Citrus Sinensis ID: 007837

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
Protein Sequence
MKHKTHPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVG
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEEEEEEcccccccccEEEEEEEEEcEEccEEEcHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEHHHHHHHHccccccEEccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHcccccccccccccEEEEEEcccccccccEEEEHHHHHHHcccccccccccEEEEcccccEEEEEEEEEcccccccEEEcccHHHHHccccccccEEEEEEEccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccEEEEEHHcccccccccccccccEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEEEEEEEEEcccccccccHHHHHHHHHccccccEHHHHEHEEHHccccHHHcccHHHHHccccccccccccccccEEEEEEEEHHHEEEEccccccEHHHHcccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccHHccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccHHccccccccccHHHHHHccccccHccHHHHHEEccHccccccccEEEcHHHHHHHccccccccccEEEEEcccccEEEEEEEEcccccccEEEEccccHHHHHcccccccEEEEEEcccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccEEEEccHHHHHHHccHHHHHHHcccccccccEEEEEEccEEEEcccccEccccEEEEEcccc
Coil and Loop (DISEMBL)
mkhkthpcnpvalSFISVSVFIFNLDltclscnyCYLVLQILNIRCFVFCAAILTLILCVYRSIyeegrfcdtfhvnasgwrccescgkrvhcgcitsvhaftlldaggiecmtcarknvlvaptpswppslfyqtpfperikdlsvknwtqlagsgpvpwrqapslfnssipqpelrprlpyevdlsagidrinaserlsvpslekrKLEDFSERLMngglksgsrdipenanagsncdmqpssclnkpqqsstlkddsstphfglavsyaspsetnsqigvsgshlrpvvqpplvkqfhgnlpngadslgetqvrngrprvdargrsqllprywprftdqdlqqisgdsnsvITPLFEKMLsasdagrigrlvlpkkcaeayfppisqpeglplkvqdskgKEWIFQFrfwpnnnsrmyvLEGVTPCiqnmqlqagdivtfsrlepegklvmgfrkassasasdqdneankagtgipanghaeladpsswskvdksgyiaTEALgakssisrkrknttlgskskrlkieNEDVIELKLTWEEaqgllrpppnnvpsvvviegyefeeyedapilgkptifatdnvg
Flexible Loop (DISEMBL)
mkhkthpcnpvALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFnssipqpelrPRLPYEVDLSAGIdrinaserlsvpslekrkledFSERLmngglksgsrdiPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPngadslgetqvrngrprvdargrsqllprywPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAyfppisqpeglPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAssasasdqdneaNKAGTGIPANGHAELADPSSWSKVDKSGYIATealgakssisrkrknttlgskskrlkienedvIELKLTWeeaqgllrpppnnvpsVVVIEGYEFEeyedapilgkptifatdnvg
Low Complexity Region (SEG)
MKHKTHPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRpppnnvpsvvvIEGYEFEEYEDAPILGKPTIFATDNVG
Disordered region (IsUnstruct)
*******CNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWR************************************************************************************************************************************************************************LLPRYWPRFTDQDLQQI****NSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLV*******************************************************************************EDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFA*****
Disordered Region (DISOPRED)
********NPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNV*********************************************************************************************************************************************************************************************************************************************LFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMG******************************************************************************DVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIF******
Disordered Region (DISEMBL)
MKHKTHPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCD*********************TPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGF*****************AGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVG
Disordered Region (DISPRO)
*****HPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQT*********SVKNWTQ**GSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENA**************************************************************************************************LPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAS**************************************************************SKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATD***
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKHKTHPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	588	2.2.26 [Sep-21-2011]
Q0D5G4	955	B3 domain-containing prot	yes	no	0.879	0.541	0.466	1e-132
O65420	713	B3 domain-containing tran	yes	no	0.812	0.670	0.447	1e-107
Q8W4L5	790	B3 domain-containing tran	no	no	0.795	0.592	0.414	1e-93
Q5CCK4	780	B3 domain-containing tran	no	no	0.467	0.352	0.596	1e-92
Q6Z3U3	949	B3 domain-containing prot	no	no	0.457	0.283	0.546	4e-80
Q7XKC4	438	Putative B3 domain-contai	no	no	0.181	0.244	0.444	9e-19
Q7XKC5	433	B3 domain-containing prot	no	no	0.173	0.235	0.456	3e-18
Q9LW31	313	B3 domain-containing tran	no	no	0.185	0.348	0.409	3e-18
Q6Z1Z3	362	B3 domain-containing prot	no	no	0.173	0.281	0.407	7e-16
A4LBC0	402	B3 domain-containing prot	no	no	0.183	0.268	0.381	9e-16

>sp|Q0D5G4|Y7633_ORYSJ B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2

 Score =  473 bits (1217), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 279/598 (46%), Positives = 359/598 (60%), Gaps = 81/598 (13%)

Query: 65  YEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARK-NVLVA 123
           +E G FC+TFH+  +GWR CESCGKR+HCGCI SVHAF  LDAGG+EC+ CARK +  +A
Sbjct: 119 FEHGGFCETFHLEVAGWRNCESCGKRLHCGCIVSVHAFVHLDAGGVECVMCARKSHAAMA 178

Query: 124 PTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPY 183
           P+  W  S+       +R KD  VK+W   AG     WRQ  ++++ S  Q +L+ RL +
Sbjct: 179 PSQIWSSSMHMAQNVADR-KDNFVKSWRPPAGQFSSQWRQN-NMWSMSTMQSDLQQRLAF 236

Query: 184 EVDLSAGIDRINASERLSVPSLEKR--KLEDFS-----------ERLMNGGLKSGSRD-- 228
           E D  +G +++    R  + + EK+   + D S           ER  NG  +  + D  
Sbjct: 237 EFDRPSGSEKLLPG-RTFIHAHEKKFDDMHDRSTTPAGMNQIMRERYANGHTQHTTLDPT 295

Query: 229 ---------------IPENANAGSN-------------CDMQPSSCLNKPQQSSTLKDDS 260
                             + +AG N             C    ++        S LKDD 
Sbjct: 296 YAYTLYHREGTNPNLHDHSHHAGENDHLTARKGVTSDPCSSVSTTFKLDSHHPSILKDDP 355

Query: 261 STPHFGLAVSYASPSETNSQIGVSGSHLRP-VVQPPLVKQFHGNLPNGADSLGETQVRNG 319
           S    GL+ +++S +     I +  +  +  +    L KQF+ +  +  D+  + Q+RNG
Sbjct: 356 SAVPAGLSSNFSSANGPKDHIRIGPTQQQQQMASSSLQKQFYSH--SVIDNDFQAQLRNG 413

Query: 320 RPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKK 379
           RPR+DA+ RSQLLPRYWPR TDQ+LQ +SGDSNSVITPLFEKMLSASDAGRIGRLVLPKK
Sbjct: 414 RPRMDAKARSQLLPRYWPRITDQELQHLSGDSNSVITPLFEKMLSASDAGRIGRLVLPKK 473

Query: 380 CAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGD 439
           CAEAYFP ISQ EGLPLKVQD+ GKEW+FQFRFWPNNNSRMYVLEGVTPCIQ+MQLQAGD
Sbjct: 474 CAEAYFPAISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGD 533

Query: 440 IVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIP---ANGHAELADPS------ 490
            VTFSR++PEGKLVMGFRKA++ SA +QD     A   +P   AN    + D S      
Sbjct: 534 TVTFSRIDPEGKLVMGFRKATNLSA-EQDQPTKPANGVLPPPEANNKVVVPDSSPNAAVP 592

Query: 491 ------------------SWSKVDKSGYIATEALGAKSS--ISRKRKNTTLGSKSKRLKI 530
                             +  K+DK      E  G  SS  +  KRK T++G K KR  +
Sbjct: 593 RPIKVNTESKSSSPVEQATACKIDKGALPQKEGPGTSSSSPLPVKRKATSVGPKIKRFHM 652

Query: 531 ENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVG 588
           ++E+ +ELK+TWEEAQ LLRPPP   PS+VV++G+EFEEYE+ PILG+ T F TD  G
Sbjct: 653 DSEESMELKITWEEAQELLRPPP-KAPSIVVVDGHEFEEYEEPPILGRRTYFVTDQSG 709

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O65420|VAL3_ARATH B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana GN=VAL3 PE=4 SV=3

 Score =  390 bits (1003), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 236/527 (44%), Positives = 319/527 (60%), Gaps = 49/527 (9%)

Query: 63  SIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLV 122
           S YE+G+FCD FH  ASGWRCCESCGKR+HCGCI S  A+TL+DAGGIEC+ CARK   +
Sbjct: 50  SAYEQGKFCDVFHQRASGWRCCESCGKRIHCGCIASASAYTLMDAGGIECLACARKKFAL 109

Query: 123 APTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLP 182
            P  S  PS  +Q+P  E+ KDLS+ NW+    S  + + Q PS  + S+ Q + R R  
Sbjct: 110 GPNFSPSPSFLFQSPISEKFKDLSI-NWSSSTRSNQISY-QPPSCLDPSVLQFDFRNR-- 165

Query: 183 YEVDLSAGIDRIN---ASERLSVPSLEKRK-LEDFSERLMNGGLKSGSRDIPENANAGSN 238
                  G +  +   + ER++  ++EK++ + D   +LM+           EN+    +
Sbjct: 166 ------GGNNEFSQPASKERVTACTMEKKRGMNDMIGKLMS-----------ENSK---H 205

Query: 239 CDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVK 298
             + P   +N      +LK+          V   +P E      + GS+L        + 
Sbjct: 206 YRVSPFPNVNVYHPLISLKEGPCGTQLAFPVPITTPIEKTGHSRLDGSNLWHTRNSSPLS 265

Query: 299 QFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPR--FTDQDLQQISGDSNSVIT 356
           + H +L  GADS  E++ RN    ++  G+ Q++PR+WP+  + +Q LQ  S +S SV+T
Sbjct: 266 RLHNDLNGGADSPFESKSRNVMAHLETPGKYQVVPRFWPKVSYKNQVLQNQSKESESVVT 325

Query: 357 PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNN 416
           PLFEK+LSA+D G+  RLVLPKK AEA+ P +S  +G+PL VQD  GKEW FQFRFWP++
Sbjct: 326 PLFEKILSATDTGK--RLVLPKKYAEAFLPQLSHTKGVPLTVQDPMGKEWRFQFRFWPSS 383

Query: 417 NSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGT 476
             R+YVLEGVTP IQ +QLQAGD V FSRL+PE KL++GFRKAS   +SDQ +       
Sbjct: 384 KGRIYVLEGVTPFIQTLQLQAGDTVIFSRLDPERKLILGFRKASITQSSDQAD------- 436

Query: 477 GIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVI 536
             PA+ H+         +V KS YI  E  G + S S K+K++ + ++SKR K+E  D  
Sbjct: 437 --PADMHSPF-------EVKKSAYITKETPGVECS-SGKKKSSMMITRSKRQKVEKGDDN 486

Query: 537 ELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFA 583
            LKLTWEEAQG L PPPN  PS VVIE YEFEEYE+API+GKPT  A
Sbjct: 487 LLKLTWEEAQGFLLPPPNLTPSRVVIEDYEFEEYEEAPIIGKPTDVA 533

May be involved in plant development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4L5|VAL1_ARATH B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=1 SV=1

 Score =  344 bits (882), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 234/565 (41%), Positives = 307/565 (54%), Gaps = 97/565 (17%)

Query: 58  LCVYR--SIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTC 115
           LC YR  S YE   FC+ FH + SGWR C  C KR+HCGCI S     L+D GG+ C TC
Sbjct: 38  LC-YRCGSAYESSLFCEQFHKDQSGWRECYLCSKRLHCGCIASKVTIELMDYGGVGCSTC 96

Query: 116 ARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQP 175
           A  + L   T    P +F + P    +K L+ +        G    R    LF+    QP
Sbjct: 97  ACCHQLNLNTRGENPGVFSRLP----MKTLADRQHVNGESGG----RNEGDLFS----QP 144

Query: 176 ELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANA 235
                      L  G D                K E+F      G L S     PE+   
Sbjct: 145 -----------LVMGGD----------------KREEFMPHRGFGKLMS-----PESTTT 172

Query: 236 GSNCD----MQPSSCLNKPQQSSTLKDDSSTPHFGL----AVSYASPSETNSQIGVSGSH 287
           G   D    M  SS L +P  +  L  +  +P F       + + SPS++N  +  S S+
Sbjct: 173 GHRLDAAGEMHESSPL-QPSLNMGLAVNPFSPSFATEAVEGMKHISPSQSN-MVHCSASN 230

