 ALGWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQG 573
             GW EW  G     +++Y E+ N G G+ TS RVKW GY       +A  FTV   IQG
Sbjct: 242 PAGWAEW-DGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQG 300

Query: 574 SEWLAEANVQYQESL 588
             WL    V Y + L
Sbjct: 301 GSWLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query588
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.97
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.96
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.96
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.61
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.42
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.65
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.21
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.87
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.82
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.44
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.44
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.42
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.4
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.17
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.17
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.15
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.07
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.02
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.02
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.9
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.86
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.83
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.79
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.55
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.51
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.5
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.47
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.01
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.97
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.85
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.62
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.59
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 95.51
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.49
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.72
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 94.4
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 94.19
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 93.41
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 92.56
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 84.11
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 83.88
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 82.82
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 81.77
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 80.41
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
Probab=100.00  E-value=1.8e-94  Score=751.03  Aligned_cols=311  Identities=53%  Similarity=0.906  Sum_probs=299.9

Q ss_pred             CCCCcEEEcCCCCCCcccHHHHHHHhhcCCCceEEEEEecCeeeeeEEeCCCCCCEEEEecCCCceEEeccccccCCCCC
Q 007830          276 NPKPDATVAQDGSGDYDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGTPT  355 (588)
Q Consensus       276 ~~~~~~vV~~dg~g~f~TIq~Al~aap~~~~~~~~I~I~~G~Y~E~v~I~k~~~~itl~G~g~~~tiI~~~~~~~dg~~t  355 (588)
                      .++++++|++||+|+|+|||+||+++|+++..|++|+|+||+|+|+|.|++.|++|||+|+|+++|+|+++.+..+|.+|
T Consensus         4 ~~~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t   83 (319)
T 1gq8_A            4 TVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTT   83 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCT
T ss_pred             CccceEEECCCCCCCccCHHHHHHhccccCCceEEEEEcCCeEeeeeeccCCCccEEEEEcCCCccEEEecccccCCCCc
Confidence            36789999999999999999999999999999999999999999999999989999999999999999999988889999


Q ss_pred             ccceEEEEEeccEEEEEeEEeeCCCCCCCceEEEEecCCceEEEeeEEeeccccccccccceeeeecEEeccceeeeccc
Q 007830          356 FATATVAVAGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVFYRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNA  435 (588)
Q Consensus       356 ~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~~~~c~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIfG~~  435 (588)
                      +.++||.|.+++|+++||||+|++|+.++|||||++.+|+++|+||+|.|||||||++++||||++|+|+|+||||||++
T Consensus        84 ~~satv~v~a~~f~~~nlt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~  163 (319)
T 1gq8_A           84 FNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNA  163 (319)
T ss_dssp             GGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESC
T ss_pred             cceEEEEEECCCEEEEEeEeEccCCCcCCceEEEEecCCcEEEEEeEECccceeeeecCccEEEEecEEEeeeeEEecCC
Confidence            99999999999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeeeEEEecCCCCCCceEEEecCCCCCCCCceEEEEccEEeecCCcccc-----eeeecccCcccceEEEEcCCCCC
Q 007830          436 AVVFQNCNILPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTLSRFDDKLTA-----ATYLGRPWKEFSTTVIMQSTIGP  510 (588)
Q Consensus       436 ~~vf~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~v~~~c~i~~~~~~~~~-----~~yLGRpW~~~s~~v~~~s~~~~  510 (588)
                      +++||+|+|+++++..++.++||||||+++++++||||+||+|+++++ +.+     ++||||||++|+|+|||+|+|++
T Consensus       164 ~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~-~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~  242 (319)
T 1gq8_A          164 AVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSD-LQPVQSSFPTYLGRPWKEYSRTVVMQSSITN  242 (319)
T ss_dssp             EEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTT-TGGGGGGSCEEEECCSSTTCEEEEESCEECT
T ss_pred             cEEEEeeEEEEecCCCCCceEEEeCCCCCCCCCceEEEECCEEecCCC-ccccccceeEEecccCCCcceEEEEeccCCC
Confidence            999999999999988888999999999999999999999999999987 543     79999999999999999999999


Q ss_pred             ccCCCCccCCCCCCCCCCccEEEEecccCCCCCCCCccccCCCCCCCCHHHHhcCchhccccCCCCccCCCCCCCCCC
Q 007830          511 FLNALGWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGSEWLAEANVQYQESL  588 (588)
Q Consensus       511 ~i~p~Gw~~w~~~~~~~~t~~~~Ey~n~Gpga~~~~Rv~w~~~~~~~~~~~a~~~t~~~~~~g~~W~p~~~~p~~~g~  588 (588)
                      +|+|+||.+|++++ .+++++|+||+|+|||+++++||+|++++++++++||.+||+.+||+|++|+|.++|||.+||
T Consensus       243 ~I~p~GW~~w~~~~-~~~t~~y~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  319 (319)
T 1gq8_A          243 VINPAGWFPWDGNF-ALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             TBCTTCCCCSSTTT-TTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccCcCCCCC-CCCeeEEEEEccccCCCCcccccccccccccCCHHHHHhhhHHhhcCCCCCcCCCCccccCCC
Confidence            99999999999887 889999999999999999999999999888877899999999999999899999999999997
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 588
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-136
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 4e-89
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 2e-29
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 9e-25
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  397 bits (1022), Expect = e-136
 Identities = 166/320 (51%), Positives = 210/320 (65%), Gaps = 5/320 (1%)

Query: 273 QEANPKPDATVAQDGSGDYDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVM 332
           + +   P+  VA DGSGDY T+  AVAA  + S TR+VI +K G YRENV + K + N+M
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60