Query: 288 L-----RPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQ 342
           +     RP +  P V            +    Q R GRP V+ RGR  LLPRYWP++TD+
Sbjct: 231 ILQKPSRPAISTPPV------------ASKSAQARIGRPPVEGRGRGHLLPRYWPKYTDK 278

Query: 343 DLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSK 402
           ++QQISG+ N  I PLFEK LSASDAGRIGRLVLPK CAEAYFPPISQ EG+PLK+QD +
Sbjct: 279 EVQQISGNLNLNIVPLFEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIPLKIQDVR 338

Query: 403 GKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSA 462
           G+EW FQFR+WPNNNSRMYVLEGVTPCIQ+M LQAGD VTFSR++P GKL+MG RKA++A
Sbjct: 339 GREWTFQFRYWPNNNSRMYVLEGVTPCIQSMMLQAGDTVTFSRVDPGGKLIMGSRKAANA 398

Query: 463 ----------SASDQDNEANKAGTGIPA-NGHAELA--------DPSSWSKVDKSGYIAT 503
                       S +D  ++      P+ NG + ++         P + +     G I  
Sbjct: 399 GDMQGCGLTNGTSTEDTSSSGVTENPPSINGSSCISLIPKELNGMPENLNSETNGGRIGD 458

Query: 504 EALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIE 563
           +     + +  K++  T+G+K+KRL + +E+ +EL+LTWEEAQ LLRP P+  P++VVIE
Sbjct: 459 DP----TRVKEKKRTRTIGAKNKRLLLHSEESMELRLTWEEAQDLLRPSPSVKPTIVVIE 514

Query: 564 GYEFEEYEDAPILGKPTIFATDNVG 588
             E EEY++ P+ GK TI  T   G
Sbjct: 515 EQEIEEYDEPPVFGKRTIVTTKPSG 539

Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CCK4|VAL2_ARATH B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1

 Score =  341 bits (874), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 167/280 (59%), Positives = 212/280 (75%), Gaps = 5/280 (1%)

Query: 314 TQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGD----SNSVITPLFEKMLSASDAG 369
           +Q+   RP  + RG++QLLPRYWPR TDQ+L Q+SG     SNS I PLFEK+LSASDAG
Sbjct: 237 SQIHVARPPPEGRGKTQLLPRYWPRITDQELLQLSGQYPHLSNSKIIPLFEKVLSASDAG 296

Query: 370 RIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPC 429
           RIGRLVLPK CAEAYFPPIS PEGLPLK+QD KGKEW+FQFRFWPNNNSRMYVLEGVTPC
Sbjct: 297 RIGRLVLPKACAEAYFPPISLPEGLPLKIQDIKGKEWVFQFRFWPNNNSRMYVLEGVTPC 356

Query: 430 IQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADP 489
           IQ+MQLQAGD VTFSR EPEGKLVMG+RKA++++A+     +++    + +N        
Sbjct: 357 IQSMQLQAGDTVTFSRTEPEGKLVMGYRKATNSTATQMFKGSSEPNLNMFSNSLNPGCGD 416

Query: 490 SSWSKVDKSGYIATEALGAKSSISRKRKNT-TLGSKSKRLKIENEDVIELKLTWEEAQGL 548
            +WSK++KS  +A + L  +SS++  RK    +G+KSKRL I++ DV+ELK+TWEEAQ L
Sbjct: 417 INWSKLEKSEDMAKDNLFLQSSLTSARKRVRNIGTKSKRLLIDSVDVLELKITWEEAQEL 476

Query: 549 LRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVG 588
           LRPP +  PS+  +E  +FEEY++ P+ GK T+F +   G
Sbjct: 477 LRPPQSTKPSIFTLENQDFEEYDEPPVFGKRTLFVSRQTG 516

Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z3U3|Y7797_ORYSJ B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1

 Score =  299 bits (766), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 170/311 (54%), Positives = 202/311 (64%), Gaps = 42/311 (13%)

Query: 315 QVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRL 374
            +R  RP  + RGR+QLLPRYWPR TDQ+LQQISGDSNS I PLFEK+LSASDAGRIGRL
Sbjct: 319 HLRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKVLSASDAGRIGRL 378

Query: 375 VLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQ 434
           VLPK CAEAYFPPISQPEG PL +QD+KGKEW FQFRFWPNNNSRMYVLEGVTPCIQ++Q
Sbjct: 379 VLPKACAEAYFPPISQPEGRPLTIQDAKGKEWHFQFRFWPNNNSRMYVLEGVTPCIQSLQ 438

Query: 435 LQAGDIVTFSRLEPEGKLVMGFRKASSAS---------------------ASDQDNEANK 473
           LQAGD VTFSR+EP GKLVMGFRKA++                       +S  +N A  
Sbjct: 439 LQAGDTVTFSRIEPGGKLVMGFRKATNTVSLPDSQISAIANGSILGDTLFSSTNENLAIV 498

Query: 474 AG---------------TGIPANGHAELADPS-SWSKVDKSGYIATEALGAKSSISRKRK 517
           +G               T    + H   AD   SW K DK G    E      S+   ++
Sbjct: 499 SGYSGFLQSIKGAADLHTSSIYDHHVNSADGDVSWLKTDKFGSRPDEG-----SLQFLKR 553

Query: 518 NTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILG 577
              +GSKS+RL ++ E+  ELKL W+E Q LLRP P   P+VV+IE YE EEY++ P+  
Sbjct: 554 GRNIGSKSRRLSMDAEEAWELKLYWDEVQELLRPAPTAKPTVVMIEDYEIEEYDEPPVFA 613

Query: 578 KPTIFATDNVG 588
           K +IF   + G
Sbjct: 614 KRSIFTIRSTG 624

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XKC4|Y4765_ORYSJ Putative B3 domain-containing protein Os04g0676650 OS=Oryza sativa subsp. japonica GN=Os04g0676650 PE=3 SV=2

 Score = 95.9 bits (237), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 1/108 (0%)

Query: 358 LFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKE-WIFQFRFWPNN 416
           +  K L+ SD G IGR+V+PK+ AEA+ P + Q EG+ LK+ D K +  W F++RFWPNN
Sbjct: 301 ILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVTLKMDDFKFETTWNFKYRFWPNN 360

Query: 417 NSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASA 464
            SRMYVLE     +++  LQ GDI    +    GK V+   KA   +A
Sbjct: 361 KSRMYVLESTGGFVKHHGLQTGDIFIIYKSSESGKFVVRGEKAIKPNA 408

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XKC5|IDEFH_ORYSJ B3 domain-containing protein Os04g0676600 OS=Oryza sativa subsp. japonica GN=Os04g0676600 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 358 LFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSK-GKEWIFQFRFWPNN 416
           +  K L+ SD G IGR+V+PK+ AEA+ P + Q EG+ LK+ D K    W F++RFWPNN
Sbjct: 296 ILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDDFKLETTWNFKYRFWPNN 355

Query: 417 NSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKA 459
            SRMYVLE     ++   LQ GDI    +     KLV+   KA
Sbjct: 356 KSRMYVLESTGGFVKQHVLQTGDIFIIYKSSESEKLVVRGEKA 398

Probable transcription regulator that binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LW31|FUS3_ARATH B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana GN=FUS3 PE=2 SV=2

 Score = 94.0 bits (232), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 63/110 (57%), Gaps = 1/110 (0%)

Query: 358 LFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKE-WIFQFRFWPNN 416
           LF+K L  SD   + R++LPKK AEA+ P +   EG+P++++D  G   W F++R+WPNN
Sbjct: 91  LFQKELKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWTFKYRYWPNN 150

Query: 417 NSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASD 466
           NSRMYVLE     +    LQ GD +   +       V+  RKAS     D
Sbjct: 151 NSRMYVLENTGDFVNAHGLQLGDFIMVYQDLYSNNYVIQARKASEEEEVD 200

Transcription regulator involved in gene regulation during late embryogenesis. Its expression to the epidermis is sufficient to control foliar organ identity by regulating positively the synthesis abscisic acid (ABA) and negatively gibberellin production. Negatively regulates TTG1 in the embryo. Positively regulates the abundance of the ABI3 protein in the seed.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z1Z3|IDEF1_ORYSJ B3 domain-containing protein IDEF1 OS=Oryza sativa subsp. japonica GN=IDEF1 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 61/103 (59%), Gaps = 1/103 (0%)

Query: 358 LFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSK-GKEWIFQFRFWPNN 416
           +  K L+ SD G +GR+VLPKK AEA  PP+ Q + L L + D      W F++R+WPNN
Sbjct: 252 ILRKELTKSDVGNVGRIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVTWKFKYRYWPNN 311

Query: 417 NSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKA 459
            SRMY+L+     ++   LQAGD++   +    GK ++   KA
Sbjct: 312 KSRMYILDSAGEFLKTHGLQAGDVIIIYKNLAPGKFIIRGEKA 354

Transcription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A4LBC0|LFL1_ORYSJ B3 domain-containing protein LFL1 OS=Oryza sativa subsp. japonica GN=LFL1 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 2/110 (1%)

Query: 358 LFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLP-LKVQDSKGKE-WIFQFRFWPN 415
           + +K L  SD  ++GR+VLPKK AEAY P ++  +G   L + D +  + W F++R+WPN
Sbjct: 180 ILQKELRYSDVSQLGRIVLPKKEAEAYLPILTSKDGKKSLCMHDLQNAQLWTFKYRYWPN 239

Query: 416 NNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASAS 465
           N SRMYVLE     ++   LQ GD +   + +   + V+G +KA    A+
Sbjct: 240 NKSRMYVLENTGDYVRTHDLQLGDSIVIYKDDENNRFVIGAKKAGDQQAA 289

Transcription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	588
449433878	896	PREDICTED: B3 domain-containing protein	0.884	0.580	0.734	0.0
449479362	899	PREDICTED: LOW QUALITY PROTEIN: B3 domai	0.889	0.581	0.728	0.0
224076806	918	predicted protein [Populus trichocarpa]	0.867	0.555	0.709	0.0
302144200	601	unnamed protein product [Vitis vinifera]	0.860	0.841	0.743	0.0
255560846	854	transcription factor, putative [Ricinus	0.833	0.573	0.709	0.0
359495507	564	PREDICTED: B3 domain-containing protein	0.814	0.849	0.724	0.0
357446313	888	B3 domain-containing transcription repre	0.879	0.582	0.686	0.0
356555034	854	PREDICTED: B3 domain-containing protein	0.841	0.579	0.650	0.0
356549413	855	PREDICTED: B3 domain-containing protein	0.843	0.580	0.644	0.0
356549411	889	PREDICTED: B3 domain-containing protein	0.886	0.586	0.642	0.0

>gi|449433878|ref|XP_004134723.1| PREDICTED: B3 domain-containing protein Os07g0563300-like [Cucumis sativus]

 Score =  800 bits (2065), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/527 (73%), Positives = 445/527 (84%), Gaps = 7/527 (1%)

Query: 63  SIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLV 122
           S YEEGRFC+TFH+NASGWRCCESCGKRVHCGCI S HAFTLLD GGIECMTCARKNV++
Sbjct: 53  SAYEEGRFCETFHLNASGWRCCESCGKRVHCGCIVSAHAFTLLDPGGIECMTCARKNVIL 112

Query: 123 APTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLP 182
              P+WPPSL + +  P+R+K+LSVKNW+QLAGSGPVPWRQAPS+FNSS+P  EL  R P
Sbjct: 113 PLNPAWPPSLLFHSALPDRLKELSVKNWSQLAGSGPVPWRQAPSMFNSSLPSGELHHRAP 172

Query: 183 YEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLK-SGSRDIPENANAGSNCDM 241
           YEVD+SA ++++N SERL V SLEKRK EDFSER +NG LK  GS  +      G  CD 
Sbjct: 173 YEVDISAALNKLNTSERLPV-SLEKRKNEDFSERFLNGSLKPCGSVLV---VMRGIKCDD 228

Query: 242 QPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFH 301
           +PSSC N P+QSS +K+DSST  +GL + YA P+E +++  +SG+HLRP     L KQ H
Sbjct: 229 KPSSCSNMPKQSSFVKEDSSTMQYGLNIPYAPPNEPSARGRISGTHLRPTPLSSLPKQIH 288

Query: 302 GNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEK 361
            NL NGADS  ETQ+RNGRPR ++RG++ LLPRYWPRFTDQ+LQQIS DSNSVITPLFEK
Sbjct: 289 TNLQNGADSSNETQLRNGRPRGESRGKNYLLPRYWPRFTDQELQQISVDSNSVITPLFEK 348

Query: 362 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 421
           MLSASDAGRIGRLVLPKKCAEAYFP ISQPEGLPLKVQD+KGKEWIFQFRFWPNNNSRMY
Sbjct: 349 MLSASDAGRIGRLVLPKKCAEAYFPSISQPEGLPLKVQDAKGKEWIFQFRFWPNNNSRMY 408

Query: 422 VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPAN 481
           VLEGVTPCIQ+MQLQAGD VTFSRLEPEGKLVMGFRKAS  + +DQ+NE NK   G P +
Sbjct: 409 VLEGVTPCIQSMQLQAGDTVTFSRLEPEGKLVMGFRKAS--ATADQENETNKTKNGAPVH 466

Query: 482 GHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLT 541
           G AELADP+SW+KVDKSGYIA E LGAK SISRKRKN+TLGSKSKRL+I+NED+IELK+T
Sbjct: 467 GDAELADPNSWTKVDKSGYIAKEVLGAKPSISRKRKNSTLGSKSKRLRIDNEDMIELKIT 526

Query: 542 WEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVG 588
           WEEAQGLLRPPPN VP+++VIEG+EFE YE+AP+LGKP+I   DN G
Sbjct: 527 WEEAQGLLRPPPNQVPNILVIEGFEFEAYEEAPVLGKPSIIPPDNTG 573

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479362|ref|XP_004155579.1| PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os07g0563300-like [Cucumis sativus]

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/527 (72%), Positives = 445/527 (84%), Gaps = 4/527 (0%)

Query: 63  SIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLV 122
           S YEEGRFC+TFH+NASGWRCCESCGKRVHCGCI S HAFTLLD GGIECMTCARKNV++
Sbjct: 53  SAYEEGRFCETFHLNASGWRCCESCGKRVHCGCIVSAHAFTLLDPGGIECMTCARKNVIL 112

Query: 123 APTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLP 182
              P+WPPSL + +  P+R+K+LSVKNW+QLAGSGPVPWRQAPS+FNSS+P  EL  R P
Sbjct: 113 PLNPAWPPSLLFHSALPDRLKELSVKNWSQLAGSGPVPWRQAPSMFNSSLPSGELHHRAP 172

Query: 183 YEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGS-NCDM 241
           YEVD+SA ++++N SER +     K+K EDFSER +NG LK   +D+ EN  AG   CD 
Sbjct: 173 YEVDISAALNKLNTSERXAC-IFRKKKNEDFSERFLNGSLKPCGQDLCENGTAGGIKCDD 231

Query: 242 QPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFH 301
           +PSSC N P+QSS +K+DSST  +GL + YA P+E +++  +SG+HLRP     L KQ H
Sbjct: 232 KPSSCSNMPKQSSFVKEDSSTMQYGLNIPYAPPNEPSARGRISGTHLRPTPLSSLPKQIH 291

Query: 302 GNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEK 361
            NL NGADS  ETQ+RNGRPR ++RG++ LLPRYWPRFTDQ+LQQIS DSNSVITPLFEK
Sbjct: 292 TNLQNGADSSNETQLRNGRPRGESRGKNYLLPRYWPRFTDQELQQISVDSNSVITPLFEK 351

Query: 362 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 421
           MLSASDAGRIGRLVLPKKCAEAYFP ISQPEGLPLKVQD+KGKEWIFQFRFWPNNNSRMY
Sbjct: 352 MLSASDAGRIGRLVLPKKCAEAYFPSISQPEGLPLKVQDAKGKEWIFQFRFWPNNNSRMY 411

Query: 422 VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPAN 481
           VLEGVTPCIQ+MQLQAGD VTFSRLEPEGKLVMGFRKAS  + +DQ+NE NK   G P +
Sbjct: 412 VLEGVTPCIQSMQLQAGDTVTFSRLEPEGKLVMGFRKAS--ATADQENETNKTKNGAPVH 469

Query: 482 GHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLT 541
           G AELADP+SW+KVDKSGYIA E LGAK SISRKRKN+TLGSKSKRL+I+NED+IELK+T
Sbjct: 470 GDAELADPNSWTKVDKSGYIAKEVLGAKPSISRKRKNSTLGSKSKRLRIDNEDMIELKIT 529

Query: 542 WEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVG 588
           WEEAQGLLRPPPN VP+++VIEG+EFEEYE+AP+LGKP+I   DN G
Sbjct: 530 WEEAQGLLRPPPNQVPNILVIEGFEFEEYEEAPVLGKPSIIPPDNTG 576

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076806|ref|XP_002305001.1| predicted protein [Populus trichocarpa] gi|222847965|gb|EEE85512.1| predicted protein [Populus trichocarpa]

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/541 (70%), Positives = 430/541 (79%), Gaps = 31/541 (5%)

Query: 63  SIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVL- 121
           S YEEG FC+TFH+ ASGWRCCESCGK VHCGCI S+  FTLLDAGGI CM C RK+ + 
Sbjct: 65  SAYEEGSFCETFHLRASGWRCCESCGKGVHCGCIVSIQTFTLLDAGGIACMACERKSFVL 124

Query: 122 --------------VAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSL 167
                         V   P+W P LFY  PFPER+KDLSVK+W+QLAGSGPVPWRQAPSL
Sbjct: 125 ESNPQILLTATSADVTSNPAWSP-LFYHAPFPERLKDLSVKSWSQLAGSGPVPWRQAPSL 183

Query: 168 FNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSR 227
           FN S  Q EL+ R+PYEVD      R+N  ER S PSLEKRK+EDFSE+ +NG L+   +
Sbjct: 184 FNPSAAQSELQTRMPYEVD------RLNTGERFSAPSLEKRKVEDFSEKFINGNLRIRLQ 237

Query: 228 DIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSH 287
           DI EN NAG   + QP       Q SS+L +D+S   FG+ + Y S SE+NSQI  S + 
Sbjct: 238 DIVENGNAGIIGEEQP-------QPSSSLMEDASGQQFGITIPYKSISESNSQIEGSVNA 290

Query: 288 LRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQI 347
           L+P   PP  K FHG+L NG DS  +  +RNG+PR DARGRSQLLPRYWPRFTD +LQQI
Sbjct: 291 LQPAPPPPFTKHFHGSLHNGVDSSVDGHIRNGKPRTDARGRSQLLPRYWPRFTDGELQQI 350

Query: 348 SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWI 407
           SG+SNSVI PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPL+VQDSKGKEWI
Sbjct: 351 SGNSNSVIKPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLRVQDSKGKEWI 410

Query: 408 FQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQ 467
           FQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKA+SA  SDQ
Sbjct: 411 FQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKATSAPPSDQ 470

Query: 468 DNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKR 527
           DNE ++ G G+   G AEL DPS WSKVDKSGYIA E L  KSSI RKRK++TLGSKSKR
Sbjct: 471 DNETSQTGNGVSTKGDAEL-DPSPWSKVDKSGYIAKEVLEGKSSI-RKRKSSTLGSKSKR 528

Query: 528 LKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNV 587
           L+IENED+IELKLTWEEAQGLLRPPP++VPS+V IEG+EFEEYEDAP+LGKPTIFATDNV
Sbjct: 529 LRIENEDMIELKLTWEEAQGLLRPPPDHVPSIVAIEGFEFEEYEDAPVLGKPTIFATDNV 588

Query: 588 G 588
           G
Sbjct: 589 G 589

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144200|emb|CBI23327.3| unnamed protein product [Vitis vinifera]

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/515 (74%), Positives = 431/515 (83%), Gaps = 9/515 (1%)

Query: 63  SIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLV 122
           S+Y+EGRFC+TFH NASGWR C+SC KRVHCGCI S+H+FTLLD GGIEC+ CARKNV++
Sbjct: 42  SLYDEGRFCETFHSNASGWRGCKSCAKRVHCGCIASIHSFTLLDTGGIECIPCARKNVVL 101

Query: 123 APTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLP 182
            P P+WPP  F   P PER+KD  VKNW+Q   S PV WR A +LFN+SIPQ +LRPR+P
Sbjct: 102 TPNPAWPPHFFL--PLPERLKD-PVKNWSQ---SQPV-WR-ASNLFNTSIPQSDLRPRMP 153

Query: 183 YEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQ 242
            E DLS G+DR+  SER S  S+EK+K+ED SER MNGGLK G+ ++ EN N+G+NC+ Q
Sbjct: 154 SEADLSTGVDRLIVSERSSASSMEKKKIEDSSERSMNGGLKLGALEMLENGNSGTNCEEQ 213

Query: 243 PSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHG 302
           P+SC+N PQQSS+L DD S P   LAV YAS SETN Q  VSG+  +P   PPL K+F G
Sbjct: 214 PASCVNIPQQSSSLNDDHSAPLLSLAVPYASSSETNGQTVVSGTLSQPTPSPPLAKKFSG 273

Query: 303 NLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKM 362
           +  NG DS GE QVRNGRPR DARGR+QLLPRYWPR TDQ+LQQISGDSNSVITPLFEKM
Sbjct: 274 HPHNGVDSSGEAQVRNGRPRGDARGRNQLLPRYWPRITDQELQQISGDSNSVITPLFEKM 333

Query: 363 LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYV 422
           LSASDAGRIGRLVLPKKCAEAYFP ISQPEGLPLKVQD+KG EWIFQFRFWPNNNSRMYV
Sbjct: 334 LSASDAGRIGRLVLPKKCAEAYFPAISQPEGLPLKVQDAKGHEWIFQFRFWPNNNSRMYV 393

Query: 423 LEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANG 482
           LEGVTPCIQ+MQLQAGD VTFSRLEPEGKLVMGFRKAS+A +SDQ NE  K G G   +G
Sbjct: 394 LEGVTPCIQSMQLQAGDTVTFSRLEPEGKLVMGFRKASTAPSSDQGNETIKTGNGGSTHG 453

Query: 483 HAELADP-SSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLT 541
            A+LADP S+WSKVDKSGYIA EALGAKSSI RKRKN+TLGSKSKRL+IENED+IELKLT
Sbjct: 454 DADLADPASAWSKVDKSGYIAKEALGAKSSIPRKRKNSTLGSKSKRLRIENEDLIELKLT 513

Query: 542 WEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPIL 576
           WEEAQGLLRPP N+VP+VVVIEGYEFEEYE  PIL
Sbjct: 514 WEEAQGLLRPPLNHVPNVVVIEGYEFEEYEQMPIL 548

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560846|ref|XP_002521436.1| transcription factor, putative [Ricinus communis] gi|223539335|gb|EEF40926.1| transcription factor, putative [Ricinus communis]

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/527 (70%), Positives = 419/527 (79%), Gaps = 37/527 (7%)

Query: 63  SIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLV 122
           S++EEGRFCDTFH+NA+GWRCCESCGKRVHCGCI S +AF LLDAGGIECM CARKN+++
Sbjct: 47  SMFEEGRFCDTFHLNATGWRCCESCGKRVHCGCIVSNNAFMLLDAGGIECMACARKNIVL 106

Query: 123 APTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLP 182
           +    WPP LFY TP  ER KDLSVK   QLAGSGPVPWRQAPSLFNS I   EL+PR  
Sbjct: 107 SSNTPWPPPLFYNTPLSERFKDLSVKGLGQLAGSGPVPWRQAPSLFNSPISHSELQPRAL 166

Query: 183 YEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQ 242
           YE      IDR+   ER S P+LEK +++DFSERL+NG LK            G+  + +
Sbjct: 167 YE------IDRLATGERSSAPALEKGRMDDFSERLINGSLK-----------LGAGIEEK 209

Query: 243 PSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLR-PVVQPPLVKQFH 301
           P SCL  P Q S+L++D ST    + + +AS +E N    VSG+ LR P   P L KQFH
Sbjct: 210 PGSCLGIPHQPSSLREDPSTAQR-MVIPFASLNEPNIS-AVSGTPLRQPAPPPSLPKQFH 267

Query: 302 GNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEK 361
           GNL NG DS  +T +RNGRPRVDAR RSQLLPRYWPRFTD++LQQISG+SNSVITPLFEK
Sbjct: 268 GNLHNGVDSSIDTHIRNGRPRVDARARSQLLPRYWPRFTDEELQQISGNSNSVITPLFEK 327

Query: 362 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 421
           MLSASDAGRIGRLVLPKKCAEAYFPPIS PEGLPLKVQD+KG+EWIFQFRFWPNNNSRMY
Sbjct: 328 MLSASDAGRIGRLVLPKKCAEAYFPPISHPEGLPLKVQDAKGREWIFQFRFWPNNNSRMY 387

Query: 422 VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPAN 481
           VLEGVTPCIQNM+LQAGDIVTFSRLEPEGKLVMGFRK S+  +SDQ              
Sbjct: 388 VLEGVTPCIQNMRLQAGDIVTFSRLEPEGKLVMGFRKTSNVPSSDQ-------------- 433

Query: 482 GHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLT 541
             AELAD S WSKVDKSGYIA E L AKSSI RKRK++TLGSKSKRL+IENED+IELKLT
Sbjct: 434 --AELADSSPWSKVDKSGYIAKEVLEAKSSI-RKRKSSTLGSKSKRLRIENEDMIELKLT 490

Query: 542 WEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVG 588
           WEEAQGLLRPPP+++PSV+VIEGYEFEEYEDAPILGKPTIFATDN G
Sbjct: 491 WEEAQGLLRPPPDHIPSVLVIEGYEFEEYEDAPILGKPTIFATDNSG 537

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495507|ref|XP_002270901.2| PREDICTED: B3 domain-containing protein Os07g0563300-like, partial [Vitis vinifera]

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/515 (72%), Positives = 416/515 (80%), Gaps = 36/515 (6%)

Query: 63  SIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLV 122
           S+Y+EGRFC+TFH NASGWR C+SC KRVHCGCI S+H+FTLLD GGIEC+ CARKNV++
Sbjct: 42  SLYDEGRFCETFHSNASGWRGCKSCAKRVHCGCIASIHSFTLLDTGGIECIPCARKNVVL 101

Query: 123 APTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLP 182
            P P+WPP  F   P PER+KD  VKNW+Q   S PV WR A +LFN+SIPQ +LRPR+P
Sbjct: 102 TPNPAWPPHFFL--PLPERLKD-PVKNWSQ---SQPV-WR-ASNLFNTSIPQSDLRPRMP 153

Query: 183 YEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQ 242
            E DLS G+DR+  SER S  S+EK+K+ED SER MNGGLK            G+NC+ Q
Sbjct: 154 SEADLSTGVDRLIVSERSSASSMEKKKIEDSSERSMNGGLK-----------LGTNCEEQ 202

Query: 243 PSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHG 302
           P+SC+N PQQSS+L DD S P   LAV YAS SETN Q  VSG+  +P   PPL K+F G
Sbjct: 203 PASCVNIPQQSSSLNDDHSAPLLSLAVPYASSSETNGQTVVSGTLSQPTPSPPLAKKFSG 262

Query: 303 NLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKM 362
           +  NG DS GE QVRNGRPR DARGR+QLLPRYWPR TDQ+LQQISGDSNSVITPLFEKM
Sbjct: 263 HPHNGVDSSGEAQVRNGRPRGDARGRNQLLPRYWPRITDQELQQISGDSNSVITPLFEKM 322

Query: 363 LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYV 422
           LSASDAGRIGRLVLPKKCAEAYFP ISQPEGLPLKVQD+KG EWIFQFRFWPNNNSRMYV
Sbjct: 323 LSASDAGRIGRLVLPKKCAEAYFPAISQPEGLPLKVQDAKGHEWIFQFRFWPNNNSRMYV 382

Query: 423 LEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANG 482
           LEGVTPCIQ+MQLQAGD VTFSRLEPEGKLVMGFRKAS+A +SDQ               
Sbjct: 383 LEGVTPCIQSMQLQAGDTVTFSRLEPEGKLVMGFRKASTAPSSDQ--------------- 427

Query: 483 HAELADP-SSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLT 541
            A+LADP S+WSKVDKSGYIA EALGAKSSI RKRKN+TLGSKSKRL+IENED+IELKLT
Sbjct: 428 -ADLADPASAWSKVDKSGYIAKEALGAKSSIPRKRKNSTLGSKSKRLRIENEDLIELKLT 486

Query: 542 WEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPIL 576
           WEEAQGLLRPP N+VP+VVVIEGYEFEEYE  PIL
Sbjct: 487 WEEAQGLLRPPLNHVPNVVVIEGYEFEEYEQMPIL 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446313|ref|XP_003593434.1| B3 domain-containing transcription repressor VAL2 [Medicago truncatula] gi|355482482|gb|AES63685.1| B3 domain-containing transcription repressor VAL2 [Medicago truncatula]

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/529 (68%), Positives = 409/529 (77%), Gaps = 12/529 (2%)

Query: 63  SIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLV 122
           S +EEGRFCD FH N SGWR CE+C KR+HCGCI S   F LLD GGIEC TCARKNV++
Sbjct: 53  SAFEEGRFCDIFHANTSGWRNCETCRKRIHCGCIVSSSTFVLLDPGGIECFTCARKNVIL 112

Query: 123 APTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNS--SIPQPELRPR 180
                WP SL       ER +D+S K+W+QLAGSGPVPW+QAPSLFNS  S  QP   P 
Sbjct: 113 PSNLPWPQSLSLTNRLSERYRDMSGKSWSQLAGSGPVPWKQAPSLFNSASSSDQP---PA 169

Query: 181 LPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCD 240
           +   VDLS   D+I  +ERL   SLEK+  ED +    N  +K GS ++    N   N D
Sbjct: 170 VHSLVDLSNNFDKIYGNERLPPSSLEKKN-EDLAGISANWNVKLGSSEMVL-MNGMRNED 227

Query: 241 MQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPP-LVKQ 299
            +   CLN  QQ  TLK+DSS+  FGL+V Y+SP+E N QIGV+G H  P   PP L KQ
Sbjct: 228 -KSGPCLNMCQQPHTLKEDSSSQPFGLSVPYSSPNERNGQIGVTGIH--PQQTPPHLGKQ 284

Query: 300 FHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLF 359
           F G +    DS GE QVRNGRPR DARGRSQLLPRYWPR T+ +LQQIS DSNSVITPLF
Sbjct: 285 FGGTMHLPLDSSGEAQVRNGRPRADARGRSQLLPRYWPRCTELELQQISVDSNSVITPLF 344

Query: 360 EKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSR 419
           +K LSASDAGRIGRLVLPKKCAE YFPPISQPEGLPLK+ D+KGKEWIFQFRFWPNNNSR
Sbjct: 345 QKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSR 404

Query: 420 MYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIP 479
           MYVLEGVTPCIQ+MQLQAGD VTFSRLEPEG+LVMGFRKA++   SDQDNEANK G G  
Sbjct: 405 MYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKATNPLPSDQDNEANKTGNGFS 464

Query: 480 ANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELK 539
           A    ELADPSSWS VDKSGYIA EALG+KS ISRKRKN  LGSKSKRLKIENED+IELK
Sbjct: 465 A-PEVELADPSSWSNVDKSGYIAKEALGSKSLISRKRKNNILGSKSKRLKIENEDIIELK 523

Query: 540 LTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVG 588
           +TW+EAQGLLRPPPN+VPS+VVIEG+EFEEYEDAP+LGKP+IF +DN+G
Sbjct: 524 ITWQEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPSIFTSDNMG 572

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555034|ref|XP_003545844.1| PREDICTED: B3 domain-containing protein Os07g0563300-like [Glycine max]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/526 (65%), Positives = 403/526 (76%), Gaps = 31/526 (5%)

Query: 63  SIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLV 122
           S +EEGRFC+ FH NASGWR CE+C KR+HCGCI S HAF LLD GGIEC  CARK++++
Sbjct: 45  SAFEEGRFCEIFHSNASGWRSCETCRKRIHCGCIVSSHAFMLLDPGGIECYACARKSIIL 104

Query: 123 APTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLP 182
                WP S   Q    +R++DLS K W+QLAGSGPVPW+QAPSLFNS+    ++ P +P
Sbjct: 105 PSNLPWPQSFPLQNRLSDRLRDLSGKGWSQLAGSGPVPWKQAPSLFNSA-SSSDMIPEVP 163

Query: 183 YEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQ 242
             V+LS   D++  +ERL V +LEK+  ED S   +N  +K G R+           + +
Sbjct: 164 SLVELSNSFDKMYCNERLPVSALEKKN-EDLSGMSVNWNIKLGMRN-----------EDK 211

Query: 243 PSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHG 302
            SSCLN  QQ S+LK++SS   FGL V  +  +E N ++GV+GSH  P   PP  KQF+G
Sbjct: 212 SSSCLNMCQQPSSLKEESSPQPFGLPVPNSCQNERNGKLGVTGSH--PQQTPPPGKQFNG 269

Query: 303 NLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKM 362
            +    DS GE QVRNGRPR DARGR+QLLPRYWPR TD +LQQIS DSNSVITPLF+K 
Sbjct: 270 TMHLAPDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKT 329

Query: 363 LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYV 422
           LSASDAGRIGRLVLPKKCAE YFPPISQPEGLPLK+ D+KGKEWIFQFRFWPNNNSRMYV
Sbjct: 330 LSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYV 389

Query: 423 LEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANG 482
           LEGVTPCIQ+MQLQAGD VTFSRLEPEG+LVMGFRKASSA  SDQ               
Sbjct: 390 LEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAVPSDQ--------------- 434

Query: 483 HAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTW 542
             ELADP+SWSKVDKSGYIA EALG+KS ISRKRK+  LGSKSKRL+IENED+IELK+TW
Sbjct: 435 -VELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSNILGSKSKRLRIENEDLIELKITW 493

Query: 543 EEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVG 588
           +EAQGLLRPPP+++PS+VVIEG+EFEEYE+AP+LGKPTIF +D+VG
Sbjct: 494 QEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDSVG 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549413|ref|XP_003543088.1| PREDICTED: B3 domain-containing protein Os07g0563300-like isoform 2 [Glycine max]

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/526 (64%), Positives = 401/526 (76%), Gaps = 30/526 (5%)

Query: 63  SIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLV 122
           S +EEGRFC+ FH NASGWR CE+C KR+HCGCI S HAF LLD GGIEC  CARK++++
Sbjct: 45  SAFEEGRFCEIFHSNASGWRSCETCLKRIHCGCIVSSHAFMLLDPGGIECYACARKSIIL 104

Query: 123 APTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLP 182
                WP S   Q    +R++DLS K W+QLAGSGPVPW+QAPSLFNS+    +L P +P
Sbjct: 105 PSNLPWPQSFSLQNRLSDRLRDLSAKGWSQLAGSGPVPWKQAPSLFNSA-SSSDLIPEVP 163

Query: 183 YEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQ 242
             V+LS   D++  +ERL   +LEK+  ED S   +N  +K G R+           + +
Sbjct: 164 SLVELSNSFDKMYCNERLPASALEKKN-EDLSGIPVNWNVKLGMRN-----------EDK 211

Query: 243 PSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHG 302
            SSCLN  QQ S+LK++SS   FGLAV  +  +E N Q+GV+GSH +    PP  KQF+G
Sbjct: 212 SSSCLNMCQQPSSLKEESSPQPFGLAVPNSCQNERNGQLGVTGSHPQQTPPPP-GKQFNG 270

Query: 303 NLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKM 362
            +    DS GE Q+RNGRPR D+RGR+QLLPRYWPR TD +LQQIS DSNSVITPLF+K 
Sbjct: 271 TMHLAPDSSGEAQIRNGRPRADSRGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKT 330

Query: 363 LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYV 422
           LSASDAGRIGRLVLPKKCAE YFPPISQPEGLPLK+ D+KGKEWIFQFRFWPNNNSRMYV
Sbjct: 331 LSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYV 390

Query: 423 LEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANG 482
           LEGVTPCIQ+MQLQAGD VTFSRLEPEG+LVMGFRKASS   SDQ               
Sbjct: 391 LEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSVMPSDQ--------------- 435

Query: 483 HAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTW 542
             ELADP+SWSKVDKSGYIA EALG+KS ISRKRK+  L SKSKRL+IENED+IELK+TW
Sbjct: 436 -VELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSNILSSKSKRLRIENEDLIELKITW 494

Query: 543 EEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVG 588
           +EAQGLLRPPP+++PS+VVIEG+EFEEYE+AP+LGKPTIF +D+VG
Sbjct: 495 QEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDSVG 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549411|ref|XP_003543087.1| PREDICTED: B3 domain-containing protein Os07g0563300-like isoform 1 [Glycine max]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/535 (64%), Positives = 407/535 (76%), Gaps = 14/535 (2%)

Query: 63  SIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLV 122
           S +EEGRFC+ FH NASGWR CE+C KR+HCGCI S HAF LLD GGIEC  CARK++++
Sbjct: 45  SAFEEGRFCEIFHSNASGWRSCETCLKRIHCGCIVSSHAFMLLDPGGIECYACARKSIIL 104

Query: 123 APTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLP 182
                WP S   Q    +R++DLS K W+QLAGSGPVPW+QAPSLFNS+    +L P +P
Sbjct: 105 PSNLPWPQSFSLQNRLSDRLRDLSAKGWSQLAGSGPVPWKQAPSLFNSA-SSSDLIPEVP 163

Query: 183 YEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQ 242
             V+LS   D++  +ERL   +LEK+  ED S   +N  +K GSR++    N   N D +
Sbjct: 164 SLVELSNSFDKMYCNERLPASALEKKN-EDLSGIPVNWNVKLGSREM-MLMNGMRNED-K 220

Query: 243 PSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHG 302
            SSCLN  QQ S+LK++SS   FGLAV  +  +E N Q+GV+GSH +    PP  KQF+G
Sbjct: 221 SSSCLNMCQQPSSLKEESSPQPFGLAVPNSCQNERNGQLGVTGSHPQQTPPPP-GKQFNG 279

Query: 303 NLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGD---------SNS 353
            +    DS GE Q+RNGRPR D+RGR+QLLPRYWPR TD +LQQIS +         SNS
Sbjct: 280 TMHLAPDSSGEAQIRNGRPRADSRGRNQLLPRYWPRCTDLELQQISIEYPSNQMIVVSNS 339

Query: 354 VITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFW 413
           VITPLF+K LSASDAGRIGRLVLPKKCAE YFPPISQPEGLPLK+ D+KGKEWIFQFRFW
Sbjct: 340 VITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFW 399

Query: 414 PNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANK 473
           PNNNSRMYVLEGVTPCIQ+MQLQAGD VTFSRLEPEG+LVMGFRKASS   SDQ  E   
Sbjct: 400 PNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSVMPSDQFGENLN 459

Query: 474 AGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENE 533
             T        ELADP+SWSKVDKSGYIA EALG+KS ISRKRK+  L SKSKRL+IENE
Sbjct: 460 LYTESLHMLCVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSNILSSKSKRLRIENE 519

Query: 534 DVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVG 588
           D+IELK+TW+EAQGLLRPPP+++PS+VVIEG+EFEEYE+AP+LGKPTIF +D+VG
Sbjct: 520 DLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDSVG 574

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	588
TAIR|locus:2116592	780	HSL1 "HSI2-like 1" [Arabidopsi	0.523	0.394	0.544	1.4e-101
TAIR|locus:2064417	790	HSI2 "high-level expression of	0.685	0.510	0.428	4.8e-93
TAIR|locus:2088439	313	FUS3 "FUSCA 3" [Arabidopsis th	0.188	0.354	0.412	3.5e-17
TAIR|locus:2039165	244	ABS2 "ABNORMAL SHOOT 2" [Arabi	0.209	0.504	0.382	1.6e-15
UNIPROTKB|Q6Z1Z3	362	IDEF1 "B3 domain-containing pr	0.321	0.522	0.326	1.9e-15
UNIPROTKB|Q7XKC5	433	LOC_Os04g58000 "B3 domain-cont	0.173	0.235	0.456	2.4e-15
UNIPROTKB|A4LBC0	402	LFL1 "B3 domain-containing pro	0.367	0.537	0.293	1.5e-14
TAIR|locus:2093166	720	ABI3 "AT3G24650" [Arabidopsis	0.263	0.215	0.331	7.2e-14
TAIR|locus:2032170	363	LEC2 "LEAFY COTYLEDON 2" [Arab	0.306	0.495	0.308	1.4e-13
UNIPROTKB|P37398	727	VP1 "B3 domain-containing prot	0.226	0.182	0.357	6.1e-13

TAIR|locus:2116592 HSL1 "HSI2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 839 (300.4 bits), Expect = 1.4e-101, Sum P(2) = 1.4e-101
 Identities = 176/323 (54%), Positives = 224/323 (69%)

Query:   275 SETNS--QIGVSGSHL--RPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQ 330
             S+TNS  Q+      L  +P    P+     G  P+G  SL  +Q+   RP  + RG++Q
Sbjct:   200 SKTNSIFQLAPRSRQLLPKPANSAPIAA---GMEPSG--SL-VSQIHVARPPPEGRGKTQ 253

Query:   331 LLPRYWPRFTDQDLQQISGD----SNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFP 386
             LLPRYWPR TDQ+L Q+SG     SNS I PLFEK+LSASDAGRIGRLVLPK CAEAYFP
Sbjct:   254 LLPRYWPRITDQELLQLSGQYPHLSNSKIIPLFEKVLSASDAGRIGRLVLPKACAEAYFP 313

Query:   387 PISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL 446
             PIS PEGLPLK+QD KGKEW+FQFRFWPNNNSRMYVLEGVTPCIQ+MQLQAGD VTFSR 
Sbjct:   314 PISLPEGLPLKIQDIKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRT 373

Query:   447 EPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEAL 506
             EPEGKLVMG+RKA++++A+     +++    + +N         +WSK++KS  +A + L
Sbjct:   374 EPEGKLVMGYRKATNSTATQMFKGSSEPNLNMFSNSLNPGCGDINWSKLEKSEDMAKDNL 433

Query:   507 GAKSSISRKRKNT-TLGSKSKRLKIENEDVIELKLTWEEAQGLLRXXXXXXXXXXXIEGY 565
               +SS++  RK    +G+KSKRL I++ DV+ELK+TWEEAQ LLR           +E  
Sbjct:   434 FLQSSLTSARKRVRNIGTKSKRLLIDSVDVLELKITWEEAQELLRPPQSTKPSIFTLENQ 493

Query:   566 EFEEYEDAPILGKPTIFATDNVG 588
             +FEEY++ P+ GK T+F +   G
Sbjct:   494 DFEEYDEPPVFGKRTLFVSRQTG 516

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010030 "positive regulation of seed germination" evidence=IGI

GO:2000034 "regulation of seed maturation" evidence=IGI

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009790 "embryo development" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048316 "seed development" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2064417 HSI2 "high-level expression of sugar-inducible gene 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 762 (273.3 bits), Expect = 4.8e-93, Sum P(2) = 4.8e-93
 Identities = 193/450 (42%), Positives = 260/450 (57%)

Query:   165 PSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPS-LEKRKLEDFSERLMNGGLK 223
             P +F S +P   L  R    V+  +G  R N  +  S P  +   K E+F      G L 
Sbjct:   111 PGVF-SRLPMKTLADR--QHVNGESG-GR-NEGDLFSQPLVMGGDKREEFMPHRGFGKLM 165

Query:   224 SGSRDIPENANAGSNCD----MQPSSCLNKPQQSSTLKDDSSTPHFGL-AVS---YASPS 275
             S     PE+   G   D    M  SS L +P  +  L  +  +P F   AV    + SPS
Sbjct:   166 S-----PESTTTGHRLDAAGEMHESSPL-QPSLNMGLAVNPFSPSFATEAVEGMKHISPS 219

Query:   276 ETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRY 335
             ++N  +  S S++      P +     + P  A      Q R GRP V+ RGR  LLPRY
Sbjct:   220 QSN-MVHCSASNILQKPSRPAI-----STPPVASK--SAQARIGRPPVEGRGRGHLLPRY 271

Query:   336 WPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLP 395
             WP++TD+++QQISG+ N  I PLFEK LSASDAGRIGRLVLPK CAEAYFPPISQ EG+P
Sbjct:   272 WPKYTDKEVQQISGNLNLNIVPLFEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIP 331

Query:   396 LKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMG 455
             LK+QD +G+EW FQFR+WPNNNSRMYVLEGVTPCIQ+M LQAGD VTFSR++P GKL+MG
Sbjct:   332 LKIQDVRGREWTFQFRYWPNNNSRMYVLEGVTPCIQSMMLQAGDTVTFSRVDPGGKLIMG 391

Query:   456 FRKASSAS----------ASDQDNEANKAGTGIPA-NGHAELA-DPSSWSKVDKSGYIAT 503
              RKA++A            S +D  ++      P+ NG + ++  P   + + ++  + +
Sbjct:   392 SRKAANAGDMQGCGLTNGTSTEDTSSSGVTENPPSINGSSCISLIPKELNGMPEN--LNS 449

Query:   504 EALGAK-----SSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRXXXXXXXX 558
             E  G +     + +  K++  T+G+K+KRL + +E+ +EL+LTWEEAQ LLR        
Sbjct:   450 ETNGGRIGDDPTRVKEKKRTRTIGAKNKRLLLHSEESMELRLTWEEAQDLLRPSPSVKPT 509

Query:   559 XXXIEGYEFEEYEDAPILGKPTIFATDNVG 588
                IE  E EEY++ P+ GK TI  T   G
Sbjct:   510 IVVIEEQEIEEYDEPPVFGKRTIVTTKPSG 539

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=TAS

GO:0009744 "response to sucrose stimulus" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IGI

GO:2000034 "regulation of seed maturation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2088439 FUS3 "FUSCA 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
 Identities = 47/114 (41%), Positives = 66/114 (57%)

Query:   358 LFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKE-WIFQFRFWPNN 416
             LF+K L  SD   + R++LPKK AEA+ P +   EG+P++++D  G   W F++R+WPNN
Sbjct:    91 LFQKELKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWTFKYRYWPNN 150

Query:   417 NSRMYVLEGVTPCIQNMQLQAGD-IVTFSRLEPEGKLVMGFRKASSASASDQDN 469
             NSRMYVLE     +    LQ GD I+ +  L     ++   RKAS     D  N
Sbjct:   151 NSRMYVLENTGDFVNAHGLQLGDFIMVYQDLYSNNYVIQA-RKASEEEEVDVIN 203

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010116 "positive regulation of abscisic acid biosynthetic process" evidence=IMP

GO:0010373 "negative regulation of gibberellin biosynthetic process" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

TAIR|locus:2039165 ABS2 "ABNORMAL SHOOT 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 52/136 (38%), Positives = 79/136 (58%)

Query:   342 QDLQQISGDSNSVITP---LFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQP-----EG 393
             Q  QQ     N V+     LFEK L+ SD G++ RLV+PK+ AE YFP  +       +G
Sbjct:    18 QQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKG 77

Query:   394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVL-EGVTPCIQNMQLQAGDIVTFSRLEPEG-K 451
             L L  +D +GK W F++ +W  N+S+ YVL +G +  ++   L AGD+V F R   +G +
Sbjct:    78 LLLCFEDEEGKPWRFRYSYW--NSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGR 135

Query:   452 LVMGFRK-ASSASASD 466
               +G+R+   S+S+SD
Sbjct:   136 FFIGWRRRGDSSSSSD 151

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009062 "fatty acid catabolic process" evidence=RCA

UNIPROTKB|Q6Z1Z3 IDEF1 "B3 domain-containing protein IDEF1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 220 (82.5 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 65/199 (32%), Positives = 95/199 (47%)

Query:   266 GLAVSYASPSETNSQIGVS-GSHLRPVVQPPLVKQFHGN--LPNGADSLGETQVRNGRPR 322
             G A SY   S T+  +  +  +H+ P+  P   K+      LP    S  E + RN    
Sbjct:   161 GPASSYGVESFTSPSMAPNICTHMPPIEGPISAKEDKKPEILPRVVKSSDELETRNSNVE 220

Query:   323 VDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAE 382
               +     L P        +  + ++     VI     K L+ SD G +GR+VLPKK AE
Sbjct:   221 FHSETVGTL-PESKQGHDSRATKLLNSGEYQVI---LRKELTKSDVGNVGRIVLPKKDAE 276

Query:   383 AYFPPISQPEGLPLKVQDSK-GKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGD-I 440
             A  PP+ Q + L L + D      W F++R+WPNN SRMY+L+     ++   LQAGD I
Sbjct:   277 ASLPPLLQRDPLILHMDDMVLPVTWKFKYRYWPNNKSRMYILDSAGEFLKTHGLQAGDVI 336

Query:   441 VTFSRLEPEGKLVMGFRKA 459
             + +  L P GK ++   KA
Sbjct:   337 IIYKNLAP-GKFIIRGEKA 354

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

UNIPROTKB|Q7XKC5 LOC_Os04g58000 "B3 domain-containing protein Os04g0676600" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 222 (83.2 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 47/103 (45%), Positives = 63/103 (61%)

Query:   358 LFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKE-WIFQFRFWPNN 416
             +  K L+ SD G IGR+V+PK+ AEA+ P + Q EG+ LK+ D K +  W F++RFWPNN
Sbjct:   296 ILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDDFKLETTWNFKYRFWPNN 355

Query:   417 NSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKA 459
              SRMYVLE     ++   LQ GDI    +     KLV+   KA
Sbjct:   356 KSRMYVLESTGGFVKQHVLQTGDIFIIYKSSESEKLVVRGEKA 398

GO:0003677 "DNA binding" evidence=IDA

UNIPROTKB|A4LBC0 LFL1 "B3 domain-containing protein LFL1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 214 (80.4 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 66/225 (29%), Positives = 107/225 (47%)

Query:   284 SGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPR-VDARGRSQ-LLPRYWPRFTD 341
             S S  RP     +  +   +  + + S G+    + RPR V  + RS    PR  P  + 
Sbjct:   105 STSAARPTDMAGVTSKRRSSSASTSSSSGDGAAVSDRPRGVTRKRRSGGRCPR--PAASL 162

Query:   342 QDLQ-QISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLP-LKVQ 399
             +    + S    + +  + +K L  SD  ++GR+VLPKK AEAY P ++  +G   L + 
Sbjct:   163 RPAAPRPSSHHTAGLRVILQKELRYSDVSQLGRIVLPKKEAEAYLPILTSKDGKKSLCMH 222

Query:   400 DSKGKE-WIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 458
             D +  + W F++R+WPNN SRMYVLE     ++   LQ GD +   + +   + V+G +K
Sbjct:   223 DLQNAQLWTFKYRYWPNNKSRMYVLENTGDYVRTHDLQLGDSIVIYKDDENNRFVIGAKK 282

Query:   459 ASSASASDQDNEANKAGTGIPANGHAELADPSS--WSKVDKSGYI 501
             A    A+          T  P    A++ D  S    +VD S ++
Sbjct:   283 AGDQQAATVPQVDEHISTLFPIFPIAQVDDYLSPMAPQVDISAFV 327

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2093166 ABI3 "AT3G24650" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
 Identities = 55/166 (33%), Positives = 84/166 (50%)

Query:   313 ETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIG 372
             ETQ+    P +D  G +  +PR   +      Q    + N  +  L +K+L  SD G +G
Sbjct:   534 ETQL----PTMDRAGSASAMPRQ--QVVPDRRQGWKPEKN--LRFLLQKVLKQSDVGNLG 585

Query:   373 RLVLPKKCAEAYFPPISQPEGLPLKVQD-SKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQ 431
             R+VLPKK AE + P +   +G+ L ++D    + W  ++RFWPNN SRMY+LE     ++
Sbjct:   586 RIVLPKKEAETHLPELEARDGISLAMEDIGTSRVWNMRYRFWPNNKSRMYLLENTGDFVK 645

Query:   432 NMQLQAGD-IVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGT 476
                LQ GD IV +S ++    L+ G  K    S    +   + A T
Sbjct:   646 TNGLQEGDFIVIYSDVKCGKYLIRGV-KVRQPSGQKPEAPPSSAAT 690

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=IEP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IDA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2032170 LEC2 "LEAFY COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 58/188 (30%), Positives = 90/188 (47%)

Query:   292 VQPPLVKQFHGNLPNGADSLGETQVRNGRPR--VDARGRSQLLP-RYWPRFTDQ-DLQQI 347
             + P + K    N  N           N  P   VD++ +  +L  +   + +D+ D  Q 
Sbjct:   100 LDPRMTKMARINRKNAMMRSRNNSSPNSSPSELVDSKRQLMMLNLKNNVQISDKKDSYQQ 159

Query:   348 SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKE-W 406
             S   N  +  L EK L  SD G +GR+VLPK+ AEA  P +S  EG+ ++++D    + W
Sbjct:   160 STFDNKKLRVLCEKELKNSDVGSLGRIVLPKRDAEANLPKLSDKEGIVVQMRDVFSMQSW 219

Query:   407 IFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGK-LVMGFRKASSASAS 465
              F+++FW NN SRMYVLE     ++    + GD +T    E E K L       S     
Sbjct:   220 SFKYKFWSNNKSRMYVLENTGEFVKQNGAEIGDFLTI--YEDESKNLYFAMNGNSGKQNE 277

Query:   466 DQDNEANK 473
              ++NE+ +
Sbjct:   278 GRENESRE 285

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010344 "seed oilbody biogenesis" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

GO:0010601 "positive regulation of auxin biosynthetic process" evidence=IMP

UNIPROTKB|P37398 VP1 "B3 domain-containing protein VP1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 212 (79.7 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
 Identities = 50/140 (35%), Positives = 79/140 (56%)

Query:   338 RFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLK 397
             R T  + +Q   D N  +  L +K+L  SD G +GR+VLPK+ AE + P +   +G+ + 
Sbjct:   518 RSTASEKRQAKTDKN--LRFLLQKVLKQSDVGSLGRIVLPKE-AEVHLPELKTRDGVSIP 574

Query:   398 VQD-SKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGD-IVTFSRLEPEGKLVMG 455
             ++D    + W  ++RFWPNN SRMY+LE     +++ +LQ GD IV +S ++    L+ G
Sbjct:   575 MEDIGTSQVWNMRYRFWPNNKSRMYLLENTGDFVRSNELQEGDFIVIYSDIKSGKYLIRG 634

Query:   456 FRKASSASASDQDNEANKAG 475
               K   A A +Q N +   G
Sbjct:   635 V-KVRRA-AQEQGNSSGAVG 652

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009790 "embryo development" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	588
cd10017	98	cd10017, B3_DNA, Plant-specific B3-DNA binding dom	2e-21
pfam02362	97	pfam02362, B3, B3 DNA binding domain	2e-19
smart01019	96	smart01019, B3, B3 DNA binding domain	7e-17
cd10015	109	cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o	3e-08

>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain

 Score = 88.9 bits (221), Expect = 2e-21
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%)

Query: 357 PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNN 416
           PLF K+L+ SD   +GRLVLPKK A+A+ PP    EG+ + ++D  GK+W  + +   N+
Sbjct: 1   PLFFKVLTPSDVSSLGRLVLPKKFAKAHLPP---KEGVEVTLEDPDGKKWTVKLKKRKNS 57

Query: 417 NSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 458
             RM +  G    ++   L+ GD + F       K  +   +
Sbjct: 58  G-RMVLSGGWKEFVRANGLKEGDFLVFELDGRNSKFKVRIFR 98

The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98

>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain

 Score = 83.1 bits (206), Expect = 2e-19
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 7/103 (6%)

Query: 359 FEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNS 418
           F K+L+ SD  + GRLVLPKK AE         +G  + + D  GK W  + R+    + 
Sbjct: 1   FVKVLTPSDVSKDGRLVLPKKFAEENGLN---KKGQEITLLDPDGKSWTVKLRYR--KSG 55

Query: 419 RMYVLE-GVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAS 460
           R Y+L  G    ++   L+AGD + F +L+  GK V+G  + S
Sbjct: 56  RRYLLTSGWKEFVKANGLKAGDSLVF-KLDGGGKFVVGIFRKS 97

This is a family of plant transcription factors with various roles in development, the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by. Length = 97

>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain

 Score = 75.8 bits (187), Expect = 7e-17
 Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 8/102 (7%)

Query: 359 FEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNS 418
           F K L+ SD  + GRLVLPK+ AE+  PP+   E   + + D  GK W  + ++    +S
Sbjct: 1   FFKTLTTSDVSKHGRLVLPKQFAESNGPPLKPKE---ITLLDPDGKSWKVKLKYR--GSS 55

Query: 419 RMYVLEGVTP--CIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 458
            M++L G        N  L+AGD +TF        +V  FRK
Sbjct: 56  GMFLLTGGWKEFVKAN-GLKAGDSLTFELDGNGEFVVSIFRK 96

Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations. Length = 96

>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins

 Score = 51.5 bits (123), Expect = 3e-08
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 358 LFEKMLSASDAGRIG----RLVLPKKCAEAYFPPISQPEGLP----LKVQD-SKGKEWIF 408
           +  K LSA+D G  G     L +PK   E + P I+          L + D S  ++W  
Sbjct: 2   VLIKRLSANDTGATGGHQVGLYIPKGIVEKFPPSINHTREANPSIFLTMHDISDCRDWEA 61

Query: 409 QFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSR 445
           +  F+ +N +   +  G    ++   L  GD+   + 
Sbjct: 62  RAIFYNSNRNEKRLTRGGRGFVKQNPLNTGDLTLIAF 98

This family contains the N-terminal DNA binding domain of type IIE restriction endonuclease EcoRII-like proteins, the C-terminal DNA binding domain of type IIS restriction endonuclease BfiI-like proteins and plant-specific B3 proteins. Type II restriction endonucleases are components of restriction modification (RM) systems that protect bacteria and archaea against invading foreign DNA. They usually function as homodimers or homotetramers that cleave DNA at defined sites of 4 to 8 bp in length, and they require Mg2+, not ATP or GTP, for catalysis. EcoRII is specific for the 5'-CCWGG sequence (W stands for A or T). EcoRII consists of 2 domains, the C-terminal catalytic/dimerization domain (EcoRII-C), and the N-terminal effector DNA binding domain (EcoRII-N). BfiI is unique in cleaving DNA at fixed positions downstream of an asymmetric sequence in the absence of Mg2+. BfiI consists of two discrete domains with distinct functions: an N-terminal catalytic domain with non-specific nuclease activity and dimerization function that is more closely related to Nuc, an EDTA-resistant nuclease from the phospholipase D (PLD) superfamily; and a C-terminal domain that specifically recognizes its target sequences, 5'-ACTGGG-3'. B3 proteins are a family of plant-specific transcription factors, involved in a great variety of processes, including seed development and auxin response. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	588
PF02362	100	B3: B3 DNA binding domain; InterPro: IPR003340 Two	99.68
PF03754	114	DUF313: Domain of unknown function (DUF313) ; Inte	98.02
PF09217	156	EcoRII-N: Restriction endonuclease EcoRII, N-termi	97.57

>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species

Probab=99.68  E-value=2.2e-16  Score=132.72  Aligned_cols=98  Identities=24%  Similarity=0.437  Sum_probs=69.7

Q ss_pred             EEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceec-cCchhhhhccCCCC
Q 007837          359 FEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVL-EGVTPCIQNMQLQA  437 (588)
Q Consensus       359 F~KvLT~SDVg~lgRLVIPK~~AE~~FP~L~~~eG~~L~v~D~~GK~W~FRfryw~Nn~SR~YVL-eGWs~FVRsK~Lka  437 (588)
                      |.|+|+++|+.+..+|+||++.++.+.  +....++.+.++|..|++|.+++.++. +..+ |++ .||.+||++++|++
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~~--~~~~~~~~v~l~~~~g~~W~v~~~~~~-~~~~-~~l~~GW~~Fv~~n~L~~   76 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKHG--GNKRKSREVTLKDPDGRSWPVKLKYRK-NSGR-YYLTGGWKKFVRDNGLKE   76 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTTS----SS--CEEEEEETTTEEEEEEEEEEC-CTTE-EEEETTHHHHHHHCT--T
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHhC--CCcCCCeEEEEEeCCCCEEEEEEEEEc-cCCe-EEECCCHHHHHHHcCCCC
Confidence            899999999998889999999999982  112357899999999999999999873 3334 555 59999999999999


Q ss_pred             CCEEEEEEec-CCCeEEEEEEeCC
Q 007837          438 GDIVTFSRLE-PEGKLVMGFRKAS  460 (588)
Q Consensus       438 GDtVvF~R~e-pnGkL~IGvRRa~  460 (588)
                      ||.|+|+... ...++.|.+.|++
T Consensus        77 GD~~~F~~~~~~~~~~~v~i~~~~  100 (100)
T PF02362_consen   77 GDVCVFELIGNSNFTLKVHIFRKS  100 (100)
T ss_dssp             T-EEEEEE-SSSCE-EEEEEE---
T ss_pred             CCEEEEEEecCCCceEEEEEEECc
Confidence            9999999975 3445799988863

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.

>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function

Probab=98.02  E-value=1.4e-05  Score=72.76  Aligned_cols=80  Identities=21%  Similarity=0.427  Sum_probs=63.8

Q ss_pred             CcccceEEEecccccCCC-CCcEEeehhhhcc--cCCC-----C-------CCCCCceEEEEeCCCCeEEEEEEEcCC-C
Q 007837          353 SVITPLFEKMLSASDAGR-IGRLVLPKKCAEA--YFPP-----I-------SQPEGLPLKVQDSKGKEWIFQFRFWPN-N  416 (588)
Q Consensus       353 s~~~~LF~KvLT~SDVg~-lgRLVIPK~~AE~--~FP~-----L-------~~~eG~~L~v~D~~GK~W~FRfryw~N-n  416 (588)
                      .....+|+|+|++|||.. .+||.||-.....  +|=+     |       ....|+.+.+.|..++.|..+++.|.- +
T Consensus        18 ~d~kli~~K~L~~tDv~~~qsRLsmP~~qi~~~dFLt~eE~~~i~~~~~~~~~~~Gv~V~lvdp~~~~~~m~lkkW~mg~   97 (114)
T PF03754_consen   18 EDPKLIIEKTLFKTDVDPHQSRLSMPFNQIIDNDFLTEEEKRIIKEEKKNNDKKKGVEVILVDPSLRKWTMRLKKWNMGN   97 (114)
T ss_pred             CCCeEEEeeeecccCCCCCCceeeccHHHhcccccCCHHHHHHHHHhhccCcccCCceEEEECCcCcEEEEEEEEecccC
Confidence            556889999999999995 7999999876533  2321     2       235789999999999999999999964 4


Q ss_pred             CCcceecc-Cchhhhhc
Q 007837          417 NSRMYVLE-GVTPCIQN  432 (588)
Q Consensus       417 ~SR~YVLe-GWs~FVRs  432 (588)
                      ..-.|+|. ||.+.|.+
T Consensus        98 ~~~~YvL~~gWn~VV~~  114 (114)
T PF03754_consen   98 GTSNYVLNSGWNKVVED  114 (114)
T ss_pred             CceEEEEEcChHhhccC
Confidence            56689995 99999863

>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV

Probab=97.57  E-value=0.00021  Score=68.50  Aligned_cols=89  Identities=21%  Similarity=0.347  Sum_probs=57.5

Q ss_pred             cceEEEecccccCCCC----CcEEeehhhhcccCCCCCC----CCCceEEEEeCCC--CeEEEEEEEcCC----CCCcce
Q 007837          356 TPLFEKMLSASDAGRI----GRLVLPKKCAEAYFPPISQ----PEGLPLKVQDSKG--KEWIFQFRFWPN----NNSRMY  421 (588)
Q Consensus       356 ~~LF~KvLT~SDVg~l----gRLVIPK~~AE~~FP~L~~----~eG~~L~v~D~~G--K~W~FRfryw~N----n~SR~Y  421 (588)
                      ...|.|.||+.|++.+    .++.|||..++.+||.+..    .+.+.|.+++..+  ..|+||++|+-|    ..+..|
T Consensus         7 ~~~~~K~LSaNDtGaTGgHQaGiyIpk~~~~~lFp~~~~~~~~Np~~~~~~~~~s~~~~~~~~r~iYYnn~~~~gTRNE~   86 (156)
T PF09217_consen    7 WAIYCKRLSANDTGATGGHQAGIYIPKSAAELLFPSINHTKEENPDIWLKARWQSHFVTDSQVRFIYYNNRLFGGTRNEY   86 (156)
T ss_dssp             EEEEEEE--CCCCTTTSSS--EEEE-HHHHHHH-GGG-SSSSSS-EEEEEEEETTTT---EEEEEEEE-CCCTTSS--EE
T ss_pred             eEEEEEEccCCCCCCcCcccceeEecccHHHHhCCCCCcccccCCceeEEEEECCCCccceeEEEEEEcccccCCCcCce
Confidence            4689999999999963    5899999988999988754    2458899999877  679999999932    246679


Q ss_pred             eccCchhhhhccC-CCCCCEEEEE
Q 007837          422 VLEGVTPCIQNMQ-LQAGDIVTFS  444 (588)
Q Consensus       422 VLeGWs~FVRsK~-LkaGDtVvF~  444 (588)
                      -+++|+....--+ =.+||.++|.
T Consensus        87 RIT~~G~~~~~~~~~~tGaL~vla  110 (156)
T PF09217_consen   87 RITRFGRGFPLQNPENTGALLVLA  110 (156)
T ss_dssp             EEE---TTSGGG-GGGTT-EEEEE
T ss_pred             EEeeecCCCccCCccccccEEEEE
Confidence            9999987666433 3689988776

All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the N-terminal effector-binding domain of the type II restriction endonuclease EcoRII, which has a DNA recognition fold, allowing for binding to 5'-CCWGG sequences. It assumes a structure composed of an eight-stranded beta-sheet with the strands in the order of b2, b5, b4, b3, b7, b6, b1 and b8. They are mostly antiparallel to each other except that b3 is parallel to b7. Alternatively, it may also be viewed as consisting of two mini beta-sheets of four antiparallel beta-strands, sheet I from beta-strands b2, b5, b4, b3 and sheet II from strands b7, b6, b1, b8, folded into an open mixed beta-barrel with a novel topology. Sheet I has a simple Greek key motif while sheet II does not []. The domain represented by this entry is only found in bacterial proteins.; PDB: 3HQF_A 1NA6_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	588
1wid_A	130	Solution Structure Of The B3 Dna-Binding Domain Of		5e-14

>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 75/123 (60%), Gaps = 10/123 (8%)
Query: 358 LFEKMLSASDAGRIGRLVLPKKCAEAYFP-PISQ--PEGLPLKVQDSKGKEWIFQFRFWP 414
           LFEK ++ SD G++ RLV+PK  AE +FP P S    +G+ L  +D  GK W F++ +W 
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW- 71
Query: 415 NNNSRMYVL-EGVTPCIQNMQLQAGDIVTFSRLEPEG-KLVMGFRKASSASASDQDNEAN 472
            N+S+ YVL +G +  ++   L+AGD+V+FSR   +  +L +G++   S S SD D    
Sbjct: 72  -NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWK---SRSGSDLDASGP 127
Query: 473 KAG 475
            +G
Sbjct: 128 SSG 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	588
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	1e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130

 Score =  107 bits (267), Expect = 1e-27
 Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 7/123 (5%)

Query: 348 SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPIS---QPEGLPLKVQDSKGK 404
           SG S      LFEK ++ SD G++ RLV+PK  AE +FP  S     +G+ L  +D  GK
Sbjct: 3   SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGK 62

Query: 405 EWIFQFRFWPNNNSRMYVL-EGVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSA 462
            W F++ +W  N+S+ YVL +G +  ++   L+AGD+V+FSR    + +L +G++  S +
Sbjct: 63  VWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS 120

Query: 463 SAS 465
              
Sbjct: 121 DLD 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 71/550 (12%), Positives = 147/550 (26%), Gaps = 178/550 (32%)

Query: 134 YQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAG--- 190
           ++  F   + +   K+  Q      +   +   +  S            +   LS     
Sbjct: 25  FEDAF---VDNFDCKD-VQDMPKSILSKEEIDHIIMS--KDAVSGTLRLFWTLLSKQEEM 78

Query: 191 -------IDRINAS---ERLSV----PSLEKRKLEDFSERLMNGGLKSGSRDIP--ENAN 234
                  + RIN       +      PS+  R   +  +RL N        ++   +   
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 235 AGSNC--DMQPS-------------SCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNS 279
                  +++P+             + +                     + + +    NS
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 280 QIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVR----NGRPR---VDARGRSQLL 332
                 + L  + +  L+ Q   N  + +D     ++R        R         + LL
Sbjct: 195 ----PETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 333 -------PRYWPRF--------TDQDLQ---QISGDSNSVI---------TP-----LFE 360
                   + W  F        T +  Q    +S  + + I         TP     L  
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 361 KML--SASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIF--QFRFWPN- 415
           K L     D        LP+   E            P ++        I     R     
Sbjct: 309 KYLDCRPQD--------LPR---EV-------LTTNPRRLS-------IIAESIRDGLAT 343

Query: 416 -NNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEG------KLVMGFRKASSASASDQD 468
            +N +    + +T  I+          + + LEP        +L + F            
Sbjct: 344 WDNWKHVNCDKLTTIIE---------SSLNVLEPAEYRKMFDRLSV-FPP---------- 383

Query: 469 NEANKAGTGIPANGHAELADPSSWSKVDKS--GYIATEALGAKSSISRKRKNTTLG---- 522
                    IP    + +     W  V KS    +  + L   S + ++ K +T+     
Sbjct: 384 ------SAHIPTILLSLI-----WFDVIKSDVMVVVNK-LHKYSLVEKQPKESTISIPSI 431

Query: 523 SKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEF----------EEYED 572
               ++K+ENE  +   +   +   + +   ++      ++ Y +          E  E 
Sbjct: 432 YLELKVKLENEYALHRSIV--DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 573 APILGKPTIF 582
             +     +F
Sbjct: 490 MTLF--RMVF 497

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	588
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	99.95
4i1k_A	146	B3 domain-containing transcription factor VRN1; B3	99.59
1yel_A	104	AT1G16640; CESG, protein structure initiative, str	99.42
1na6_A	404	Ecorii, restriction endonuclease ecorii; site-spec	89.4

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.95  E-value=6.5e-28  Score=216.43  Aligned_cols=119  Identities=38%  Similarity=0.717  Sum_probs=100.4

Q ss_pred             CCCCCcccceEEEecccccCCCCCcEEeehhhhcccCCCCCC---CCCceEEEEeCCCCeEEEEEEEcCCCCCcceecc-
Q 007837          349 GDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLE-  424 (588)
Q Consensus       349 ~d~ns~~~~LF~KvLT~SDVg~lgRLVIPK~~AE~~FP~L~~---~eG~~L~v~D~~GK~W~FRfryw~Nn~SR~YVLe-  424 (588)
                      +..+.+..++|.|+||+|||++.+||+||+++|+.|||.++.   .+++.|.++|.+|++|+|+|+||  +.+++|+|+ 
T Consensus         4 ~~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt~   81 (130)
T 1wid_A            4 GSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLTK   81 (130)
T ss_dssp             ----CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEES
T ss_pred             CCCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEcC
Confidence            445567788999999999999889999999999999999874   57899999999999999999999  567788886 


Q ss_pred             CchhhhhccCCCCCCEEEEEEec-CCCeEEEEEEeCCCCCCcccccc
Q 007837          425 GVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSASASDQDNE  470 (588)
Q Consensus       425 GWs~FVRsK~LkaGDtVvF~R~e-pnGkL~IGvRRa~~~~~s~q~~~  470 (588)
                      ||..||++|+|++||+|+|++.+ .+++|+|++||+.... ++|.+.
T Consensus        82 GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~-~~~~~~  127 (130)
T 1wid_A           82 GWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD-LDASGP  127 (130)
T ss_dssp             SHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS-SCC---
T ss_pred             ChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC-ccccCC
Confidence            99999999999999999999986 3468999999998654 455443

>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}

Probab=99.59  E-value=5.3e-15  Score=135.67  Aligned_cols=98  Identities=24%  Similarity=0.290  Sum_probs=82.8

Q ss_pred             ccceEEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccC
Q 007837          355 ITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQ  434 (588)
Q Consensus       355 ~~~LF~KvLT~SDVg~lgRLVIPK~~AE~~FP~L~~~eG~~L~v~D~~GK~W~FRfryw~Nn~SR~YVLeGWs~FVRsK~  434 (588)
                      -.+.|.|+|++|||.+..+|.||++.++.|||..    ...+.++|. |+.|.+++.|+.   +++++..||..||++++
T Consensus        45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~----~~~i~L~~~-gk~W~v~~~~~~---~~~~ls~GW~~Fv~dn~  116 (146)
T 4i1k_A           45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI----SGFIKVQLA-EKQWPVRCLYKA---GRAKFSQGWYEFTLENN  116 (146)
T ss_dssp             SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC----CSEEEEEET-TEEEEEEEEEET---TEEEECTTHHHHHHHTT
T ss_pred             CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCC----CeEEEEEEC-CcEEEEEEEEeC---CcEEECCchHHHHHHcC
Confidence            3579999999999997678999999999999973    468889998 699999999982   35566679999999999


Q ss_pred             CCCCCEEEEEEecCCC-eEEEEEEeCC
Q 007837          435 LQAGDIVTFSRLEPEG-KLVMGFRKAS  460 (588)
Q Consensus       435 LkaGDtVvF~R~epnG-kL~IGvRRa~  460 (588)
                      |++||+|+|...+... .|.|.+-|+.
T Consensus       117 L~~GD~cvFeli~~~~~~f~V~IfR~~  143 (146)
T 4i1k_A          117 LGEGDVCVFELLRTRDFVLKVTAFRVN  143 (146)
T ss_dssp             CCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred             CCCCCEEEEEEecCCceEEEEEEEecc
Confidence            9999999999986433 5778777764

>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.42  E-value=6.6e-13  Score=114.08  Aligned_cols=93  Identities=14%  Similarity=0.282  Sum_probs=75.8

Q ss_pred             cceEEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCC
Q 007837          356 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQL  435 (588)
Q Consensus       356 ~~LF~KvLT~SDVg~lgRLVIPK~~AE~~FP~L~~~eG~~L~v~D~~GK~W~FRfryw~Nn~SR~YVLeGWs~FVRsK~L  435 (588)
                      .+.|.|+|+++|.  ..+|.||++.++.+.+.+    +..+.++|..|+.|.+++..+.   .+.++..||.+||++++|
T Consensus         8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~----~~~v~L~~~~G~~W~v~~~~~~---~~~~l~~GW~~Fv~~~~L   78 (104)
T 1yel_A            8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKRG---EKVFLTVGWENFVKDNNL   78 (104)
T ss_dssp             CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEET---TEEEECTTHHHHHHHHTC
T ss_pred             CCCEEEEECCCCc--cceEECCHHHHHhcCccC----CCEEEEECCCCCEEEEEEEEEC---CcEEEccChHHHHHHcCC
Confidence            4689999999994  369999999987766543    4689999999999999999872   344555699999999999


Q ss_pred             CCCCEEEEEEecCCCeEEEEEEe
Q 007837          436 QAGDIVTFSRLEPEGKLVMGFRK  458 (588)
Q Consensus       436 kaGDtVvF~R~epnGkL~IGvRR  458 (588)
                      ++||.|+|.... +..+.|-+=+
T Consensus        79 ~~GD~lvF~~~~-~~~f~V~If~  100 (104)
T 1yel_A           79 EDGKYLQFIYDR-DRTFYVIIYG  100 (104)
T ss_dssp             CTTCEEEEEECS-SSEEEEEEEC
T ss_pred             CCCCEEEEEEcC-CCeEEEEEEC
Confidence            999999998864 6677666544

>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A

Probab=89.40  E-value=0.41  Score=50.92  Aligned_cols=91  Identities=16%  Similarity=0.162  Sum_probs=64.3

Q ss_pred             cceEEEecccccCCC----CCcEEeehhhhcccCCCCCCC---CC-ceE--EEEeCCCCeEEEEEEEcCC----CCCcce
Q 007837          356 TPLFEKMLSASDAGR----IGRLVLPKKCAEAYFPPISQP---EG-LPL--KVQDSKGKEWIFQFRFWPN----NNSRMY  421 (588)
Q Consensus       356 ~~LF~KvLT~SDVg~----lgRLVIPK~~AE~~FP~L~~~---eG-~~L--~v~D~~GK~W~FRfryw~N----n~SR~Y  421 (588)
                      ...|.|.|++.|++.    ...+.+||...+.+||.|+.+   +. +.+  .+-|...-.+.++++|+-|    ..+..|
T Consensus        18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy   97 (404)
T 1na6_A           18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK   97 (404)
T ss_dssp             EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred             chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence            478999999999995    358999997688999988722   21 222  2334434555999998821    234468


Q ss_pred             eccCch-hhhhccCCCCCCEEEEEEe
Q 007837          422 VLEGVT-PCIQNMQLQAGDIVTFSRL  446 (588)
Q Consensus       422 VLeGWs-~FVRsK~LkaGDtVvF~R~  446 (588)
                      -|+.|. .+.=.....+||.++|-+.
T Consensus        98 RLt~~~~~~~~~~~a~~GDLlvia~~  123 (404)
T 1na6_A           98 RITRWGRGSPLQDPENTGALTLLAFK  123 (404)
T ss_dssp             EEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred             EEeecCCCCcccccCCCCCEEEEEEe
Confidence            888775 4455578899999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	588
d1wida_	117	b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre	6e-30
d1na6a1	175	b.142.1.1 (A:4-178) Restriction endonuclease EcoRI	1e-22
d1yela1	102	b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid	3e-12

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  111 bits (279), Expect = 6e-30
 Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 5/112 (4%)

Query: 356 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRF 412
             LFEK ++ SD G++ RLV+PK  AE +FP  S     +G+ L  +D  GK W F++ +
Sbjct: 4   EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSY 63

Query: 413 WPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPE-GKLVMGFRKASSAS 463
           W ++ S +   +G +  ++   L+AGD+V+FSR   +  +L +G++  S + 
Sbjct: 64  WNSSQSYVL-TKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 114

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 93.1 bits (231), Expect = 1e-22
 Identities = 26/148 (17%), Positives = 43/148 (29%), Gaps = 20/148 (13%)

Query: 350 DSNSVITPLFEKMLSASDAGRIGR----LVLPKKCAEAYFPPISQPE------GLPLKVQ 399
           +       ++ K LSA+D G  G     L +P    E  FP I+          L   V 
Sbjct: 9   EIACENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVS 68

Query: 400 DSKGKEWIFQFRFWPN-------NNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKL 452
                +   +  ++ +       N  R+      +P         G +   +    E   
Sbjct: 69  SHDCPDSEARAIYYNSAHFGKTRNEKRITRWGRGSPLQD--PENTGALTLLAFKLDEQGG 126

Query: 453 VMGFRKAS-SASASDQDNEANKAGTGIP 479
                     AS  ++D      G  IP
Sbjct: 127 DCKEVNIWVCASTDEEDVIETAIGEVIP 154

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 357 PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNN 416
             F K   +  + +   L +P    E +  P        + + D  G+ W  + +     
Sbjct: 7   VQFMKPFISEKSSK--SLEIPLGFNEYFPAPFPIT----VDLLDYSGRSWTVRMK---KR 57

Query: 417 NSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEP 448
             ++++  G    +++  L+ G  + F     
Sbjct: 58  GEKVFLTVGWENFVKDNNLEDGKYLQFIYDRD 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	588
d1wida_	117	DNA-binding protein RAV1 {Thale cress (Arabidopsis	99.93
d1na6a1	175	Restriction endonuclease EcoRII, N-terminal domain	99.61
d1yela1	102	At1g16640 {Thale cress (Arabidopsis thaliana) [Tax	99.36

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=9.7e-26  Score=194.84  Aligned_cols=107  Identities=35%  Similarity=0.696  Sum_probs=93.1

Q ss_pred             ccceEEEecccccCCCCCcEEeehhhhcccCCCCCC---CCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhh
Q 007837          355 ITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQ  431 (588)
Q Consensus       355 ~~~LF~KvLT~SDVg~lgRLVIPK~~AE~~FP~L~~---~eG~~L~v~D~~GK~W~FRfryw~Nn~SR~YVLeGWs~FVR  431 (588)
                      ..++|+|+||+|||++.+||+||+++|++|||+++.   .+++.|.+.|.+|++|+|+|++|.+ ..+.++..||.+||+
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~-~~~~~l~~GW~~Fv~   81 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS-SQSYVLTKGWSRFVK   81 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETT-TTEEEEESSHHHHHH
T ss_pred             CceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECC-CCceEEecCHHHHHH
Confidence            457999999999999889999999999999999875   4689999999999999999999942 333344469999999


Q ss_pred             ccCCCCCCEEEEEEec-CCCeEEEEEEeCCCC
Q 007837          432 NMQLQAGDIVTFSRLE-PEGKLVMGFRKASSA  462 (588)
Q Consensus       432 sK~LkaGDtVvF~R~e-pnGkL~IGvRRa~~~  462 (588)
                      +++|++||+|+|++.+ .+|+|+|++||++..
T Consensus        82 ~~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          82 EKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             HTTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             HcCCCCCCEEEEEEEeCCCCEEEEEEEECCCC
Confidence            9999999999999986 457899999998744

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1e-16  Score=149.51  Aligned_cols=107  Identities=16%  Similarity=0.128  Sum_probs=83.3

Q ss_pred             CcccceEEEecccccCCCCCc----EEeehhhhcccCCCCCCC----CCceE--EEEeCCCCeEEEEEEEcCC----CCC
Q 007837          353 SVITPLFEKMLSASDAGRIGR----LVLPKKCAEAYFPPISQP----EGLPL--KVQDSKGKEWIFQFRFWPN----NNS  418 (588)
Q Consensus       353 s~~~~LF~KvLT~SDVg~lgR----LVIPK~~AE~~FP~L~~~----eG~~L--~v~D~~GK~W~FRfryw~N----n~S  418 (588)
                      +....+|.|.||+|||+++||    |+|||++|+.+||+|+..    +.+.|  .+.|.+|++|+|||+||.|    ..+
T Consensus        12 ~~~~~~F~K~LtasD~g~tg~HQaG~~IPK~~ae~~FP~l~~~~e~nP~~~l~~~i~d~~g~~w~fR~iYyn~~~~ggTR   91 (175)
T d1na6a1          12 CENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTR   91 (175)
T ss_dssp             HSSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCC
T ss_pred             CCceEEEEEEcccccccccCCccceeeecHHHHHHhCCCCCcccccCCCceEEEEEecCCCCeeEEEEEEECCccCCCcc
Confidence            445789999999999999887    999999999999999842    33455  5669999999999999932    124


Q ss_pred             cceecc-CchhhhhccCCCCCCEEEEEEecCCC---eEEEEEEeC
Q 007837          419 RMYVLE-GVTPCIQNMQLQAGDIVTFSRLEPEG---KLVMGFRKA  459 (588)
Q Consensus       419 R~YVLe-GWs~FVRsK~LkaGDtVvF~R~epnG---kL~IGvRRa  459 (588)
                      ..|.++ .|..|+..+.+.+||+++|.+..+.+   ...|.+-.-
T Consensus        92 neyRiT~~g~~~~~~~~~n~G~l~i~af~~~~~~~~~~~~~vwvc  136 (175)
T d1na6a1          92 NEKRITRWGRGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWVC  136 (175)
T ss_dssp             CEEEEECCCTTSGGGCGGGTTCEEEEEEECCTTSCCCCEEEEEEC
T ss_pred             ccEEEEeccccccccCccccccEEEEEeecCCCCCceeEEEEEEe
Confidence            678887 67899999999999999999963332   244444443

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.36  E-value=1.1e-12  Score=111.43  Aligned_cols=91  Identities=14%  Similarity=0.308  Sum_probs=76.0

Q ss_pred             ceEEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCC
Q 007837          357 PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQ  436 (588)
Q Consensus       357 ~LF~KvLT~SDVg~lgRLVIPK~~AE~~FP~L~~~eG~~L~v~D~~GK~W~FRfryw~Nn~SR~YVLeGWs~FVRsK~Lk  436 (588)
                      +-|.|+|.++++.  .+|.||++.+..+.+.+    ...++++|..|+.|.+++...   +.++|+..||.+||++++|+
T Consensus         7 ~~Ffkv~~~~~~~--~~L~IP~~F~~~~~~~~----~~~i~L~d~~G~~W~v~~~~~---~~~~~~~~GW~~Fv~~n~L~   77 (102)
T d1yela1           7 VQFMKPFISEKSS--KSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKR---GEKVFLTVGWENFVKDNNLE   77 (102)
T ss_dssp             EEEEEECCHHHHT--TCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEE---TTEEEECTTHHHHHHHHTCC
T ss_pred             CeEEEEEcCcccC--CCEECCHHHHHhCCCCC----CCEEEEEcCCCCEEEEEEEEe---CCeEEEccCHHHHHHHcCCC
Confidence            5689999999986  48999999988777653    468899999999999998865   45667778999999999999


Q ss_pred             CCCEEEEEEecCCCeEEEEEE
Q 007837          437 AGDIVTFSRLEPEGKLVMGFR  457 (588)
Q Consensus       437 aGDtVvF~R~epnGkL~IGvR  457 (588)
                      +||.|+|.... +..+.|.+=
T Consensus        78 ~GD~~vF~~~~-~~~f~V~If   97 (102)
T d1yela1          78 DGKYLQFIYDR-DRTFYVIIY   97 (102)
T ss_dssp             TTCEEEEEECS-SSEEEEEEE
T ss_pred             cCCEEEEEEcC-CcEEEEEEe
Confidence            99999998864 777766553