Query: 333 MYGDGKTMTIVSGSLNFVDGTPTFATATVAVAGRGFIAKDMTFINTAGPEKHQAVAFRSG 392
             GDG+T TI++ S N  DG+ TF +ATVA  G GF+A+D+TF NTAG  KHQAVA R G
Sbjct: 61  FLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVG 120

Query: 393 SDRSVFYRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNILPRQPLPN 452
           SD S FYRC   AYQD+LY HSNRQF+ +C I GT+DFIFGNAAVV Q+C+I  R+P   
Sbjct: 121 SDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSG 180

Query: 453 QFNTITAQGKKDPNQNTGISIQKCTLSRFDD----KLTAATYLGRPWKEFSTTVIMQSTI 508
           Q N +TAQG+ DPNQNTGI IQK  +    D    + +  TYLGRPWKE+S TV+MQS+I
Sbjct: 181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI 240

Query: 509 GPFLNALGWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVG 568
              +N  GW  W  G     +++Y EYQN G G+ TSGRV W G++   ++ EA  FT G
Sbjct: 241 TNVINPAGWFPW-DGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPG 299

Query: 569 NFIQGSEWLAEANVQYQESL 588
           +FI G  WL      +   L
Sbjct: 300 SFIAGGSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query588
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.95
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.95
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.02
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.73
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.98
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.16
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.15
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.3
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.11
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.8
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.77
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.7
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.64
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.49
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.01
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 94.66
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.55
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 94.18
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 92.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 85.87
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 85.32
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=5.9e-98  Score=771.46  Aligned_cols=313  Identities=53%  Similarity=0.901  Sum_probs=302.0

Q ss_pred             ccCCCCcEEEcCCCCCCcccHHHHHHHhhcCCCceEEEEEecCeeeeeEEeCCCCCCEEEEecCCCceEEeccccccCCC
Q 007830          274 EANPKPDATVAQDGSGDYDTIKAAVAAVRKKSPTRFVIYVKKGTYRENVILDKSRWNVMMYGDGKTMTIVSGSLNFVDGT  353 (588)
Q Consensus       274 ~~~~~~~~vV~~dg~g~f~TIq~Al~aap~~~~~~~~I~I~~G~Y~E~v~I~k~~~~itl~G~g~~~tiI~~~~~~~dg~  353 (588)
                      ++.++|++||++||+|+|+|||+||+++|.++..|++|+|+||+|+|+|+|+++|++|+|+|+|++.|+|+++.+..+|.
T Consensus         2 ~~~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~   81 (319)
T d1gq8a_           2 SSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGS   81 (319)
T ss_dssp             CCSSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTC
T ss_pred             CCcCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             CCccceEEEEEeccEEEEEeEEeeCCCCCCCceEEEEecCCceEEEeeEEeeccccccccccceeeeecEEeccceeeec
Q 007830          354 PTFATATVAVAGRGFIAKDMTFINTAGPEKHQAVAFRSGSDRSVFYRCSFNAYQDTLYAHSNRQFYRDCDITGTIDFIFG  433 (588)
Q Consensus       354 ~t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~~~~c~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIfG  433 (588)
                      +|+.++||.|.+++|+++||+|+|++|+.++|||||++.+|+++||+|+|+|||||||++.+||||++|+|+|+||||||
T Consensus        82 ~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG  161 (319)
T d1gq8a_          82 TTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFG  161 (319)
T ss_dssp             CTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEE
T ss_pred             ccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeeEEEecCCCCCCceEEEecCCCCCCCCceEEEEccEEeecCCcccc-----eeeecccCcccceEEEEcCCC
Q 007830          434 NAAVVFQNCNILPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTLSRFDDKLTA-----ATYLGRPWKEFSTTVIMQSTI  508 (588)
Q Consensus       434 ~~~~vf~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~v~~~c~i~~~~~~~~~-----~~yLGRpW~~~s~~v~~~s~~  508 (588)
                      +++++||+|+|+++++..++.++||||+|+++.+++||||+||+|+++++ +.+     ++||||||++|+|+||++|+|
T Consensus       162 ~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~-~~~~~~~~~~yLGRpW~~~s~vvf~~t~l  240 (319)
T d1gq8a_         162 NAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSD-LQPVQSSFPTYLGRPWKEYSRTVVMQSSI  240 (319)
T ss_dssp             SCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTT-TGGGGGGSCEEEECCSSTTCEEEEESCEE
T ss_pred             CceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCC-ccccccccceeccCCCCCcceEEEEeccc
Confidence            99999999999999988888999999999999999999999999999987 432     689999999999999999999


Q ss_pred             CCccCCCCccCCCCCCCCCCccEEEEecccCCCCCCCCccccCCCCCCCCHHHHhcCchhccccCCCCccCCCCCCCCCC
Q 007830          509 GPFLNALGWKEWVSGVDPPTSIFYAEYQNVGLGSPTSGRVKWAGYRPTLTTDEAAKFTVGNFIQGSEWLAEANVQYQESL  588 (588)
Q Consensus       509 ~~~i~p~Gw~~w~~~~~~~~t~~~~Ey~n~Gpga~~~~Rv~w~~~~~~~~~~~a~~~t~~~~~~g~~W~p~~~~p~~~g~  588 (588)
                      +++|+|+||.+|++.+ ..++++|+||+|+|||+++++||+|++++.+|+++||.+||..+||+|++|+|.++|||.+||
T Consensus       241 ~~~I~p~GW~~w~~~~-~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         241 TNVINPAGWFPWDGNF-ALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             CTTBCTTCCCCSSTTT-TTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             ccccccccccccCCCC-ccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            9999999999999887 889999999999999999999999999888889999999999999999889999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure